ncbi_country: Thailand

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Ministry of Public Health-Thailand


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Florida; Cedar Key

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: gill

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex. Lucinisca nassula)


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_country: United Kingdom: Gwynedd

ncbi_isolation_source: Mine drainage originating from the mine Catherine and Jane Consols in North Wales

ncbi_organism_name: Acidithiobacillus sulfuriphilus

ncbi_refseq_category: reference genome

ncbi_submitter: Fundacion Ciencia y Vida

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Scaffold

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient sediment

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Lebanon: North

ncbi_isolation_source: Cavum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Avoscillospira;s__Candidatus Avoscillospira stercorigallinarum


ncbi_country: China: Shandong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Aricultural University


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Albania

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Danish Technical University


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Shewanella algicola

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Streptomyces parvus


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus IS-3


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Fimousia stercorigallinarum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Fimousia;s__Candidatus Fimousia stercorigallinarum


ncbi_country: China: the South China Sea

ncbi_isolation_source: ocean sediment

ncbi_organism_name: Pseudoalteromonas sp. MT33b

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 3961

ncbi_submitter: University of Exeter


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alistipes communis


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Health Research Institutes


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Brevundimonas poindexterae

ncbi_submitter: Xiamen University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG12109

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: France: Caen

ncbi_isolation_source: clinical

ncbi_organism_name: Enterococcus hirae


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Streptococcus ferus

ncbi_submitter: Yunnan Agricultural University


ncbi_strain_identifiers: GBK 19 MK

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Laredo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Leon University


ncbi_organism_name: Staphylococcus muscae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB243_495G23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: soil

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU1 evolved under selective conditions; LB evolved gen 500 Population GS

ncbi_strain_identifiers: RU1 LB4

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_isolation_source: metagenome

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: addis ababa university


ncbi_country: China: Gansu

ncbi_isolation_source: swine excrement

ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_country: South Korea: Gyeongsangbuk-Do; Sanju

ncbi_organism_name: Streptomyces sp. SJ1-7

ncbi_submitter: Sunchon National University


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alicycliphilus sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Nocardioides sp. NPDC051685

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GenomeTrakr Project: Ohio Department of Agriculture | Animal Disease Diagnostic Laboratory


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Candidatus Avimonas narfae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Avimonas;s__Candidatus Avimonas narfae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avimonas;s__Candidatus Avimonas narfae


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptomyces atroolivaceus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudohongiellaceae bacterium


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Bacilli bacterium


ncbi_organism_name: Chloroflexota bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia producta

ncbi_submitter: University of Chicago


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces griseoluteus


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Canada: Alberta

ncbi_isolation_source: Human-Sporadic

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110358


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NBC_00289

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_country: Switzerland

ncbi_organism_name: Treponema phagedenis

ncbi_submitter: University of Bern


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Iowa State University


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Dyella sp.

ncbi_submitter: Zhejiang University


ncbi_country: Cambodia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: UANTW


ncbi_assembly_name: Whole genome assembly

ncbi_country: India

ncbi_organism_name: Amycolatopsis vancoresmycina DSM 44592

ncbi_submitter: Institute of Microbial Technology (IMTECH), Chandigarh, India 160036


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Akkermansia sp.


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_country: China: Anhui

ncbi_isolation_source: pig manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China

ncbi_isolation_source: mud

ncbi_organism_name: Paenibacillus lacisoli

ncbi_submitter: Jiangxi Normal University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Gottfriedia acidiceleris

ncbi_submitter: Auburn University


ncbi_country: Brazil: Salvador

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_assembly_name: freshwater MAG --- AM-2014-D4_bin-212

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Queensland


ncbi_isolation_source: pinewood nematode

ncbi_organism_name: Neorhizobium sp. UBA5916


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: IMG-taxon 2619618824 annotated assembly

ncbi_organism_name: Trichococcus ilyis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: Ileibacterium valens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Prochlorococcus sp. UBA1269


ncbi_country: USA: Alaska; Kasilof River

ncbi_organism_name: Escherichia coli

ncbi_submitter: USGS


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Potato salad

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Agroscope


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Ocean University of China


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: not provided

ncbi_organism_name: Capnocytophaga gingivalis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_strain_identifiers: CSU FSL E1-134

ncbi_submitter: Cornell University


ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: China: Yantai

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_isolation_source: trachael aspirate

ncbi_organism_name: Neisseria sp. HMSC066F04

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Thailand: Phitsanulok

ncbi_submitter: Cardiff University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Flavobacterium columnare ATCC 49512

ncbi_submitter: Mississippi State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;s__Flavobacterium columnare;x__Flavobacterium columnare ATCC 49512


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: metagenome

ncbi_organism_name: Millionella massiliensis

ncbi_submitter: addis ababa university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pantoea septica


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Cuba: Santa Cruz del Norte

ncbi_isolation_source: Cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_isolation_source: Spine

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_organism_name: Treponema sp.


ncbi_country: Ireland

ncbi_isolation_source: Cattle/Water

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_organism_name: Enterococcus innesii

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: microbes were collected at JL-Dive100-S03

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Austria: Kremesberg 11

ncbi_isolation_source: rumen epithelial tissue

ncbi_organism_name: Campylobacter sp. CS_ED1

ncbi_strain_identifiers: Cs ED1

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_isolation_source: stool

ncbi_organism_name: Prevotella rectalis

ncbi_submitter: URMITE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Ligilactobacillus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium UBA6253


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Helgoland Roads

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Winogradskyella costae

ncbi_submitter: Mediterranean Institute For Advanced Studies


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Denmark: Aarhus

ncbi_organism_name: Cutibacterium acnes


ncbi_organism_name: uncultured Porticoccus sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1114

ncbi_submitter: Broad Institute


ncbi_organism_name: Spiroplasma eriocheiris CCTCC M 207170

ncbi_strain_identifiers: CCTCC M 207170

ncbi_submitter: Chinese National Human Genome Center at Shanghai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;s__Spiroplasma eriocheiris;x__Spiroplasma eriocheiris CCTCC M 207170


ncbi_country: Czech Republic

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Key laboratory of dairy biotechnology and engineering


ncbi_country: China: Gansu

ncbi_isolation_source: Rice flour product

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_organism_name: Enterobacter cloacae complex sp. CDL006

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. CDL006


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Odense University Hospital


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Bacillaceae bacterium

ncbi_submitter: University of Western Australia


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Plantactinospora sp. GCM10030261

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Shanghai Municipal Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rissen


ncbi_organism_name: Paraburkholderia fungorum

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Desulfovibrio fairfieldensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Erysipelothrix sp.


ncbi_organism_name: Bacteroides uniformis


ncbi_submitter: University of Sevilla, Spain

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Longimicrobiia;o__Longimicrobiales;x__unclassified Longimicrobiales;s__Candidatus Longimicrobiales bacterium M2_2A_002


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Streptomyces longwoodensis


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Xiamen University


ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: Photorhabdus noenieputensis

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pakistan: Sindh

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: sludge collected from the acid-phase digester of a two-phase anaerobic digestion process at the Madison Metropolitan Sewerage Disctrict Nine Springs Facility

ncbi_organism_name: Sphingobium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus amylolyticus

ncbi_submitter: Cornell University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1161

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_isolation_source: sewage

ncbi_submitter: Food Science and Technology Institute, Morinaga Milk Industry Co., Ltd

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis;sb__Bifidobacterium animalis subsp. lactis;x__Bifidobacterium animalis subsp. lactis ATCC 27673


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Oklahoma

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: Instituto Nacional de Rehabilitacion


ncbi_country: China: Hangzhou

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Streptococcus pyogenes ABC020017774


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12515

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: India: Aurangabad

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Candidatus Phocaeicola gallistercoris

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_submitter: The Genome Institute at Washington University


ncbi_assembly_name: P aeruginosa VRFPA07

ncbi_country: India: Chennai

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Pseudomonas aeruginosa VRFPA07

ncbi_submitter: SANKARA NETHRALAYA, VISION RESEARCH FOUNDATION


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Brazil:Sao Paulo; Botucatu

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Instituto Adolfo Lutz


gtdb_type_species_of_genus: t

ncbi_organism_name: Acidocella facilis ATCC 35904

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W73060

ncbi_submitter: Broad Institute


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Geobacter sp. UBA5735

ncbi_submitter: University of Queensland


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides uniformis


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China

ncbi_isolation_source: pickle

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: XJSC

ncbi_submitter: China Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: South Korea

ncbi_organism_name: Escherichia coli

ncbi_submitter: Seoul National University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: EMG


ncbi_isolation_source: Sputum


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Roseibium sp. FZY0029

ncbi_submitter: Hohai University


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_isolation_source: Submandibular lymph node abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_submitter: Instituto Nacional de Salud Publica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Hainan province

ncbi_isolation_source: The waterway of tropical mangrove

ncbi_organism_name: Marivivens niveibacter

ncbi_submitter: The Third Institute of State Oceanic Administration


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus UCIM6106

ncbi_submitter: Broad Institute


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli M5

ncbi_submitter: Department of Pediatrics, Washington University School of Medicine


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Java


ncbi_assembly_level: Chromosome

ncbi_country: Denmark

ncbi_isolation_source: in vitro phage -resistant clone

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Campus of Guangdong Pharmaceutical University; Guangzhou

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Gordonia sp. WA4-43

ncbi_submitter: Guangdong Pharmaceutical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. WA4-43


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Akkermansia sp.


ncbi_submitter: national health research institutes


ncbi_organism_name: Novosphingobium aerophilum

ncbi_submitter: EEZ-CSIC


ncbi_organism_name: Minisyncoccia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_organism_name: Alistipes inops


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Kitasatospora sp. NPDC005748

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: the hong kong university of science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain

ncbi_submitter: Universite Laval


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Psychrobacter sp.


ncbi_country: Malaysia: Selangor

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for medical research


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: bacterium HR12

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_country: USA: IA

ncbi_isolation_source: excrement

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Streptomyces doudnae

ncbi_submitter: Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus


ncbi_country: China: Harbin

ncbi_isolation_source: baby feces

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Harbin Meihua Biotechnology Co., LTD


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1045

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Egypt

ncbi_isolation_source: Clinical

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Canada

ncbi_isolation_source: flour

ncbi_submitter: Health Canada


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus thailandicus

ncbi_submitter: BGI-Shenzhen


ncbi_country: Thailand:Sakacrat Biosphere Reserve

ncbi_isolation_source: Forest soil

ncbi_organism_name: Microbispora siamensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Changsha

ncbi_isolation_source: liver abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing genomics institute


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: sediment

ncbi_organism_name: Mameliella alba

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Streptococcus sp. UBA632


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Canada: Ottawa

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Ottawa


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_01_FULL_45_24


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_isolation_source: water

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_country: Svalbard

ncbi_isolation_source: sea water

ncbi_organism_name: Salinibacterium sp. NSLL16

ncbi_submitter: Shandong University


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Washington


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Ligilactobacillus salivarius


ncbi_organism_name: Microcoleus sp. B7-D4

ncbi_submitter: Palacky University Olomouc


ncbi_isolate: pig swab

ncbi_isolation_source: Farm

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: pig swab

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany

ncbi_isolation_source: Feces; FP

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Helsinki


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: Sil NS 21

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Gambia: Basse Santa Su

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: NCIMB 8183

ncbi_submitter: Agroscope


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: University of Bern


ncbi_country: Canada: Lunenberg County; NS

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_submitter: Children's Hospital of Fudan University


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus IS-91


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Dental plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Brazil: Santos

ncbi_isolation_source: animal

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: USP


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lactobacillus amylovorus subsp. amylovorus

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Penn State


ncbi_organism_name: Enterococcus sp. AZ134

ncbi_submitter: Broad Institute


ncbi_organism_name: Phocaeicola sp.


ncbi_organism_name: uncultured Peptoniphilaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Ethiopia: Oromiya; East Wellega; Sibu sire

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CH 01

ncbi_submitter: Kyoto University Graduate School of Medicine


ncbi_organism_name: Culturomica massiliensis


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. S09F 262

ncbi_submitter: Bowling Green State University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Antarctica: James Ross Island

ncbi_isolation_source: water from temporary lake

ncbi_organism_name: Pedobacter fastidiosus

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_submitter: SC


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: China: Zhejiang

ncbi_isolation_source: blood

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Morganella morganii

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Coleofasciculus sp. FACHB-501

ncbi_submitter: South China Normal University


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_submitter: University of Bologna


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Australia: Orielton Lagoon

ncbi_isolation_source: freshwater

ncbi_organism_name: Nodularia spumigena CS-591/04

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Scatomorpha stercoravium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha stercoravium


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: chicken

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Goldcoast


ncbi_country: South Korea: Chungnam

ncbi_isolation_source: feces

ncbi_organism_name: Aerococcus kribbianus

ncbi_submitter: ABS Research Support Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: bioreactor

ncbi_organism_name: Rhizobiales bacterium UBA1349

ncbi_submitter: University of Queensland


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: Pineapple

ncbi_organism_name: Dickeya zeae

ncbi_submitter: University of Hawaii at Manoa


ncbi_country: Russia

ncbi_isolation_source: throat swab

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: uncultured Clostridium sp.


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0280

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Plate/lab

ncbi_organism_name: Myxococcus xanthus

ncbi_submitter: University of Murcia


ncbi_country: Serbia

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Staphylococcus ureilyticus

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: Denmark: Odense

ncbi_isolation_source: Perineal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Odense University Hospital


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: solid retention time of 6 days

ncbi_organism_name: Limosilactobacillus oris

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Polydrusus pterygomalis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: United Kingdom:Hertfordshire

ncbi_isolation_source: heart valve

ncbi_submitter: SC


ncbi_submitter: Instituto de Quimica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Spain

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_country: China: Beijing

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium HUM_3


ncbi_assembly_name: IMG-taxon 2599185179 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFR09

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: India: Pune

ncbi_isolation_source: Pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_isolation_source: soil

ncbi_organism_name: Escherichia sp. 93.0750

ncbi_submitter: FDA


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_assembly_name: freshwater MAG --- MJ120813B_bin-076

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Szeged

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_submitter: University of California, San Francisco

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus USA300;x__Staphylococcus aureus subsp. aureus USA300_FPR3757


ncbi_organism_name: Nocardia sp. NPDC050435

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-1006

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: South Africa: Northern Cape Province

ncbi_isolation_source: Ear tissue

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Pretoria


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: SOUTHWEST MEDICAL UNIVERSITY


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Salinisphaerales bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: AAFC


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Phycisphaeraceae bacterium


ncbi_assembly_name: IMG-taxon 2585428044 annotated assembly

ncbi_organism_name: Lactonifactor longoviformis DSM 17459

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Campylobacter coli

ncbi_submitter: AGROSAVIA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_organism_name: Candidatus Sericytochromatia bacterium

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__unclassified Candidatus Sericytochromatia;s__Candidatus Sericytochromatia bacterium


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Morocco

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre, APHP Paris-Saclay


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7095


ncbi_organism_name: Micromonospora sp. NPDC048839

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: Rumen uncultured genome RUG11564

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Candidatus Atribacteria bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Auburn University


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: NSW Department of Primary Industries


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL005PA3

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanghai

ncbi_submitter: Department of Laboratory Medicine


ncbi_country: USA: FL

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Italy

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Australia

ncbi_submitter: University of Technology Sydney


ncbi_country: USA: Michigan

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Case Western Reserve University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Algoriphagus zhangzhouensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;o__Candidatus Absconditabacterales;x__unclassified Candidatus Absconditabacterales;s__Candidatus Absconditabacterales bacterium


ncbi_country: China: Tai an; Shandong Province

ncbi_organism_name: Chryseobacterium nepalense

ncbi_submitter: Shandong Agricultural University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Ancistrocerus nigricornis


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: The University of Hong Kong


ncbi_country: United Kingdom

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Public Health England


ncbi_organism_name: Turicimonas muris

ncbi_submitter: EMG


ncbi_country: Netherlands


ncbi_country: USA:New York; CentralHarlem

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus


ncbi_country: India: Karnataka; Uttara Kannada

ncbi_organism_name: Ciceribacter sp. RN22

ncbi_submitter: National Institute for Interdisciplinary Science and Technology (CSIR)


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H53188

ncbi_submitter: Broad Institute


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Hungary

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: Saudi Arabia: Red Sea; Suakin Deep

ncbi_isolation_source: marine brine pool

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: KAUST


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alistipes communis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp. Uisw_050_01


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: 2nd Faculty of Medicine and Motol University Hospital


ncbi_submitter: University of Thessaly


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Pluralibacter gergoviae

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pseudoalteromonas sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Lwoffella lincolnii

ncbi_submitter: Griffith UNiversity


ncbi_assembly_name: freshwater MAG --- LJ-3-65m_bin-1192

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Lentisphaerota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__environmental samples;s__uncultured Lentisphaerota bacterium


ncbi_organism_name: uncultured Phenylobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Lund University


ncbi_country: USA: California; Eel River; Cedar Creek

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Mycolicibacterium sp.

ncbi_submitter: University of South Africa


ncbi_assembly_name: freshwater MAG --- LJ_bin-3772

ncbi_organism_name: uncultured beta proteobacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis EnGen0198

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-222-05_S4_C2

ncbi_submitter: IGS


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Memphis; TN

ncbi_isolation_source: stool sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 4 / D; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division CPR2;s__candidate division CPR2 bacterium GWD2_39_7


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Thiohalocapsa sp.

ncbi_submitter: EMG


ncbi_country: Belgium

ncbi_submitter: Sciensano


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Norway

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: ANIWHA


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Brevundimonas mediterranea

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterococcus faecium EnGen0375

ncbi_submitter: Broad Institute


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Stirling


ncbi_isolation_source: sputum (induced)

ncbi_organism_name: Streptococcus sp. HMSC065H07

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong CDC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Centers for Disease Control, Taiwan


ncbi_submitter: Health Canada


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Candidatus Caldatribacterium sp.

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;c__Atribacteria;o__Atribacterales;f__Candidatus Caldatribacteriaceae;g__Candidatus Caldatribacterium;x__unclassified Candidatus Caldatribacterium;s__Candidatus Caldatribacterium sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Stenotrophomonas bentonitica

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_country: Russia

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptococcus parasanguinis


ncbi_organism_name: Streptomyces sp. NPDC087428

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Shenzhen

ncbi_organism_name: Clostridium sp. AF27-2AA

ncbi_submitter: BGI


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_isolation_source: groundwater

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG11537

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China: Guangxi

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCBAU 53421

ncbi_strain_identifiers: CCBAU 53421

ncbi_submitter: China Agricultural University


ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: Zhejiang University


ncbi_country: Svalbard: Jan Mayen

ncbi_isolation_source: Arctic soil

ncbi_organism_name: Dyadobacter psychrotolerans

ncbi_submitter: Kyonggi University


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Cellvibrionales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Chittagong


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: India

ncbi_isolation_source: Nasal discharge

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: ICAR National Institute of Veterinary Epidemiology and Disease Informatics (NIVEDI)


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia multivorans


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Massachusetts;Boston;The Forsyth Institute

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Nanosynbacter sp. TM7-087

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;x__unclassified Candidatus Nanosynbacter;s__Candidatus Nanosynbacter sp. TM7-087


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Inserm


ncbi_country: Germany

ncbi_isolation_source: soil adhering to oilseed rape s roots

ncbi_organism_name: Serratia plymuthica

ncbi_submitter: EEZ-CSIC


ncbi_country: China

ncbi_isolation_source: mountain soil

ncbi_organism_name: Chitinophaga barathri

ncbi_submitter: Huzhong Agricultrural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paracoccus aestuariivivens

ncbi_submitter: Chinese center for disease control and prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Klebsiella sp. 138958

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Alistipes ihumii


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Mogibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella sp. KE9456

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Enterococcus termitis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces sp. NPDC088935

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas sp. B26140

ncbi_submitter: UMR 1300 BIOEPAR


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acidaminococcus intestini


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Phaeobacter sp. BS34

ncbi_submitter: Centre for Marine Science and Innovation, University of New South Wales Sydney


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Thailand: Nakhon Ratchasima

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Faculty of Public Health


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: freshwater MAG --- MJ110830A_bin-138

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Fecal samples

ncbi_submitter: INSERM UMR 1137


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus SJUD6087

ncbi_submitter: Broad Institute


ncbi_submitter: EBI


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_organism_name: Micromonospora sp. NPDC050784


ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Guangzhou

ncbi_isolation_source: phage-resistant mutant

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: South China Sea institute of Oceanology, Chinese academy of sciences


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer N sample 29 PSU in greater than .8 micron size fraction

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: Oral

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: The University of Texas at Dallas


ncbi_country: USA: Iowa; Ames

ncbi_isolation_source: rumen

ncbi_organism_name: Denitrobacterium detoxificans

ncbi_submitter: ARS USDA


ncbi_organism_name: Albidovulum sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: J. Craig Venter Institute


ncbi_assembly_name: Rumen uncultured genome RUG12573

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Spain

ncbi_isolation_source: Medical

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Investigacion Sanitaria y Biomedica de Alicante


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: University of Chicago


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_organism_name: Bordetella holmesii ATCC 51541

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: San Diego State University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: France

ncbi_isolation_source: grape must

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: CIRM-BIA 2200

ncbi_submitter: Brigham Young University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: OH

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0920S

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: National Health Research Institutes


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bartonella sp. cb54

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Laboratory of Applied Microbiology, Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture


ncbi_country: China: Xihua County Agricultural Science Institute; Henan Province

ncbi_isolation_source: wheat field

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Henan Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Hyphomonadaceae bacterium UBA1595

ncbi_submitter: University of Queensland


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Singapore

ncbi_isolation_source: Coastal Water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National University of Singapore


ncbi_organism_name: Ponticoccus sp. SC6-18

ncbi_submitter: Shantou University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: The James Hutton Institute


ncbi_isolation_source: air

ncbi_organism_name: Rhodocytophaga aerolata

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Helicobacter bilis

ncbi_submitter: EMG


ncbi_country: USA: Santa Barbara Zoo

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: Escherichia coli

ncbi_submitter: Benemerita Universidad Autonoma de Puebla


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Cornell University