ncbi_organism_name: uncultured Candidatus Scalindua sp.

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;x__environmental samples;s__uncultured Candidatus Scalindua sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Arcobacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Enterococcus sp. DIV1217

ncbi_submitter: Broad Institute


ncbi_assembly_level: Contig

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Agroscope


gtdb_representative: t

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptomyces sp. NPDC048330

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Ki1-1-6m_bin-0741

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_assembly_name: Rumen uncultured genome RUG11490

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University


ncbi_country: China: Suzhou

ncbi_isolation_source: blood

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Arbuckle city on Colusa County

ncbi_isolation_source: Abscess

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: China

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_country: Viet Nam

ncbi_isolation_source: Radish pickled

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_submitter: Cepheid


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Casimicrobium huifangae

ncbi_submitter: Nanjing University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Korea Polar Research Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: Genoxor Medicial&Science Technology


ncbi_strain_identifiers: NCPPB 3739

ncbi_submitter: Università di Udine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae str. NCPPB 3739

ncbi_type_material_designation: assembly from pathotype material


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Thalassospira sp. MCCC 1A01148

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium CG22_combo_CG10-13_8_21_14_all_47_17


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: Caecum

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Korean adult feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Korea Food Research Institute


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of South Australia


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Xenorhabdus doucetiae

ncbi_submitter: Centro de Investigaciones y Transferencias, Universidad Nacional de Villa Maria (CIT-CONICET)


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Bristol


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-1447

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_assembly_name: MTMBA

ncbi_organism_name: Neomoorella thermoacetica

ncbi_strain_identifiers: MBA

ncbi_submitter: Georg-August-University Goettingen


ncbi_isolation_source: water column (SRF) surface water layer

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CENTRO DE INVESTIGACIONES EN BIOQUIMICA CLINICA E INMUNOLOGIA (CIBICI), CONICET, CORDOBA, ARGENTINA


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Vancouver

ncbi_isolation_source: air

ncbi_organism_name: Bacillus mobilis

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Myxococcaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Marcell Experimental Forest

ncbi_isolation_source: soil

ncbi_organism_name: Syntrophaceae bacterium UBA7544

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Louisville; KY

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Broad Institute


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University hospital Lubeck


ncbi_country: Uganda

ncbi_organism_name: Xanthomonas vasicola pv. musacearum

ncbi_strain_identifiers: NCPPB 4378

ncbi_submitter: University of Exeter


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: China: Suqian

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jiangsu Provincial Center for Disease Prevention and Control,China


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: well head water from oil reservoir

ncbi_organism_name: Petrotoga sp. HWH.PT.55.6.1

ncbi_submitter: University of Alberta


gtdb_type_species_of_genus: t

ncbi_country: Spain: Galicia; Corrubedo

ncbi_organism_name: Breoghania corrubedonensis

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Nanjing

ncbi_isolation_source: clinically healthy pig

ncbi_organism_name: Streptococcus suis


ncbi_country: USA

ncbi_isolation_source: Insect

ncbi_organism_name: Rickettsia endosymbiont of Stiretrus anchorago

ncbi_submitter: University of Liverpool


ncbi_organism_name: Caldibacillus thermoamylovorans

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Bacillus halotolerans

ncbi_strain_identifiers: RRC 101

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Gilvibacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Fusobacterium perfoetens

ncbi_submitter: Veterinary Research Institute


ncbi_country: South Korea

ncbi_isolation_source: waste water treatment system

ncbi_organism_name: Flavobacterium haoranii

ncbi_submitter: Kyungpook National University


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: the First Medicine Centre, Chinese PLA General Hospital


ncbi_organism_name: Shewanella loihica PV-4

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: Brazil

ncbi_organism_name: Chromobacterium piscinae

ncbi_submitter: NCAUR-ARS-USDA


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Aalborg University


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Pseudomonas caricapapayae

ncbi_strain_identifiers: ICMP 2855

ncbi_submitter: University of Toronto


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Streptomyces antibioticus


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Paludibacter sp.


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 0638

ncbi_submitter: The University of Queensland


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Clostridia bacterium UC5.1-2E3

ncbi_submitter: Laboratory of Metagenomics, Graduate School of Frontier Sciences, The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__unclassified Clostridia;s__Clostridia bacterium UC5.1-2E3


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Cyclobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_submitter: China agricultural university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: EMG


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Klebsiella sp. GB_Kp055

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_country: USA: WA

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Washington


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: freshwater MAG --- Day2-5_bin-108

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: cecal contents

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: Canada

ncbi_isolation_source: smoked salmon

ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: ATCC 9564

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Flagellimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 392869-1


ncbi_country: China: Guizhou; Jiuan

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. PDM18

ncbi_submitter: University of Chicago


ncbi_country: Burkina Faso

ncbi_isolation_source: Rice fields

ncbi_organism_name: Xanthomonas oryzae

ncbi_submitter: Colorado State University


ncbi_country: South Africa: Nkandla

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0013

ncbi_submitter: Broad Institute


ncbi_organism_name: [Clostridium] nexile

ncbi_submitter: EMG


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Niallia sp. FSL W8-0954

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Niallia;x__unclassified Niallia;s__Niallia sp. FSL W8-0954


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (1uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Institute of Water Research


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Liaoning

ncbi_isolation_source: Bronchoalvelar lavage (BAL)

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: zhejiang University


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Roseburia faecis

ncbi_submitter: Stanford University School of Medicine


ncbi_country: United Kingdom: London

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus sobrinus

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2642422588 annotated assembly

ncbi_organism_name: Eubacterium aggregans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: NY

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus DAR1955


ncbi_organism_name: Sandaracinaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: uncultured Sphingobacterium sp.


ncbi_organism_name: Arthrobacter sp. SIMBA_036

ncbi_submitter: SIMBA


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Aeribacillus pallidus

ncbi_submitter: Ludwig-Maximilians-University Munich


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Small intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Church and Dwight


ncbi_organism_name: Streptomyces kronopolitis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus CA-347

ncbi_submitter: TGen North


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Ireland

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnoclostridium sp.

ncbi_submitter: AAFC


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_assembly_level: Chromosome

ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsCore3_bin-1956

ncbi_isolation_source: freshwater sediment

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__environmental samples;s__uncultured candidate division Zixibacteria bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Peru: San Camilo; Ica

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium paxllaeri

ncbi_strain_identifiers: LMTR 21

ncbi_submitter: Universidad Nacional Agraria La Molina


ncbi_strain_identifiers: NNPa 2578

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: EMG


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: China:Hubei; Wuhan

ncbi_isolation_source: joint

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_isolation_source: faeces

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Quadram Bioscience Institute


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Clostridiaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Olsenella sp.


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__environmental samples;s__uncultured candidatus Brocadiaceae bacterium


ncbi_organism_name: Sphingomonas hankookensis

ncbi_submitter: The University of Sydney


ncbi_organism_name: Streptomyces jumonjinensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Cyanobium sp.


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS LIN-12

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS LIN-12

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Enterobacter cloacae subsp. dissolvens

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. dissolvens


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Virginia

ncbi_isolation_source: white-tailed deer feces

ncbi_organism_name: Pseudomonas sp. 5P_5.1_Bac1

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: EMG


ncbi_organism_name: Vibrio cholerae VL426

ncbi_submitter: Los Alamos National Laboratory (LANL), National Microbial Pathogen Data Resource (NMPDR)


ncbi_isolation_source: burned soil

ncbi_organism_name: Devosia sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Ares Genetics


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediments

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Ocean University of China - Yushan Campus


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces sp. NPDC002588


ncbi_organism_name: Streptococcus parasuis

ncbi_submitter: Kobe Institute of Health


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Finland: Lake Siikajarvi

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Polynucleobacter sp. UB-Siik-W21

ncbi_submitter: University of Innsbruck


ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Australia: Five Islands

ncbi_submitter: OUTBREAK


ncbi_organism_name: Mycoplasmopsis gallinarum DSM 19816

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- AM-sed-core1-D1_bin-387

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: IA

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Marine Biofilm

ncbi_organism_name: Leisingera sp. NJS204

ncbi_submitter: 2015 and 2016 Cold Spring Harbor Laboratory Course "Advanced Sequencing Technologies and Applications"


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: culture

ncbi_submitter: University of Zurich


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Celeribacter halophilus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Campylobacter sp. BCW_8709

ncbi_submitter: University of California at Davis


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VVEswe-S

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Serratia marcescens

ncbi_submitter: ICAR - Indian Agricultural Research Institute


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides caccae


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: terrestrial

ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Jacksoniibacteriota;s__Candidatus Jacksonbacteria bacterium RIFCSPHIGHO2_12_FULL_44_12


ncbi_country: USA: TX

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Las Cruces New Mexico; Memorial Medical Center

ncbi_isolation_source: Sputum

ncbi_organism_name: Staphylococcus aureus MM66

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Washington University School of Medicine


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: China: Hunan

ncbi_isolation_source: vagina of sow

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan

ncbi_isolation_source: transtracheal aspiration

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: EPFL


ncbi_country: Egypt

ncbi_isolation_source: Chest tube

ncbi_organism_name: Bacillus safensis

ncbi_submitter: JCVI


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Nitrospirae bacterium GWA2_42_11

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium GWA2_42_11


ncbi_organism_name: Rhodanobacter sp. FW106-PBR-LB-1-21

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_assembly_name: freshwater MAG --- Ja1_bin-3769

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: HKUST


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: IMG-taxon 2651870110 annotated assembly

ncbi_organism_name: Izhakiella capsodis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Oligoflexaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Raoultella planticola

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori HP250AFiV

ncbi_submitter: Washington University


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: Mesomycoplasma molare ATCC 27746


ncbi_organism_name: uncultured Saccharicrinis sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lysinibacillus fusiformis


ncbi_country: Poland: Bledowska Desert

ncbi_isolation_source: sand

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: University of Warsaw


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:83

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:83


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp. NPDC005774

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Aquiluna sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Aquiluna;x__environmental samples;s__uncultured Aquiluna sp.


ncbi_organism_name: Stenotrophomonas daejeonensis

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Veillonellaceae bacterium


ncbi_organism_name: Enterococcus sp. DIV0340

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-4476

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Bacillus sp. PM5

ncbi_submitter: Nanjing Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. PM5


ncbi_country: Switzerland: Geneva

ncbi_organism_name: Capnocytophaga canis

ncbi_submitter: Genomic Research Laboratory


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Siena


ncbi_organism_name: Psychroserpens sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: Argentina

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Fermentibacter sp.

ncbi_submitter: University of Gothenburg

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;x__unclassified Candidatus Fermentibacter;s__Candidatus Fermentibacter sp.


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: seawater

ncbi_organism_name: Rhodobacterales bacterium HKCCA1290

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United Kingdom Health Security Agency


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EBI


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA:Durham; North Carolina

ncbi_organism_name: Akkermansia massiliensis

ncbi_submitter: Duke University


ncbi_country: Mexico

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_country: Algeria: Ain Taya; Algiers

ncbi_isolation_source: Tap water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Pasteur Institute of Algeria


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: USA: MD

ncbi_isolation_source: Dietary Supplement

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: USFDA


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_country: Australia: Brisbane

ncbi_organism_name: Blautia obeum

ncbi_submitter: The University of Queensland


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter acinonychis

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: France

ncbi_isolation_source: male born April 1935

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 2008-988


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Omnitrophica WOR_2 bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: rat gut

ncbi_organism_name: Bacteroides sp. UBA7052

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces sp. NPDC094014

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Mediterranean Sea

ncbi_organism_name: Pelagibacteraceae bacterium TMED136

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Main Ward

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of KwaZulu Natal


ncbi_country: China: Zhejiang

ncbi_isolation_source: Bronchoscope

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Suzhou

ncbi_isolation_source: hospital wastewater

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Chelatococcus composti

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-b_bin-637

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_country: USA

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: University of Florida


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Methylococcus sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Maricaulis salignorans

ncbi_submitter: Biology Centre CAS


ncbi_country: Denmark: Mariagerfjord

ncbi_isolation_source: activated sludge from Mari_18-Q3-R65-66

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Victivallales bacterium


ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: Federal University of Minas Gerais


ncbi_country: Greece

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: bioMerieux


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Toho University


ncbi_country: USA: Kansas

ncbi_submitter: USDA-ARS-USMARC


ncbi_assembly_name: freshwater MAG --- Loc090907-8-6m_bin-405

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Brevibacillus agri


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Russia: Kuril Islands

ncbi_isolation_source: marine vent

ncbi_organism_name: Thermotoga sp. 2812B

ncbi_submitter: University of Alberta


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Acholeplasma sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of Copenhagen


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Singulisphaera sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Psychrobacter glacincola

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolate: AOP25_D2_surf _bin _10

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP25_D2_surf _bin _10

ncbi_submitter: Genoscope


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Malaysia: Johor

ncbi_isolation_source: slough from diabetec foot ulcer

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: Institute for medical research


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_isolation_source: factory soil

ncbi_organism_name: Castellaniella sp. S9

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Shanghai

ncbi_isolation_source: clinic

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Municipal ceter for disease control & prevention


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Megasphaera sp.


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Dongguan

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. L-S2809

ncbi_submitter: South China Agricultural University


ncbi_country: China: Shenzhen

ncbi_organism_name: Coprobacillus sp. AM23-2

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Aggregatilineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bournemouth University


ncbi_country: Czech Republic

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: RI; Narragansett Bay

ncbi_organism_name: Yoonia maritima

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Sphingopyxis sp. CCNWLW253

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_organism_name: Tidjanibacter massiliensis


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Conch Reef; Key Largo; Florida

ncbi_isolation_source: marine sponge

ncbi_organism_name: Streptomyces sp. XM83C

ncbi_submitter: Institute of Marine and Environmental Technology


ncbi_organism_name: bacterium


ncbi_country: Switzerland: Lullier

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Halomonas sp. KG2

ncbi_submitter: Iowa State University


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Roseitalea sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Paenibacillus massiliensis T7

ncbi_submitter: China Agricultural University


ncbi_organism_name: Xanthobacteraceae bacterium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Sulfitobacter sp. AS59

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_country: Portugal

ncbi_isolation_source: patient

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College and Hospital


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Serratia sp. SA070

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. SA070


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Italy

ncbi_isolation_source: swine manure

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Yersinia enterocolitica

ncbi_strain_identifiers: SM 16

ncbi_submitter: Sassari University


ncbi_organism_name: Eubacterium aggregans

ncbi_submitter: Sichuan University


ncbi_country: India

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Escherichia coli

ncbi_submitter: Northeast Forestry University


ncbi_country: Morocco

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: rat gut

ncbi_organism_name: Prevotella sp. UBA7197

ncbi_submitter: University of Queensland


ncbi_isolation_source: Gastrointestinal surgery

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Bryobacterales bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sewage

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Hubei

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Christian Medical College


ncbi_country: Japan:Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Bacillus sp. BML-BC051

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BML-BC051


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_12_FULL_40_12


ncbi_organism_name: Borreliella valaisiana

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;x__unclassified Candidatus Krumholzibacteriota;s__Candidatus Krumholzibacteriota bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_organism_name: Blautia caccae

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Purdue University


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides sp. AM58-2XD

ncbi_submitter: BGI


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Czech Republic: Smilov

ncbi_isolation_source: Insect

ncbi_organism_name: Rickettsia endosymbiont of Omalisus fontisbellaquei

ncbi_submitter: University of Liverpool


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 149 - depth 500m

ncbi_organism_name: Nocardioides sp. REDSEA-S33_B3

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Candidatus Leptofilum gracile

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Leptofilum;s__Candidatus Leptofilum gracile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Leptofilum;s__Candidatus Leptofilum gracile


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum


ncbi_country: Czech Republic: Praha

ncbi_submitter: University of Veterinary Sciences


ncbi_country: Canada: QC

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_organism_name: Uliginosibacterium paludis

ncbi_submitter: Seoul Womens' University


ncbi_country: Switzerland

ncbi_isolation_source: Swiss Alpine cheese

ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: University of Bern


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California San Diego


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thalassospira xiamenensis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Chryseobacterium cupriresistens

ncbi_submitter: Escuela Nacional de Ciencias Biologicas-IPN


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01393

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01393


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Chicago


ncbi_organism_name: Alistipes sp.

ncbi_submitter: China Agricultural University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Urethral

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong; weifang Prefecture; dajiawa town

ncbi_isolation_source: Soil cores containing cogon grass roots

ncbi_organism_name: Arthrobacter sp. D5-1

ncbi_submitter: Biology Institute of Shandong Academy of Sciences


ncbi_assembly_name: freshwater MAG --- MJ120620A_bin-353

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas antarctica

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Toe web space swab

ncbi_organism_name: Microbacterium enclense

ncbi_submitter: University of Wisconsin - Madison


ncbi_assembly_name: freshwater MAG --- T7-5_bin-041

ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University College Cork


ncbi_country: France: Normandy

ncbi_isolation_source: blood culture

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Escherichia sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M0685

ncbi_submitter: Broad Institute


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Tunisia

ncbi_isolation_source: seafood

ncbi_submitter: ANSES


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: Slovenia

ncbi_organism_name: Helicobacter colisuis

ncbi_submitter: Veterinary Faculty


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Candidatus Auribacter fodinae

ncbi_submitter: University of Southern California

ncbi_taxonomy: d__Bacteria;p__Candidatus Auribacterota;c__Candidatus Auribacteria;o__Candidatus Auribacterales;f__Candidatus Auribacteraceae;g__Candidatus Auribacter;s__Candidatus Auribacter fodinae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Auribacterota;c__Candidatus Auribacteria;o__Candidatus Auribacterales;f__Candidatus Auribacteraceae;g__Candidatus Auribacter;s__Candidatus Auribacter fodinae


ncbi_organism_name: Streptomyces althioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: SC


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Heilongjiang

ncbi_isolation_source: moss

ncbi_organism_name: Actinacidiphila bryophytorum

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: hyperthermophilic anaerobic system

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_submitter: Oita university


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium


ncbi_isolate: VPPXV

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: sourdough

ncbi_organism_name: Companilactobacillus paralimentarius

ncbi_submitter: Korea University


ncbi_isolation_source: ascites

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Vibrio sp. Vb2942

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Motiliproteus sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: rabbit liver

ncbi_submitter: Ludong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Klebsiella sp. 132108

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_assembly_name: Rhodanobacter sp. FW501-T8

ncbi_country: USA: Tennessee

ncbi_isolation_source: shallow subsurface groundwater

ncbi_organism_name: Rhodanobacter sp. FW106-PBR-LB-2-11

ncbi_submitter: Institute for Environmental Genomics, University of Oklahoma


ncbi_assembly_name: Rumen uncultured genome RUG13600

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_genome_representation: partial

ncbi_organism_name: Pseudomonas sp. abacavir_1

ncbi_submitter: South China Normal University


ncbi_isolation_source: Columbia River plume; salinty 25

ncbi_organism_name: Porticoccaceae bacterium UBA3436

ncbi_submitter: University of Queensland


ncbi_assembly_name: X. fastidiosa 32

ncbi_organism_name: Xylella fastidiosa 32

ncbi_submitter: Universidade de Mogi das Cruzes


ncbi_country: South Korea: Gyeonggi-Do

ncbi_isolation_source: soil

ncbi_organism_name: Novosphingobium flavum

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: Xanthomonas sp.


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_country: China: Yunnan

ncbi_isolation_source: hotspring

ncbi_organism_name: Bacillus sp. CGMCC 1.16541

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CGMCC 1.16541


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: pond water

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: National Chung Cheng University


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Iowa

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Streptococcus suis

ncbi_submitter: USDA-ARS


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut tissue

ncbi_organism_name: Gilliamella sp. ESL0254

ncbi_submitter: University of Lausanne


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: Shanghai Ocean University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_country: Canada

ncbi_organism_name: Yersinia pseudotuberculosis


ncbi_country: USA: Alachua

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Thailand: Khon Kean

ncbi_isolation_source: vagina

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: RCEID, Khon Kaen University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Veillonella ratti

ncbi_submitter: University of Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA

ncbi_isolation_source: diabetic foot ulcer sample 10

ncbi_organism_name: Corynebacterium sp. LK31

ncbi_submitter: UPenn


ncbi_organism_name: Candidatus Spongiisociaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: South Korea

ncbi_isolation_source: Soybean paste (Chonggugjang)

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Blautia intestinavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Sao Paulo State University-FCAVUnesp

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_assembly_name: Rumen uncultured genome RUG023

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolate: Patient #53

ncbi_isolation_source: Skin

ncbi_organism_name: Cutibacterium acnes

ncbi_strain_identifiers: Patient #53

ncbi_submitter: sapienza university


ncbi_organism_name: Pantoea sp. BS_4

ncbi_submitter: Banaras Hindu University


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada: Guelph

ncbi_isolation_source: Swine manure pit

ncbi_submitter: University of Guelph


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Emticicia soli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolate: SPRUCE 164

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_strain_identifiers: SPRUCE 164

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: UIUC


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Salmonella sp. SKLX109542

ncbi_submitter: Zhejiang university


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Subdoligranulum variabile

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli O121:H19 str. F6714

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O121:H19;x__Escherichia coli O121:H19 str. F6714


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Anaerococcus tetradius


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Haiti

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio cholerae


ncbi_organism_name: Anaeroplasmataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- MJ120924A_bin-470

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: China

ncbi_isolation_source: Geriatric medicine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Olsenella uli

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Cyanobacteria bacterium OH_CDB_20

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium OH_CDB_20


ncbi_organism_name: Pontibacter chitinilyticus

ncbi_submitter: Seoul Womens' University


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Labrys sp. 22185

ncbi_submitter: Yantai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Xanthobacteraceae;g__Labrys;x__unclassified Labrys (in: a-proteobacteria);s__Labrys sp. 22185


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T35615

ncbi_submitter: Broad Institute


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Planococcus sp. SK3692

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Planococcus;x__unclassified Planococcus (in: firmicutes);s__Planococcus sp. SK3692


ncbi_isolation_source: bone powder

ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: PCr

ncbi_submitter: National Insitute of Infectious Diseases


ncbi_organism_name: Streptomyces prasinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Pacific Ocean: Santa Monica Mounds

ncbi_isolation_source: sample #7086; 6-9 cm from methane seep sediment push core; sample PC51mix; 0-6 cm and 9-15 cm from methane seep sediment push core

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human oral metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: India: Vellore

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pseudogracilibacillus sp. SE30717A

ncbi_submitter: Philippine National Collection of Microorganisms


ncbi_country: USA: California

ncbi_isolation_source: rectal swab from healthy college student

ncbi_submitter: Santa Clara University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clavibacter nebraskensis NCPPB 2581

ncbi_strain_identifiers: NCPPB 2581

ncbi_submitter: Department of Microbiology, University of Bielefeld


ncbi_country: Germany

ncbi_submitter: California Department of Public Health


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Enterococcus sp. FR191

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_organism_name: uncultured Synergistaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_organism_name: uncultured Pelolinea sp.


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: Cystic fibrosis

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: University of Melbourne


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Colorado


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Peking University Cancer Hospital & Institute


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: pulp and paper samples

ncbi_organism_name: Micromonospora globosa

ncbi_strain_identifiers: NRRL B-2673

ncbi_submitter: University of Illinois


ncbi_organism_name: Turicimonas muris

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Staphylococcus sp. VBM19

ncbi_submitter: USDA-ARS


ncbi_assembly_name: freshwater MAG --- MJ120702A_bin-902

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Buchananbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Buchananiibacteriota;x__unclassified Candidatus Buchananbacteria;s__Candidatus Buchananbacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: Candidatus Fonsibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;x__unclassified Candidatus Fonsibacter;s__Candidatus Fonsibacter sp.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Morganella morganii

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: South Africa:Durban

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: INRA


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: yoghourt

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: NJ

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Priestia megaterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: National Institute of Ocean Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Center for Microbial Communities


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Manitoba


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterococcus casseliflavus


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia