ncbi_assembly_name: IMG-taxon 2651870320 annotated assembly

ncbi_organism_name: Faecalicatena contorta

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


gtdb_representative: f

ncbi_assembly_level: Contig

ncbi_organism_name: uncultured Flammeovirgaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Candidatus Arthromitus sp. SFB-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__unclassified Candidatus Neoarthromitus;s__Candidatus Arthromitus sp. SFB-1


ncbi_country: Canada: University of British Columbia Endowment Lands; Vancouver; BC

ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas vancouverensis

ncbi_submitter: University of British Columbia

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Scaffold

ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: urine from Africa

ncbi_strain_identifiers: SGSC 2242

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Paratyphi B str. SARA62


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Washington


ncbi_organism_name: Ascidiaceihabitans sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Final Effluent)

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Italy

ncbi_isolation_source: meat products 2

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Candidatus Scatomorpha merdipullorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha merdipullorum


ncbi_isolation_source: pre-operative anastomotic injury

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chicago


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Japan

ncbi_isolation_source: bile

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_country: France

ncbi_isolation_source: feces

ncbi_submitter: Anses


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: EMG


ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Streptomyces sp. NPDC088337

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Ecuador

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: UAEM


ncbi_country: Estonia: Tartu

ncbi_submitter: University of Tartu


ncbi_country: USA: TX

ncbi_isolation_source: feces parrot

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Escherichia coli O111:H2

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_strain_identifiers: P6 C A28

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_assembly_name: freshwater MAG --- MJ-2014-D4_bin-107

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Hangzhou

ncbi_isolation_source: manure

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: zhejiang university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevundimonas sp. UBA6550

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Yunnan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: Xiamen University


ncbi_assembly_name: De novo assembly of KCRI isolate R0003_315

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China

ncbi_organism_name: Microbacterium suaedae

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: YZYP 306

ncbi_submitter: Xinjiang Normal University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: Respiratory Medicine

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Guangzhou Medical University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Morocco

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_organism_name: Salmonella sp. SM-64

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Odoribacter sp.

ncbi_submitter: University of Vienna


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Trueperella pyogenes


ncbi_country: USA: Brevard; FL

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Northern Arizona University


ncbi_country: Italy

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Institute of Sciences of Food Production (ISPA)


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Ruthenibacterium sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolate: AOP36_A1_surf _bin _12

ncbi_organism_name: Ancrocorticia sp.

ncbi_strain_identifiers: AOP36_A1_surf _bin _12

ncbi_submitter: Genoscope


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oenococcus sicerae

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: Pseudomonas syringae pv. tagetis

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 7;x__Pseudomonas syringae pv. tagetis


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: University of East Anglia


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediments

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Ocean University of China - Yushan Campus


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Verrucomicrobia bacterium ADurb.Bin122

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium ADurb.Bin122


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Atopobiaceae bacterium SGI.236

ncbi_submitter: University of Manitoba


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Planktomarina temperata

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Haemophilus influenzae

ncbi_strain_identifiers: NTX

ncbi_submitter: Mississippi State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rectinema sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Brazil: Rio de Janeiro

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: USA: California

ncbi_isolation_source: environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Riverside; Ca

ncbi_isolation_source: gut

ncbi_organism_name: Apilactobacillus micheneri

ncbi_submitter: University of California, Riverside


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 311

ncbi_organism_name: Staphylococcus agnetis

ncbi_strain_identifiers: SNUC 5151

ncbi_submitter: University of Calgary


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Germany: North Rhine-Westphalia

ncbi_isolation_source: Rainbow trout

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: China

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Veterinary Research Institute


ncbi_organism_name: Bacillus safensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas gulae

ncbi_submitter: UC Davis


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Quzhou

ncbi_organism_name: Dickeya fangzhongdai

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Crocosphaera watsonii WH 0402

ncbi_submitter: UCSC


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Pseudomonas matsuisoli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics GmbH


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Clear Labs, Inc.


ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: Department of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University


ncbi_country: France

ncbi_isolation_source: patient with acute infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India

ncbi_submitter: SC


gtdb_type_species_of_genus: t

ncbi_country: Brazil

ncbi_isolation_source: water from a salt pit

ncbi_organism_name: Rubinisphaera brasiliensis DSM 5305

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_country: Germany: Hamburg

ncbi_organism_name: Nitrosomonas oligotropha

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Sutterella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: Pacific Ocean: Yellow Sea near Korea

ncbi_isolation_source: a marine solar saltern

ncbi_organism_name: Pseudidiomarina salinarum

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Germany: Freising

ncbi_isolation_source: feces

ncbi_organism_name: Holdemanella porci

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Escherichia coli EC4437

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Stenotrophomonas sp. SMYL20

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Parvimonas micra

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Canada: Aylmer; Quebec

ncbi_isolation_source: root nodule from soybean plant inoculated with root zone soil from Amphicarpa bracteata

ncbi_organism_name: Bradyrhizobium amphicarpaeae

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Newcastle

ncbi_organism_name: Collinsella sp.

ncbi_submitter: University of Queensland


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_assembly_name: freshwater MAG --- AM-2014-D6_bin-700

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bologna


ncbi_organism_name: Neisseria sicca DS1

ncbi_submitter: University of Maryland, College Park


ncbi_assembly_level: Chromosome

ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Pseudanabaena sp. M152S2SP2A07QC

ncbi_submitter: Universite de Montreal


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Tamil Nadu Agricultural University


ncbi_assembly_name: Version 1.0

ncbi_country: Turkey

ncbi_organism_name: Mycoplasma mycoides subsp. capri PG3

ncbi_submitter: EVOLMYCO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri;x__Mycoplasma mycoides subsp. capri PG3


ncbi_country: Russia: Sochi

ncbi_isolation_source: hot water systems

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Russian Research Anti-Plague Institute Microbe


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_organism_name: Cohnella cellulosilytica

ncbi_strain_identifiers: TISTR 1996

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Dialister sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA

ncbi_isolation_source: urine; cystoscopy

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of California, Berkeley


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Psychrobacter pacificensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Enterococcus innesii

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: AOP30_C2_surf _bin _5

ncbi_organism_name: Vibrio toranzoniae

ncbi_strain_identifiers: AOP30_C2_surf _bin _5

ncbi_submitter: Genoscope


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: Candidatus Merdousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;f__Intestinicryptomonaceae;g__Candidatus Merdousia;x__unclassified Candidatus Merdousia;s__Candidatus Merdousia sp.


ncbi_organism_name: Terriglobia bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Tokyo University of Agriculture and Technology (TUAT)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Escherichia coli

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Anaerococcus sp. WGS1596

ncbi_submitter: Amager and Hvidovre Hospital


ncbi_organism_name: Microbacterium sp. PMB16

ncbi_submitter: University of Plovdiv


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Beijing

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rickettsia typhi

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Ireland

ncbi_isolation_source: seafood factory FBO7

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_country: Greenland: Kangerlussuaq

ncbi_isolation_source: soil sample line 2 60 ft from anomalous acidified pond located near a glacio-fluvial outwash plain

ncbi_submitter: Indiana University Bloomington


ncbi_submitter: St. Jude Children's Research Hospital


ncbi_assembly_name: freshwater MAG --- A-2_bin-312

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D6_bin-639

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: China: Shandong

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Wuhan Institute of Virology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: South Africa

ncbi_isolation_source: skin of merluccius capensi

ncbi_organism_name: Photobacterium kishitanii

ncbi_strain_identifiers: DSMZ 2167

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptomyces sp. NPDC056853

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: FL

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: meat

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: China: Anhui

ncbi_isolation_source: Other specimens

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Anhui Medical University


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Prof. Bart Currie, Menzies School of Health Research


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Finland: University of Jyvaskyla

ncbi_isolation_source: experimental exposure to phage

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Weizmannia sp. CD-2023

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_isolation_source: diabetic foot ulcer sample 8

ncbi_organism_name: Corynebacterium sp. LK29

ncbi_submitter: UPenn


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mesomycoplasma hyopneumoniae 168-L

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: NORHED grant


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Pseudoalteromonas sp.

ncbi_submitter: Kiel University


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Petrotogaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Burkholderia thailandensis 2002721723

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Instituto de Quimica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: human skin

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: NIH/NHGRI


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Brevibacterium yomogidense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Laboratorios veterinarios Lasser


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: National Center of Infectious and Parasitic Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Konstanz


ncbi_country: Nepal: Himalayas; soil from near a hot spring

ncbi_isolation_source: alpine soil [ENVO:00005741]

ncbi_organism_name: Streptomyces sp. MBT97

ncbi_submitter: Institute of Biology, Leiden University


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Afipia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Treponema sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 1 d SRT; 55C; pH 5.0

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Ornithinimicrobium tianjinense


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Blastochloridaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_country: China: Xinjiang

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Australia: Brisbane

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affliated Hospital Zhejiang University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Colorado State University


ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_assembly_name: freshwater MAG --- MJ110927B_bin-332

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_assembly_name: Rumen uncultured genome RUG155

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas sp. ZS001

ncbi_submitter: Tianjin Recyclable Resources Institute, All China Federation of Supply and Marketing Cooperatives


ncbi_country: China: Jiangsu

ncbi_isolation_source: Probiotics

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Halobacillus hunanensis

ncbi_submitter: URMITE


ncbi_country: Kenya: Laikipia

ncbi_isolation_source: Camel

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Solwaraspora sp. WMMA2101

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Brazil: Petrolina

ncbi_isolation_source: Microcrustacean

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Cuba: San Jose de Las Lajas

ncbi_isolation_source: Rectal Swab

ncbi_submitter: University of Bern


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada: Ontario

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: Hospital sewage

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany

ncbi_isolation_source: Mastitis

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Clayoquot Sound; BC

ncbi_isolation_source: Ocean water

ncbi_organism_name: Stutzerimonas zhaodongensis

ncbi_submitter: University of Calgary


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Netherlands

ncbi_isolation_source: infant

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University College Cork


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;x__unclassified Balneolia;s__Balneolia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Erwinia sp. JUb26

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: Italy

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus WAMC6010

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agricultural University


ncbi_country: Indonesia

ncbi_isolation_source: frozen yellowfin tuna steak

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN001118


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: SulTherST

ncbi_country: China

ncbi_isolation_source: water sample from acid hot spring

ncbi_organism_name: Sulfobacillus thermosulfidooxidans ST

ncbi_strain_identifiers: strain ST

ncbi_submitter: Central South University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus thermosulfidooxidans;x__Sulfobacillus thermosulfidooxidans ST


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_assembly_name: freshwater MAG --- KR_bin-3261

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_assembly_name: IMG-taxon 2740891890 annotated assembly

ncbi_organism_name: Salinicoccus kekensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: MD

ncbi_isolation_source: food product

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Choleraesuis


ncbi_organism_name: uncultured Lachnotalea sp.


ncbi_country: Russia

ncbi_organism_name: Rathayibacter festucae DSM 15932

ncbi_submitter: University of Idaho


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Clostridiaceae bacterium AF10-41

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Chaska; MN

ncbi_isolation_source: cucumber fermentation

ncbi_organism_name: Pediococcus ethanolidurans

ncbi_submitter: USDA Agricultural Research Service


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Brazil: Bacia de Campos; RJ

ncbi_isolation_source: slop tank from an oil platform

ncbi_organism_name: Oceanidesulfovibrio indonesiensis

ncbi_submitter: Federal University of Viçosa


ncbi_organism_name: Flagellimonas flava

ncbi_submitter: Shantou University


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Helmholtz Centre for Infection Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Malaysia: Terengganu

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Malaya


ncbi_isolation_source: heart

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: Perirectal

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Oxford


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Saccharibacillus endophyticus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Streptomyces sp. BH034

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Reyranella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Zymomonas mobilis

ncbi_submitter: Teagasc


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Nitrospirales bacterium


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: uncultured Puniceicoccaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B308;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Soil of vegetable field

ncbi_organism_name: Virgisporangium ochraceum

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Malaysia

ncbi_isolation_source: water

ncbi_organism_name: Aquella oligotrophica

ncbi_submitter: University of Malaya


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SurvCARE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: USA: Texas

ncbi_isolation_source: clinical

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 41:z4,z23:-


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Stockholm University


ncbi_country: Spain

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodopirellula maiorica SM1

ncbi_submitter: Microbial Interactions in MArine Systems (MIMAS)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_48_9


ncbi_country: Portugal

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UFSC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Colombia

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-1478

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacterium psychrophilum


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Terribacillus saccharophilus

ncbi_submitter: Bielefeld University


ncbi_submitter: University of Bern


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: NIVIP


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Erwinia amylovora Ea356

ncbi_submitter: CeBiTec


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Pseudobdellovibrio sp.


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_organism_name: Streptomyces sp. NPDC058739

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: National university of Singapore


ncbi_country: Svalbard

ncbi_isolation_source: seawater

ncbi_organism_name: Psychrobacter sp. NG27

ncbi_submitter: Shandong University


ncbi_organism_name: Pediococcus acidilactici

ncbi_strain_identifiers: CDOD-Kg

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiotrichaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: Fishery products

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA

ncbi_isolation_source: seafood

ncbi_organism_name: Vibrio parahaemolyticus S098

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S098


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: Klebsiella michiganensis


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Leuconostoc citreum


ncbi_assembly_name: IMG-taxon 2528768219 annotated assembly

ncbi_organism_name: Paenibacillus barengoltzii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Fluoribacter dumoffii


ncbi_country: South Korea

ncbi_isolation_source: sea water

ncbi_organism_name: Qipengyuania sp. SS22

ncbi_submitter: Dongguk university


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Actinomyces oris

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Finland: Helsinki

ncbi_isolation_source: Gulf of Finland

ncbi_organism_name: Nodularia spumigena UHCC 0039

ncbi_strain_identifiers: UHCC 0039

ncbi_submitter: Universtiy of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nodulariaceae;g__Nodularia;s__Nodularia spumigena;x__Nodularia spumigena UHCC 0039


ncbi_organism_name: Clostridium botulinum A str. Hall

ncbi_strain_identifiers: Hall

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum A;x__Clostridium botulinum A str. Hall


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Department of Biosecurity PCL3


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_submitter: Helmholtz Centre for Infection Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_isolation_source: Water

ncbi_organism_name: Raoultella planticola


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: University of Melbourne


ncbi_country: Australia: WA; Ardath

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. AD1-1

ncbi_submitter: Curtin University


ncbi_assembly_name: IMG-taxon 2681813503 annotated assembly

ncbi_organism_name: Epilithonimonas pallida


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Capnocytophaga sp.


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_assembly_name: GS De Novo Assembly

ncbi_country: India: MS

ncbi_isolation_source: tannery waste water

ncbi_organism_name: Serratia marcescens EGD-HP20

ncbi_submitter: National Environmental Engineering Research Institute-CSIR


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P98P

ncbi_submitter: South China Agricultural University


ncbi_country: France

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Bacteroides ilei

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: seawater

ncbi_organism_name: Photobacterium sp. GB-56

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Bifidobacterium aquikefiri

ncbi_submitter: Teagasc


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Teesside University


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Aeromonas rivipollensis


ncbi_organism_name: Gardnerella greenwoodii

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Pseudolabrys sp.


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_submitter: Shenzhen University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_organism_name: Pseudomonadota bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: groundwater

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Queensland


ncbi_country: South Korea: Jeju

ncbi_isolation_source: larvae

ncbi_organism_name: Limnobaculum xujianqingii

ncbi_submitter: BioPS Co., Ltd.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Allomuricauda sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC069D04

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Clostridia bacterium


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_strain_identifiers: Xcv Sspep 92

ncbi_submitter: Ottawa Research and Development Center


ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_isolation_source: isolated from a bone infection

ncbi_organism_name: Acinetobacter baumannii AB4857

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Ancylobacter novellus


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil

ncbi_isolation_source: shoe cover farm worker

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Antarctica:King George Island; Fildes Peninsula

ncbi_organism_name: Novilysobacter antarcticus

ncbi_submitter: Ocean University of China


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Enterobacteriaceae bacterium


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: China: Anhui

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_submitter: University of Rennes


ncbi_assembly_name: Rumen uncultured genome RUG10062

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_organism_name: Ruegeria atlantica

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: United Kingdom

ncbi_isolation_source: Chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Propionibacterium sp. HGH0353


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Italy: Pisa

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sapienza University of Rome


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium AF02-42

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Canada: Alberta

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: Feedlot constructed wetland

ncbi_submitter: Government of Alberta


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: kimchi

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South Dakota State University


ncbi_country: China: Guangxi Province

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Pseudomonas sp. GX19020

ncbi_submitter: Guangxi University for Nationalities


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA:New York City

ncbi_isolation_source: New York City MTA subway

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Ireland

ncbi_isolation_source: skim milk powder (medium heat)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Teagasc Agriculture and Food Development Authority


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Sulfurovum sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: EMG


ncbi_country: Kazakhstan: Almaty; a town park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. AY2-1

ncbi_submitter: University of Bialystok

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. AY2-1


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Allobaculum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Kenya: Msambweni County

ncbi_isolation_source: infant stool

ncbi_organism_name: Bifidobacterium longum subsp. suis

ncbi_submitter: ETH Zurich


ncbi_isolation_source: Loam soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Bath


ncbi_country: USA: Northern California

ncbi_isolation_source: strawberry leaf tissue

ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: University of California at Davis


ncbi_country: USA: IL

ncbi_isolation_source: Swine

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM 21554


ncbi_organism_name: uncultured Puniceicoccaceae bacterium


ncbi_country: USA: MD

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: IMG-taxon 2600254933 annotated assembly

ncbi_organism_name: Rhizobium sp. NFR12

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: NYU Grossman School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Oxford


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: Rumen uncultured genome RUG13387

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Nevada, Reno


ncbi_organism_name: uncultured Myxococcia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;c__Myxococcia;x__environmental samples;s__uncultured Myxococcia bacterium


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Kyoto University


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. SKLX109520

ncbi_submitter: Zhejiang university


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: Microbacterium keratanolyticum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: China

ncbi_isolation_source: anaerobic digsetion effluent

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Collinsella tanakaei

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Geobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Cytobacillus horneckiae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Washington

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_country: Spain: Ebro Delta; Catalonia

ncbi_isolation_source: Mussels

ncbi_organism_name: Arcobacter ellisii

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Department of Laboratory Medicine


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Capnocytophaga sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: AAFC


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Dog Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC-RRC


ncbi_country: Australia

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of New South Wales


ncbi_organism_name: Amaricoccus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Gordonibacter pamelaeae

ncbi_submitter: University of Chicago


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_submitter: Swansea University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Megamonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG13

ncbi_submitter: Environmental Microbiology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Anderseniibacteriota;x__unclassified Candidatus Anderseniibacteriota;s__Candidatus Anderseniibacteriota bacterium


ncbi_organism_name: Tardiphaga sp. 768_D3_N2_1

ncbi_submitter: VIB


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: China: Chongqing

ncbi_isolation_source: intestinal content

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Southwest University


ncbi_country: USA: Oklahoma

ncbi_isolation_source: retail chicken

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Tulsa


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_isolation_source: soil

ncbi_organism_name: Acrocarpospora macrocephala

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Campylobacter porcelli

ncbi_submitter: Veterinary Faculty


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Emticicia agri

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 323

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: SNUC 2643

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Sulfurovum sp. UBA2215

ncbi_submitter: University of Queensland


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Prevotella histicola


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola coprocola


ncbi_country: Antarctica

ncbi_isolation_source: Cyanobacterial mat sample

ncbi_organism_name: Pseudomonas proteolytica

ncbi_strain_identifiers: CCUG 51515T

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: USA: Minnesota

ncbi_isolation_source: activated sludge

ncbi_organism_name: Aminobacter sp. MET-1

ncbi_submitter: Hamline University


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: McGill University


ncbi_country: China: Hangzhou

ncbi_isolation_source: bile

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agriculture University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Prochlorococcus sp. TMED223

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Brazil

ncbi_isolation_source: pecked egg

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: [Eubacterium] saphenum

ncbi_submitter: EMG


ncbi_organism_name: Mitsuokella multacida


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Colombia: Buenaventura

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Genomics Resource Center - University of Maryland


ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: 2nd Faculty of Medicine and Motol University Hospital


ncbi_country: China: Guangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ST11 CRKP20

ncbi_submitter: PLA Southern Theater General Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: China: Guangxi

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Flavivirga amylovorans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Staphylococcus epidermidis


ncbi_submitter: Center for Life Sciences, National Laboratory Astana, Nazarbayev University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0243

ncbi_submitter: Broad Institute


ncbi_country: China: Gansu province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pseudomonas sp. HN2

ncbi_submitter: Northwest Normal University


ncbi_country: Mexico: Baja California Sur; Santa Maria Bay

ncbi_isolation_source: soil

ncbi_organism_name: Ensifer aridi

ncbi_submitter: Dr. Antoine Le Quere


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus intermedius;x__Streptococcus intermedius SK54 = ATCC 27335


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0089


ncbi_country: Mozambique

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Portugal

ncbi_organism_name: Deinococcus murrayi DSM 11303

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Jiangxi

ncbi_submitter: State Key Laboratory for Infectious Disease Prevention and Control, and National Institute for Communicable Disease Control and Prevention, ChineseCenter for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A;x__Salmonella enterica subsp. enterica serovar Paratyphi A str. JX05-19


ncbi_country: USA

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillus kandeliae

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Canada: Val-d Or

ncbi_isolation_source: surface-sterilized gnotobiotic actinorhizal nodule; gnotobiotic speckled alder inoculated with white birch rhizosphere soil

ncbi_organism_name: Micrococcus sp. Mcc28

ncbi_submitter: Universite de Sherbrooke


ncbi_country: China: Sichuan

ncbi_submitter: Zhejiang University


ncbi_organism_name: Shewanella sp. MR-4


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan Agricultural University


ncbi_assembly_name: freshwater MAG --- Loc090519-8-7m_bin-0729

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Achromobacter denitrificans

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Centre International de Recherche en Infectiologie


ncbi_organism_name: Staphylococcus sp. LKG3-1

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sardar Patel University, V.V.Nagar


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Bartonella sp. AP7XZML

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Don State Technical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Salmonella sp. NW76

ncbi_submitter: Sichuan University