ncbi_organism_name: Streptomyces luteogriseus


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.0 m chemocline layer of meromictic lake

ncbi_organism_name: bacterium

ncbi_submitter: Academia Sinica


gtdb_representative: f

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Nonlabens sp. SCSIO 43208

ncbi_strain_identifiers: SCSIO 43208

ncbi_submitter: South China Sea Institute of Oceanology,Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Nonlabens;x__unclassified Nonlabens;s__Nonlabens sp. SCSIO 43208


ncbi_assembly_level: Chromosome

ncbi_assembly_name: E coli IVRI_FBI_591

ncbi_submitter: Indian Veterinary Research Institute


ncbi_assembly_level: Scaffold

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Florida


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: bacterium UBP3_UBA3054

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP3_UBA3054


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D3_bin-0737

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Comamonas terrae

ncbi_strain_identifiers: TISTR 1906

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Denmark: Viborg

ncbi_isolation_source: activated sludge from Vibo_18-Q3-R45-57

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: bacterium HR23

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_organism_name: Pseudomonas sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Taibaiella sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


gtdb_type_species_of_genus: t

ncbi_organism_name: Postechiella marina

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Zurich


ncbi_country: USA: VA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Lentilactobacillus buchneri ATCC 11577

ncbi_submitter: Baylor College of Medicine


ncbi_country: Nigeria

ncbi_isolation_source: Clinical wounds

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Igbinedion University Okada


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Lactiplantibacillus sp.

ncbi_submitter: Colorado State University


ncbi_country: India: Jamshedpur

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National Institute of Science Education and Research


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: USA

ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus glucanolyticus

ncbi_submitter: Cornell University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: envrionmental

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanigen


ncbi_country: India: Chandigarh

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Qatar

ncbi_isolation_source: urine

ncbi_submitter: Qatar University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: Paraprevotella xylaniphila


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_country: Australia

ncbi_organism_name: Bordetella pertussis


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus pseudoporcinus

ncbi_submitter: UNIVERSITY OF CAMBRDGE


ncbi_country: China: Hangzhou; Zhejiang

ncbi_isolation_source: Abdominal infection

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: France: Normandy

ncbi_isolation_source: Stools

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: Oman

ncbi_submitter: Sultan Qaboos University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Methylobacter sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_country: Bangladesh

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospira sp.


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Department of Microbiology, Juntendo University Graduate School of Medicine


ncbi_organism_name: Oxalobacteraceae bacterium GrIS 1.18

ncbi_strain_identifiers: GrIS 1.18

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: Pus (wound)

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA SAZ_10

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: mastitis milk

ncbi_submitter: University of Zurich


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium RIFOXYD12_FULL_34_57


ncbi_organism_name: Solimonas flava DSM 18980

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Solimonas;s__Solimonas flava;x__Solimonas flava DSM 18980


ncbi_organism_name: Burkholderia sp. JPY366


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides salyersiae CL02T12C01

ncbi_submitter: Broad Institute


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: France: Dune du Perroquet; Bray-Dunes

ncbi_isolation_source: Floral nectar

ncbi_organism_name: Rosenbergiella epipactidis

ncbi_submitter: Complutense University of Madrid


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Pandoraea sp. NPDC087047

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Antarctica: Thala Hills oasis

ncbi_isolation_source: Middle part of the water column of temporary meltwater pond

ncbi_organism_name: Arthrobacter agilis

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Hospital Surface

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_organism_name: Pseudomonas sp. MH10

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_submitter: Kenya Medical Reserach Institute


ncbi_organism_name: Nitrobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_strain_identifiers: Khabarovsk

ncbi_submitter: Aix-Marseille Universite

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_country: India

ncbi_isolation_source: Vial cap

ncbi_organism_name: Burkholderia cenocepacia

ncbi_strain_identifiers: IPCU-B

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Vagococcus carniphilus

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: human stool

ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: PA

ncbi_isolation_source: rectum

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France

ncbi_organism_name: Borreliella valaisiana

ncbi_submitter: INRAe


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: UK Health Security Agency


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Syntrophomonas sp. UBA5246

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Electronema sp. TJ

ncbi_strain_identifiers: TJ

ncbi_submitter: Guangdong University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__Candidatus Electronema;x__unclassified Candidatus Electronema;s__Candidatus Electronema sp. TJ


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Neisseria sp. P0009.S008

ncbi_submitter: Rochester Institute of Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__environmental samples;s__uncultured Candidatus Obscuribacterales bacterium


ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing University of Chinese Medicine


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Exeter


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Undibacterium sp. TC9W

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Cupriavidus metallidurans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Flavobacteriaceae bacterium LMO-SS05

ncbi_submitter: Shanghai Jiao tong University


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: CDC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- YR2_bin-0950

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Korea: Incheon

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University College of medicine


ncbi_isolate: Brucella melitensis biovar 3

ncbi_isolation_source: Lymph node

ncbi_organism_name: Brucella melitensis

ncbi_strain_identifiers: Brucella melitensis biovar 3

ncbi_submitter: ANSES


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Trinidad and Tobago

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of the West Indies


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Streptomyces sp. NPDC086777


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Washington University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Infection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_country: France: APHM

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_organism_name: Clostridioides sp. ZZV15-6388

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_country: Brazil: Lauro de Freitas

ncbi_strain_identifiers: Fiocruz LV2953

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2953


ncbi_country: Cameroon: Northern Cameroon

ncbi_isolation_source: termite gut

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: CA; Bodega Marine lab

ncbi_organism_name: Vibrio sp. UCD-FRSSP16_30

ncbi_submitter: UC Davis


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5426

ncbi_submitter: University of Queensland


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Hamburg

ncbi_isolation_source: central venous catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_submitter: Contra Costa Public Health Laboratory submission group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Parapusillimonas granuli

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: India: Kolkata

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Turkey: Kayseri

ncbi_organism_name: Helicobacter turcicus

ncbi_submitter: Erciyes Univ. Faculty of Veterinary Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_isolation_source: lichen metagenome

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Luteimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: KEMRI


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: freshwater MAG --- Loc080925-6m_bin-1011

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_organism_name: Sphingobacterium tenebrionis

ncbi_submitter: Shandong University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: China: Hunan

ncbi_organism_name: Acinetobacter sp. YH16052

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient25 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_organism_name: uncultured Rheinheimera sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: AOP36_E1_surf _bin _18

ncbi_organism_name: Corynebacterium sp.

ncbi_strain_identifiers: AOP36_E1_surf _bin _18

ncbi_submitter: Genoscope


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: river water

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_country: Canada

ncbi_isolation_source: water

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Texas Tech University


ncbi_country: Denmark

ncbi_isolation_source: wound infection

ncbi_organism_name: Staphylococcus pseudintermedius E140

ncbi_submitter: University of Copenhagen


ncbi_country: China: HulunBuir; InnerMongolia

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_submitter: Northern Arizona University


ncbi_country: China

ncbi_isolation_source: powder lumps after spray drying

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Northeast Agricultural University


ncbi_assembly_name: Salmonella enterica CVM N50427 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Parasutterella secunda

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_isolation_source: tracheal pseudomembrane

ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Litorivivens sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Fangia hongkongensis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Citrobacter werkmanii

ncbi_strain_identifiers: SAS

ncbi_submitter: Northern Technical University


ncbi_organism_name: Longimicrobiaceae bacterium

ncbi_submitter: Monash University


ncbi_submitter: Yangzhou University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: freshwater MAG --- Loclat_bin-09911

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: uncultured Syntrophaceae bacterium


ncbi_submitter: CEITEC VETUNI


ncbi_assembly_name: PA

ncbi_organism_name: Paenibacillus amylolyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Streptomyces sp. NPDC051684

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Butyribacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Halomonas sp. N3-2A

ncbi_submitter: Memorial University of Newfoundland


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp P-3

ncbi_strain_identifiers: Hp P-3

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: NBRC 3971

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Copenhagen


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Candidatus Uabimicrobium amorphum

ncbi_submitter: Friedrich Schiller University Jena

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Uabimicrobiia;o__Candidatus Uabimicrobiales;f__Candidatus Uabimicrobiaceae;g__Candidatus Uabimicrobium;s__Candidatus Uabimicrobium amorphum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Uabimicrobiia;o__Candidatus Uabimicrobiales;f__Candidatus Uabimicrobiaceae;g__Candidatus Uabimicrobium;s__Candidatus Uabimicrobium amorphum


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Shewanella sp. 10N.286.52.B9

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG13353

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: China: lake Taihu

ncbi_isolation_source: cyanobacterial aggregates

ncbi_organism_name: Niveispirillum cyanobacteriorum

ncbi_submitter: Nanjing Institute of Geography and Limnology


ncbi_country: USA: Bethesda

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 645

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: India: Botanical Garden; Tamilnadu; Coimbatore

ncbi_isolation_source: Rhizoplane of neem seedlings

ncbi_organism_name: Microbacterium azadirachtae

ncbi_submitter: Austrian Institute of Technology


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Urine

ncbi_submitter: WTSI


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas euvesicatoria;sb__Xanthomonas euvesicatoria pv. citrumelonis;x__Xanthomonas euvesicatoria pv. citrumelo F1


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Atlantic Ocean

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: University of Vienna


ncbi_country: Finland

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Helsinki


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__candidate division WOR-1 bacterium RIFOXYB2_FULL_36_35


ncbi_country: USA: Bronx; NY

ncbi_isolation_source: tracheal aspirate

ncbi_submitter: JCVI


ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Brazil: Sertaozinho stream; Sertaozinho

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Hyphomonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_submitter: Graduate School of Life and Environmental Sciences, Osaka Prefecture University


ncbi_strain_identifiers: Gottschalk 2864

ncbi_submitter: The J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae;x__Streptococcus agalactiae str. Gottschalk 2864


ncbi_country: Ireland

ncbi_isolation_source: broiler caeca 2

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus sp. ESL0263

ncbi_submitter: University of Lausanne


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Nigeria

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_organism_name: Psychrobacter alimentarius

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_country: Norway: Narvik

ncbi_isolation_source: air vent water in a clinic

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: CDPHE SARS-CoV-2 submissions


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_country: USA: California

ncbi_submitter: Wayne State University


ncbi_organism_name: Proteus sp. G4378

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4378


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolate: AOP34_BR2_surf _bin _11

ncbi_organism_name: Halomonadaceae bacterium

ncbi_strain_identifiers: AOP34_BR2_surf _bin _11

ncbi_submitter: Genoscope


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Manhattan


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. FJAT-45505

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-45505


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: pond water/sludge

ncbi_organism_name: Pseudomonas sp. TKO30

ncbi_submitter: University of South Alabama


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Microbacterium sp. UBA4541

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site A deep

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: AZ

ncbi_submitter: FDA/CFSAN


ncbi_country: Spain: Castell de Castells (Alicante)

ncbi_isolation_source: petioles

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: XF-ACTORS


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: CAU


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Nebraska

ncbi_organism_name: Thermotoga maritima

ncbi_submitter: University of Nebraska, Lincoln


ncbi_country: Italy

ncbi_isolation_source: wild boar

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Kenya

ncbi_isolation_source: clinical

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Tateyamaria sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Jiangnan University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: HGAP 4

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: University of Hawaii


ncbi_organism_name: uncultured Rhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: Seawater


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Serratia sp. CY66905

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY66905


ncbi_country: USA: Virginia

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Thiomonas sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Basel


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WA

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Washington


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_71_22


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Thermosynechococcus sp. GLH333

ncbi_submitter: Academia Sinica


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Mucispirillum schaedleri


ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Iran: Babol

ncbi_organism_name: Xanthomonas sontii

ncbi_submitter: University of Exeter


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Levilactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_country: USA: Squaxin Island; Washington

ncbi_isolation_source: kelp blade surface swab

ncbi_organism_name: Ascidiaceihabitans sp.

ncbi_submitter: University of Washington-Seattle


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Inconstantimicrobium porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Norway

ncbi_isolation_source: Blood culture

ncbi_submitter: St. Olav University Hospital


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Arcanobacterium sp.


ncbi_organism_name: Escherichia coli KTE186

ncbi_submitter: Broad Institute


ncbi_assembly_name: IMG-taxon 2513237115 annotated assembly

ncbi_organism_name: Streptomyces sp. SceaMP-e96

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: Instituto Nacional de Salud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Rubricoccaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil: Belo Horizonte;Pampulha lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M25BS1

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 642044 8-1


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rhizomicrobium sp.


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Queensland


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: gut

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Biotechnology Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus pinihumi;x__Paenibacillus pinihumi DSM 23905 = JCM 16419


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Georgia

ncbi_organism_name: Pseudomonas capsici

ncbi_submitter: University of Georgia


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Estonia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__candidate division Kazan-3B-28;s__candidate division Kazan bacterium RIFCSPHIGHO2_01_FULL_49_10


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Singapore

ncbi_isolation_source: sediments

ncbi_organism_name: Methylophilaceae bacterium UBA5127


ncbi_isolation_source: shallow marine sediment

ncbi_organism_name: uncultured Carboxylicivirga sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: St. Louis

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Northwestern University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Erysipelothrix tonsillarum

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Anaerovibrio slackiae

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_organism_name: Henriciella sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Oxford


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Streptomyces novaecaesareae

ncbi_strain_identifiers: NRRL B-1267

ncbi_submitter: University of Illinois


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: India: Vellore

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: India: Mandakanahalli village; Bidar taluk and district; Karnataka

ncbi_isolation_source: Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Streptomyces sp. NPDC047973

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudobdellovibrionaceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured bacterium


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_organism_name: Alistipes shahii


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Copenhagen


ncbi_country: Japan

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Nagoya University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_country: USA: Michigan; Powell Township; Upper Pine Lake

ncbi_isolation_source: water

ncbi_organism_name: Caulobacter sp. HMWF009


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Hellea sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_country: China: Hangzhou

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Arizona

ncbi_isolation_source: Gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Tetragenococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Anaerotignum faecicola


ncbi_organism_name: Wenyingzhuangia sp.

ncbi_submitter: Yantai University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: JNTUH


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_submitter: University of Alberta


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_submitter: Agroadvance spa.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas fragariae (ex Marin et al. 2024)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia intermedia

ncbi_submitter: SC


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Queensland


ncbi_assembly_name: IMG-taxon 2521172536 annotated assembly

ncbi_organism_name: Pseudomonas sp. LAMO17WK12:I8

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Kocuria rosea

ncbi_strain_identifiers: MSL 359

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Pacificibacter sp.

ncbi_submitter: Yantai University


ncbi_country: Sweden: Vastra Gotaland; Gothenburg

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Streptomyces sp. NPDC049881

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Streptococcus lutetiensis


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ohio

ncbi_isolation_source: finger

ncbi_organism_name: Chromobacterium haemolyticum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Coremacera marginata


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteriovorax sp.

ncbi_submitter: EMG


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Drancourtella sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Syntrophomonas sp.


ncbi_country: Russia: Chelyabinsk

ncbi_isolation_source: patient

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Research Institute for Plague Control


ncbi_isolation_source: Colon


ncbi_country: USA

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Dubosiella newyorkensis


ncbi_country: Spain

ncbi_isolation_source: Farm

ncbi_submitter: ITACYL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Povalibacter uvarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: gut content

ncbi_organism_name: Streptococcus caecimuris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_country: USA: Houston; TX

ncbi_isolation_source: vagina

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Seattle University


ncbi_country: Denmark

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Africa

ncbi_isolation_source: Spinach

ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Pretoria


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Universiti Sains Malaysia


ncbi_country: Bangladesh: Mirzapur

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_isolate: pure strain

ncbi_strain_identifiers: pure strain

ncbi_submitter: dtu national food institute


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Pakistan: Lahore

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0018

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: uncultured Veillonella sp.


ncbi_country: Turkey

ncbi_isolation_source: traditional yogurt 8

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: TSGB 4241

ncbi_submitter: CENTRAL RESEARCH INSTITUTE OF FOOD AND FEED CONTROL


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacteroides fragilis


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 127 (4-7303629)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 127 (4-7303629)


ncbi_country: South Korea: Wanju-gun

ncbi_organism_name: Paenibacillus protaetiae

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: Dagebuell

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Technische Universitaet Dresden, Medical Faculty 'Carl Gustav Carus'


ncbi_country: Czech Republic

ncbi_isolation_source: clinical sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, Charles University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces uncialis


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Dysosmobacter sp.


ncbi_organism_name: Clostridioides sp. ZZV15-6597

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_submitter: Health Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: Acutalibacter muris


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 8

ncbi_organism_name: Chlorobiaceae bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Wayne State University


ncbi_country: Argentina: Lake Morenito

ncbi_isolation_source: freshwater

ncbi_organism_name: Cyanobium sp. Morenito 9A2

ncbi_strain_identifiers: Morenito 9A2

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_organism_name: Salmonella sp. SAL04187

ncbi_submitter: Zhejiang university


ncbi_country: USA: FL

ncbi_isolation_source: Beef Cattle

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Paenibacillus sp. ACRRY

ncbi_strain_identifiers: ACRRY

ncbi_submitter: NHGRI/NIH


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae DSM 30104 = JCM 1662 = NBRC 14940


ncbi_country: China: Guangzhou; Guangdong

ncbi_isolation_source: urine

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Agathobaculum faecis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Kallipyga massiliensis

ncbi_submitter: University of California, Davis


ncbi_country: Papua New Guinea: record deposited as Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei B03

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Chicago


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Holdemanella sp.

ncbi_submitter: DOE JGI


ncbi_assembly_name: Salmonella enterica CVM N43452 v1.0

ncbi_country: USA: CO

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas shirazica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Thermosynechococcus sp. WL17

ncbi_submitter: Academia Sinica


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medicine Greifswald


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Rhodoplanes azumiensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_country: Japan

ncbi_organism_name: Pectobacterium wasabiae CFBP 3304

ncbi_strain_identifiers: CFBP 3304

ncbi_submitter: Institute for integrative biology of the cell


ncbi_country: China: Anshun

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guizhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Aeriscardovia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Providencia sp. 1701011

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Prevotella denticola


ncbi_organism_name: Raphidiopsis curvata NIES-932

ncbi_submitter: Toyohashi University of Technology


ncbi_country: Turkey

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_isolation_source: Soil

ncbi_organism_name: Pseudomonas sp. 31 R 17

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__unclassified Pseudomonas;s__Pseudomonas sp. 31 R 17


ncbi_country: USA: North Carolina Horticultural crops research station Castle Hayne

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: INRA


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Research and Development Center


ncbi_country: Guyana

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. 2006007831


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: metagenome

ncbi_organism_name: Succinatimonas hippei

ncbi_submitter: addis ababa university


ncbi_country: Denmark: Esbjerg E

ncbi_isolation_source: activated sludge from EsbE_18-Q3-R3-47

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Bangladesh

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microbacterium lacticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 74 (4-1034782)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 74 (4-1034782)


ncbi_country: USA: WI

ncbi_submitter: NCTR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Rhabdochlamydia sp.

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Candidatus Rhabdochlamydiaceae;g__Candidatus Rhabdochlamydia;x__unclassified Candidatus Rhabdochlamydia;s__Candidatus Rhabdochlamydia sp.


ncbi_country: Slovakia

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: IXO

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Milan


ncbi_organism_name: Nocardia sp. NPDC004604

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chamaesiphon sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: academisch medisch centrum


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Washington

ncbi_isolation_source: stool

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Hyphomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: AB-Biotics SA


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Samoa

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Actinomyces bouchesdurhonensis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Orange; FL

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Northern Arizona University


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: feather collected from a local poultry farm

ncbi_organism_name: Bacillus subtilis S1-4

ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;x__Bacillus subtilis S1-4


ncbi_organism_name: Nitrospina sp. P1_D6

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: caecum

ncbi_organism_name: Caecibacteroides pullorum

ncbi_submitter: Masaryk University, Facultu of Science


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus warneri SG1

ncbi_submitter: BGI


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Marine research


ncbi_country: China: Jiangxi

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Clostridium botulinum


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas japonica

ncbi_strain_identifiers: TISTR 1526

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus hominis


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG432

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human skin

ncbi_submitter: NIH/NHGRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B057;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: South Korea: Anseong

ncbi_isolation_source: ginseng cultivating soil

ncbi_organism_name: Nostocoides sp. HKS02

ncbi_submitter: Hankyong National University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: University of Washington


ncbi_organism_name: Methylophilus sp. 1

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nitrotoga sp. CP45

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp. CP45


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: University of South Africa


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudorhodobacter sp.

ncbi_submitter: Delft University of Technology


ncbi_country: China

ncbi_organism_name: Thermus brockianus

ncbi_submitter: School of Life Science


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: China: Henan

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Streptomyces glomeratus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Trinidad and Tobago

ncbi_isolation_source: crude oil polluted soil

ncbi_organism_name: Chryseobacterium oranimense

ncbi_strain_identifiers: COTT

ncbi_submitter: The University of the West Indies


ncbi_country: France: Bretagne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: USA: New York City

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Bacteroides stercoris


ncbi_country: Australia: Newcastle

ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Arenicella sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Yinchuan Ningxia Province

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Ningxia University


ncbi_organism_name: bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Salmonella sp. NW159

ncbi_submitter: Sichuan University


ncbi_organism_name: Paenibacillus sp. SAF-068

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Brucella anthropi

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Weissella cibaria

ncbi_submitter: University of Chicago


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: CYLB 1019

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: uncultured Thiotrichaceae bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: USDA


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Walloon Agricultural Research Centre


ncbi_organism_name: Bradymonadaceae bacterium

ncbi_submitter: Diversite, Ecologie et Evolution Microbienne, Unite Ecologie Systematique et Evolution


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Yersinia pestis 164

ncbi_submitter: Beijing Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 164


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Bacteroides ovatus CL03T12C18

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY