ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Southern University of Science and Technology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Fimbriimonas sp.

ncbi_submitter: University of Florida


ncbi_assembly_level: Contig

ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


gtdb_representative: t

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: North West University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medicine Greifswald


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: freshwater MAG --- Ki3-D3_bin-1139

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Stockholm University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments

ncbi_organism_name: Bacteroidetes bacterium 4572_128

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium 4572_128


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: EMG


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil with plant cover day10_CT

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma Metropolitana Unidad Xochimilco


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Switzerland

ncbi_isolation_source: raw sausage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_submitter: University of British Columbia


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Argentina: Tucuman

ncbi_isolation_source: Broncho-alveolar lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: LABACER 27

ncbi_submitter: CERELA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: University of Bern


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Globicatella sp. PHS-GS-PNBC-21-1553

ncbi_submitter: Poultry Health Services


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Canada

ncbi_isolation_source: skin wound of male patient

ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: Laboratoire de sante publique du Quebec


ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA

ncbi_isolation_source: Spine

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9010

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Algoriella sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Buttiauxella gaviniae

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA891

ncbi_submitter: University of Queensland


ncbi_country: China: Heilongjiang

ncbi_isolation_source: Fermented milk

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Harbin Institute of Technology


ncbi_organism_name: Micrococcus sp. M4NT

ncbi_submitter: University of Plymouth


ncbi_country: Kuwait

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kuwait University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jeonbuk National University


ncbi_country: Thailand: Ubon

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_submitter: Faculdade de Medicina Veterinaria e Zootecnia de Botucatu

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_assembly_name: freshwater MAG --- Ki2-D1_bin-1114

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_country: China: Dalian Peninsula

ncbi_isolation_source: surface seawater

ncbi_organism_name: Thioclava dalianensis

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Psychrosphaera sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Nocardia cyriacigeorgica GUH-2

ncbi_submitter: CEA/DSV/IG/Genoscope


ncbi_country: Germany

ncbi_isolation_source: egg shells

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Brazil: Camocim de So Flix; PE

ncbi_isolation_source: fruit

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Universidade Federal Rural de Pernambuco


ncbi_organism_name: Bacteroides caecicola

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0245

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Xanthobacteraceae bacterium


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_country: Japan: Shiga

ncbi_isolation_source: river water

ncbi_organism_name: Serratia sp. JSRIV001

ncbi_submitter: Kyoto University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. JSRIV001


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D7_bin-232

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. Occ4-3

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: uncultured Acidovorax sp.


ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Durham; NH

ncbi_isolation_source: root nodules

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of New Hampshire

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolate: metabat2_pooled_hifiasm.1119 MAG

ncbi_organism_name: Corallococcus sp. CAG:1435

ncbi_strain_identifiers: metabat2_pooled_hifiasm.1119 MAG

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jeonbuk National University


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-6500

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_country: Tanzania: Zanzibar

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Bern


ncbi_organism_name: Amycolatopsis sulphurea

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: agarose-alginate mix 40-100 m particle (artificial) late colonization

ncbi_organism_name: Winogradskyella psychrotolerans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Maricaulis sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus infantarius

ncbi_submitter: BGI-Shenzhen


ncbi_country: South Korea:Jinju

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Stenotrophomonas sp. NPDC087984

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_country: South Korea

ncbi_isolation_source: veinous blood

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_isolation_source: Nasophaynx


ncbi_country: Hong Kong

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_isolation_source: not provided

ncbi_organism_name: Prevotella conceptionensis


ncbi_strain_identifiers: sampleID UWx21930

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: UZ Brussel


ncbi_isolation_source: Throat


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom: Kent

ncbi_isolation_source: Preputial washing sample

ncbi_organism_name: Campylobacter fetus subsp. venerealis

ncbi_submitter: Faculdade de Medicina Veterinaria, Universidade de Lisboa


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Pseudomonas sp. 2024-346-3

ncbi_submitter: Instituto Nacional de Rehabilitacion


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Shewanella oncorhynchi

ncbi_submitter: Nofima


ncbi_isolate: AOP35_03E_surf _bin _31

ncbi_organism_name: Microbacterium sp.

ncbi_strain_identifiers: AOP35_03E_surf _bin _31

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Spirosoma sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Serratia sp. J2

ncbi_submitter: Slippery Rock University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. J2


ncbi_organism_name: Leucobacter sp. gxy201

ncbi_submitter: Ocean University of China


ncbi_country: China: Beijing

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; pilot scale (60m3) reactor for the removal of ammonium from the effluent from a primary clarifier of a full-scale WWTP.

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: Brazil: Tocantins

ncbi_isolation_source: Soil of the Cerrado; clay soil; Gurupi-TO; Brazil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Federal Universaty of Tocantins


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Sutterella parvirubra

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Pakistan

ncbi_isolation_source: rectal swab

ncbi_submitter: Cardiff University


ncbi_country: United Kingdom

ncbi_isolation_source: cheese starter

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: CIRM-BIA 632

ncbi_submitter: Brigham Young University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: Water

ncbi_submitter: University of Ibadan, Nigeria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Italy

ncbi_isolation_source: nasopharyngeal aspirate

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Cutibacterium acnes TypeIA2 P.acn33

ncbi_submitter: BAYGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes;sb__Cutibacterium acnes subsp. acnes;x__Cutibacterium acnes TypeIA2 P.acn33


ncbi_organism_name: bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: icddr,b


ncbi_organism_name: Deinococcus sonorensis KR-87

ncbi_submitter: Glendale Community College


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Bacteroides kribbi

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Nioella aestuarii

ncbi_submitter: ZheJiang University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: IGA Technology Services Srl


ncbi_organism_name: Luteimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Rwanda: Nyamasheke

ncbi_isolation_source: blood

ncbi_submitter: University of Rwanda

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Sweden: Vastra Gotaland; Gothenburg

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Enterococcus casseliflavus


ncbi_country: Puerto Rico: CEIBA

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia sp. Bp8977

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Sphingomonas oligophenolica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus sp. GDH8C103P

ncbi_submitter: South China Agricultural University


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Candidatus Skiveiella danica

ncbi_submitter: Aalborg University


ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasal swab

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Symbiosis International University


ncbi_organism_name: uncultured Tissierella sp.


ncbi_submitter: EBI


ncbi_country: Mexico: Cuernavaca; Morelos

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCGB12

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Streptomyces nojiriensis

ncbi_submitter: Technical University of Denmark


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Case Western Reserve University


ncbi_organism_name: Pikeienuella sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Salmonella enterica CVM N30669-SQ v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Beijing

ncbi_isolation_source: sheep meat

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Serbia: Zlatar

ncbi_isolation_source: raw cow milk

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Institute of Molecular Genetics and Genetic Engineering, University of Belgrade


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_isolation_source: seawater

ncbi_organism_name: Rhodococcus sp. EPR-157

ncbi_submitter: Zhejiang Wanli University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. EPR-157


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-3543

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Yunnan Province

ncbi_isolation_source: sputum from patient with respiratory tract infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: XDR

ncbi_submitter: China CDC


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_submitter: Heidelberg University Hospital


ncbi_country: China: Shanghai

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Chinese Academy of Agricultural Science


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Marinifilaceae bacterium

ncbi_submitter: University of Alicante


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum;x__Mycobacterium tuberculosis variant africanum MAL010100


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_submitter: University of Tartu


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: Burkholderia  cenocepacia BCC0460

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Poland: Lesser Poland;Bochnia

ncbi_isolation_source: Brine from the Bochnia Salt Mine

ncbi_organism_name: Chromohalobacter sp. 296-RDG

ncbi_submitter: University of Lodz


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_country: Mediterranean Sea

ncbi_organism_name: Flavobacteriales bacterium TMED96

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__unclassified Flavobacteriales;s__Flavobacteriales bacterium TMED96


ncbi_country: USA:New York; Morrisania

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Greece

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UiT - The Arctic University of Norway


ncbi_country: USA: Green Cove Springs

ncbi_isolation_source: epidermal algal mat

ncbi_submitter: Palacky University Olomouc


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Shanghai Jiao Tong University Affiliated Six People's Hospital


ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Uberlandia

ncbi_submitter: University of Sao Paulo


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: AIIMS, New Delhi


gtdb_type_species_of_genus: t

ncbi_organism_name: Prescottella equi NBRC 101255 = C 7

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Prescottella;s__Prescottella equi;x__Prescottella equi NBRC 101255 = C 7


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Bradyrhizobium sp. HKCCYLRH1144

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Tenggerimyces flavus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Maricaulis sp. MIT060901

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Sporofaciens sp. SGI.106

ncbi_submitter: University of Manitoba


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Streptomyces sp. NBC_01617

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Salmonella sp. SC6

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Arcanobacterium canis


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: EPFL


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 28

ncbi_strain_identifiers: CHS 28

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 28


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: zhejiang University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Denmark

ncbi_organism_name: Gallibacterium genomosp. 3

ncbi_submitter: University of Copenhagen


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPLOWO2_02_FULL_41_9


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Mouth

ncbi_organism_name: Veillonella dispar

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_submitter: Oregon State University


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Poland

ncbi_organism_name: Hafnia alvei

ncbi_submitter: nankai university


ncbi_country: USA: Tift Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: China: Qinling

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B3781

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Veillonella sp.


ncbi_country: Singapore

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National University of Singapore


ncbi_strain_identifiers: ATCC 13382 RIF

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: insititute for microbiology and immunology, faculty of medicine, univerza v ljubljani


ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli KOEGE 33 (68a)

ncbi_strain_identifiers: KOEGE 33 (68a)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli KOEGE 33 (68a)


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium EnGen0180

ncbi_strain_identifiers: VRE 84


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: National Institute of Health Sciences


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Shewanella sp. SR44-4

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Apotomis capreana


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Blautia hansenii DSM 20583

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia hansenii;x__Blautia hansenii DSM 20583


ncbi_organism_name: Catenuloplanes japonicus

ncbi_submitter: University of Illinois


ncbi_organism_name: Coprobacillaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM20776


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Kazakhstan: Alma-Ata region

ncbi_isolation_source: nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: ICBFM SB RAS


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0439

ncbi_submitter: Broad Institute


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_isolation_source: Eye

ncbi_organism_name: Arachnia propionica

ncbi_submitter: SC


ncbi_country: Viet Nam:Hanoi

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Liege


ncbi_organism_name: Klebsiella sp. G21-3159

ncbi_submitter: Jeonbuk National University Hospital


ncbi_organism_name: Roseibium album

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Mycobacterium sp. UNC280MFTsu5.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: USA


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallis sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Enterococcus casseliflavus


ncbi_organism_name: Clavibacter sp. Sh2088

ncbi_submitter: University of Tehran


ncbi_organism_name: Prevotella sp. UBA2941

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella sp. 96873

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: sputum from endotrachea

ncbi_organism_name: Staphylococcus aureus M0377

ncbi_submitter: Broad Institute


ncbi_country: France: Auvergne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Spain

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Ares Genetics


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Erciyes University


ncbi_country: India: Phansavale; Maharashtra

ncbi_isolation_source: groundwater

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: ZSC

ncbi_submitter: IIT Kharagpur


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Milan


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Bacillus cereus group sp. BCN156

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN156


ncbi_submitter: Fujian Provincial Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Wandsworth


ncbi_submitter: Laval University


ncbi_organism_name: Staphylococcus ureilyticus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Epilithonimonas zeae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Lactiplantibacillus paraplantarum

ncbi_submitter: Institute of Biochemistry and Biophysics, Polish Academy of Sciences


ncbi_organism_name: uncultured Porticoccaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Sphingobacterium suaedae


ncbi_organism_name: Duodenibacillus massiliensis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_submitter: University hospital Hamburg-Eppendorf


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Escherichia coli

ncbi_submitter: Uppsala University


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: USA: San Fransisco

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Candidatus Pelagibacter sp. Uisw_099_02

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. Uisw_099_02


ncbi_country: India: Jogeshwari; Mumbai; Maharashtra

ncbi_isolation_source: Chicken wet dropping

ncbi_organism_name: Bacillus stercoris

ncbi_submitter: Zytex biotech pvt ltd


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Bronchoalveolar lavage (BAL)

ncbi_organism_name: Burkholderia sp. AU45274

ncbi_submitter: University of Michigan


ncbi_country: Sweden

ncbi_isolation_source: bovine milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_country: China: Jiangsu

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_country: Australia: Kalgoorlie

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_organism_name: Desulfovibrionaceae bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: SSTI

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: water

ncbi_organism_name: Brevundimonas sp. M20

ncbi_submitter: Shandong First Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: China: suburban of Shanghai

ncbi_isolation_source: soil

ncbi_organism_name: Halobacillus sp. ACCC02827

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Photorhabdus kayaii

ncbi_submitter: University of Bern


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp. AF14-43

ncbi_submitter: BGI


ncbi_country: Singapore

ncbi_organism_name: Lactococcus garvieae

ncbi_strain_identifiers: FISHB

ncbi_submitter: Singapore General Hospital


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Fujian

ncbi_organism_name: Bacillus sp. FJAT-29814

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-29814


ncbi_country: Australia: Sydney

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Sydney


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Australia: Brisbane

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: The University of Queensland


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of California at Davis


ncbi_country: Malaysia: Johor

ncbi_isolation_source: fecal swab

ncbi_submitter: University of Malaya


ncbi_country: Pakistan: Faisalabad; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. F_18

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-207

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_strain_identifiers: new MAG-207

ncbi_submitter: Micoorganism


ncbi_country: China: Shenzhen; Guangdong

ncbi_organism_name: Bradyrhizobium jicamae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Bacteroides fragilis HMW 610

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis HMW 610


ncbi_isolation_source: sea water

ncbi_organism_name: Flavobacteriales bacterium UBA6770

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Pacific Ocean: Seamount; Mariana Trench

ncbi_isolation_source: seawater

ncbi_organism_name: Exiguobacterium sp. s21

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s21


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Central south university


ncbi_country: Poland: Poznan

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_country: Argentina

ncbi_isolation_source: urine

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China: Luzhou

ncbi_isolation_source: blood

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_country: India: Vellore

ncbi_submitter: Christian Medical College


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus sp. HMSC072G04

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Washington

ncbi_isolation_source: stool

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Morganella sp.

ncbi_submitter: EMG


ncbi_country: Japan:Ibaraki; Tsukuba city

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella lacticifex

ncbi_submitter: Advanced Analysis Center, National Agriculture and Food Research Organization


ncbi_country: South Korea:Busan

ncbi_submitter: Pukyong National University


ncbi_country: China: Chiu-lung River

ncbi_isolation_source: Mangrove habitat samples

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. doylei;x__Campylobacter jejuni subsp. doylei 269.97


ncbi_organism_name: Blattabacterium punctulatus

ncbi_strain_identifiers: CPUsm

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Arthrobacter russicus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Mycolicibacterium helvum


ncbi_country: Brazil: Pernambuco

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: FIOCRUZ


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: mBioClim

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Sphingobium sp. AP49

ncbi_submitter: Oak Ridge National Lab


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Holosporales bacterium


ncbi_country: India: Arunachal Pradesh

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; P+N+C amendment

ncbi_organism_name: Fimbriimonas sp.

ncbi_submitter: University of Montana


ncbi_organism_name: Providencia vermicola

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: JCVI


ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Aneurinibacillus aneurinilyticus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Halopseudomonas sabulinigri


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: subgingival plaque sample of a peridontally non-diseased subject

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands

ncbi_isolation_source: infant

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University College Cork


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Planktothrix rubescens

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Greece

ncbi_isolation_source: itra-abdominal tract infection

ncbi_submitter: AstraZeneca


ncbi_country: USA: New York state

ncbi_isolation_source: stool/fecal sample

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Newport

ncbi_submitter: Cornell University


ncbi_country: South Africa:Durban

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: SAR92 clade bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_country: China: Weihai

ncbi_organism_name: Corallincola holothuriorum

ncbi_submitter: shandong university


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: PVC group bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D7_bin-268

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Michigan


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Leptolyngbya sp. NK1-12

ncbi_submitter: Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Bacillus cereus group sp. MYBK110-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK110-2


ncbi_organism_name: Streptomyces sp. NPDC005506

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Collinsella tanakaei


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Salmonella sp. C3174

ncbi_submitter: Sichuan University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Paraburkholderia youngii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces sp. NPDC060077


ncbi_organism_name: Agathobacter rectalis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: China: Shanghai

ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Shanghai Advanced Research Institute, Chinese Academy of Sciences


ncbi_country: China

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Treponema vincentii

ncbi_strain_identifiers: OMZ 862

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 2; 20cm depth; 6 days after first rain event (27mm)

ncbi_organism_name: Nitrospirae bacterium 13_2_20CM_62_7

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium 13_2_20CM_62_7


ncbi_organism_name: Xanthomonas sp. WCS2018Noco2-18

ncbi_submitter: Utrecht University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: United Kingdom: London

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: University of Southern California


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: USA: Texas

ncbi_isolation_source: bovine lymph node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_organism_name: Aureimonas endophytica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Thiotrichaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Thalassospira tepidiphila

ncbi_submitter: Plant Environmental Microbiology Group, Institute of Plant Science and Resources, Okayama University


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: Canada: Manitoba

ncbi_isolation_source: stool

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Streptomyces bohaiensis

ncbi_submitter: Bharathidasan University


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Chile: Bahia de Concepcion

ncbi_isolation_source: Marine sediments from a bay

ncbi_organism_name: Desulfobacterales bacterium HSG16

ncbi_submitter: Aarhus University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Vienna


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Hunan University of Science and Engineering


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Center for Industrialization of Agricultural and Livestock Microorganisms


ncbi_country: USA: NY

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 11

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Wyoming


ncbi_organism_name: Sagittula marina

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: China-Japan friendship hospital


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: North Carolina

ncbi_isolation_source: feces

ncbi_organism_name: Akkermansia sp. GGCC_0220

ncbi_submitter: Gusto Global LLC


ncbi_country: Germany: Benzingerode

ncbi_isolation_source: Rhizosphere of Veronica beccabunga; a creek bank

ncbi_organism_name: Acinetobacter amyesii

ncbi_submitter: National Institute of Public Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Slovenia

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DGA CBRN Defence Center


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Syntrophomonas sp.

ncbi_submitter: University of Bremen


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: IMG-taxon 2639762559 annotated assembly

ncbi_organism_name: Mycolicibacterium neoaurum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Gordonibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: Peru

ncbi_isolation_source: xylem

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: UC Davis


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Comenius University Science Park


ncbi_country: Italy: Cesena

ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: CFBP 6771

ncbi_submitter: INRA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: France

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: USA:Walla Walla;WA

ncbi_isolation_source: cattle

ncbi_submitter: University of Idaho


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: EBI


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Streptomyces axinellae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium falsenii

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Huzhou cdc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Montana State University


ncbi_country: China: Shaanxi

ncbi_isolation_source: chicken cloacal swab

ncbi_submitter: China Agricultural University


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Intestinimonas;s__Intestinimonas massiliensis (ex Afouda et al. 2020)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: EMG


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: USA: Hawaii

ncbi_isolation_source: other

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_assembly_name: freshwater MAG --- Ki1-2-7m_bin-567

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_assembly_name: IMG-taxon 2634166319 annotated assembly

ncbi_organism_name: Algoriphagus aquimarinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rennes Hospital


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Polystyrene-feeding group superworm feces

ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: The University of Queensland


ncbi_country: China: Nanjing

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Aerococcus viridans

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Butyribacter sp.


ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Companilactobacillus baiquanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Acetobacterium wieringae

ncbi_strain_identifiers: N

ncbi_submitter: Institute of Applied Ecology (CAS)


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Finnish Food Authority


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Melbourne


ncbi_organism_name: Mycoplasmopsis lipophila

ncbi_strain_identifiers: MaBy

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: EMG


ncbi_isolate: HCA5 bin16

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: HCA5 bin16

ncbi_submitter: China Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shandong

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Fujian

ncbi_isolation_source: Fujian; China

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands: Schiermonikoog; North Sea beach

ncbi_isolation_source: Microbial mat

ncbi_organism_name: Spirulina sp. CCY15215

ncbi_submitter: University of Bristol


ncbi_country: USA: Boston; MA

ncbi_organism_name: Enterococcus faecalis EnGen0302

ncbi_submitter: Broad Institute


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Lactobacillus amylovorus subsp. animalium

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_isolation_source: Lake Washington

ncbi_organism_name: Methylotenera versatilis 79

ncbi_submitter: JGI


ncbi_organism_name: Petrimonas sp.

ncbi_submitter: University of Iowa


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-2075

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Air filter

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus cucumis (ex Kampfer et al. 2016)


ncbi_country: USA: California; San Diego Bay

ncbi_organism_name: Pseudoalteromonas sp. MMG024

ncbi_submitter: San Diego State University


ncbi_organism_name: Achromobacter sp.

ncbi_submitter: University of Waterloo


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Burkholderia pseudomallei K96243

ncbi_submitter: Sanger Institute


ncbi_organism_name: uncultured Caenibius sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-3998

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Exiguobacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp.


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China

ncbi_isolation_source: gastric juice

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium kansasii 824

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: abdominal wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Denmark

ncbi_isolate: 368 shch

ncbi_isolation_source: stool sample from a 64-year-old woman from Hamburg who presented with bloody diarrhea and did not develop hemolytic uremic syndrome (HUS)

ncbi_organism_name: Escherichia coli O104:H4 str. C227-11

ncbi_submitter: Icahn School of Medicine at Mount Sinai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. C227-11


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Poland

ncbi_isolation_source: Slow sand biofilter

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Neuchatel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Methylobacillus sp.

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_organism_name: uncultured Aliarcobacter sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Peritoneal fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: USA: PA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: New Zealand

ncbi_isolation_source: Post-mortem infection swab

ncbi_submitter: Massey University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Pork &Cabbage Dumplings

ncbi_submitter: Jinan university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Malaysia

ncbi_isolation_source: Gastric Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_isolate: VTEC

ncbi_isolation_source: feces

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Ruminococcus albus

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Guangzhou

ncbi_isolation_source: throat swab

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Senegal

ncbi_isolation_source: stool

ncbi_organism_name: Brucella intermedia

ncbi_submitter: institut hospitalo-universitaire IHU


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces thermospinosisporus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Acutalibacter muris


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Johns Hopkins Bloomberg School of Public Health


ncbi_country: China: Shenzhen

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: BGI


ncbi_organism_name: Deinococcus wulumuqiensis

ncbi_strain_identifiers: NEB 479

ncbi_submitter: NEB


ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Lebanon

ncbi_isolation_source: Fecal Matter2

ncbi_submitter: University of Wyoming


ncbi_country: Mali

ncbi_isolation_source: fermented cow milk

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Brigham Young University


ncbi_country: Portugal: Aveiro

ncbi_isolation_source: estuarine water

ncbi_organism_name: Psychrobacter sp. ENNN9_III

ncbi_submitter: Rede Paraense de Genômica e Proteômica


ncbi_country: China

ncbi_isolation_source: desert environment

ncbi_organism_name: Botryobacter ruber

ncbi_strain_identifiers: SYSU D60016

ncbi_submitter: Sun Yat-Sen University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Celeribacter marinus

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: caecum

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Zhejiang

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: Pakistan

ncbi_isolation_source: stool from child

ncbi_submitter: Lurie Children's/Northwestern


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Puerto Rico: Patillas

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Thermanaerosceptrum fracticalcis


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Faecousia sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium faecium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Washington University School of Medicine


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: France: Montpellier

ncbi_isolate: Ifro

ncbi_isolation_source: malpighian tubules

ncbi_organism_name: Candidatus Midichloria sp.

ncbi_strain_identifiers: Ifro

ncbi_submitter: University of South Bohemia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Midichloria;x__unclassified Candidatus Midichloria;s__Candidatus Midichloria sp.


ncbi_isolation_source: intestine

ncbi_organism_name: Myroides marinus

ncbi_submitter: City University of Hong Kong


ncbi_country: Chile: Santiago

ncbi_submitter: Universidad de Chile


ncbi_isolation_source: terrestrial

ncbi_organism_name: Massilia sp.

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean: Eastern Tropical North Pacific

ncbi_isolation_source: seawater from oxygen minimum zone

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Companilactobacillus sp. HBUAS59544

ncbi_submitter: Hubei University of Arts and Science


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Argentina

ncbi_organism_name: Escherichia coli 99.0816

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: USA

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Michigan


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Universidad Autonoma de Yucatan


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai General Hospital


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolate: SPRUCE 362

ncbi_organism_name: Vulcanimicrobiaceae bacterium

ncbi_strain_identifiers: SPRUCE 362


ncbi_isolation_source: gut metagenome


ncbi_country: USA: Ft. Benning; Georgia

ncbi_isolation_source: purulent abscess

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Uniformed Services University