ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-6847

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 24860_3

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Unknown

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Canada: Ontario

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


gtdb_representative: t

ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_country: USA: New York City

ncbi_isolation_source: stool

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Queensland


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Bulleidia sp.


ncbi_assembly_level: Scaffold

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: South Korea: Chungcheongnam-do

ncbi_isolation_source: Working area in farm

ncbi_submitter: Korea University Graduate School


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Slovakia: Ruzomberok

ncbi_isolation_source: urine

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome


ncbi_country: Spain

ncbi_isolation_source: pig farm

ncbi_submitter: Universite Laval


ncbi_country: France

ncbi_submitter: Anses


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea: River Gapcheon

ncbi_isolation_source: Freshwater stream system; activated sludge

ncbi_organism_name: Deinococcus aquaticus

ncbi_refseq_category: reference genome

ncbi_submitter: Glendale Community College


ncbi_country: USA: Michigan

ncbi_submitter: Case Western Reserve University


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Antarctica: Fumarole Bay; Deception Island

ncbi_isolation_source: Sediment

ncbi_organism_name: Geobacillus sp. LEMMJ02

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Lacombe

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Hylemonella sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: Algeria

ncbi_isolation_source: Bathing waters

ncbi_submitter: Institut Pasteur


ncbi_country: Germany: Tubingen

ncbi_isolation_source: leaf

ncbi_organism_name: Methylobacterium sp. Leaf125

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: human gut

ncbi_organism_name: Peptoniphilus harei

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: University of Agriculture in Krakow


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: CAU


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus cremoris;sb__Lactococcus cremoris subsp. cremoris;x__Lactococcus cremoris subsp. cremoris A76


ncbi_country: Australia

ncbi_organism_name: Pseudomonas syringae pv. tagetis

ncbi_strain_identifiers: ICMP 6369

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 7;x__Pseudomonas syringae pv. tagetis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: Canada: Levis

ncbi_isolation_source: fascia from patient following surgery

ncbi_submitter: Institut national de sante publique du Quebec


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: gut

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Italy

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University of Parma


ncbi_country: Ireland

ncbi_isolation_source: Food (poultry)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 09.F.08


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Streptomyces herbicida

ncbi_submitter: School of life science

ncbi_type_material_designation: assembly from type material


ncbi_country: South Korea: Oncheon 2-dong 216-3; Yuseong-gu; Daejeon Metropolitan City

ncbi_isolation_source: Soil

ncbi_organism_name: Kitasatospora acidiphila

ncbi_submitter: Chungnam National University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Zurich


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Qinhaungdao

ncbi_isolation_source: Cooling tower water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_assembly_name: Rumen uncultured genome RUG13757

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: China: Hongan

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Roseburia amylophila

ncbi_submitter: UIUC


ncbi_organism_name: Pseudomonas veronii

ncbi_submitter: EMG


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: University of Amsterdam


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Ocean University of China


ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_organism_name: Granulicatella adiacens

ncbi_submitter: NHRI


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-0466

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Capnocytophaga sp.


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Taiwan: Taichung

ncbi_isolation_source: Pus

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China Medical University


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: India

ncbi_isolation_source: Adventitious roots

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Post Graduate Department of Biosciences


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Green_R_1

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Universite de Sherbrooke


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA

ncbi_isolation_source: CSF

ncbi_submitter: FDA


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_country: Atlantic Ocean: South Atlantic; Mid-Ocean Ridge

ncbi_isolation_source: deep-sea sediment samples

ncbi_organism_name: Halomonas zincidurans B6

ncbi_submitter: Second Institute of Oceanography and Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus H22632

ncbi_submitter: Broad Institute


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8088

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus stratosphericus

ncbi_submitter: University of Malaya


ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas sp. GD04006

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas sp. 18083286

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: river water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: BRAC University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Nantong; Jiangsu province

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_country: Italy: Aosta

ncbi_isolation_source: cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: New Mexico

ncbi_isolation_source: normally sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: EMG


ncbi_country: France

ncbi_organism_name: Shigella sonnei


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: tracheal secretion

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: South Korea

ncbi_organism_name: Nocardioides alkalitolerans DSM 16699

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangzhou

ncbi_strain_identifiers: ST11 CRKP09

ncbi_submitter: PLA Southern Theater General Hospital


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Solibacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Solibacter;x__unclassified Candidatus Solibacter;s__Candidatus Solibacter sp.


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Jiangsu


ncbi_organism_name: Pararhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nitrospirillum viridazoti


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: shin wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Xanthomonas cannabis

ncbi_submitter: NSW Department of Primary Industries


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3072

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Ann Arbor; MI

ncbi_organism_name: Enterococcus faecalis EnGen0289

ncbi_submitter: Broad Institute


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany: Berlin

ncbi_organism_name: Escherichia coli

ncbi_submitter: Robert Koch Institute


ncbi_assembly_name: freshwater MAG --- Loclat_bin-05405

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: Weissella confusa


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: USA: Wyoming

ncbi_isolation_source: Aquatic Environment

ncbi_submitter: University of Wyoming


ncbi_country: China: Hohhot

ncbi_isolation_source: sour milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: university


ncbi_country: Japan:Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Bacillus sp. BML-BC021

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BML-BC021


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_submitter: URMC


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B082;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_organism_name: Methylocystis parvus OBBP

ncbi_strain_identifiers: OBBP

ncbi_submitter: CIB-CSIC


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Oregon State University


ncbi_assembly_name: Rumen uncultured genome RUG13425

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Greifswald

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: United Kingdom: Newcastle

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux


ncbi_country: Bangladesh

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_isolation_source: water-cooling system

ncbi_organism_name: Microcella frigidaquae

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_organism_name: Muriicola sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Denmark: Viby

ncbi_isolation_source: activated sludge from Viby_18-Q3-R106-67

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_country: South Africa:Stellenbosch

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Sinorhizobium fredii CCBAU 83622

ncbi_strain_identifiers: CCBAU 83622

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Sinorhizobium/Ensifer group;g__Sinorhizobium;x__Sinorhizobium fredii group;s__Sinorhizobium fredii;x__Sinorhizobium fredii CCBAU 83622


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Streptomyces scopuliridis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: FIOCRUZ


ncbi_organism_name: uncultured Defluviitaleaceae bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Gaiellaceae bacterium


ncbi_organism_name: Nonomuraea dietziae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_assembly_level: Chromosome

ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- Loc080925-8-8m_bin-134

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12710

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Psychromonas sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Paraliobacillus sp. JSM ZJ581

ncbi_strain_identifiers: JSM ZJ581

ncbi_submitter: Jishou University


ncbi_organism_name: Stenomitos frigidus ULC029

ncbi_submitter: University of Liege


ncbi_isolation_source: oral cavity- mouth

ncbi_organism_name: Treponema lecithinolyticum ATCC 700332

ncbi_submitter: Washington University


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Donghicola sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Bacillus sp. FSL H7-0353

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL H7-0353


ncbi_country: Finland: University of Jyvaskyla

ncbi_isolation_source: experimental exposure to phage

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Gaungdong

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Photorhabdus sp. S15-56

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: Kalamazoo County; MI

ncbi_isolation_source: Wintergreen Lake

ncbi_organism_name: Microcystis aeruginosa W13-15

ncbi_submitter: University of Michigan


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: extravasate fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_assembly_name: IMG-taxon 2615840713 annotated assembly

ncbi_organism_name: Thalassovita taeanensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Guangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangzhou center for disease control and prevention


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Pacific Ocean: South Pacific

ncbi_organism_name: Rhodobacteraceae bacterium EhC02

ncbi_submitter: University of Alberta


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: hepatopancreas

ncbi_submitter: Monash University


ncbi_organism_name: Pararoseburia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: feed additive Enterosan

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: Japan: Katsuura

ncbi_isolation_source: marine sediment

ncbi_organism_name: Nonlabens tegetincola

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_submitter: The Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 2009K0958


ncbi_isolation_source: cold seep

ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Shanghai Jiao Tong University Affiliated Six People's Hospital


ncbi_country: Czech Republic

ncbi_submitter: CEITEC VFU


ncbi_isolation_source: marine metagenome


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus sp. LM 4-2

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. LM 4-2


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_country: Afghanistan

ncbi_isolation_source: respiratory

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_assembly_name: Rumen uncultured genome RUG10114

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces


ncbi_country: Norway

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Portugal: Porto


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: Huzhou cdc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Vezurae

ncbi_organism_name: Vibrio ezurae

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anaerocolumna sp.

ncbi_submitter: The Microflora Danica Consortium


gtdb_type_species_of_genus: t

ncbi_country: Antarctica

ncbi_organism_name: Frigoriflavimonas asaccharolytica

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Puerto Rico

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira sanjuanensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: SC


ncbi_country: India: Vellore

ncbi_isolation_source: Respiratory specimen

ncbi_submitter: Christian Medical College, Vellore


ncbi_organism_name: Acholeplasma equifetale ATCC 29724


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Psychrobacter sp. Choline-3u-12

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: USA: Woods Hole

ncbi_isolation_source: polyp tissue

ncbi_organism_name: Pseudoalteromonas sp. P1-11

ncbi_submitter: Hans Knoell Institute


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: [Collinsella] massiliensis


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Ruminococcus gauvreauii

ncbi_submitter: Stanford University


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: pistachio

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. 316111868


ncbi_organism_name: Ancylobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Hangzhou

ncbi_isolation_source: pus

ncbi_submitter: Zhejiang University


ncbi_country: Algeria: Ain Baida-Ouargla

ncbi_isolation_source: water-salt lake

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: University of Alberta


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter thiooxydans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Kitasatospora sp. NPDC101157

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Olivibacter domesticus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Ghent University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: DS-I Africa


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium GWC2_42_51


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_strain_identifiers: CSNSembilan

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Southern Ocean

ncbi_isolate: PWAP

ncbi_isolation_source: pteropod gut

ncbi_organism_name: Mollicutes bacterium PWAP

ncbi_strain_identifiers: PWAP

ncbi_submitter: Palmer Antarctica Long Term Ecological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__unclassified Mollicutes;s__Mollicutes bacterium PWAP


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Pseudoalteromonas sp.

ncbi_submitter: University of Southern California


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus saccharolyticus;sb__Enterococcus saccharolyticus subsp. saccharolyticus;x__Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the seqafrica consortium


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Netherlands

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Birgitta Duim's shared submissions


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Sweden

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Russia: Moscow

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Germany: Jena

ncbi_isolation_source: rectal swab neonate

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_isolation_source: Homo sapiens

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Adjame


ncbi_country: Switzerland: Bern

ncbi_isolation_source: wound

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Bern


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Aminobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: 15m depth in Pacific Ocean

ncbi_organism_name: Prochlorococcus sp. W2

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Quebec

ncbi_isolation_source: manure

ncbi_organism_name: Serratia sp. Res13-Sevr-LER1-36-b

ncbi_submitter: Government of Canada


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Pseudooceanicola nitratireducens

ncbi_submitter: Tang lab


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Chicken litter

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: Russia: Bykovsky Peninsula;Polar Fox Lagoon

ncbi_isolation_source: Polar Fox Lagoon sediment taken using 3m corer (60 mm diameter)

ncbi_organism_name: Thermoanaerobaculaceae bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_country: China: Sichuan

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Limosilactobacillus allomucosae

ncbi_strain_identifiers: WILCCON 0054

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Treponema socranskii


ncbi_country: China: Haikou city; Hainan province

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_country: China

ncbi_isolation_source: sediment

ncbi_organism_name: Thioclava sp. NG1

ncbi_submitter: shantou university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Russia

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: National Research Center "Kurchatov Institute"


ncbi_country: USA: South Dakota

ncbi_isolation_source: bean blight

ncbi_organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens

ncbi_submitter: NASA Florida Space Grant Consortium


ncbi_country: USA: Williamsport

ncbi_isolation_source: Freshwater Creek

ncbi_organism_name: Flavobacterium sp. LC2016-12

ncbi_submitter: Lycoming College


ncbi_country: Japan: Okinawa Prefecture

ncbi_organism_name: Pseudomonas amygdali pv. dendropanacis

ncbi_strain_identifiers: ICMP 9150

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. dendropanacis


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Telelkebir


ncbi_country: USA: Stone County; Mississippi

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: University of Southern Mississippi


ncbi_organism_name: Candidatus Saccharimonas aalborgensis

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__Candidatus Saccharimonas aalborgensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__Candidatus Saccharimonas aalborgensis


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_submitter: Graduate School of Life and Environmental Sciences, Osaka Prefecture University


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_submitter: Peking University Third Hospital


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Curvibacter sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: France: Lille

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Maribacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-1 day 1372

ncbi_organism_name: Pseudothermotoga sp.

ncbi_submitter: The Ohio State University


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_assembly_name: Rumen uncultured genome RUG13962

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea rock

ncbi_organism_name: Thioclava atlantica

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas axonopodis pv. begoniae

ncbi_submitter: Wageningen University & Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas axonopodis;x__Xanthomonas axonopodis subcluster 9.1;x__Xanthomonas axonopodis pv. begoniae


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Calgary


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Serratia sp. CY68801

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY68801


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: Ruminococcus callidus


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Central Florida


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 3 10 to 15cm

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Northeastern University


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: food

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: China: Yangzhou

ncbi_isolation_source: sampling staff sole swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA2951


ncbi_organism_name: Chitinophaga cymbidii

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_assembly_name: freshwater MAG --- AM-2014-D4_bin-000

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolate: BARAN1 MAG

ncbi_isolation_source: Anaerobic digester biomass

ncbi_organism_name: Candidatus Bipolaricaulis anaerobius

ncbi_strain_identifiers: BARAN1 MAG

ncbi_submitter: AALBORG UNIVERSITY

ncbi_taxonomy: d__Bacteria;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;s__Candidatus Bipolaricaulis anaerobius

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;s__Candidatus Bipolaricaulis anaerobius


ncbi_organism_name: Streptomyces sp. NPDC057301

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangzhou

ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Carlsbad; New Mexico

ncbi_isolation_source: nematode community

ncbi_organism_name: Candidatus Xiphinematobacter sp.

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;g__Candidatus Xiphinematobacter;x__unclassified Candidatus Xiphinematobacter;s__Candidatus Xiphinematobacter sp.


ncbi_country: France

ncbi_isolation_source: Pleural liquid

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Actinotignum timonense


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFOXYB2_FULL_44_18


ncbi_assembly_name: De novo assembly of KCRI isolate RDK04_237C

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudarthrobacter sp. NPDC059871


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Taizhou Municipal Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDX8P102P-2

ncbi_submitter: South China Agricultural University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Germany: Hesse; Gross-Gerau

ncbi_isolation_source: salad kitchen drain

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_country: China: Sichuan

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Affiliated hospital of Southwest medical university


ncbi_organism_name: uncultured bacterium


ncbi_country: Belgium: Ghent

ncbi_isolation_source: phyllosphere

ncbi_organism_name: Pedobacter planticolens

ncbi_submitter: Ghent University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Brachymonas wangyanguii

ncbi_submitter: Shanxi Medical University


ncbi_isolate: Pseudomonas sp. JV551A1

ncbi_organism_name: Pseudomonas sp. JV551A1

ncbi_strain_identifiers: Pseudomonas sp. JV551A1


ncbi_organism_name: Acinetobacter baumannii MDR-TJ

ncbi_strain_identifiers: MDR-TJ

ncbi_submitter: Centre of Bioinformatics, Tianjin University, Tianjin 300072, China


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: India: Vellore

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC1172

ncbi_submitter: Christian Medical College


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Acetobacterium malicum subsp. dehalogenans

ncbi_submitter: Rutgers University


ncbi_country: Spain: Aracena; Maravillas Cave

ncbi_isolation_source: Cave wall

ncbi_organism_name: Streptomyces sp. MAR25Y5

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Pseudomonas sp. VM14

ncbi_organism_name: Pseudomonas shirazica


ncbi_country: USA: MI

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Michigan

ncbi_organism_name: Streptomyces sp. PvR006

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri Shi06HN250

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Actinobacillus sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: NY

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnoanaerobaculum sp.


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: Laboratorio de Biotecnologia del Recurso Microbiano


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Pauljensenia sp. UMB6358

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: NE

ncbi_isolation_source: feces (Sus scrofa)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Thailand: Phatthalung

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: USA:Madison; WI

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__aphid secondary symbionts;g__Candidatus Williamhamiltonella;s__Candidatus Williamhamiltonella defendens;x__Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)


ncbi_country: China: Guizhou

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guizhou University of Traditional Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Colombia: Antioquia

ncbi_isolation_source: urine

ncbi_submitter: International Center for Microbial Genomics - Universidad El Bosque


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Gardnerella swidsinskii

ncbi_submitter: IHU Mediterranee Infection


ncbi_assembly_name: MCACP

ncbi_organism_name: Neomoorella carbonis

ncbi_strain_identifiers: ACPs

ncbi_submitter: Georg-August-University Goettingen


ncbi_submitter: The University of Tokyo


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Antwerp


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Jiahui International Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Agrococcus sp. Ld7

ncbi_submitter: Station Biologique de Roscoff


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: uncultured Salinivenus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycetocola zhadangensis

ncbi_submitter: University of Mississippi


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Corynebacterium matruchotii

ncbi_submitter: Hospital Sirio-Libanes


ncbi_country: Canada: Nunavut; Northern Canada; Alexandra Fiord

ncbi_isolate: AFD bin23

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: AFD bin23

ncbi_submitter: Monash University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: uncultured Polyangiaceae bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Lausanne


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease Swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Wisconsin - Madison


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-338

ncbi_organism_name: Vampirovibrio chlorellavorus

ncbi_submitter: BILS


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Granulicatella sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG12339

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolate: CON6 bin25

ncbi_organism_name: Saccharofermentans sp.

ncbi_strain_identifiers: CON6 bin25

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Baekduia sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pseudomonas sp. AB6

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Agathobacter sp.


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_country: Germany

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Malaysia: Tioman Island; Pahang

ncbi_isolation_source: marine sediment

ncbi_organism_name: Blastococcus sp. KM273129

ncbi_submitter: University of Malaya


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. SARB31


ncbi_submitter: EMG


ncbi_submitter: ANSES Ploufragan


ncbi_country: Malaysia: KL

ncbi_isolation_source: gastric biopsy tissue

ncbi_organism_name: Helicobacter pylori UM037

ncbi_submitter: UM-UNSW-MGRC


ncbi_country: Tanzania: Arusha

ncbi_isolation_source: environmental

ncbi_submitter: Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar II 1,4,12,27:e,n,x:e,n,x


ncbi_organism_name: Xaviernesmea oryzae

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Phocaeicola sartorii


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Yersinia aldovae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans U138

ncbi_submitter: Cornell University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Ireland

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_submitter: University of Washington


ncbi_country: Denmark: Hullehavn

ncbi_isolation_source: surface of Fucus serratus

ncbi_organism_name: Cellulophaga baltica NN016038

ncbi_submitter: University of Arizona


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: UNIVERSIDAD DE JAEN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecium


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B245;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Breoghania sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium UBA2800

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2800


ncbi_assembly_name: Rumen uncultured genome RUG11822

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: BGI


ncbi_assembly_name: freshwater MAG --- YR1_bin-0212

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood of a 58-year-old endometrial cancer patient who had type 2 diabetes mellitus and relapsed after radiotherapy with multiple metastases to the lungs and abdominal cavity

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: South China University of Technology


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: USA: IL

ncbi_isolation_source: broncheoalveolar lavage

ncbi_organism_name: Francisella tularensis

ncbi_submitter: USAMRIID


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG14717


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pedococcus sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Texas

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0110

ncbi_submitter: Broad Institute


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Variovorax sp. V35

ncbi_submitter: Kyoto University


ncbi_country: Singapore

ncbi_isolation_source: Sewage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National University of Singapore


ncbi_country: China: Guangdong; Guangzhou

ncbi_isolation_source: water

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acididesulfobacter;s__Candidatus Acididesulfobacter guangdongensis


ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Roseimicrobium gellanilyticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: San Diego

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: LAC

ncbi_submitter: UC San Diego


ncbi_isolation_source: sediments

ncbi_organism_name: Patescibacteria group bacterium UBA6065

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA6065


ncbi_country: USA: Virginia

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. 20S_6.2_Bac1

ncbi_submitter: Washington University in St. Louis


ncbi_country: China: Sichuan

ncbi_isolation_source: slaughter house

ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Hungatella sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020050818


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Candidatus Methylopumilus planktonicus

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Curvibacter sp.

ncbi_submitter: University of Michigan


ncbi_isolate: AOP28_A2_surf _bin _2

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: AOP28_A2_surf _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Opitutus sp.


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Lunds Universitet

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Arcobacter sp.


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rochdale


ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiae bacterium RIFCSPHIGHO2_02_FULL_45_9


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0454

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: University of Waterloo


ncbi_country: Greece: Athens

ncbi_isolation_source: Stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Unniversity of Queensland


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-100

ncbi_submitter: Broad Institute


ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Taiwan

ncbi_isolation_source: hospital

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: University of Pittsburgh


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0307R


ncbi_country: France

ncbi_isolation_source: biofilm boat

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Japan

ncbi_isolation_source: Lung of a diseased pig

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Colombia: Cucuta

ncbi_isolation_source: pharyngeal swab from Venezuelan patient with diphtheria

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- KR4_bin-0110

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: NNEc 2829

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Pseudomonas aeruginosa MH27

ncbi_submitter: CeBiTec


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Eubacterium ramulus


ncbi_country: South Korea: Jinju

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Veillonella parvula


ncbi_organism_name: Roseburia inulinivorans


ncbi_country: China: SiChuan

ncbi_isolation_source: pig farm

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_country: China: WuHan

ncbi_isolation_source: wholesale market

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Cyanide and thiocyanate bioreactor

ncbi_organism_name: Erythrobacter sp. SCN 62-14

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Microcoleus sp. D3_18cC1

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Marinifilaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173


ncbi_isolation_source: CSF or blood culture

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: China

ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China Agricultural University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Ireland: Donegal Bay

ncbi_isolation_source: haemolymph

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: Cefas


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_assembly_name: IMG-taxon 2623621019 annotated assembly

ncbi_organism_name: Xylanibacter ruminicola

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Japan: Tsu City; Mie Prefecture

ncbi_isolation_source: soil

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Gifu University


ncbi_country: Russia: Moscow

ncbi_isolation_source: feces of 43-year-old healthy woman

ncbi_organism_name: Xylanibacter rarus

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Anaerolineaceae bacterium


ncbi_country: France: Kremlin-Bicetre

ncbi_organism_name: Shewanella bicestrii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Tistrella bauzanensis

ncbi_submitter: Shenzhen Bay Lab


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_isolate: VTEC

ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: Bull prepuce

ncbi_organism_name: Campylobacter fetus subsp. venerealis

ncbi_submitter: University of Saskatchewan


ncbi_country: USA: Pennsylvania; Centralia

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Michigan State University


ncbi_isolation_source: paddy soil

ncbi_organism_name: Geothrix campi

ncbi_submitter: Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Env


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: SCOPE


ncbi_country: China: Beijing

ncbi_organism_name: Segatella copri

ncbi_submitter: China CDC


ncbi_country: Mozambique

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG13438

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_submitter: FDA/CFSAN


ncbi_country: Bangladesh

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0998

ncbi_submitter: Broad Institute


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ochrobactrum sp. BD22

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: United Kingdom

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Japan

ncbi_organism_name: Endozoicomonas elysicola DSM 22380

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolate: Enterobacter muelleri JM-458T

ncbi_organism_name: Enterobacter asburiae

ncbi_strain_identifiers: Enterobacter muelleri JM-458T

ncbi_submitter: JUSTUS LIEBIG UNIVERSITY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: MAMI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 239


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Switzerland

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich, Vetsuisse Faculty


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_submitter: Weifang People's Hospital