ncbi_organism_name: uncultured Bacteroides sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Sweden

ncbi_genome_representation: full

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


ncbi_assembly_level: Complete Genome

ncbi_country: China: Guangzhou

ncbi_isolation_source: feces

ncbi_submitter: South China Agricultural University


ncbi_submitter: National Livestock&Fisheries Development Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Denmark: Aalborg E

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: China

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hangzhou Medical University


gtdb_representative: t

ncbi_country: United Kingdom: Norfolk (trap soil)

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The James Hutton Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: L'Oreal


ncbi_organism_name: Bacillus cereus group sp. MYBK52-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK52-1


ncbi_country: China: Henan

ncbi_isolation_source: BALF

ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: France: Nice

ncbi_isolation_source: respiratory track

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: IRBA


ncbi_assembly_name: freshwater MAG --- MJ120827B_bin-191

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_type_species_of_genus: t

ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Friedrich Schiller University Jena

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Micromonospora profundi

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University Graduate School of Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Fibrobacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;c__Fibrobacteria;x__environmental samples;s__uncultured Fibrobacteria bacterium


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Nanjing University


ncbi_submitter: University of Wyoming


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Oceanobacillus sojae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Aalborg University


ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: UIUC


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: INRA


ncbi_country: South Korea: Daejon

ncbi_isolation_source: granule sludge

ncbi_organism_name: Rhodanobacter lindaniclasticus

ncbi_refseq_category: reference genome

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Olsenella sp.


ncbi_country: China: Shenzhen

ncbi_organism_name: Roseburia sp. AF22-2LB

ncbi_submitter: BGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-117

ncbi_submitter: Broad Institute


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Stenotrophomonas sp.


ncbi_country: Germany: Hamburg-Reitbrook

ncbi_isolation_source: water

ncbi_organism_name: Bacteroidetes bacterium UBA7674

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA7674


ncbi_country: USA: New Hampshire

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_strain_identifiers: HPB

ncbi_submitter: New England College


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Bdellovibrio sp. SKB1291214

ncbi_submitter: CENTRO DE BIOTECNOLOGIA GENOMICA, INSTITUTO POLITECNICO NACIONAL


ncbi_organism_name: Minisyncoccota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6493

ncbi_submitter: Ministry of Science and Technology of China


ncbi_isolation_source: sea water

ncbi_organism_name: Flavobacteriales bacterium UBA4466

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Switzerland

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_country: USA:New York; Morrisania

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Durham; NC

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium sp. MSK078

ncbi_submitter: Duke University


ncbi_organism_name: Bacteroides sp. CAG:709

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: India: Aurangabad

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: Russia: Krasnodar region

ncbi_isolation_source: Rizosphere soil sample

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Agrofirma Urozhaynaya LLC


ncbi_assembly_level: Chromosome

ncbi_country: Japan: Yamanashi Pref

ncbi_organism_name: Actinomadura verrucosospora

ncbi_submitter: University of Cambridge


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit meat cut

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_country: Kazakhstan: Taraz

ncbi_isolation_source: mud

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: National Center for Biotechnology


ncbi_country: Georgia

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: NCDC Lugar Center


ncbi_organism_name: Flavihumibacter sp.

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: not provided

ncbi_organism_name: Mitsuokella sp. oral taxon 131

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella;x__unclassified Mitsuokella;s__Mitsuokella sp. oral taxon 131


ncbi_submitter: University of Illinois at Urbana Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: PA

ncbi_isolation_source: Colon

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Wellcome Trust Sanger Insititute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum;x__Mycobacterium tuberculosis variant africanum GM041182


ncbi_country: Canada: Lacombe

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Companilactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Acetobacter orientalis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Mexico: Jiutepec; Morelos

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Genomic Sciences, UNAM


ncbi_organism_name: Diaphorobacter sp.


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Alterileibacterium sp.

ncbi_submitter: University of California, Davis


ncbi_country: China: Sichuan

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: United Kingdom

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli O157

ncbi_submitter: Public Health England


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: Chinese Academy of Science


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 105

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: SNUC 136

ncbi_submitter: University of Calgary


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Salmonella sp. SAL4430

ncbi_submitter: Zhejiang university


ncbi_country: Sudan

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: King Abdulaziz University


ncbi_organism_name: uncultured Erythrobacteraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paenibacillus sp. FSL R5-0475

ncbi_submitter: Penn State


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Chicago

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_country: Ireland: Kinsale

ncbi_isolation_source: gill

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: Cefas


ncbi_organism_name: uncultured Limnohabitans sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Lachnospirales bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Firmicutes bacterium UBA3899

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA3899


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_country: French Guiana

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: ZC4 (Zoo Composter number 4) at the Sao Paulo Zoo

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Instituto de Quimica


ncbi_isolation_source: rat gut

ncbi_organism_name: Clostridiales bacterium UBA7200


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Austria: Vorarlberg

ncbi_isolation_source: feces

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: China: Jinan

ncbi_isolation_source: Tap water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_country: USA: Norton; KS

ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: University of Nebraska-Lincoln


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Sea foam

ncbi_organism_name: Loktanella sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: USA: Colorado;Grand_Junction

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Ornithinimicrobium sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: Florida; Summerland Key

ncbi_organism_name: Solwaraspora sp. WMMD1047

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_assembly_name: De novo assembly of KCRI isolate RDK43_77E

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: USA: California

ncbi_isolation_source: chicken

ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: USDA


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: University of Queensland


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Lasioglossum villosulum


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Niyogibacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Niyogiibacteriota;x__unclassified Candidatus Niyogibacteria;s__Candidatus Niyogibacteria bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: Viet Nam

ncbi_isolation_source: Fermented orange

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_country: South Korea

ncbi_isolation_source: Wetland

ncbi_organism_name: Flavobacterium sp. N1946

ncbi_submitter: Jeju National University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: University of Chicago


ncbi_isolation_source: salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: Throat Culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_country: Antarctica

ncbi_isolation_source: H2-incubated subglacial sediment

ncbi_organism_name: Sulfuriferula multivorans

ncbi_submitter: Institute of Oceanography, Shanghai Jiao Tong University, China


ncbi_isolation_source: Faeces


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany: Volcanic Eifel; Andernach

ncbi_isolation_source: groundwater from cold water geyser; filtered on 0.1um pore size filters

ncbi_submitter: University Duisburg-Essen


ncbi_country: Germany: Northern Germany

ncbi_isolation_source: skimmed milk concentrate

ncbi_organism_name: Pseudomonas saxonica

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Spain: Mallorca Island

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: Spanish National Research Council (CSIC), Institute for Sustainable Agriculture


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human gut


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: China: Xiamen

ncbi_isolation_source: sediment

ncbi_organism_name: Sutcliffiella horikoshii

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Soil

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. R5(2019)

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tui Malila hydrothermal plume 10m

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Methylophaga sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: USA

ncbi_isolation_source: hide

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3317-1

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- MJ110516A_bin-827

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis ERV25

ncbi_submitter: Washington University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Roseateles toxinivorans

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Actinomadura sp. K4S16

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_assembly_name: Rumen uncultured genome RUG10642

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Secundilactobacillus sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV214

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: IA

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Salmonella enterica

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium CG10_big_fil_rev_8_21_14_0_10_46_32


ncbi_country: USA: New York

ncbi_isolation_source: patient s peritoneal fluid

ncbi_organism_name: Neisseria wadsworthii

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: Helicobacter pylori 26695-1CH

ncbi_submitter: Oita university


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Vreelandella profundi

ncbi_submitter: OUC


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 8865

ncbi_submitter: University of Exeter


ncbi_organism_name: Candidatus Bacteroides avicola

ncbi_submitter: Quadram Institutte


ncbi_country: Australia: Melbourne

ncbi_isolation_source: other

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_organism_name: Luteibacter anthropi

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources.


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: The University of Queensland


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: plant

ncbi_organism_name: Bacillus velezensis TrigoCor1448

ncbi_submitter: Novozymes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis;x__Bacillus velezensis TrigoCor1448


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College Dublin


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas amygdali pv. mellea

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. mellea


ncbi_country: Belgium: Wallonia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_submitter: Center for Microbial Communities


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__environmental samples;s__uncultured Candidatus Sumerlaeota bacterium


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Methylobacterium sp. NPDC097414

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Aquirufa sp.


ncbi_organism_name: Enterococcus sp. AZ152

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Staphylococcaceae bacterium


ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_country: Denmark: Randers

ncbi_isolation_source: activated sludge from Rand_18-Q3-R56-63

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Firmicutes bacterium CAG:176

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:176


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_genome_category: derived from single cell

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences


ncbi_country: Antarctica: Mackay Glacier regions; Mount Seuss

ncbi_isolation_source: mineral soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Monash University


ncbi_country: China: Shandong

ncbi_isolation_source: commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Zipacnadia bacterium

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;c__Candidatus Zipacnadia;x__unclassified Candidatus Zipacnadia;s__Candidatus Zipacnadia bacterium


ncbi_country: Poland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_country: USA

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_assembly_name: Rumen uncultured genome RUG11070

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy: Ancona

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_country: Colombia

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. UA686


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Humaya River; La Guasima

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_country: India: Maan Village; Leh

ncbi_isolation_source: pea root nodules

ncbi_organism_name: Rhizobium indicum

ncbi_strain_identifiers: JKLM 13E

ncbi_submitter: National Centre for Cell Science


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: Other

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pseudomonas sp. AN3A02

ncbi_submitter: Universidad Autonoma de Chile


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Ferrimonas gelatinilytica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ileibacterium sp.

ncbi_submitter: EMG


ncbi_country: Canada: Axel Heiberg Island

ncbi_isolation_source: Ice-wedge polygon

ncbi_organism_name: Rhodanobacter glycinis

ncbi_submitter: Universite Laval


ncbi_assembly_name: Rumen uncultured genome RUG14590

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: stool sample

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Synechococcus sp. R3-13

ncbi_submitter: University of Montana


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: IFSC USP


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Japan

ncbi_isolation_source: drain tip

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho university


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Paraprevotella clara CAG:116

ncbi_submitter: DTU


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Prairies Normandes

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Brigham Young University


ncbi_assembly_name: IMG-taxon 2651870175 annotated assembly

ncbi_organism_name: Kosakonia arachidis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Mozambique

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Zhejiang cancer Hospital


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: University of Nebraska-Lincoln

ncbi_isolation_source: whole bodies

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Nebraska-Lincoln


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: France: Corse; Propriano

ncbi_isolation_source: petiole from symptomatic leaf

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRA


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Exiguobacterium abrahamii

ncbi_submitter: Department of Botany, Kayavattom Campus, University of Kerala, Trivandrum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium abrahamii


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Grass with Cow Manure

ncbi_strain_identifiers: GB T3 LAM CEF 6

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Thermodesulfovibrionia bacterium

ncbi_submitter: Northwestern University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: Yucatan

ncbi_isolation_source: feces

ncbi_submitter: CINVESTAV-IPN


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Canada: Guelph

ncbi_isolation_source: Seed mucilage

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Guelph


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1177

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-7529

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: USA: Missouri; St. Louis

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium avium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;s__Candidatus Kerfeldbacteria bacterium RIFCSPLOWO2_01_FULL_48_11


ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Macinerneyibacteriota;x__unclassified Candidatus Mcinerneyibacteriota;s__Candidatus Mcinerneyibacteriota bacterium


ncbi_country: Lebanon

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_country: New Zealand: Canterbury

ncbi_isolation_source: potato samples

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd.


ncbi_organism_name: Lactococcus lactis


ncbi_assembly_name: freshwater MAG --- MJ130916A_bin-0443

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_assembly_name: Salmonella enterica CVM N44703 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Switzerland

ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shandong; Weifang

ncbi_isolation_source: water

ncbi_organism_name: Pseudoalteromonas piscicida

ncbi_submitter: Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences


ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA

ncbi_organism_name: Escherichia coli TW00353

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Eubacterium sp. CAG:202

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:202


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: cloacal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Vicingus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_organism_name: Escherichia coli J53

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Abuja


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: MRSN BI Team


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolate: AOP29_A1_coeur _bin _9

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: AOP29_A1_coeur _bin _9

ncbi_submitter: Genoscope


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Roseburia hominis


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Qingdao Binhai University


ncbi_submitter: Universiti Putra Malaysia


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_isolate: SPRUCE 56

ncbi_organism_name: Candidatus Aminicenantales bacterium

ncbi_strain_identifiers: SPRUCE 56

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;x__unclassified Candidatus Aminicenantales;s__Candidatus Aminicenantales bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Smithella sp.

ncbi_submitter: University of Iowa


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_organism_name: Ralstonia sp. JGI 0001001-A05

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: cecal content

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Manhattan;x__Salmonella enterica subsp. enterica serovar Manhattan str. SA20034532


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agriculture University


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium tertium

ncbi_submitter: EMG


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_submitter: Linnaeus University


ncbi_country: USA: SD

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-b_bin-432

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolate: Helicobacter suis

ncbi_isolation_source: Pig stomach

ncbi_organism_name: Helicobacter suis

ncbi_strain_identifiers: Helicobacter suis;36;P13

ncbi_submitter: GHENT UNIVERSITY


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Moraxella sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Frateuria sp.

ncbi_submitter: Zhejiang University


ncbi_country: Korea: Buyeo

ncbi_isolation_source: water reservoir

ncbi_organism_name: Chryseobacterium aquaticum

ncbi_submitter: GCAT-SEEK


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Wenzhou

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: Surveillance

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_country: China: Hebei

ncbi_isolation_source: rhizosphere of peach

ncbi_organism_name: Paenibacillus caui

ncbi_submitter: China agricultural university


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Japan:Hokkaido; Sapporo

ncbi_isolation_source: forest soi

ncbi_organism_name: Alphaproteobacteria bacterium SO-S41

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yangzhou

ncbi_isolation_source: intestinal contents from a porcine slaughterhouse

ncbi_organism_name: Escherichia sp. NIC26-1

ncbi_submitter: YangZhou university


ncbi_organism_name: Microcoleus sp.

ncbi_submitter: University of Neuchatel


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Bangladesh: Hajiganj

ncbi_isolation_source: Human feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: icddr,b


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Levyella massiliensis

ncbi_submitter: ebi


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Mahidol University


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Amphritea sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The Ohio State University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Pakistan: Mithi

ncbi_isolation_source: Plant Root

ncbi_organism_name: Niallia circulans

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_assembly_name: Rumen uncultured genome RUG12686

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Puerto Rico

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira bandrabouensis

ncbi_submitter: Northern Arizona University


ncbi_country: Portugal

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: China: Xinjiang

ncbi_isolation_source: desert soil

ncbi_organism_name: Nonomuraea sp. SYSU D8015

ncbi_strain_identifiers: SYSU D8015

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Pseudomonas sp. UM16

ncbi_submitter: Unversidad Michoacana de San Nicolas de Hidalgo


ncbi_country: Cambodia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Faculty of Veterinary Sceince, Chulalongkorn University


ncbi_isolation_source: hide

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_country: France

ncbi_isolation_source: Minced meat

ncbi_submitter: Anses


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: EMG


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Geobacteraceae bacterium


ncbi_organism_name: Bacteroides intestinalis


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Alcaligenes nematophilus

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudobowmanella zhangzhouensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ural Scientific Research Institute of Maternity and Child Care


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_country: United Kingdom: Scotland; Western General; Edinburgh

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Aberdeen


ncbi_country: Egypt

ncbi_submitter: bioMerieux


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: United Arab Emirates

ncbi_organism_name: Fluoribacter dumoffii

ncbi_submitter: Danish Technical University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: China-Japan friendship hospital


ncbi_country: USA: Florida

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CDC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium GW2011_GWC2_41_11


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Sphingomonas sp. 28-63-12


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shihezi

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Shihezi University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine


ncbi_country: Portugal

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Argentina: Rosario; Santa Fe

ncbi_isolation_source: Patient with urinary tract infection

ncbi_organism_name: Serratia marcescens

ncbi_submitter: INDEAR


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_strain_identifiers: SSHP-C

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: Trichococcus R210

ncbi_organism_name: Trichococcus ilyis

ncbi_submitter: WAGENINGEN UNIVERSITY


ncbi_submitter: Mahidol University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Wound Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Campylobacter showae


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Tang lab


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Sphingomonas sp. CFBP 13706

ncbi_submitter: INRAE


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Peptoniphilus lacrimalis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Austria

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_country: India

ncbi_isolation_source: stool

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_isolation_source: sludge from WWTP

ncbi_submitter: Shandong University


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Phocoenobacter atlanticus subsp. cyclopteri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-05681

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_submitter: EMG


ncbi_country: Tunisia

ncbi_isolation_source: seafood

ncbi_submitter: ANSES


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Levilactobacillus zymae

ncbi_submitter: CSIR-North East Institute of Science and Technology (CSIR-NEIST)


ncbi_organism_name: Coprobacillus cateniformis JCM 10604

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Canada: Quebec

ncbi_isolation_source: Animal - Avian-Environment swab

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA19981522


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Roseicyclus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsia sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Japan

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Streptomyces coacervatus

ncbi_submitter: Kasetsart University


ncbi_assembly_name: Rumen uncultured genome RUG225

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Balneolaceae bacterium UBA1971

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__unclassified Balneolaceae;s__Balneolaceae bacterium UBA1971


ncbi_organism_name: Clostridium botulinum Ba4 str. 657

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum B;x__Clostridium botulinum Ba4 str. 657


ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_organism_name: Allofournierella massiliensis


ncbi_country: Germany: North Rhine-Westphalia

ncbi_isolation_source: soil

ncbi_organism_name: Caldicellulosiruptor sp. DIB 104C

ncbi_strain_identifiers: DIB 104C

ncbi_submitter: BluCon Biotech GmbH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;o__Caldicellulosiruptorales;f__Caldicellulosiruptoraceae;g__Caldicellulosiruptor;x__unclassified Caldicellulosiruptor;s__Caldicellulosiruptor sp. DIB 104C


ncbi_country: Brazil: Rio Grande do Sul; Porto Alegre

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D1_bin-0779

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: Fusicatenibacter sp. 2789STDY5834925

ncbi_submitter: SC


ncbi_country: USA: Montana; Missoula

ncbi_isolate: SYM

ncbi_strain_identifiers: SYM

ncbi_submitter: UNIVERSITY OF SOUTH BOHEMIA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Symbiopectobacterium;s__Candidatus Symbiopectobacterium endolongispinus


ncbi_organism_name: Kiritimatiellales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lacticaseibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Russia: Kamchatka

ncbi_isolation_source: Water sample and microbial mat on an anthropogenic pipe from caldera Uzon

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: THE INSTITUTE OF CYTOLOGY AND GENETICS


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Victivallales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Isosphaeraceae bacterium


ncbi_organism_name: Dysosmobacter welbionis


ncbi_organism_name: Acinetobacter sp. 22301

ncbi_submitter: Yantai University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp7 AA8

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp7 AA8

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Kenya

ncbi_organism_name: Bacillales bacterium UBA6465

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Fujian

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: UPH_Lacticaseibacillus paracasei subsp. paracasei_BS2-PB5

ncbi_submitter: Universitas Pelita Harapan, Faculty of Science and Technology


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Togo: Lome

ncbi_isolation_source: pus

ncbi_submitter: Universite de Lome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: UTI

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Tufts University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Kordiimonadaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Planctomycetota bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_country: United Kingdom: UK anaerobe Reference Unit; Cardiff

ncbi_isolation_source: heart

ncbi_organism_name: Cutibacterium sp. 37298

ncbi_submitter: Cardiff University


ncbi_country: Chile

ncbi_isolation_source: bologna sausage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Acinetobacter portensis

ncbi_submitter: Yangzhou University


ncbi_organism_name: Shewanella vaxholmensis

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: USA:North Carolina

ncbi_isolation_source: Fly

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: India

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter lari

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_country: Spain: Motril

ncbi_isolation_source: gut

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Granada


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pittsburgh


ncbi_country: Italy

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: saliva

ncbi_organism_name: Chryseobacterium mucoviscidosis

ncbi_submitter: Human Microbiology Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Candidatus Woodwardiibium gallinarum

ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Woodwardiibium;s__Candidatus Woodwardiibium gallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Woodwardiibium;s__Candidatus Woodwardiibium gallinarum


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_country: Ireland

ncbi_isolation_source: salmon

ncbi_submitter: Teagasc Food Research Centre


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01491

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01491


ncbi_country: Spain: Mediterranean Sea in southeast Spain

ncbi_isolation_source: Mediterranean Sea

ncbi_organism_name: Marinomonas mediterranea MMB-1

ncbi_submitter: University of Otago


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: China

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Capital Institute of Pediatrics,Beijing, China


ncbi_isolation_source: human gut

ncbi_organism_name: Vitreoscilla massiliensis


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Ureaplasma sp.


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France

ncbi_organism_name: Nocardia asteroides NBRC 15531

ncbi_submitter: UMR5557 Laboratoire d'Ecologie Microbienne


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0909

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Switzerland

ncbi_isolation_source: tomato roots

ncbi_organism_name: Pseudomonas kilonensis

ncbi_submitter: JLU


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Austria

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: National Health Research Institutes


ncbi_country: USA: Catalina Island; CA

ncbi_isolation_source: iron-sulfide mineral

ncbi_organism_name: Hydrogenovibrio sp. SC-1

ncbi_submitter: University of Southern California


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Aarhus University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_isolation_source: screen

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: New Zealand

ncbi_submitter: Massey University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter ludwigii


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Poland

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: USA: IL

ncbi_isolation_source: root

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: Finland

ncbi_isolation_source: Blood

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-400

ncbi_submitter: JCVI


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_assembly_name: IMG-taxon 2521172644 annotated assembly

ncbi_organism_name: Pseudomonas sp. LAMO17WK12:I6

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Alteromonas macleodii


ncbi_isolation_source: Corse; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: China: Hubei

ncbi_isolation_source: probiotic product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: south china agriculture university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG11091

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10842

ncbi_organism_name: uncultured Sarcina sp.


ncbi_organism_name: Acinetobacter baumannii 1571545

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Hong Kong

ncbi_isolation_source: sediment

ncbi_organism_name: Escherichia sp. E4694

ncbi_submitter: The Hong Kong University of Science and Technology


ncbi_country: South Korea

ncbi_isolation_source: spleen

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Pukyong national university


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gallolyticus;sb__Streptococcus gallolyticus subsp. gallolyticus;x__Streptococcus gallolyticus subsp. gallolyticus TX20005


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: EMG


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Guangxi

ncbi_submitter: Northwest A&F University


ncbi_country: Egypt

ncbi_isolation_source: Ground beef

ncbi_submitter: USDA-ARS-USNPRC


ncbi_assembly_name: freshwater MAG --- Umea1_bin-2529

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Carboxylicivirga fragile

ncbi_submitter: Shandong University


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: China: Hengyang

ncbi_isolation_source: blood

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_country: USA: OR

ncbi_isolation_source: ground turkey

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_country: Pakistan

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_isolation_source: broncho-alveolar lavage

ncbi_submitter: Wuhan CDC


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: bacterium


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Enterobacter hormaechei subsp. xiangfangensis

ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Christensenellales bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Poriferisodalis sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Candidatus Poriferisodalaceae;g__Candidatus Poriferisodalis;x__unclassified Candidatus Poriferisodalis;s__Candidatus Poriferisodalis sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp. S1

ncbi_strain_identifiers: rhizosphere soil of Talipariti tiliaceum;bgisy038

ncbi_submitter: BGI Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Roseburia faecis


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Paracoccaceae bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Zhejiang Cancer Hospital