ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Seawater (1m depth)

ncbi_organism_name: Planktomarina temperata

ncbi_submitter: University Duisburg-Essen


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Enterococcus sp.

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_assembly_level: Scaffold

ncbi_isolation_source: raw milk for cow(Bos taurus)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Meiji Co., Ltd


gtdb_representative: t

ncbi_country: USA: Ann Arbor; Michigan

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Candidatus Peribacteraceae bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;x__unclassified Candidatus Peribacteraceae;s__Candidatus Peribacteraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_level: Complete Genome

ncbi_country: China: Caidian District; Wuhan; Hubei

ncbi_isolation_source: Soil

ncbi_organism_name: Sphingobium yanoikuyae

ncbi_strain_identifiers: SHJ

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Honduras: Copan

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus infantis SK970

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Vibrio sp. 1F148

ncbi_submitter: University of Vienna


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: McGill University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Firmicutes bacterium UBA3553

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA3553


ncbi_isolate: AOP5_CZ1_surf _bin _22

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP5_CZ1_surf _bin _22

ncbi_submitter: Genoscope


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Elusimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Cefas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Kenya: Kakamega

ncbi_isolation_source: P5 gut compartment

ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Rhodothalassiaceae bacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_country: Switzerland

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_isolate: Clinical

ncbi_isolation_source: Sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Clinical

ncbi_submitter: newcastle university


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Ghent University


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Technical University of Munich


ncbi_country: Norway

ncbi_isolation_source: salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: LSWY

ncbi_submitter: Shanghai Customs


ncbi_country: South Africa

ncbi_isolation_source: Rustenburg

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Pretoria


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Hubei

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Thailand: Pathumthani

ncbi_isolation_source: fermented vegetable Brassica juncea (Pak-kad-dhong)

ncbi_organism_name: Lactococcus sp. SK2-659

ncbi_submitter: Chulalongkorn University


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_country: USA: MN

ncbi_isolation_source: insect

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 9,12:l,z28:-


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: IHU Mediteranee Infection


ncbi_country: China: Chifeng; Inner Mongolia

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Technical University of Denmark


ncbi_strain_identifiers: LT2 KO_STM1796

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Spain: Universitario Ramn y Cajal Hospital

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: INRAE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_02_FULL_37_19


ncbi_country: South Korea:Geje

ncbi_isolation_source: seawater

ncbi_organism_name: Agarivorans aestuarii

ncbi_refseq_category: reference genome

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University

ncbi_type_material_designation: assembly from type material


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: University of Waterloo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lacticaseibacillus paracasei NRIC 1917

ncbi_strain_identifiers: NRIC 1917

ncbi_submitter: Tokyo University of Agriculture


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolate: Burkholderia cenocepacia F01

ncbi_isolation_source: soil

ncbi_strain_identifiers: Burkholderia cenocepacia F01

ncbi_submitter: LMSM EA4312, UNIVERSITY OF ROUEN


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Oerskovia enterophila

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Companilactobacillus;s__Companilactobacillus paralimentarius;x__Companilactobacillus paralimentarius DSM 13238 = JCM 10415


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA1676

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA1676


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Salmonella enterica subsp. diarizonae

ncbi_submitter: National Center for Biotechnology Information


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Streptomyces sp. NPDC052682

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Hebei Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Moraxellaceae bacterium


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Russia: Moscow

ncbi_isolation_source: ventilator

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


gtdb_type_species_of_genus: t

ncbi_country: India

ncbi_isolation_source: dry soil

ncbi_organism_name: Falsirhodobacter halotolerans

ncbi_submitter: National Marine Biodiversity Institute of Korea


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Chicken meat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Pakistan

ncbi_isolation_source: gut

ncbi_organism_name: Apilactobacillus waqarii

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE)


ncbi_country: USA

ncbi_isolation_source: Wound Right Shoulder NON OPERATIVE

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Anaeroplasma sp.

ncbi_submitter: EMG


ncbi_isolate: SPRUCE 152

ncbi_organism_name: Desulfobaccales bacterium

ncbi_strain_identifiers: SPRUCE 152

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Lachnoclostridium phocaeense

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Intestinimonas aquisgranensis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. Bc009

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bc009


ncbi_country: South Korea

ncbi_isolation_source: Freshwater sediment

ncbi_organism_name: Rhodoferax sediminis

ncbi_submitter: Nanjing Forestry University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus cereus VD156

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus VD156


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: MS

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR3590


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyushu University Graduate school of medical sciences, department of Bacteriology


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: sea water

ncbi_organism_name: SAR86 cluster bacterium SAR86B

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium SAR86B


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B240;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: lake water

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Universidad Andres Bello


ncbi_country: China: HaiKou

ncbi_organism_name: Rhodococcus sp. HNM0569

ncbi_submitter: Hainan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. HNM0569


ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ancylobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: University of California, Santa Barbara

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: CAU


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 1110601704

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: NIH/NHGRI


ncbi_country: China: Beijing

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Fidelibacterota bacterium TCS55

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium TCS55


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Streptomyces sp. MK7

ncbi_submitter: Mahasarakham University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Iowa City; IA

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_isolation_source: mint

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: zhejiang university


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas sp. MYb118

ncbi_submitter: University of Toronto


ncbi_organism_name: Eisenbergiella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Chishui River; Guizhou Province

ncbi_isolation_source: freshwater

ncbi_organism_name: Brevibacillus dissolubilis

ncbi_submitter: Beijing University of Chemical Technology


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Candidatus Nanoperiomorbaceae bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanoperiomorbia;o__Candidatus Nanoperiomorbales;f__Candidatus Nanoperiomorbaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanoperiomorbia;o__Candidatus Nanoperiomorbales;f__Candidatus Nanoperiomorbaceae;x__unclassified Candidatus Nanoperiomorbaceae;s__Candidatus Nanoperiomorbaceae bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: worker

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Oceanobacillus halotolerans

ncbi_submitter: Yunnan institute of microbiology


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: JAMSTEC


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium OSCR and associated heterotrophs

ncbi_organism_name: Rhodobacteraceae bacterium HLUCCO18

ncbi_submitter: Pacific Northwest National Laboratroy


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_country: China: Tibet

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Life Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: Nostoc sp. ChiQUE01a

ncbi_submitter: LANGEBIO


ncbi_isolation_source: thermal sulfidic spring

ncbi_organism_name: Candidatus Thiocaldithrix dubininis

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Hydromicrobium sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Candidatus Humimicrobiia;o__Candidatus Humimicrobiales;f__Candidatus Hydromicrobiaceae;g__Candidatus Hydromicrobium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Humimicrobiia;o__Candidatus Humimicrobiales;f__Candidatus Hydromicrobiaceae;g__Candidatus Hydromicrobium;x__unclassified Candidatus Hydromicrobium;s__Candidatus Hydromicrobium sp.


ncbi_country: China: Xinjiang; Hami; Dongxiang Mountain

ncbi_isolation_source: Copper Mine

ncbi_organism_name: Acidithiobacillus thiooxidans

ncbi_strain_identifiers: DXS-W

ncbi_submitter: Central South University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0522

ncbi_submitter: Broad Institute


ncbi_country: Canada

ncbi_isolation_source: manure

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Northeast Forestry University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: Ottawa Research and Development Center


ncbi_isolation_source: Urine

ncbi_organism_name: Pauljensenia sp. UMB8040A

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: intestine

ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_isolation_source: feces

ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: CAU


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Miltoncostaeaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: sepsis

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_organism_name: Schlesneria sp.

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Blautia obeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Mycolicibacterium neoaurum

ncbi_strain_identifiers: NRRL B-3805

ncbi_submitter: MySterI


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_strain_identifiers: NCTC 7102

ncbi_submitter: Campden BRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Daytona


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium RIFCSPHIGHO2_02_FULL_40_12


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_submitter: EMG


ncbi_country: Hong Kong

ncbi_submitter: University of Zurich


ncbi_country: China: Shanghai

ncbi_isolation_source: sewage sludge biodrying material

ncbi_organism_name: Caldibacillus thermoamylovorans

ncbi_strain_identifiers: SSBM

ncbi_submitter: Ningbo University


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: rectal

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of KwaZulu Natal


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_submitter: Swiss Tropical and Public Health Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium sp. NZLR8

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculum intestinale


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: Institiute for Basic Science


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Streptomyces sp. ISL-90

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Russia

ncbi_organism_name: Escherichia coli


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Marivita cryptomonadis

ncbi_submitter: Shantou University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_organism_name: Rhizobium sp. 10PS4

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechococcus sp. RedBA-s

ncbi_strain_identifiers: RedBA-s

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Greece

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China-Japan Friendship Hospital


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of South Africa


ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute of Public Health NIH - National Research Institute


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Yunnan Wildlife Park

ncbi_organism_name: Advenella mandrilli

ncbi_submitter: YUNNAN UNIVERSITY


ncbi_isolate: Alphaproteobacteria sp. RBC064

ncbi_isolation_source: wastewater biofilm

ncbi_strain_identifiers: Alphaproteobacteria sp. RBC064

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: China: Jiangxi

ncbi_organism_name: Acinetobacter sp. YH16040_T

ncbi_submitter: South China Agricultural University


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: JiLin Agricultural Science and Technology university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with avicel

ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: Gar NS 15

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: India: Siliguri

ncbi_isolation_source: gut

ncbi_organism_name: Comamonas aquatica

ncbi_submitter: NORTH BENGAL UNIVERSITY


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Ireland: Cork

ncbi_isolation_source: mackerel intestinal sample

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: APC Microbiome Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Italy

ncbi_isolation_source: minced meat

ncbi_submitter: FDA


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_isolation_source: mucus

ncbi_organism_name: Histophilus somni

ncbi_submitter: USDA-ARS-USMARC


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bifidobacterium castoris

ncbi_submitter: University of Parma


ncbi_organism_name: Coriobacteriaceae bacterium AM22-12AC-r

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Tang lab


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: EMG


ncbi_country: China: Gansu

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Microbacterium sp. NC79

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_submitter: Wuhan Polytechnic University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Clostridiales bacterium UBA3722

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Oxalobacteraceae;g__Candidatus Zinderia;x__unclassified Candidatus Zinderia;s__Candidatus Zinderia endosymbiont of Aphrophora alni


ncbi_country: China: the Lake Chaohu; Anhui

ncbi_organism_name: Pseudanabaena sp. Chao 1811

ncbi_strain_identifiers: Chao 1811

ncbi_submitter: University of Science and Technology of China


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Henriciella sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Viet Nam: Cao Phong; Hoa Binh

ncbi_isolation_source: orange plant root adhering soil

ncbi_organism_name: Brevibacillus sp. HB1.1

ncbi_submitter: ENDOBICA


ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__environmental samples;s__uncultured Candidatus Peregrinibacteria bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_assembly_name: SPADES assembly of Enterobacter cloacae ND20

ncbi_country: USA

ncbi_isolation_source: excreted bodily substance

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: Pacific Ocean: Western North Pacific Station S1

ncbi_isolation_source: Western North Pacific Station S1

ncbi_organism_name: Halioglobus japonicus

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Prolixibacteraceae bacterium


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Institute of Antibiotics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Anaeroglobus sp.


ncbi_organism_name: uncultured Gilvimarinus sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Weissella confusa

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Klebsiella sp. 123941

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Smithella sp.

ncbi_submitter: University of Iowa


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Robinsoniella sp.


ncbi_assembly_name: freshwater MAG --- KR5_bin-021

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: BILS


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Helicobacter pylori SA233A

ncbi_submitter: MHH


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Peru

ncbi_submitter: SC


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Sphingobacterium sp. UBA6303

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: NNAb 2461

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_isolation_source: throat

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_organism_name: Agrobacterium radiobacter

ncbi_submitter: National Academy of Agrarian Sciences of Ukraine


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: United Kingdom

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Candidatus Nanopelagicus abundans

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;s__Candidatus Nanopelagicus abundans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;s__Candidatus Nanopelagicus abundans


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_country: Germany: near Munchenroda; Jena

ncbi_isolation_source: pine forrest soil between two spruce trees

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: desert soil crust

ncbi_organism_name: Microcoleus vaginatus FGP-2

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_country: China: Nanping City; Fujian Province

ncbi_isolation_source: dust

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_country: China: Shenzhen; Guangdong

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium sp. KB893862 SZCCT0404

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Blood Peripheral

ncbi_submitter: Monash University


ncbi_submitter: Instituto Superior Tecnico


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces spororaveus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: Natural mineral water

ncbi_organism_name: Aquabacterium sp. CECT 9606

ncbi_submitter: University of Valencia, Spain

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp. CECT 9606


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG10394

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Denmark

ncbi_isolation_source: Hospitalized patient

ncbi_submitter: Copenhagen University Hospital Hvidovre


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F52748


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: BGI


ncbi_organism_name: uncultured Candidatus Brevefilum sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Brevifilum;x__environmental samples;s__uncultured Candidatus Brevefilum sp.


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Streptomyces sp. NPDC056660

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Microbacterium sp. NPDC064943


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Aquirufa novilacunae

ncbi_submitter: University of Innsbruck


ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Tissierellaceae bacterium


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Pseudoalteromonas agarivorans

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Gemmatales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: cold seep

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Germany

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Guatemala

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Duke University


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: wound mouth

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Spain

ncbi_isolation_source: Hospital Universitario Marques de Valdecilla (Santander)

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: CNAG-CRG


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Saudi Arabia: KAUST Harbor; Red Sea

ncbi_genome_category: derived from single cell

ncbi_isolate: SCGC AAA795-G10

ncbi_isolation_source: single cell amplified by MDA; pelagic marine waters

ncbi_organism_name: Bacteroidetes bacterium SCGC AAA795-G10

ncbi_strain_identifiers: SCGC AAA795-G10

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium SCGC AAA795-G10


ncbi_country: Argentina: Matanza River; Buenos Aires

ncbi_isolation_source: extremely polluted river water

ncbi_submitter: Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Aeromonadales;f__Aeromonadaceae;g__Aeromonas;s__Aeromonas salmonicida;sb__Aeromonas salmonicida subsp. pectinolytica;x__Aeromonas salmonicida subsp. pectinolytica 34mel


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_country: Canada: Halifax

ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Blautia obeum

ncbi_submitter: BGI


ncbi_country: Mexico: Jalisco

ncbi_isolation_source: blood

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Universidad de Sonora


ncbi_organism_name: Pseudomonas aeruginosa B3-20M

ncbi_submitter: DTU


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA1484

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lactococcus sp.


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Alistipes senegalensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bdellovibrio sp. ZAP7

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Candidatus Tetragenococcus pullicola

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Ghana: Accra

ncbi_isolation_source: Livestock farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_country: Puerto Rico

ncbi_isolation_source: internal stem tissue

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Canada: British Columbia;Surrey

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: India: Udupi district

ncbi_isolation_source: respiratory secretions and blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Manipal University


ncbi_country: USA: San Francisco Bay

ncbi_isolate: CAL

ncbi_isolation_source: Perchlorate-reducing enrichment

ncbi_organism_name: Pseudomonas sp.

ncbi_strain_identifiers: CAL


ncbi_organism_name: uncultured Alistipes sp.


ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium pseudolongum;sb__Bifidobacterium pseudolongum subsp. globosum;x__Bifidobacterium pseudolongum subsp. globosum DSM 20092


ncbi_country: Norway

ncbi_isolation_source: Airway specimen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Tibet

ncbi_isolation_source: Tibet

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tianjin University of Science and Technology


ncbi_country: France: Normandy

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Actinomycetaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: sputum sample from patient

ncbi_organism_name: Staphylococcus aureus LCT-SAO

ncbi_strain_identifiers: LCT-SAO

ncbi_submitter: China CDC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Balneolaceae bacterium UBA4511

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__unclassified Balneolaceae;s__Balneolaceae bacterium UBA4511


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Alistipes sp.

ncbi_submitter: China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG14892

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Acidaminococcus sp. HCP3S3_G9_1

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: JiangSu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterellaceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Montreal

ncbi_isolation_source: Dental unit waterline

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Bordetella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: rat gut

ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Streptococcus suis T15

ncbi_submitter: Wageningen University & Research


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_assembly_name: Campylobacter coli CVM N4677 v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: CVM N4677

ncbi_submitter: FDA


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Infant stool

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: University of Parma


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Candidatus Roseilinea sp.

ncbi_submitter: RIKEN-BRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Thermofontia;x__Candidatus Thermofonsia Clade 3;g__Candidatus Roseilinea;x__unclassified Candidatus Roseilinea;s__Candidatus Roseilinea sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Unknown NS4 marine group bacterium AM_2502

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_organism_name: Gemmatimonadales bacterium UBA2989

ncbi_submitter: University of Queensland


ncbi_organism_name: Rothia dentocariosa

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Bacillus nitratireducens

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces sp. NBC_01614

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Flavobacterium sp. GSP14

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Fidelibacterota bacterium TCS55

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium TCS55


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Raoultella planticola

ncbi_submitter: University of Oxford


ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: broncholveolr lvge fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 469

ncbi_isolation_source: feces

ncbi_organism_name: Selenomonadales bacterium

ncbi_strain_identifiers: CIM:MAG 469

ncbi_submitter: Mayo Clinic


ncbi_isolation_source: pasteurized milk

ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: Cornell University


ncbi_country: Canada

ncbi_isolation_source: Seafood

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Hoylesella timonensis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: human stool

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Dyella sp. BiH032

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: California; Davis

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: surface water

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Netherlands: bulk soil; Pietersbierum

ncbi_isolation_source: soil

ncbi_organism_name: Lysobacter gummosus

ncbi_submitter: NIOO-KNAW


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Phytobacter sp.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Rutgers University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Lederbergia lenta

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Spartobacteria bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Polycyclovorans sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Uppsala University


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_submitter: South China Agricultural University


ncbi_country: USA: IA

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z

ncbi_organism_name: candidate division SR1 bacterium

ncbi_submitter: Stanford University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;x__unclassified Candidatus Absconditabacteria;s__candidate division SR1 bacterium


ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: China: Shaanxi

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Seawater (1m depth)

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Waltera intestinalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Tibet

ncbi_isolation_source: Salt lake soil

ncbi_organism_name: Parapedobacter tibetensis

ncbi_submitter: China General Microbiological Culture Collection Center


ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: South Africa: Manguzi Hospital

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0157

ncbi_submitter: Broad Institute


ncbi_country: China: Hubei

ncbi_isolation_source: catheter

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Wuhan CDC


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Baildon


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter baculiformis

ncbi_submitter: University of Antwerp, Belgium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Mesosutterella multiformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Rumen uncultured genome RUG14039

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: China: Liaocheng

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: USA: Chicago

ncbi_isolation_source: blood

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Korea:Muan

ncbi_isolation_source: Doenjang

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Toho University


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agriculture University


ncbi_organism_name: Bacillus sp. FSL R5-0416

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R5-0416


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: the seqafrica consortium


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: NY

ncbi_isolation_source: Fluid

ncbi_organism_name: Staphylococcus aureus DAR1815

ncbi_submitter: Broad Institute


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: USA: Indian River Lagoon; Florida

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Central Florida


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of East Anglia


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5349

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5349


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: City University of Hong Kong


ncbi_country: USA: Puget Sound; Washington

ncbi_isolation_source: kidney

ncbi_organism_name: Vibrio ordalii ATCC 33509

ncbi_submitter: Oregon Health Sciences University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio ordalii;x__Vibrio ordalii ATCC 33509


ncbi_country: India: Uttar Pradesh; Jalaun; Odotpura

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Streptococcus mutans


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Beijing

ncbi_isolation_source: Pyometra

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Salmonella enterica

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolate: GBBC 2123

ncbi_isolation_source: leaf spots

ncbi_organism_name: Xanthomonas hydrangeae

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: USFDA


ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: Japan: Wakayama

ncbi_organism_name: Pseudomonas morbosilactucae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Mahidol University


ncbi_organism_name: Faecalibacterium sp.


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolate: SPRUCE 413

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 413

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Xinjiang Academy of Agricultural Sciences


ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Mycolicibacterium septicum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Tardiphaga sp. 215_C5_N2_1

ncbi_submitter: VIB


ncbi_assembly_name: Rumen uncultured genome RUG11253

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: freshwater MAG --- VK2_bin-1291

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: Ondokuz Mayis University, Faculty of Veterinary Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Bangladesh Council of Scientific and Industrial Research (BCSIR)


ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Terriglobia bacterium


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Xiamen; Fujian

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_country: Brazil: Salvador

ncbi_organism_name: Leptospira sp. Fiocruz LV3954

ncbi_strain_identifiers: Fiocruz LV3954

ncbi_submitter: J. Craig Venter Institute


ncbi_assembly_name: freshwater MAG --- F-4_bin-024

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Desulfuromonadales bacterium


ncbi_isolation_source: Brine

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_isolation_source: marine

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Shewanella sairae

ncbi_submitter: Toho University


ncbi_country: Taiwan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Luteimonas galliterrae

ncbi_submitter: Beijing Forestry University


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Candidatus Copromorpha sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;x__Eubacteriaceae incertae sedis;g__Candidatus Allocopromorpha;x__unclassified Candidatus Copromorpha;s__Candidatus Copromorpha sp.


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Mexico: Morelos

ncbi_isolate: NFDO

ncbi_isolation_source: adult female whole insect body collected from Opuntia sp.

ncbi_strain_identifiers: NFDO

ncbi_submitter: Centro de Ciencias Genomicas-UNAM


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Boston

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae MGH 59

ncbi_strain_identifiers: MGH 59

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MGH 59


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_submitter: GNS Science


ncbi_country: Ireland

ncbi_isolation_source: Supermarket/Coleslaw

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_submitter: University of KwaZulu Natal


ncbi_country: Viet Nam

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 3 0 to 5cm

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Northeastern University


ncbi_country: USA

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Portugal: Tavira; Salinas de Tavira

ncbi_isolation_source: anoxic mud of evaporation pond

ncbi_organism_name: Sedimentisphaera salicampi

ncbi_submitter: Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures


ncbi_country: China: Hunan

ncbi_isolation_source: xylem sap

ncbi_organism_name: Bacillus zanthoxyli

ncbi_strain_identifiers: QYCK 21

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Tanzania

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: lab collection

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Tianjin university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Frigoribacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Nanjing University


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: freshwater

ncbi_organism_name: Acidimicrobium sp.

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG14541

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Africa: Rietvlei

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0027

ncbi_submitter: Broad Institute


ncbi_country: Guatemala

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CEITEC VETUNI


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Motilibacteraceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Edaphocola sp.


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Burkholderia sp. Bp9002

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Aeromonas jandaei Riv2

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Desulfuromusa sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Sichuan University


ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-175


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Humaya River; Adolfo Lopez Mateos dam

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Roseobacter sp.


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: blood

ncbi_submitter: Muhimbili University of Health and Allied Sciences


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Toho University


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: University of Texas at Dallas


ncbi_organism_name: Candidatus Nanosyncoccaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;x__unclassified Candidatus Nanosyncoccaceae;s__Candidatus Nanosyncoccaceae bacterium


ncbi_organism_name: uncultured Nitrospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: OM182 bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;s__OM182 bacterium


ncbi_country: Chile: Andacollo

ncbi_organism_name: Acidithiobacillus ferriphilus

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: Populus rhizosphere soil

ncbi_organism_name: Starkeya sp. ORNL1

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Germany: Thuringia

ncbi_isolation_source: poultry feces

ncbi_organism_name: Aliarcobacter skirrowii

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Burkina Faso

ncbi_isolation_source: eggs

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_assembly_name: Rumen uncultured genome RUG505

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1214

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GP01-A1

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: MG1655 - CHLA

ncbi_submitter: Emory University


ncbi_country: China: Yunnan

ncbi_organism_name: Bifidobacterium sp. M0307

ncbi_submitter: China Agricultural University


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium sp. MSK151

ncbi_submitter: Duke University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Methylibium petroleiphilum

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: uncultured Coxiellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Manitoba


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Upper gallery; floor level; 50-70 cm from the wall

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG