ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Niger

ncbi_genome_representation: full

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 61106

ncbi_submitter: IGS


ncbi_assembly_level: Contig

ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Gordonibacter urolithinfaciens

ncbi_submitter: University of Chicago


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf088

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Amygdalobacter nucleatus

ncbi_submitter: Fred Hutchinson Cancer Center


ncbi_organism_name: Salmonella enterica


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 96-3

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LAU


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_organism_name: Brevundimonas nasdae

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Huazhong Agricultural University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea water

ncbi_organism_name: Marinobacter sp. DY40_1A1

ncbi_submitter: State Key Laboratory Breeding Base of Marine Genetic Resources


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Clostridium sporogenes ATCC 15579

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Huaxiibacter chinensis

ncbi_submitter: Gladstone Institutes


ncbi_organism_name: uncultured Neisseria sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces mutabilis

ncbi_refseq_category: reference genome

ncbi_submitter: UAEU


ncbi_organism_name: uncultured Robiginitomaculum sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces griseorubiginosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Microtetraspora malaysiensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-b_bin-614

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guangxi University of Chinese Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Candidatus Nanogingivalis sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanogingivales;f__Candidatus Nanogingivalaceae;g__Candidatus Nanogingivalis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanogingivales;f__Candidatus Nanogingivalaceae;g__Candidatus Nanogingivalis;x__unclassified Candidatus Nanogingivalis;s__Candidatus Nanogingivalis sp.


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium UBA757

ncbi_submitter: University of Queensland


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Chile: Puerto Montt

ncbi_isolation_source: skin

ncbi_organism_name: Tenacibaculum bernardetii

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: Universite Laval


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Campylobacter jejuni


ncbi_country: India: Gujarat

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_assembly_name: Rumen uncultured genome RUG11249

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: South Dakota

ncbi_isolation_source: Yates Shaft; SURF

ncbi_organism_name: Geobacillus sp. 47C-IIb

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: human

ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: Shimane Prefectural Institute of Public Health and Environmental Science


ncbi_country: Canada: Toronto

ncbi_organism_name: Lachnoanaerobaculum gingivalis

ncbi_submitter: Shared Hospital Laboratory


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lactobacillus johnsonii ATCC 33200

ncbi_submitter: BCM


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Rugosibacter sp.

ncbi_submitter: University of Oklahoma


ncbi_assembly_level: Chromosome

ncbi_country: Haiti: Cotes-de-Fer

ncbi_isolation_source: lesions on the lower abdomen

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_strain_identifiers: Haiti B

ncbi_submitter: Masaryk University, Faculty of Medicine


ncbi_organism_name: Citricoccus sp. NPDC079358

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: USA: DC

ncbi_isolation_source: Abscess

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: uncultured Pantoea sp.


ncbi_country: Canada: Shelburne County; NS

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Federal University of Sao Paulo


ncbi_country: Canada: Montreal

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: Greene County; Ohio

ncbi_isolation_source: groundwater well (0.1 _m fraction)

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium Gr01-1014_13


ncbi_country: Spain

ncbi_isolation_source: farm sample

ncbi_submitter: Universite Laval


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 2; 20cm depth; 2 days after second rain event (91mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokubacteria bacterium 13_2_20CM_2_70_11


ncbi_organism_name: Escherichia coli FVEC1412

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces


ncbi_isolation_source: intestinal contents

ncbi_organism_name: Neisseria chenwenguii

ncbi_submitter: China disease prevention and control center


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Treponema sp.

ncbi_submitter: INRA


ncbi_organism_name: Streptomyces brasiliscabiei

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Farm environmental

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_submitter: Shandong Provincial Center for Disease Control and Prevention


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Belgium

ncbi_isolation_source: lambic beer

ncbi_organism_name: Acetobacter indonesiensis

ncbi_submitter: university of Ghent


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC091299

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India

ncbi_isolation_source: milk bovine cow

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Urumqi

ncbi_isolation_source: saline-alkaline soil

ncbi_organism_name: Alkalihalobacillus deserti

ncbi_submitter: Xinjiang Normal University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_isolation_source: stool


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus OCMM6002

ncbi_submitter: Broad Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Switzerland: Schaffhausen;Barzheim

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Canada: Toronto

ncbi_isolation_source: Processed Cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: Australia: Orange

ncbi_isolation_source: urine

ncbi_submitter: Ausgem


ncbi_organism_name: Pseudarthrobacter oxydans

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Comamonas sp. lk

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Buckinghamshire

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin44

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MOJ bin44

ncbi_submitter: Monash University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Firmicutes bacterium AM41-11

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AM41-11


ncbi_organism_name: Bacteroides difficilis

ncbi_submitter: ocean university of china


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gaminara


ncbi_organism_name: uncultured Pirellula sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_isolate: AOP5_DX2_coeur _bin _6

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP5_DX2_coeur _bin _6

ncbi_submitter: Genoscope


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Sphaerospermopsis kisseleviana

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: University of Parma


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_submitter: China Agricultural University


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Azospirillum sp. 51_20


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_country: France

ncbi_isolation_source: sand

ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: NRRL BD-162

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1259

ncbi_submitter: Broad Institute


gtdb_type_species_of_genus: t

ncbi_organism_name: Paucimonas lemoignei

ncbi_submitter: SC


ncbi_organism_name: Maricaulaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: China: Nanchang; Poyang Lake

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Komeiliibacteriota;s__Candidatus Komeilibacteria bacterium CG_4_10_14_0_8_um_filter_37_78


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cepheid


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: China: Ningxia

ncbi_isolation_source: chicken cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USFDA


ncbi_isolation_source: in vitro culture

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: IMG-taxon 2599185232 annotated assembly

ncbi_organism_name: Caloramator fervidus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: USA: California; Eel River; South Fork Eel River between Leggett and Piercy

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Runella slithyformis

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Mycolicibacterium bacteremicum

ncbi_submitter: San Raffaele Scientific Institute


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab arm

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_country: USA: St. Louis

ncbi_isolation_source: Connective tissue

ncbi_organism_name: Acinetobacter variabilis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_assembly_name: Isolate 6

ncbi_submitter: Kalmar county hospital


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Japan

ncbi_isolation_source: not applicable

ncbi_organism_name: Borrelia sp. HM

ncbi_submitter: Joint Faculty of Veterinary Medicine, Yamaguchi University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: symptomatic inner bark

ncbi_organism_name: Brenneria goodwinii

ncbi_submitter: University of the West of England


ncbi_country: USA: Washington

ncbi_isolation_source: endo-cervical swab

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: Oregon State University


ncbi_country: Germany: Freising

ncbi_isolation_source: bile duct

ncbi_organism_name: Lactobacillus equicursoris

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: Thailand: Nongkhai; near Makhong River

ncbi_isolation_source: grasses cover soil from open highland

ncbi_organism_name: Lysobacter enzymogenes

ncbi_submitter: Chulalongkorn University


ncbi_assembly_name: genome

ncbi_country: China: Daye city; Hubei province

ncbi_isolation_source: iron mine of Hongshan

ncbi_organism_name: Actinotalea ferrariae CF5-4

ncbi_submitter: Huazhong Agricultural University


ncbi_country: South Africa: Free

ncbi_isolation_source: grassland soil

ncbi_organism_name: Williamsia muralis

ncbi_strain_identifiers: BULT 1.1

ncbi_submitter: University of Pretoria


ncbi_country: Germany

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Chicago


ncbi_country: Algeria: El-Tarf

ncbi_organism_name: Bradyrhizobium canariense

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Chr-Hansen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolate: NECK SKIN

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: NECK SKIN;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Cyanobacteria bacterium UBA3803

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA3803


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Hangzhou

ncbi_isolation_source: manure

ncbi_organism_name: Thermocrispum sp.

ncbi_submitter: zhejiang university


ncbi_country: Canada: Station Biologique des Laurentides (QC)

ncbi_isolation_source: tree leaf surface

ncbi_organism_name: Methylobacterium sp. E-041

ncbi_submitter: Universite du Quebec a Montreal


ncbi_organism_name: uncultured Methylotenera sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea

ncbi_organism_name: Salinimonas chungwhensis DSM 16280

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Aestuariivirgaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Dysgonomonas sp.


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Preputial swab

ncbi_organism_name: Actinobaculum suis

ncbi_submitter: School of Veterinary Medicine and Animal Science / University of Sao Paulo


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: United Kingdom

ncbi_isolation_source: root from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-RE-09

ncbi_submitter: Rothamsted Research


ncbi_country: USA: San Francisco

ncbi_isolation_source: blood

ncbi_submitter: Santa Clara University


ncbi_assembly_name: IMG-taxon 2708742400 annotated assembly

ncbi_organism_name: Janthinobacterium sp. TND4EL3

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Thermomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Daesang


ncbi_organism_name: Escherichia sp. 264_2022

ncbi_submitter: KAMDHENU UNIVERSITY


ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: ElgSus

ncbi_submitter: Jouf University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Clostridiales bacterium UBA5448

ncbi_submitter: University of Queensland


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_country: Lebanon

ncbi_strain_identifiers: VRE 21

ncbi_submitter: Lebanese American University


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Bethesda

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Tannerellaceae bacterium AM85-06pH10A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Universidade Estadual do Norte Fluminense


ncbi_organism_name: Blautia sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Holdemania filiformis

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Paenalcaligenes sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Beijing

ncbi_isolation_source: apiaries

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agricultural university


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Egypt: Sinai

ncbi_isolation_source: sandy soil

ncbi_organism_name: Micromonospora sp. Rc5

ncbi_submitter: Ainshams University


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Anaerostipes sp.

ncbi_submitter: addis ababa university


ncbi_country: China

ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: sichuan University


ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: marine metagenome


ncbi_country: Peru: Lima

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD15963

ncbi_submitter: Broad Institute


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_organism_name: Hyphomicrobium denitrificans

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Streptococcus xiaochunlingii

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: USA: inshore coral nursery; Key West; FL

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Halomonas sp. McH1-25

ncbi_submitter: Meyer Microbes Lab


ncbi_isolation_source: Dog

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Alistipes communis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_submitter: SC


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Streptococcus pneumoniae CDC1087-00

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Brook near wastewater plant Houston; Texas

ncbi_isolation_source: surface water

ncbi_organism_name: Exiguobacterium sp. KKBO11

ncbi_submitter: University of Houston

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. KKBO11


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Thermoanaerobaculum sp.

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: laboratoire des substances bioactives

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: VA

ncbi_isolation_source: creek water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: University of Colorado Anschutz Medical Campus


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Bronchial washing (contralateral lung; no tumour)

ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: University of the Sunshine Coast


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-370

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_strain_identifiers: new MAG-370

ncbi_submitter: Micoorganism


ncbi_organism_name: Candidatus Cardinium sp.

ncbi_submitter: Crop Reserch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Amoebophilaceae;g__Candidatus Cardinium;x__unclassified Candidatus Cardinium;s__Candidatus Cardinium sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Zymogenus saltonus

ncbi_submitter: Oklahoma State University

ncbi_taxonomy: d__Bacteria;p__;c__Deltaproteobacteria;o__Candidatus Zymogeniales;f__Candidatus Zymogenaceae;g__Candidatus Zymogenus;s__Candidatus Zymogenus saltonus

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Candidatus Zymogenia;o__Candidatus Zymogeniales;f__Candidatus Zymogenaceae;g__Candidatus Zymogenus;s__Candidatus Zymogenus saltonus


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprococcus catus


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Morganella morganii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parvibacter sp.


ncbi_organism_name: uncultured Paludibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_strain_identifiers: Os L e3

ncbi_submitter: CEITEC VETUNI


ncbi_country: Antarctica: Chile

ncbi_isolation_source: kidney

ncbi_organism_name: Paracoccus nototheniae

ncbi_submitter: Universidad Andres Bello


ncbi_country: Italy: Basilicata

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Pedobacter nyackensis

ncbi_submitter: Branch for Bioresources of the Fraunhofer IME


ncbi_country: Iran

ncbi_organism_name: Mycobacterium tuberculosis NRITLD47

ncbi_submitter: Broad Institute


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12114

ncbi_submitter: South China Agricultural University


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: perirectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NIH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Xanthomarina sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Myxococcota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_submitter: Uliege - Faculty of Veterinary Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Candidatus Scatocola faecipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rouxiella badensis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Lichenibacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Pacific Ocean

ncbi_isolation_source: basaltic crustal fluids

ncbi_submitter: University of Hawaii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium JdFR-51


ncbi_assembly_name: freshwater MAG --- A4_bin-495

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Butyricimonas paravirosa

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya

ncbi_isolation_source: blood

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: food production metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_isolation_source: activated sludge

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China

ncbi_organism_name: Escherichia coli


ncbi_country: France

ncbi_isolation_source: Minced meat

ncbi_submitter: Anses


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Belize: Carrie Bow Cay Field Station

ncbi_isolation_source: coral mucus

ncbi_organism_name: Cyanobacteria bacterium UBA2566

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA2566


ncbi_assembly_name: Rumen uncultured genome RUG14134

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Proteus columbae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Symbiobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: Australia

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Ausgem


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Canada: Ontario

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: San Francisco Bay

ncbi_organism_name: Denitromonas iodatirespirans

ncbi_submitter: University of California, Berkeley


ncbi_country: Japan: Tondabayashi

ncbi_isolation_source: laboratory experiment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Osaka Ohtani University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: other

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: China: Fujian

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Chongqing Medical and Pharmaceutical College


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Waterloo


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Methylomirabilia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;x__unclassified Candidatus Methylomirabilia;s__Candidatus Methylomirabilia bacterium


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: Spain: Riego de la Vega

ncbi_isolation_source: roots

ncbi_organism_name: Paenibacillus tritici

ncbi_submitter: Ghent University


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_country: Iran

ncbi_isolation_source: tuber

ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: CFBP 8697

ncbi_submitter: Shiraz University


ncbi_country: USA: NC

ncbi_isolation_source: Plant; Oats

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_submitter: University of Queensland


ncbi_country: Antarctica: King George Island; Antarctic Peninsula

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pseudomonas sp. LAP_36

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: NHGRI/NIH


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: Houston

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: MB4528 Variant

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_country: China: Shaanxi; Xi an

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_country: Peru: Lima

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: wound swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Ponticaulis sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolate: S13 bin 3

ncbi_organism_name: Nostoc sp.

ncbi_strain_identifiers: S13 bin 3

ncbi_submitter: Duke University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangzhou

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Nigeria: Igboukwu

ncbi_isolation_source: sold in market

ncbi_organism_name: Citrobacter sp. Igbk 14

ncbi_strain_identifiers: Igbk 14

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna


ncbi_organism_name: uncultured Paraprevotella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_organism_name: Chryseobacterium bernardetii


ncbi_submitter: Medical Mycology Research Center


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium BACL1 MAG-120823-bin87


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: Seto Island Sea

ncbi_organism_name: Sulfitobacter sp. M57

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2599185312 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC32-1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Serratia sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Australia: Melbourne

ncbi_organism_name: Wolbachia endosymbiont of Onchocerca gibsoni

ncbi_submitter: La Trobe University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Salmonella sp. SAL04172

ncbi_submitter: Zhejiang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Thessaly


ncbi_isolate: AOP41_A1_coeur _bin _4

ncbi_organism_name: Pseudolactococcus laudensis

ncbi_strain_identifiers: AOP41_A1_coeur _bin _4

ncbi_submitter: Genoscope


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Colorado Anschutz Medical Campus


ncbi_organism_name: uncultured Rhabdothermincola sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: VETUNI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Pseudomarimonas sp.

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Tel Aviv University


ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_isolation_source: cold seep

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Rhodococcus opacus

ncbi_submitter: PFRC UB RAS


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Northern Mariana Islands: Mariana Back-Arc; Illium Vent Field

ncbi_isolation_source: gill tissue

ncbi_organism_name: Alviniconcha hessleri gill endosymbiont

ncbi_submitter: University of Rhode Island

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Alviniconcha hessleri gill endosymbiont


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: freshwater MAG --- D3_bin-052

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Massey University


ncbi_country: Germany

ncbi_organism_name: Staphylococcus aureus 08-01084

ncbi_submitter: Broad Institute


ncbi_country: South Africa: Mahikeng

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: North West University


ncbi_organism_name: uncultured Prochlorococcus sp.


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: University of Nebraska Medical Center


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: Hebei Province; Zhangjiakou

ncbi_isolation_source: dried saline lake

ncbi_organism_name: Nocardioides sp. ChNu-99

ncbi_submitter: Hebei North University


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: equine clinic

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_assembly_name: Rumen uncultured genome RUG13530

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: uncultured Sporobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Liaoning; Shenyang

ncbi_isolation_source: animal waste

ncbi_organism_name: Gordonia polyisoprenivorans

ncbi_submitter: Jilin University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_country: Italy: Lodi

ncbi_isolation_source: urine catheter

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Charles University in Prague


ncbi_country: Netherlands

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: Central Veterinary Institute part of Wageningen UR


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Niabella sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Bacillus cereus group sp. Bce040

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bce040


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Sweden

ncbi_organism_name: Caviibacter abscessus

ncbi_submitter: Robert Koch Institute


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Breznakibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: IMG-taxon 2619619034 annotated assembly

ncbi_organism_name: Lentzea albida

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Sabulitectum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;g__Candidatus Sabulitectum;x__unclassified Candidatus Sabulitectum;s__Candidatus Sabulitectum sp.


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Thailand: Suphanburi

ncbi_isolation_source: Fermented fish

ncbi_organism_name: Idiomarina piscisalsi

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_country: China

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSUF


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Acidobacteriota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_isolation_source: Ocean

ncbi_organism_name: Prochlorococcus sp. MIT 0701

ncbi_submitter: MIT


ncbi_organism_name: Faecalibacillus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Nanjing

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: Janibacter hoylei

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Viet Nam

ncbi_organism_name: Streptomyces cavourensis

ncbi_submitter: Institute of Biology


ncbi_assembly_name: CECT 9862

ncbi_isolation_source: Spore of Globus iranicum var. tenuihypharum

ncbi_organism_name: Methylobacterium symbioticum

ncbi_submitter: UVEG


ncbi_country: Poland: Biebrza National Park buffer zone

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. BB56-3

ncbi_submitter: University of Bialystok

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. BB56-3


ncbi_country: Switzerland

ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Bern


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: USDA


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Persephonella sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_submitter: University of Florida


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Waterloo


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of Alaska Anchorage


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: plaque-purified isolate from stock culture

ncbi_organism_name: Chlamydia muridarum str. Nigg

ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia muridarum;x__Chlamydia muridarum str. Nigg


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chryseobacterium indologenes


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter faecalis

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences


ncbi_isolation_source: stool

ncbi_submitter: University of Bern


ncbi_isolation_source: endotracheal tube (ETT) or tracheostomy tube

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Antarctica: Northern VictorianLand (NVL); Eureka Spurs

ncbi_isolation_source: fine sandstone

ncbi_organism_name: Subtercola boreus

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_assembly_name: Rumen uncultured genome RUG10059

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: metagenome

ncbi_organism_name: Lachnoclostridium sp. An138


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Bacillus cereus group sp. BC9

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC9


ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Parachlamydiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Wilmar International Limited


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: FIOCRUZ


ncbi_organism_name: Pseudarthrobacter sp. NPDC092419

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Pseudomonas alloputida

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rochdale


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: bacterium


ncbi_country: USA: Minnesota

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Minnesota


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_submitter: Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus MSSA476


ncbi_country: China: Heyuan City; Guangdong Province

ncbi_submitter: South China Agricultural University


ncbi_country: Spain: Balearic Islands; Mallorca Island; Palma de Mallorca harbor

ncbi_isolation_source: harbor surface coastal-water

ncbi_organism_name: Thalassobacter sp. 16PALIMAR09

ncbi_submitter: Univesitat de les Illes Balears (UIB)


ncbi_country: South Africa: Western Cape

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp. SARCC-RB16n

ncbi_submitter: Agricultural Research Council


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-1-3A

ncbi_submitter: Curtin University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium minutissimum

ncbi_submitter: US Food and Drug Administration


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: SCOPE


ncbi_country: Canada: Rouyn-Noranda

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Pennsylvania State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_submitter: The University of Queensland


ncbi_country: USA: St. Louis; MO

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_isolation_source: Caecum


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom: London

ncbi_isolation_source: Plaque (caries +)

ncbi_organism_name: Actinomyces oris

ncbi_submitter: King's College London


ncbi_organism_name: Enterococcus faecium 1,231,501

ncbi_submitter: Broad Institute


ncbi_organism_name: Fructobacillus evanidus

ncbi_submitter: ghent university


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: Rumen uncultured genome RUG164

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides intestinalis CAG:315

ncbi_submitter: DTU


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Greece: Athens

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG12010

ncbi_isolation_source: cattle rumen


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella quasipneumoniae subsp. similipneumoniae

ncbi_submitter: University of Washington


ncbi_organism_name: Alcaligenes nematophilus

ncbi_strain_identifiers: BZR 278

ncbi_submitter: Institute Cytology and Genetics SB RAS


ncbi_organism_name: Prevotella sp.


ncbi_country: USA: Georgia;Atlanta

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: BGI-Shenzhen


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Argentina: Victoria

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Thailand

ncbi_isolation_source: human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium tibiigranuli

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Shewanella vesiculosa


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: CSF

ncbi_organism_name: Klebsiella aerogenes UCI 46

ncbi_strain_identifiers: UCI 46

ncbi_submitter: Broad Institute


ncbi_country: China: Henan

ncbi_isolation_source: bark

ncbi_organism_name: Sphingobacterium corticibacterium

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_country: New Zealand: North Canterbury; near Woodend

ncbi_submitter: University of Canterbury


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Aarhus University


ncbi_isolation_source: marine metagenome


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Aminobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Tulsa

ncbi_isolation_source: ground turkey

ncbi_submitter: University of Tulsa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Oklahoma


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Porphyromonas gingivalis


ncbi_organism_name: Eubacteriaceae bacterium ES2

ncbi_submitter: korea institute of ocean science and technology (KIOST)


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Cultivarium


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Svalbard: Smeerenburgfjorden

ncbi_isolation_source: sediment core

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Vienna


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Pararhodobacter aggregans

ncbi_submitter: Ocean University of China


ncbi_organism_name: Acinetobacter beijerinckii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Parageobacillus genomosp. 1

ncbi_submitter: University of Gdansk


ncbi_organism_name: Lactococcus nasutitermitis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Galway


ncbi_organism_name: Nitrospinales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_organism_name: Firmicutes bacterium UBA2116

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA2116


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Monash University


ncbi_country: USA: California; Middletown

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Treponema sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Dialister invisus

ncbi_submitter: Washington University School of Medicine


ncbi_country: Australia: Adelaide

ncbi_isolation_source: wastewater

ncbi_submitter: University of South Australia


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: China: Beijing

ncbi_isolation_source: ceacal content

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Chinese Academy of Science


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG623

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pectobacterium odoriferum

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_organism_name: Aeromonas sp. R5-4

ncbi_submitter: Hangzhou CDC


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- Umea_bin-04066

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Atlantic Ocean: North Atlantic

ncbi_isolation_source: Seaweed

ncbi_organism_name: Pseudoalteromonas sp. S327

ncbi_submitter: Technical University of Denmark


ncbi_country: Japan: Tokyo Bay

ncbi_isolation_source: rope in sea water

ncbi_organism_name: Thalassospira povalilytica

ncbi_strain_identifiers: Zumi 95

ncbi_submitter: Third Institute of Oceanography,State Oceanic Administration


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: Pacific Ocean: Eastern North Pacific; ODP site 1244

ncbi_isolation_source: methane hydrate marine sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Kalmar county hospital


ncbi_organism_name: Bacillus safensis

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi


ncbi_organism_name: Actinomyces sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD2_bin-0111

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Microbacterium sp.


ncbi_organism_name: Micromonospora purpureochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Agroscope


ncbi_country: China: Qinghai Province

ncbi_organism_name: Gordonia jinghuaiqii

ncbi_submitter: China CDC


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Halioglobus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Korea

ncbi_isolation_source: Kimchi without red pepper powder

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_submitter: University of Galway


ncbi_organism_name: Planctomycetaceae bacterium


ncbi_country: China: Shandong Province

ncbi_isolation_source: coastal seawaters

ncbi_organism_name: Vibrio sp. NC2

ncbi_submitter: Shandong University


ncbi_organism_name: Escherichia coli KTE124

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC