ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


gtdb_representative: t

ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Faecalibaculum sp.


ncbi_organism_name: Agrobacterium radiobacter

ncbi_strain_identifiers: SEMIA 435

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_assembly_level: Chromosome

ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Los Alamos National Lab


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tahi Moana Above plume background

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatus Lambdaproteobacteria;x__unclassified Candidatus Lambdaproteobacteria;s__Candidatus Lambdaproteobacteria bacterium


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_assembly_name: PMEN

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. E-M22

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Brazil: Paraiba do Sul; Minas Gerais

ncbi_isolation_source: leaves

ncbi_organism_name: Brasilonema sp. UFV-L1

ncbi_submitter: Sao Paulo State University (UNESP)


ncbi_country: Australia: QLD

ncbi_isolation_source: freshwater

ncbi_organism_name: Umezakia ovalisporum FSS-45

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Acidaminococcus massiliensis

ncbi_submitter: EMG


ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Ruania sp.

ncbi_submitter: Zhejiang University


ncbi_country: Mexico

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Japan: Hokkaido

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. actinidifoliorum


ncbi_assembly_name: freshwater MAG --- MJ120924B_bin-440

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Ja1-D4_bin-232

ncbi_organism_name: uncultured Archangium sp.


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: SPRUCE 491

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 491

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Aquidulcibacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolate: isolate

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Salmonella sp. NW1074

ncbi_submitter: Sichuan University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Nepal

ncbi_isolation_source: nose

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_submitter: Aristotle University of Thessaloniki


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Alistipes sp. CAG:435

ncbi_submitter: DTU


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0359

ncbi_submitter: Broad Institute


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Barnesiella excrementavium


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Italy: Molveno (TN)

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Massilia sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Bayreuth

ncbi_isolation_source: nephridia

ncbi_organism_name: Verminephrobacter aporrectodeae subsp. tuberculatae

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Anderseniibacteriota;x__unclassified Candidatus Anderseniibacteriota;s__Candidatus Anderseniibacteriota bacterium


ncbi_country: South Korea: Daegu

ncbi_organism_name: Parabacteroides sp. B2-S-102

ncbi_submitter: Kyungpook National University School of Medicine


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: China: Guangzhou;Guangdong

ncbi_isolation_source: balf

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_country: USA

ncbi_isolation_source: blood from hospitalized preterm neonate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Washington University in St. Louis


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: soil

ncbi_organism_name: Chryseobacterium camelliae

ncbi_submitter: Shandong First Medical University & Shandong Academy of Medical Sciences


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: OCS155 cluster bacterium AG-414-G13

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__unclassified Actinomycetes;x__marine Actinobacteria clade;s__OCS155 cluster bacterium AG-414-G13


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Louisiana

ncbi_isolation_source: Contaminated groundwater

ncbi_organism_name: Dehalogenimonas alkenigignens

ncbi_refseq_category: reference genome

ncbi_submitter: Louisiana State University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: INRAE


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Moritella sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_country: China: Gansu

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: EPFL


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Staphylococcaceae bacterium UBA3889

ncbi_submitter: University of Queensland


ncbi_organism_name: Gemmatimonadota bacterium


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: enrichment of activated sludge from Daejeon WWTP

ncbi_organism_name: bacterium

ncbi_submitter: KAIST


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;x__unclassified Candidatus Fermentibacterota;s__candidate division Hyd24-12 bacterium UBA3253


ncbi_organism_name: Enterobacter mori

ncbi_strain_identifiers: SF

ncbi_submitter: National University of Sciences and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: VIC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: USA: IA

ncbi_isolation_source: bovine mammary gland

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Japan

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_organism_name: uncultured Jutongia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Agricultural field

ncbi_organism_name: Azospirillum argentinense

ncbi_submitter: Banaras Hindu University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Antarctica

ncbi_isolation_source: Psoroma sp.

ncbi_organism_name: Hymenobacter psoromatis

ncbi_submitter: Korea Polar Research Institute


ncbi_country: China: Fangchenggang

ncbi_isolation_source: anal swab

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangxi Zhuang Autonomous Region Center for Disease Control and Prevention


ncbi_organism_name: Streptococcus intermedius


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0150R

ncbi_submitter: Broad Institute


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: Russia: Kandalaksha Gulf; Lake Bolshye Khruslomeny

ncbi_isolation_source: enrichment culture inoculated with surface sediment from lake

ncbi_organism_name: Candidatus Chloroploca sp. Khr17

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;x__Chloroflexineae;f__Oscillochloridaceae;g__Candidatus Chloroploca;x__unclassified Candidatus Chloroploca;s__Candidatus Chloroploca sp. Khr17


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: fruit powder

ncbi_organism_name: Franconibacter helveticus 513

ncbi_submitter: OARSA, CFSAN


ncbi_country: United Kingdom: Sainsbury Centre for Visual Arts; Norwich

ncbi_isolation_source: air sample

ncbi_organism_name: Massilia norwichensis

ncbi_submitter: University Of Tasmania, Tasmania Inst Agriculture


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: Germany: Berlin

ncbi_organism_name: Escherichia coli

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Taibaiella helva

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Ghana

ncbi_isolation_source: fish

ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Acinetobacter soli

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Louisianna

ncbi_organism_name: Brucella canis

ncbi_submitter: Viginia Tech


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Desulfobacter sp. UBA2225

ncbi_submitter: University of Queensland


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: faecal


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2518645617 annotated assembly

ncbi_genome_representation: partial

ncbi_organism_name: Streptomyces sp. AmelKG-E11A

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Italy: Lecce

ncbi_organism_name: Amycolatopsis mediterranei

ncbi_submitter: CNR


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Methylobacterium sp. sgz302542


ncbi_submitter: Su Dong


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Nitriliruptoria bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas ogarae

ncbi_submitter: LMU Munich


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Proteobacteria bacterium UBA2136

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA2136


ncbi_submitter: Diversite, Ecologie et Evolution Microbienne, Unite Ecologie Systematique et Evolution


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_country: Belgium

ncbi_isolation_source: NPS

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus pittmaniae

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: water

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ GmbH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae SGBS006

ncbi_submitter: MD Anderson Cancer Center


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: EMG


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: lake water

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Loyola University Chicago


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Clostridiaceae bacterium UBA7035

ncbi_submitter: University of Queensland


ncbi_country: China: Nanchang; Poyang Lake

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Department of Laboratory Medicine


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Luzhou

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Brucella suis

ncbi_strain_identifiers: BSP

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-0257

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium RIFOXYC2_FULL_41_27


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Nocardia pneumoniae NBRC 100136

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Anaerococcus sp.


ncbi_organism_name: Methylococcaceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_isolation_source: Potato tuber

ncbi_organism_name: Streptomyces acidiscabies

ncbi_submitter: USDA Agricultural Research Service


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: South Korea

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: ChunLab, Inc.


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sea water


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Halifax

ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_organism_name: Enterococcus pseudoavium NBRC 100491


ncbi_country: USA: VA

ncbi_isolation_source: normal skin of the right arm

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 35

ncbi_submitter: Oregon State University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_strain_identifiers: Russia

ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis BCG


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Atopobiaceae bacterium UBA5363

ncbi_submitter: University of Queensland


ncbi_country: USA: Minnesota

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: Caecum


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Persephonella sp.

ncbi_submitter: Portland State University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea longicatena

ncbi_submitter: University of Chicago


ncbi_organism_name: Planktomarina temperata

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Psychrobacter sp. UBA5114


ncbi_country: Australia

ncbi_isolation_source: rumen

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Heidelberg

ncbi_submitter: Curtin University


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sputum from cystic fibrosis patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Montpellier Service de Microbiologie et Hygiene Hospitaliere CHU Nimes


ncbi_organism_name: uncultured Propionimicrobium sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus sp. AZ051

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Psychrobacter faecalis


ncbi_organism_name: Streptomyces sp. CBG33

ncbi_submitter: institute of biotechnology


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Streptomyces sp. NPDC004667

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands

ncbi_isolation_source: eggs of a tick infected in nature

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium acidiphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidad de las Americas


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1165


ncbi_country: Belize: Carrie Bow Cay

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pseudoalteromonas sp. ACER1

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_organism_name: Cucumibacter sp.

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_submitter: Helmholtz Center Munich


ncbi_country: USA

ncbi_isolation_source: sinus

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: JCVI


ncbi_country: China:Henan Province

ncbi_isolation_source: liver

ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Arthrobacter sp. NtRootA9

ncbi_submitter: Research Institute for Sustainable Humanosphere (RISH), Kyoto University


ncbi_organism_name: Yoonia sp.

ncbi_submitter: Tang lab


ncbi_country: China: Guangzhou

ncbi_isolation_source: litchi pericarp

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Institute of Fruit Tree Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Gobi Desert

ncbi_isolate: GDC bin31

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: GDC bin31

ncbi_submitter: Monash University


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: uncultured Erysipelothrix sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Kasetsart University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_organism_name: Roseomonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Flavobacterium sp. XGLA_31

ncbi_submitter: Hannam University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Shewanella baltica OS678

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Sediminicola sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Hong Kong: Telegraph Bay

ncbi_isolation_source: fingertip

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: India

ncbi_isolation_source: Leachate

ncbi_organism_name: Ignatzschineria sp. RMDPL8A

ncbi_submitter: National Centre for Cell Science


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0661

ncbi_submitter: Broad Institute


ncbi_country: China: Sichuan

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Borreliella valaisiana

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_organism_name: Streptomyces sp. NPDC005877

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Desulfobulbus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: Kansas

ncbi_isolation_source: Mouse fibroblast; L929

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: University of Kansas


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG12805

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: University of California Davis


ncbi_country: Austria

ncbi_isolation_source: wound

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: AGES


ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Italy: Lecco

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_country: Israel: Ramat HaNadiv

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Weizmann Institute


ncbi_country: India: Mumbai

ncbi_isolation_source: Pus/exudate

ncbi_submitter: Jawaharlal Institute of Postgraduate Medical Education and Research


ncbi_country: Peru: Lima

ncbi_isolation_source: liver

ncbi_submitter: Universidad Nacional Mayor de San Marcos

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Christiangramia sp.

ncbi_submitter: marine college, shandong university


gtdb_type_species_of_genus: t

ncbi_country: China

ncbi_isolation_source: Walls of a distilled spirit fermenting cellar

ncbi_organism_name: Lapidilactobacillus concavus DSM 17758

ncbi_submitter: Shanghai Majorbio


ncbi_isolation_source: human blood of bacteremia patient

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Bacillus cereus group sp. BceL071

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL071


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: ProBone


ncbi_organism_name: Dialister succinatiphilus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Peking

ncbi_isolation_source: tissue sample

ncbi_organism_name: Serratia marcescens

ncbi_submitter: China Medical University


ncbi_organism_name: Petrimonas sp.

ncbi_submitter: University of Utah


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: Maryland

ncbi_organism_name: Haemophilus parahaemolyticus

ncbi_strain_identifiers: CCUG 3716

ncbi_submitter: TAILORED-Treatment project


ncbi_isolation_source: Broviac blood

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Missouri

ncbi_submitter: Broad Institute


ncbi_country: Spain

ncbi_isolation_source: water

ncbi_organism_name: Salinivibrio sp. ML323

ncbi_submitter: Universidad de Sevilla


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Wilmar International Limited


ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: South Africa

ncbi_isolation_source: termites

ncbi_organism_name: Pantoea vagans

ncbi_submitter: Forestry and Agricultural Biotechnology Institute


ncbi_country: Poland: Bialowieza National Park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Bialystok


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Genskey


ncbi_isolate: SPRUCE 270

ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_strain_identifiers: SPRUCE 270

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: China: Wenzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: School of Laboratory Medicine and Life Sciences


ncbi_submitter: California Department of Public Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Adelaide


ncbi_country: China: Shenzhen

ncbi_isolation_source: wound

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Pectobacterium sp. CHL-2024

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Institute of Animal Husbandry and Veterinary, Hubei Academy of Agricultural Sciences


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Candidatus Brevefilum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Brevifilum;x__environmental samples;s__uncultured Candidatus Brevefilum sp.


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: Sultan Qaboos University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CHU Arnaud de Villeneuve Montpellier


ncbi_organism_name: Paraburkholderia megapolitana

ncbi_submitter: University of Illinois at Chicago


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Actinoplanes sp. CA-051413

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: not available

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: EPFL


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0090

ncbi_submitter: Broad Institute


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1102


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: Duke University


ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Eubacterium sp. AF16-48

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. AF16-48


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Dysgonomonas sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Peptoniphilus sp.

ncbi_submitter: EMG


ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium sp. HMSC078C09

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 2

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: University of Wyoming


ncbi_organism_name: Bartonella tamiae Th239


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Venezuela: Lara; Quebrada de Oro

ncbi_isolation_source: soil

ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Instituto de Salud Carlos III


ncbi_country: Turkey

ncbi_isolation_source: Orontes river

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Kenya

ncbi_organism_name: Clostridiales bacterium UBA4706

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Andrey V Karlyshev


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Public Health England


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: water

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ GmbH


ncbi_organism_name: Legionella spiritensis

ncbi_strain_identifiers: Bibb HSH-9

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Desulfocapsaceae bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12826

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC048606

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA

ncbi_isolation_source: pepper

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidade de Sao Paulo


ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S137

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S137


ncbi_organism_name: Bordetella pertussis B1193

ncbi_submitter: RIVM


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_submitter: Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aurantiaca


ncbi_organism_name: Escherichia coli

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_isolation_source: Human saliva

ncbi_organism_name: Prevotella jejuni

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus oris

ncbi_submitter: University of Georgia


ncbi_country: Portugal: Oporto

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: REQUIMTE-UCIBIO. Faculdade de Farmacia da Universidade do Porto.


ncbi_country: France: Villejuif

ncbi_organism_name: Enterococcus hirae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Methylophaga sp.


ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae MU_NG9

ncbi_submitter: Read Laboratory, Emory University


ncbi_organism_name: uncultured Holosporaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-5760

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Flavobacteriia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;x__environmental samples;s__uncultured Flavobacteriia bacterium


ncbi_organism_name: uncultured Granulicatella sp.


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Campaea margaritaria


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Enterococcus lemanii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Africa: Pretoria

ncbi_submitter: University of KwaZulu Natal


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: Houston

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: USA: Florida

ncbi_isolation_source: Strawberry leaf

ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: Clemson University


ncbi_country: Estonia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Woeseia sp.


ncbi_isolation_source: porcine rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0088

ncbi_submitter: Broad Institute


ncbi_isolation_source: Human fecal samples

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: Germany: Rhineland Palatine

ncbi_isolation_source: Grape must

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_strain_identifiers: Fth-Must

ncbi_submitter: Robert Koch Insitute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chifeng Center for Disease Control and Prevention


ncbi_organism_name: Calidifontibacter indicus

ncbi_submitter: BGI Research


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Mycoplasma sp. 3118

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Sporolactobacillus shoreicorticis

ncbi_strain_identifiers: TISTR 2466

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_submitter: Rural Development Administration


ncbi_isolate: not applicble

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: 667;not applicble

ncbi_submitter: Wroclaw University of Environmental and Life Sciences


ncbi_organism_name: Streptomyces sp. NPDC058476

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Brucella pseudintermedia

ncbi_submitter: University of Bern


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chattogram Veterinary and Animal Sciences University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Negativicutes bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;x__environmental samples;s__uncultured Negativicutes bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Afghanistan

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Limosilactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agricultural University


ncbi_country: China

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Ecuador

ncbi_isolation_source: Osteomyelitis

ncbi_organism_name: Staphylococcus aureus DAR5852

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG14624

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Padova


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: Antarctica

ncbi_isolation_source: freshwater Antarctic lake

ncbi_organism_name: Flavobacterium hibernum

ncbi_submitter: GCAT-SEEK


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab arm

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_country: Denmark: Randers

ncbi_isolation_source: activated sludge from Rand_18-Q3-R56-63

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: Xinjiang Academy of Agriculture Science


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. cmx-10-25

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: USA: Municipal Pensacola Beach; FL

ncbi_isolation_source: beach sand

ncbi_organism_name: Hyphomonadaceae bacterium UBA7638

ncbi_submitter: University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: USA: FL Keys

ncbi_isolation_source: coral tissue

ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: NOAA/UM


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Sutterellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Qinghai

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_country: Austria

ncbi_isolation_source: a wipe in the treatment room

ncbi_organism_name: Sphingomonas panni

ncbi_submitter: JIUJIANG UNIVERSITY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Roseobacter litoralis

ncbi_submitter: marine college, shandong university


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Duncaniella muris


ncbi_assembly_name: Rumen uncultured genome RUG10515

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany: Golm

ncbi_isolation_source: root

ncbi_organism_name: Leifsonia sp. Root4

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Australia

ncbi_isolation_source: respiratory

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centre for Infectious Diseases and Microbiology - Public Health


ncbi_organism_name: Lactobacillus hominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Sichuan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Cupriavidus gilardii CR3

ncbi_submitter: Key Laboratory for Wetland Ecology and Vegetation Restoration of National Environmental Protection, Norhteast Normal Univesity, China


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Yakult Central Institute


ncbi_country: China: Urumqi

ncbi_organism_name: Sanguibacter suaedae

ncbi_submitter: Xinjiang Normal University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Case Western Reserve University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Veterinary Research Institute


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Teredinibacter turnerae

ncbi_submitter: Johns Hopkins Applied Physics Laboratory


ncbi_organism_name: Thiomicrorhabdus sp.

ncbi_submitter: Super-cutting-edge Grand and Advanced Research (SUGAR) Program, Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: ITQB NOVA


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_country: USA

ncbi_isolation_source: Cecal Young Chicken

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: CVM N46596F

ncbi_submitter: FDA


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Eumseong

ncbi_isolation_source: ginseng seedlings

ncbi_organism_name: Pseudomonas graminis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_submitter: Miguel Servet University Hospital


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Tibet

ncbi_isolation_source: Tibet kefir

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Beijing Technology and Business University


ncbi_country: Pakistan

ncbi_isolation_source: respiratory system

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: QUAID-I-AZAM UNIVERSITY ISLAMABAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Ghana: Tamale

ncbi_isolation_source: Mutton

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Cedecea neteri

ncbi_submitter: SC


ncbi_organism_name: Pigmentiphaga sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Endomicrobiaceae bacterium


ncbi_submitter: University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. STm3


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_country: Switzerland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-WM

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_organism_name: Empedobacter brevis

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: pork

ncbi_organism_name: Salmonella sp. YP34-2

ncbi_submitter: Yangzhou University


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: University Hospital Tuebingen


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Bacteriology, Graduate School of Medicine, Gunma University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: Canada: Toronto

ncbi_isolation_source: blood

ncbi_organism_name: Eikenella sp. NML96-A-049

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Mobiluncus curtisii ATCC 43063

ncbi_submitter: Baylor College of Medicine

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_organism_name: Peptostreptococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Fusobacterium necrophorum

ncbi_submitter: Forsyth Institute


ncbi_country: France: Strasbourg; Alsace region

ncbi_organism_name: Bartonella alsatica

ncbi_submitter: University Hospital Frankfurt, Goethe University, Institute for Medical Microbiology and Infection Control


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolate: Human

ncbi_strain_identifiers: Human

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Sphingobium sp. WW5

ncbi_submitter: University of Washington


ncbi_isolate: AOP25_B2_surf _bin _7

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP25_B2_surf _bin _7

ncbi_submitter: Genoscope


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Longimicrobiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Acinetobacter sp. AM3-2

ncbi_submitter: Guangdong Ocean University


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken blood-fed; lab-reared Aedes aegypti mosquito

ncbi_organism_name: Pseudomonas sp. ChxA

ncbi_strain_identifiers: ChxA

ncbi_submitter: University of Cincinnati


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Ruminococcus sp. UBA4335

ncbi_submitter: University of Queensland


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: National Veterinary Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Molade


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Nankai University


ncbi_country: China: Zhejiang

ncbi_isolation_source: laboratory

ncbi_submitter: zhejiang University


ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_organism_name: Sphingobium yanoikuyae ATCC 51230

ncbi_submitter: Broad Institute


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Tsinghua University


ncbi_country: Japan: Japan

ncbi_organism_name: Pseudomonas amygdali pv. lachrymans

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. lachrymans


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Tuscany

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: National Research Council (C.N.R.)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: freshwater MAG --- KT_bin-1425

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella sp. GB_Kp049

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Cetobacterium somerae


ncbi_country: Norway

ncbi_isolation_source: eye

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Germany: Freiburg

ncbi_organism_name: Bartonella henselae

ncbi_submitter: University Hospital, Goethe University Frankfurt am Main, Germany


ncbi_organism_name: Pedobacter africanus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia marmotae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Salmonella sp. NW820

ncbi_submitter: Sichuan University


ncbi_organism_name: Bosea lupini

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_isolation_source: river sediment

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: College of Environmental Sciences and Engineering


ncbi_organism_name: Saccharopolyspora erythraea NRRL 2338

ncbi_strain_identifiers: NRRL 2338

ncbi_submitter: Department of Biochemistry, University of Cambridge


ncbi_organism_name: Enterobacter hormaechei subsp. oharae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. oharae


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_country: China: Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Cardiobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Anaerovoracaceae bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Escherichia coli


ncbi_submitter: CLUE-TERRA


ncbi_country: Sweden

ncbi_isolation_source: lymph galnd

ncbi_organism_name: Mycobacterium tuberculosis BTB05-660

ncbi_submitter: Broad Institute


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_country: Nepal: Kanti

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Armed Forces Research Institute of Medical Sciences (AFRIMS)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Methylibium sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Capnocytophaga ochracea

ncbi_submitter: The University of Hong Kong


ncbi_country: Italy

ncbi_isolation_source: rabbit fecal sample

ncbi_organism_name: Bifidobacterium italicum

ncbi_submitter: University of Parma


ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: CDC


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Ce119

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Spain: Tous

ncbi_isolation_source: freshwater reservoir

ncbi_organism_name: Synechococcus lacustris str. Tous

ncbi_strain_identifiers: Tous

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Streptomyces coelicoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: MD

ncbi_isolation_source: Poultry

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: PA

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: UNIVERSITY OF PENNSYLVANIA


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Listeria monocytogenes FSL J2-071

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes FSL J2-071


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_country: Puerto Rico: Patillas

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia sp. Bp9031

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Cellulosilyticaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Planctomycetaceae bacterium UBA5059

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Mycoplasmopsis columbinasalis

ncbi_submitter: SC


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Germany

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Brucella anthropi

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_isolation_source: Blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Ruijin Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Leeuwenhoekiella palythoae

ncbi_submitter: Xiamen University


ncbi_organism_name: Corynebacterium xerosis

ncbi_submitter: University of Minnesota


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_organism_name: Paraburkholderia bannensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Sand

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Nippon veterinary and life sciense university


ncbi_country: France: Tours

ncbi_isolation_source: carriage

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Serratia nevei

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces longisporoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: BGI


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Serratia odorifera

ncbi_submitter: SC


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Austria: Vienna

ncbi_isolation_source: Wound swab

ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: AGES


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: India: Meghalaya

ncbi_isolation_source: pig fecal material

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: ICAR-National Institute of Veterinary Epidemiology and Disease Informatics


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_submitter: Swansea University


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: candidate division WWE3 bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Russia: Lake Gorkoye; Novosibirsk region

ncbi_isolation_source: sample from sludge

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: THE INSTITUTE OF CYTOLOGY AND GENETICS


ncbi_organism_name: Peribacillus castrilensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_isolation_source: fecal material

ncbi_organism_name: Stenotrophomonas sp. 9(2022)

ncbi_submitter: University of Wisconsin-La Crosse


ncbi_country: USA: New Jersey

ncbi_organism_name: Pantoea septica

ncbi_submitter: University of Pretoria


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Environmental; soil

ncbi_organism_name: Burkholderia anthina

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China: WuHan

ncbi_isolation_source: wholesale market

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Ireland

ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: University College Cork


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces rochei

ncbi_strain_identifiers: NRRL B-2410

ncbi_submitter: USDA/ARS/NCAUR


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_country: USA: California

ncbi_submitter: University of Maryland, College Park