ncbi_organism_name: Brucella anthropi


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Colombia: Bogota

ncbi_genome_representation: full

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Paenalcaligenes sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudomonas sp. UYEF15

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_level: Scaffold

ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Frigoribacterium sp. CFBP 8754

ncbi_submitter: INRAE


gtdb_representative: t

ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: Glacial sediment

ncbi_organism_name: Cryobacterium sp. PH31-L1

ncbi_submitter: Yildiz Technical University


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Legionellales bacterium

ncbi_submitter: The University of Auckland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MN

ncbi_isolation_source: skinless hot dog

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Klebsiella sp. GG_Kp138

ncbi_submitter: Max Rubner-Institut


ncbi_country: Atlantic Ocean: near Brazil

ncbi_isolation_source: ocean water

ncbi_organism_name: Endozoicomonas arenosclerae

ncbi_refseq_category: reference genome

ncbi_submitter: UFRJ

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 79 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Helicobacter pylori SA301A

ncbi_submitter: MHH


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_assembly_name: freshwater MAG --- MJ111018A_bin-480

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: South Korea

ncbi_isolation_source: dried fermented soybeans (Meju)

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CHUNG ANG UNIVERSITY


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Aliicoccus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: soil

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Thiobacillus sp. UBA2186

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: uncultured Ancrocorticia sp.


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Florida

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_isolation_source: unknown

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Dorea longicatena

ncbi_submitter: BGI-Shenzhen


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Wound Thigh Secretion

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0621

ncbi_submitter: Broad Institute


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-62

ncbi_submitter: Arkin Lab


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: France: Hopital Saint-Louis

ncbi_organism_name: Enterococcus faecium EnGen0162


ncbi_assembly_level: Complete Genome

ncbi_country: Atlantic Ocean: Scotia Sea

ncbi_isolation_source: the marine sediment

ncbi_organism_name: Cobetia amphilecti

ncbi_submitter: First Institute of Oceanography


ncbi_organism_name: Escherichia coli T426


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Dalian

ncbi_isolation_source: sauerkraut

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Dalian Medical University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shandong University


ncbi_country: India

ncbi_organism_name: Mycolicibacterium acapulense

ncbi_submitter: JCVI


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Ontario

ncbi_isolate: DpisSym

ncbi_isolation_source: Beetle Malpighian tubules

ncbi_organism_name: Enterobacteriaceae endosymbiont of Donacia piscatrix

ncbi_strain_identifiers: DpisSym

ncbi_submitter: Johannes Gutenberg University Mainz


ncbi_isolation_source: termite gut

ncbi_organism_name: Desulfovibrionaceae bacterium UBA930

ncbi_submitter: University of Queensland


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: AAFC


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_assembly_name: Rumen uncultured genome RUG10862

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bifidobacterium choerinum DSM 20434

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: CSIR-Indian Institute of Toxicology Research


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: EMG


ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium leguminosarum;x__Rhizobium leguminosarum bv. trifolii;x__Rhizobium leguminosarum bv. trifolii WSM1325


ncbi_organism_name: Enterococcus sp. FDAARGOS_553

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0945

ncbi_submitter: Broad Institute


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Enterococcus hirae


ncbi_country: Belgium

ncbi_organism_name: Xanthomonas fragariae LMG 25863

ncbi_submitter: Institute of Agricultural and Fisheries Research


ncbi_isolation_source: Eelgrass; Zostera marina

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Nippon veterinary and life sciense university


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: University of Southampton


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycoplasma sp. 005V

ncbi_submitter: Institute of Microbiology


ncbi_submitter: Nanjing Agricultural University


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CML 13

ncbi_submitter: University of Wyoming


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Lachnospirales bacterium


ncbi_assembly_name: not applicable

ncbi_organism_name: Weissella soli

ncbi_submitter: KU - University of Copenhagen


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Rickettsia slovaca

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridium sp.

ncbi_submitter: INRA


ncbi_country: Denmark

ncbi_isolation_source: Milk

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Chr. Hansen


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Deinococcus radiodurans

ncbi_submitter: Korea Atomic Energy Research Institute


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Thiolinea sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: South Africa: Cape Town; University of the Western Cape; IMBM

ncbi_isolation_source: Methyl methane sulphonate mutant strain

ncbi_organism_name: Planococcus sp. CP5-4_YE

ncbi_submitter: Institute for Microbial Biotechnology and Metagenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Planococcus;x__unclassified Planococcus (in: firmicutes);s__Planococcus sp. CP5-4_YE


ncbi_assembly_name: freshwater MAG --- Loclat_bin-14392

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: Small intestine

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_organism_name: Clostridium celatum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus milleri

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Nocardia ignorata

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Turicimonas muris


ncbi_country: Japan

ncbi_isolation_source: Dental biofilm

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_country: USA: Moline; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Switzerland

ncbi_isolation_source: nasal swab sample

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Bern


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NBC_00311

ncbi_submitter: Technical University of Denmark


ncbi_country: United Kingdom

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_country: Canada: Burnaby

ncbi_isolation_source: Parkland forest soil (upper A horizon)

ncbi_organism_name: Paraburkholderia madseniana

ncbi_submitter: Cornell University


ncbi_organism_name: Bacillus sp. N3536

ncbi_submitter: NEB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. N3536


ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Russia: St.Petersburg

ncbi_isolation_source: wound

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Institute of Experimental Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Santa Barbara Zoo

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: larvae from a hatchery

ncbi_organism_name: Vibrio coralliilyticus

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Pakistan

ncbi_isolation_source: water

ncbi_organism_name: Ectopseudomonas oleovorans

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus sp. HMSC36C04

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Norway

ncbi_isolation_source: soil

ncbi_organism_name: Luteolibacter arcticus

ncbi_strain_identifiers: CCTCC AB 2014275

ncbi_submitter: Beijing Forestry University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: EMG


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_country: China

ncbi_isolation_source: BALF

ncbi_submitter: China-Japan Friendship Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_organism_name: Enterococcus faecalis str. Symbioflor 1

ncbi_strain_identifiers: Symbioflor 1

ncbi_submitter: JLU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis;x__Enterococcus faecalis str. Symbioflor 1


ncbi_isolation_source: transconjugant mating experiments

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Geobacillus sp. FSL K6-0789

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus;x__unclassified Geobacillus;s__Geobacillus sp. FSL K6-0789


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0077

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia: Brisbane; QLD; University of Queensland

ncbi_isolation_source: AOM-Mn bioreactor day 314

ncbi_organism_name: Desulfuromonas sp.

ncbi_submitter: University of Queensland


ncbi_country: Mediterranean Sea

ncbi_isolation_source: collected at a depth of 1 meter; isolated by plating on solid media

ncbi_organism_name: Dokdonia sp. MED134

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_country: China: Shenzhen

ncbi_isolation_source: linezolid derivative isolate of Streptococcus agalactiae SG2

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Affiliated Shenzhen Sixth Hospital of Guangdong Medical University


ncbi_country: China: Qinghai Province

ncbi_organism_name: Planococcus shenhongbingii

ncbi_submitter: China CDC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Cystic fibrosis patient

ncbi_organism_name: Pandoraea anhela

ncbi_submitter: LM-UGent


ncbi_organism_name: Streptomyces avermitilis

ncbi_submitter: Biological Resource Center


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Vescimonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Sphingobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Variovorax sp. RT4R15

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx22233

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Listeria innocua

ncbi_submitter: University of Wyoming


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: soft tissue

ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto de Quimica


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2623620579 annotated assembly

ncbi_organism_name: Cellulosimicrobium cellulans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: DS-I Africa


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Gemmatimonadota bacterium


ncbi_country: China: Shijiazhuang

ncbi_organism_name: Listeria ivanovii subsp. ivanovii

ncbi_submitter: Chinese Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria ivanovii;sb__Listeria ivanovii subsp. ivanovii


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Dehalococcoidia bacterium UBA5760

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: seawater surrounding coral Acropora digitifera under thermal stress

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_country: USA: LA

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Achromobacter animicus


ncbi_organism_name: Thermoanaerobacter indiensis BSB-33

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Switzerland: lake near Neuchatel

ncbi_isolation_source: Surface layer of sediment from a small eutrophic lake near Neuchatel; Switzerland

ncbi_organism_name: Hydrogenibacillus schlegelii

ncbi_submitter: Harvard Medical School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;f__Bacillales Family X. Incertae Sedis;g__Hydrogenibacillus;s__Hydrogenibacillus schlegelii


ncbi_country: Australia: Blue mountains

ncbi_isolate: BU AG58

ncbi_organism_name: Borrelia sp. BU AG58

ncbi_strain_identifiers: BU AG58

ncbi_submitter: CSIRO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;f__Borreliaceae;g__Borrelia;x__unclassified Borrelia;s__Borrelia sp. BU AG58


ncbi_organism_name: Viridibacillus sp. FSL H8-0110

ncbi_submitter: Penn State


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_country: South Korea: Siheung

ncbi_isolation_source: Salt marsh

ncbi_organism_name: Shewanella salipaludis

ncbi_submitter: Sungkyunkwan University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_submitter: University of Toronto


ncbi_country: USA: Baltimore; Maryland

ncbi_isolation_source: brown shark kidney

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Naval Research Laboratory


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: Hospital Universitario Central de Asturias (Oviedo)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NPDC088341

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Northern Arizona University


ncbi_country: Norway

ncbi_isolation_source: jaw

ncbi_organism_name: Tenacibaculum maritimum

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Bacillus sp. FSL R5-0811

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R5-0811


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Erythrobacteraceae bacterium UBA1460

ncbi_submitter: University of Queensland


ncbi_country: China: Zhejiang province

ncbi_organism_name: Pseudomonas triclosanedens

ncbi_submitter: Zhejiang University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: the seqafrica consortium


ncbi_assembly_name: IMG-taxon 2596583511 annotated assembly

ncbi_organism_name: Thiohalorhabdus denitrificans

ncbi_strain_identifiers: HL 19

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Phocaeicola vulgatus ATCC 8482

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus;x__Phocaeicola vulgatus ATCC 8482


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Jiangxi Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Chile: Puerto Montt

ncbi_isolation_source: kidney from diseased; vaccinated; freshwater Atlantic salmon

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: ADL Diagnostic Chile Ltda


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Treponema succinifaciens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Zhengzhou

ncbi_isolation_source: Powdered Infant Formula

ncbi_organism_name: Cronobacter sp. HA18003

ncbi_submitter: Henan Center for Diease Control and Prevention


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Danny from private home

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AnimalBiome


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: Abdominal ascites fluid

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Rochester


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: University of Oklahoma Health Sciences Center Medical Center

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Oregon Health and Science University


ncbi_organism_name: Oceanococcaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Parafrigoribacterium mesophilum

ncbi_submitter: Sun Yat-sen University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2730350

ncbi_submitter: IGS


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Staphylococcus saccharolyticus

ncbi_submitter: University hospital Lubeck


ncbi_country: China

ncbi_isolation_source: paddy soil

ncbi_organism_name: Crenobacter oryzisoli

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterococcus sp. GMD4E

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H38226

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: Australia: Newcastle

ncbi_organism_name: Dialister sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Bangladesh: Mathbaria

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: freshwater

ncbi_organism_name: Novosphingobium sp. Chol11

ncbi_submitter: CEBITEC


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Flavobacterium sp. Root186

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Psychrosphaera haliotis

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Qingdao Agricultural University


ncbi_country: Canada: Manitoba

ncbi_isolation_source: Ankle wound

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: South Korea: Incheon

ncbi_isolation_source: tidal flats

ncbi_organism_name: Deltaproteobacteria bacterium IMCC39146

ncbi_submitter: Inha university

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium IMCC39146


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Universidade de Sao Paulo


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_country: China: Shaoguan

ncbi_isolation_source: Humified soil

ncbi_organism_name: Firmicutes bacterium FC7

ncbi_submitter: Guilin Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium FC7


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC059876

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Singapore

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: Singapore General Hospital


ncbi_country: France

ncbi_isolation_source: urine

ncbi_submitter: Rennes Hospital


ncbi_organism_name: Neisseria lactamica

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Anhui Medical University; Beijing Institute of Microbiology and Epidemiology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ottawa; Ontario

ncbi_isolation_source: air

ncbi_organism_name: Buchnera aphidicola (Aphis nasturtii)

ncbi_strain_identifiers: Ana

ncbi_submitter: University of Hawaii


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptomyces sp. NPDC015414


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV244

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acetomicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas sp. SJZ101

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_country: China: Lake Dasugan

ncbi_isolation_source: saline lake

ncbi_organism_name: Aquisalinus flavus

ncbi_submitter: FACULTY OF SCIENCE, UNIVERSITI TEKNOLOGI MALAYSIA


ncbi_organism_name: uncultured Johnsonella sp.


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Japan

ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: Denmark: Lindholm Hoeje; viking burial ground

ncbi_organism_name: Streptomyces sp. NBC_01443

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Muricomes intestini

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Solobacterium sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: Traorella massiliensis

ncbi_submitter: addis ababa university


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Xanthomonas campestris pv. fici

ncbi_strain_identifiers: NCPPB 3797

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: Hadley; MA

ncbi_isolation_source: corn field soil

ncbi_organism_name: Cupriavidus pauculus

ncbi_submitter: Loyola University Chicago


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Acetobacter syzygii NRIC 0483

ncbi_strain_identifiers: NRIC 0483

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Cloacibacillus porcorum

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-1 day 1372

ncbi_organism_name: Petrotoga sp.

ncbi_submitter: The Ohio State University


ncbi_country: Italy: Lazio

ncbi_isolation_source: formula feed

ncbi_organism_name: Clostridium botulinum B2 128

ncbi_submitter: Army Medical and Veterinary Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum B2 128


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_assembly_name: Salmonella enterica CVM N43478 v1.0

ncbi_country: USA: OR

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: the seqafrica consortium


ncbi_country: China: Jiangsu

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Yangzhou University


ncbi_country: Australia

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: US Department of Agriculture


ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Universidad de los Andes


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG11272

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Alberta

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Sardar Patel University, V.V.Nagar


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Toe web space swab

ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Acinetobacter sp. YH12111

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0003

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Houston


ncbi_country: China

ncbi_isolation_source: ascites

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_assembly_name: freshwater MAG --- Umea3p1_bin-1515

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: burned soil

ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Colorado State University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Hebei; Qinhuangdao

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: LEADING BIO-AGRICULTURAL Co. Ltd


ncbi_organism_name: Caldilinea sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG13811

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany: Aachen

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_isolation_source: coastal surface water

ncbi_organism_name: Roseivirga sp. E12


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: P. aeruginosa X9820

ncbi_country: USA: New York; NY

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MSKCC


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Monoglobaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Boston College


ncbi_organism_name: Vibrio scophthalmi

ncbi_submitter: Ewha Womans University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Patescibacteria group bacterium UBA2106

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA2106


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: Scarlet fever

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: France: lac Boufflers

ncbi_isolation_source: fresh water

ncbi_organism_name: Dickeya parazeae

ncbi_submitter: Sorbonne University


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Ruminococcus sp. UBA1394


ncbi_organism_name: Chlamydia trachomatis L2b/8200/07

ncbi_submitter: Sanger Institute


ncbi_assembly_name: freshwater MAG --- Loc081215-9m_bin-0791

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Duke University


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 42 (4-2100061)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 42 (4-2100061)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Oscillibacter sp. KLE 1728

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Caecum

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Tianjin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Disease


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Nocardiopsis rhodophaea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__environmental samples;s__uncultured Candidatus Peregrinibacteria bacterium


ncbi_organism_name: Dysgonomonas capnocytophagoides

ncbi_submitter: University of Copenhagen


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Brazil: Buzios; Rio de Janeiro

ncbi_isolation_source: Siderastrea stellata

ncbi_organism_name: Halopseudomonas aestusnigri

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Ruminococcus] lactaris


ncbi_organism_name: Streptomyces pristinaespiralis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: MIT

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: MIT


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Parasutterella secunda

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Noviherbaspirillum album

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_country: Switzerland: Geneva

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Geneva University Hospital


ncbi_isolate: HCA3 bin9

ncbi_organism_name: Prevotella sp.

ncbi_strain_identifiers: HCA3 bin9

ncbi_submitter: China Agricultural University


ncbi_country: Peru

ncbi_submitter: SC


ncbi_organism_name: uncultured Kangiella sp.


ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Dr. G.M. Taori, Central India Institute of Medical Sciences


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Rhodospirillaceae bacterium UBA2667

ncbi_submitter: University of Queensland


ncbi_country: India: Bengaluru

ncbi_isolation_source: Deep nasal sample of sheep with Severe respiratory infection

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: PMS 2

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV254

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_name: IMG-taxon 2687453678 annotated assembly

ncbi_organism_name: Variovorax sp. OV700

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Chile: Magallanes

ncbi_organism_name: Tenacibaculum piscium

ncbi_submitter: Universidad Bernardo O`Higgigins


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Czech Republic

ncbi_isolation_source: clinical sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, Charles University


ncbi_country: United Kingdom

ncbi_isolation_source: oral swab

ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: King's College London


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Palmer LTER


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-014

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Bifidobacterium thermophilum

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: SRCAMB


ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_organism_name: Acinetobacter guillouiae

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CSIR- National Institute of Oceanography


ncbi_organism_name: uncultured Proteiniphilum sp.


ncbi_organism_name: Mycobacterium sp. SMC-16

ncbi_submitter: Samsung Medical Center


ncbi_organism_name: Sorangium sp. So ce887

ncbi_strain_identifiers: So ce887

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce887


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_strain_identifiers: Vph- CEB B4

ncbi_submitter: University of the Philippines Diliman


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0919

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Desulfonatronovibrio sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Candidatus Neoruminococcus faecicola

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Neoruminococcus;s__Candidatus Neoruminococcus faecicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Neoruminococcus;s__Candidatus Neoruminococcus faecicola


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: South China Sea

ncbi_organism_name: Aquibium oceanicum

ncbi_submitter: Zhejiang University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_organism_name: Faecalimonas umbilicata

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Corynebacterium vitaeruminis


ncbi_isolation_source: metagenome

ncbi_organism_name: Flavonifractor sp. An112


ncbi_isolation_source: wastewater

ncbi_organism_name: Acinetobacter sp. SCLZS86

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Moheibacter sp.


ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_organism_name: Helicobacter pylori Hp P-26

ncbi_strain_identifiers: Hp P-26

ncbi_submitter: Institute for Genome Sciences


ncbi_country: France: Lyon

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Universite Claude Bernard Lyon 1


ncbi_organism_name: bacterium


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Enterobacter rongchengensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola sartorii


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis BTB05-013

ncbi_submitter: Broad Institute


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_organism_name: Lactobacillus jensenii IM11

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Korea:Iksan

ncbi_isolation_source: kimchi

ncbi_organism_name: Leuconostoc gelidum subsp. aenigmaticum

ncbi_submitter: Kimchi research center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;x__Leuconostoc gelidum group;s__Leuconostoc gelidum;sb__Leuconostoc gelidum subsp. aenigmaticum


ncbi_country: Australia: Cairns

ncbi_isolation_source: Pooled mosquitoes from single mosquito trap

ncbi_organism_name: Wolbachia endosymbiont of Aedes aegypti

ncbi_submitter: Monash University


ncbi_organism_name: Sphingobacterium sp. PM2-P1-29

ncbi_submitter: UNIVERSITY OF MINNESOTA


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Flavobacteriia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Weissella confusa

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Austria

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Enterobacterales bacterium

ncbi_submitter: University of Konstanz


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: EMG


ncbi_country: Cuba

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WAC05458

ncbi_submitter: McMaster University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Solobacterium sp.


ncbi_country: Japan:Tokyo; Meguro-ku

ncbi_submitter: Toho University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sweden: Gavle

ncbi_isolation_source: wound secretion

ncbi_organism_name: Acidovorax temperans

ncbi_submitter: University of the Sunshine Coast


ncbi_country: India

ncbi_isolation_source: Monuments

ncbi_organism_name: Scytonema millei VB511283

ncbi_submitter: Indian Institute Of Chemical biology


ncbi_country: Spain

ncbi_isolation_source: Medical

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Investigacion Sanitaria y Biomedica de Alicante


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Antecubital fossa swab

ncbi_organism_name: Brachybacterium muris

ncbi_submitter: University of Wisconsin - Madison


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: Blood culture

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aerococcus viridans

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA

ncbi_isolation_source: patient

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1444


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptomyces bobili

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_isolation_source: stool

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gemmatimonadales bacterium UBA7826

ncbi_submitter: University of Queensland


ncbi_isolation_source: meat

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: USA: Arkansas

ncbi_isolation_source: vegetable

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0519S

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: wenzhou Medical university


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Tap water/shower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Thiothrix sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Japan

ncbi_organism_name: Odoribacter laneus

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Clostridium disporicum


ncbi_country: Egypt

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: CIRM-BIA 913

ncbi_submitter: Brigham Young University


ncbi_organism_name: Streptomyces beijiangensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Nonomuraea polychroma

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces microflavus


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hormaechei


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC058280


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Eubacteriales bacterium KG127

ncbi_submitter: University of Florida


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Corynebacterium uberis

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Colon

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Qingdao

ncbi_isolation_source: sediment

ncbi_organism_name: Alginatibacterium sediminis

ncbi_strain_identifiers: ALS 81

ncbi_submitter: qing dao institute of bioenergy and bioprocess technology


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_assembly_name: freshwater MAG --- KR2_bin-1038

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: National Institute of Health, Department of Medical Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: stool sample

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus 930918-3

ncbi_submitter: University of Central Florida


ncbi_organism_name: Fumia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia obeum


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Collinsella sp. 4_8_47FAA

ncbi_submitter: Broad Institute


ncbi_country: Australia: Fremantle

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: The University of Queensland


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: SAHMRI


ncbi_organism_name: Paraburkholderia sp. J10-1

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Harvard Medical School


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Vampirovibrionales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile CD111

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Hand Laceration

ncbi_organism_name: Mycobacterium sp. IDR2000157661

ncbi_submitter: NYDOH


ncbi_organism_name: Segatella hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Guangxi

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionibacterium;x__unclassified Propionibacterium;s__Propionibacterium sp. oral taxon 192;x__Propionibacterium sp. oral taxon 192 str. F0372


ncbi_country: USA: PA

ncbi_isolation_source: feces (Sus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: SponGES


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia sp. AF02-12

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: Tunisia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: deep-sea sponge Neamphius huxleyi

ncbi_organism_name: Sphingopyxis sp. UBA6723


ncbi_organism_name: Altererythrobacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: University of Malaya


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Washington DC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 561362 9-7


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Brucella anthropi

ncbi_submitter: Radboud University Nijmegen


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_country: Mauritius

ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: University of California at Davis


ncbi_country: USA: Michigan

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Case Western Reserve University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01446

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01446


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: MER 189

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: bacterium

ncbi_submitter: Biology Centre CAS


ncbi_country: China

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: housed macaque gastric juice

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Olleya sp. ITB9

ncbi_submitter: Tokyo University of Marine Science and Technology


ncbi_assembly_name: Rumen uncultured genome RUG13858

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: AK

ncbi_isolation_source: Choana

ncbi_organism_name: Escherichia sp. MOD1-EC6154

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__environmental samples;s__uncultured Poribacteria bacterium


ncbi_country: USA: MD

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Propionibacterium acidifaciens

ncbi_submitter: Hospital Sirio-Libanes


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-137

ncbi_submitter: Broad Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Azospirillum sp.

ncbi_submitter: AAFC


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.214 MAG

ncbi_isolate: bin.214 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_strain_identifiers: bin.214 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_country: USA: Maryland

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: ITQB NOVA


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Catheter tip

ncbi_organism_name: Serratia odorifera

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces canus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Faecalibacillus faecis

ncbi_submitter: Washington University School of Medicine


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: University Hospital Tuebingen


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus pettenkoferi


ncbi_country: Brazil

ncbi_isolation_source: Steak with Sauce

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Switzerland: Bern

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Applied Sciences of Western Switzerland hepia


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Mahidol University


ncbi_organism_name: Demequina sp. NBRC 110057

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_organism_name: Lactobacillus intestinalis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Indonesia: Jakarta

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces albireticuli

ncbi_strain_identifiers: NRRL B1670

ncbi_submitter: Joint Bioenergy Institute