ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: United Kingdom: London

ncbi_genome_representation: full

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_country: USA: Sammy Creek Landing; Sugarloaf Key; FL

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Gill tissue

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Ctena orbiculata


ncbi_assembly_level: Scaffold

ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany

ncbi_isolation_source: phyllosphere of grasses

ncbi_organism_name: Pseudomonas trivialis

ncbi_submitter: Ottawa Research and Development Center

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


gtdb_representative: t

ncbi_submitter: Quadram Institutte


ncbi_isolate: metabat2_XCR1_HOM_7853_bwa.118 MAG

ncbi_organism_name: Candidatus Lactobacillus pullistercoris

ncbi_strain_identifiers: metabat2_XCR1_HOM_7853_bwa.118 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Modernising Medical Microbiology


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_organism_name: uncultured Desulfosarcina sp.


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S4

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces sp. CA-250714

ncbi_submitter: Technical University of Denmark


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Curtobacterium sp. L1-20

ncbi_submitter: University of Georgia


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Auburn University


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: USDA-ARS-NCAUR


gtdb_type_species_of_genus: t

ncbi_country: Czech Republic

ncbi_organism_name: Budvicia aquatica DSM 5075 = ATCC 35567

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Budviciaceae;g__Budvicia;s__Budvicia aquatica;x__Budvicia aquatica DSM 5075 = ATCC 35567


ncbi_isolation_source: gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Fervidibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;x__unclassified Candidatus Fervidibacter;s__Candidatus Fervidibacter sp.


ncbi_country: Mongolia: Zamyn-Ude

ncbi_organism_name: Yersinia pestis

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing , China


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_country: Svalbard: Kongsfjorden

ncbi_isolation_source: sediment core

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Vienna


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: new MAG-134

ncbi_organism_name: Mesorhizobium sp.

ncbi_strain_identifiers: new MAG-134

ncbi_submitter: Micoorganism


ncbi_country: China: Jiangxi province

ncbi_isolation_source: nasopharyngeal swabs

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: GNS Science


ncbi_country: Germany: South-West Germany

ncbi_isolation_source: water

ncbi_organism_name: Atopobium sp. UBA2090


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter rudis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Kunming

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_submitter: Chongqing Medical University


ncbi_country: Kazakhstan: Zhambyl

ncbi_isolation_source: suspension

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: EMG


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Switzerland

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_country: China: Shandong

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: ZW

ncbi_submitter: liaocheng university


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: J.Craig Venter Institute


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Rhodospirillaceae bacterium


ncbi_organism_name: Anaerovoracaceae bacterium


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Lower gallery with a lake; water-sediments interface (waterfront)

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Roseburia intestinalis


ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Puniceicoccaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kluyvera intermedia


ncbi_country: Canada: Quebec

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Government of Canada


ncbi_country: Burma

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroidota Order II. bacterium

ncbi_taxonomy: d__Bacteria;p__Bacteroidota;c__;o__unclassified Bacteroidota Order II.;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;o__unclassified Bacteroidota Order II.;s__Bacteroidota Order II. bacterium


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Haixi City; Qinghai Province

ncbi_isolation_source: animal feces

ncbi_organism_name: Paraliobacillus sp. X-1268

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: lung

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Shanghai

ncbi_isolation_source: Chicken gizzard

ncbi_organism_name: Campylobacter coli

ncbi_submitter: China CDC


ncbi_country: Viet Nam: Son La

ncbi_isolation_source: fermented lap xuong sausage

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi


ncbi_organism_name: Limnobacter sp.

ncbi_submitter: Xiamen University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Brigham & Women's Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Micromonospora sp. NPDC047644

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Aliamphritea spongicola

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_country: China: Chongqing

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: China: Yunnan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Plant tissue

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: ESALQ/USP


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Ecole Centrale de Lyon

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Universite catholique de Louvain


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B239;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Streptomyces sp. NPDC087539

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_submitter: Tarim University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha stercorigallinarum


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolate: SPRUCE 38

ncbi_organism_name: Candidatus Cybelea sp.

ncbi_strain_identifiers: SPRUCE 38

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Wolbachia endosymbiont of Kerria lacca

ncbi_refseq_category: reference genome

ncbi_submitter: Indian Institute of Science


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Vibrio sp. D3

ncbi_submitter: Ocean University of China


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Salmonella sp. NW382

ncbi_submitter: Sichuan University


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Antarctica

ncbi_isolation_source: Antarctica soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: University of New South Wales


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Paenarthrobacter sp.

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU035

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_country: Norway

ncbi_isolation_source: Human

ncbi_organism_name: Brucella melitensis

ncbi_submitter: NORWEGIAN INSTITUTE OF PUBLIC HEALTH


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Streptosporangium canum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: USA: Michigan; Powell Township; Upper Pine Lake

ncbi_isolation_source: water

ncbi_organism_name: Caulobacter sp. HMWF025

ncbi_submitter: University of Illinois


ncbi_country: China

ncbi_isolation_source: Dalong Manganese Mine

ncbi_organism_name: Cumulibacter manganitolerans

ncbi_submitter: Nanjng Agricultural University


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Caulobacter sp. Root487D2Y

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Nanjing

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bythopirellula sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: Anaeroplasmataceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Escherichia coli

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: USA: Kentucky

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The University of Queensland


ncbi_submitter: German Federation for Biological Data


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomultivorans

ncbi_submitter: Northern Arizona University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: pig gut metagenome


ncbi_country: USA: MidWest; broiler breeder farm 9

ncbi_isolation_source: Environmental bootie

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M32679

ncbi_submitter: Broad Institute


ncbi_country: South Korea: Cheongwon

ncbi_isolation_source: rice rhizosphere soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: NCAUR-ARS-USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_submitter: Huzhou cdc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Stutzerimonas stutzeri NF13

ncbi_submitter: University of Balearic Islands

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;x__Stutzerimonas stutzeri group;x__Stutzerimonas stutzeri subgroup;s__Stutzerimonas stutzeri;x__Stutzerimonas stutzeri NF13


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 71a

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Alistipes finegoldii


ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 81-176;x__Campylobacter jejuni subsp. jejuni 81-176-DRH212


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: seawater surrounding coral Acropora digitifera under thermal stress

ncbi_organism_name: Phaeodactylibacter sp.

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_country: Germany: Hamburg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus sp. ESL0261

ncbi_submitter: University of Lausanne


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Faecalicatena orotica

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Serbia

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Ancylobacter dichloromethanicus

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01454

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01454


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Faecalimonas sp.


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Winogradskyella sp.

ncbi_submitter: marine college, shandong university


ncbi_country: New Zealand

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: uncultured Veillonella sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: UIUC


ncbi_country: Canada: Lods Research Centre of McGill University Macdonald Campus; Ste-Anne-de-Bellevue; Quebec

ncbi_isolation_source: Agricultural rhizospheric soil

ncbi_organism_name: Pseudomonas entomophila

ncbi_submitter: McGill University


ncbi_assembly_name: IMG-taxon 2593339254 annotated assembly

ncbi_organism_name: Butyrivibrio sp. INlla18

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Labilithrix sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Portugal: Porto

ncbi_isolation_source: supermaket trout

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S092_02753

ncbi_submitter: Zhejiang University


ncbi_country: Nigeria

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Russia: Borehole near Beyelii Yar in Tomsk

ncbi_isolation_source: groundwater filtered on 0.22 m filters

ncbi_organism_name: Anaerolinea sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: Spain: off the coast of Alicante

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: water

ncbi_organism_name: Comamonas aquatica

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces nigrescens

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Asticcacaulis solisilvae

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptomyces albogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: KT

ncbi_submitter: BRAC University


ncbi_organism_name: Bacillus sp. II_CA

ncbi_submitter: Universidade Federal do Rio de Janeiro (UFRJ)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. II_CA


ncbi_organism_name: Salmonella sp. NW574

ncbi_submitter: Sichuan University


ncbi_organism_name: Clostridium sp.


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:94

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:94


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Scalindua sp.

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;x__unclassified Candidatus Scalindua;s__Candidatus Scalindua sp.


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Lodz University of Technology


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Xylanibacter rodentium


ncbi_organism_name: uncultured Rickettsiaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Turkey: Mersin

ncbi_isolation_source: Greenhouse

ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: University of Toronto Mississauga


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Panama: Bocas del Toro

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: University of California, Davis


ncbi_country: Finland: Laukaa

ncbi_isolation_source: Water sample

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: EMG


ncbi_country: China: Yunnan

ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: Yunnan Agricultural University, China


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Zurich


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Brevibacterium pityocampae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Ukraine: Kyiv

ncbi_isolation_source: Rhizosphere of wheat

ncbi_organism_name: Cupriavidus taiwanensis

ncbi_submitter: University of Southern Mississippi


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus MSSA-93

ncbi_submitter: Broad Institute


ncbi_country: USA: MD

ncbi_organism_name: Bacillus tropicus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Escherichia coli O111:H11 str. CVM9455

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:H11;x__Escherichia coli O111:H11 str. CVM9455


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France

ncbi_isolation_source: Plant rhizosphere soil

ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum of adult bronchiectasis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Brucella abortus bv. 1 str. NI021

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus bv. 1;x__Brucella abortus bv. 1 str. NI021


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Tang lab


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EBI


ncbi_country: Spain

ncbi_submitter: Hospital 12 de Octubre


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: EMG


ncbi_isolate: metabat2_coassembly_bwa.559 MAG

ncbi_organism_name: Bacteroides ovatus

ncbi_strain_identifiers: metabat2_coassembly_bwa.559 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11355

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Dabao Village; Wuxi; Chongqing

ncbi_isolation_source: Potato rhizosphere; Soil

ncbi_organism_name: Streptomyces sp. A2-16

ncbi_submitter: Chongqing University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Salmonella sp. YP105-1

ncbi_submitter: Yangzhou University


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: DaiHai Lake

ncbi_organism_name: Mongoliitalea daihaiensis

ncbi_submitter: Inner mongolia normal university


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Fiji

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Germany: Bayreuth

ncbi_isolation_source: nephridia

ncbi_organism_name: Verminephrobacter eiseniae

ncbi_submitter: Aarhus University


ncbi_organism_name: Paenibacillus sp. FSL M7-1046

ncbi_submitter: Penn State


ncbi_organism_name: Kitasatospora sp. NPDC086791

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum ferrooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Longilinea sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Ruminococcaceae bacterium UBA2656

ncbi_submitter: University of Queensland


ncbi_assembly_level: Chromosome

ncbi_organism_name: Chthonomonas calidirosea T49

ncbi_submitter: GNS


ncbi_country: USA: Houston; Texas

ncbi_organism_name: Chromobacterium haemolyticum DSM 19808

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India

ncbi_organism_name: Xanthomonas campestris pv. clerodendri

ncbi_strain_identifiers: NCPPB 575

ncbi_submitter: University of Exeter


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Fimbriimonadales bacterium


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alistipes ihumii


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Nocardiopsis protaetiae

ncbi_submitter: Northeast Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_name: PAIRED

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MASINDE MULIRO UNIVERSITY OF SCIENCE AND TECHNOLOGY


ncbi_organism_name: Escherichia coli

ncbi_submitter: Southwest Minzu University


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Bigelow Laboratory For Ocean Sciences


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Ornithinimicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Univerza v Ljubljani, Biotehniska fakulteta


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_submitter: University of Bologna


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas at Austin


ncbi_assembly_name: Rumen uncultured genome RUG13721

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Bifidobacterium merycicum

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Bern


ncbi_isolation_source: antimony mine

ncbi_organism_name: Stenotrophomonas sp. As-5

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Canada: Ontario

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_assembly_name: freshwater MAG --- KT_bin-2079

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Xinjiang

ncbi_isolation_source: crude oil

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: NANKAI UNIVERSITY


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: South China Normal University


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Stockholm University


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Croceibacterium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF15-31

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: China-Japan Friendship Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW458-11-26-14-LB4

ncbi_submitter: Arkin Lab


ncbi_country: Japan: Makino; Shiga Prefecture

ncbi_organism_name: Pseudomonas savastanoi

ncbi_strain_identifiers: ICMP 9421

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi


ncbi_organism_name: Shewanella baltica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Caldisericum exile

ncbi_submitter: University of Duisburg Essen


ncbi_country: China: Heilongjiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0760

ncbi_submitter: Broad Institute


ncbi_isolation_source: Feces

ncbi_submitter: academisch medisch centrum


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: nasopharyngeal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: Bangladesh Council of Scientific and Industrial Research (BCSIR)


ncbi_organism_name: Anatilimnocola sp. NA78

ncbi_submitter: Friedrich Schiller University Jena


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: China: Hangzhou

ncbi_isolation_source: anal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W82238


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: Sediment

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UOL


ncbi_organism_name: Lactobacillus delbrueckii


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Agharkar Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: peritoneal abcess

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Germany

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Anaeroglobus geminatus

ncbi_submitter: EMG


ncbi_country: USA: California

ncbi_isolation_source: environmental

ncbi_organism_name: Mesorhizobium sp. C374B

ncbi_submitter: Washington State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Streptomyces sp. NPDC012972

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Frankia sp. Cas4

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_strain_identifiers: LSS

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Department of Microbiology, Tokyo Metropolitan Institute of Public Health


ncbi_organism_name: Smithella sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: University of Chicago


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Bacteroides ovatus


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_organism_name: Balneola sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: seawater

ncbi_submitter: Ocean university of China


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: chicken caecal content


ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Colicola faecequi

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Candidatus Colicola;s__Candidatus Colicola faecequi


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Staphylococcus lugdunensis VCU150

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Halanaerobium congolense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-8069

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2687453692 annotated assembly

ncbi_organism_name: Variovorax sp. CF079

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Zhejiang university


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Belgium

ncbi_organism_name: Fulvimonas soli


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Novacetimonas hansenii

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Thermoflexus sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Virgibacillus sp. DJP39

ncbi_submitter: University of Tennessee - Knoxville


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV185

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: stool specimen from a Guillain-Barre syndrome patient

ncbi_organism_name: Campylobacter jejuni HB-CJGB-QYT

ncbi_strain_identifiers: HB-CJGB-QYT

ncbi_submitter: State Key Laboratory for Infectious Disease Prevention and Control, and National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: WASHINGTON UNIVERSITY IN ST. LOUIS


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC050703

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Agathobacter rectalis ATCC 33656

ncbi_submitter: Center for Genome Sciences, Washington University School of Medicine


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: Intraabdominal infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Russia

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces orinoci

ncbi_strain_identifiers: NRRL B-3379

ncbi_submitter: University of Leeds


ncbi_organism_name: Ardenticatenaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_assembly_name: IMG-taxon 2675903158 annotated assembly

ncbi_organism_name: Jannaschia seohaensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_country: Argentina

ncbi_isolation_source: abdominal fluid

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes


ncbi_country: South Korea: Chonnam; Shinan

ncbi_isolation_source: Bigeum island farming field soil

ncbi_organism_name: Segeticoccus rhizosphaerae

ncbi_submitter: Institute of Microbial Ecology and Resources


ncbi_organism_name: Sphingobium fuliginis

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alphaproteobacteria bacterium UBA6615

ncbi_submitter: University of Queensland


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AF20-13LB

ncbi_submitter: BGI


ncbi_organism_name: Allosphingosinicella sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 44467_8

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Russia:Moscow Region

ncbi_isolation_source: Ready-to-cook beef cutlets

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0519

ncbi_submitter: Broad Institute


ncbi_country: Spain

ncbi_isolation_source: Hospital Univeristario de Bellvitge (Barcelona)

ncbi_submitter: Centro Nacional de Análisis Genómico


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Verrucomicrobia subdivision 6;s__Verrucomicrobia subdivision 6 bacterium UBA3008


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-I20

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Lund University


ncbi_country: Ireland

ncbi_submitter: University of Galway


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Micrococcaceae bacterium UBA6021

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__environmental samples;s__uncultured Candidatus Competibacteraceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Enterococcus sp.

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Bradyrhizobium sp. HKCCYLRH3095

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Stenotrophomonas sp. T8

ncbi_submitter: James Madison Univeristy


ncbi_organism_name: Pseudomonas sp. MAHUQ-62

ncbi_submitter: Gachon University


ncbi_organism_name: Luteococcus peritonei

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Anaerococcus vaginalis

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: anaerobic digester filtrate obtained from the belt filter press of the CVWRF wastewater treatment plant

ncbi_organism_name: Planctomycetes bacterium UTPLA1

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium UTPLA1


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: University of East Anglia


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: Faeces


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Geopsychrobacter electrodiphilus DSM 16401

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D7_bin-475

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Cronobacter dublinensis subsp. dublinensis

ncbi_submitter: University of Wyoming


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Washington


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_isolation_source: lobster sauces

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: CNGB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Tanzania

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Muhimbili University of Health and Allied Sciences


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Methylocella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Stockholm University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Research Institute for Tropical Medicine


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Italy

ncbi_isolation_source: rectal swab

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Greece: Crete

ncbi_isolation_source: amberjack juveniles

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USFDA


ncbi_country: USA: CA

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: CDC


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Duke University


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China

ncbi_isolation_source: pork dumplings

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.


ncbi_country: Australia: Clermont; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Streptomyces tauricus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Victoria

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Paraglaciecola sp.

ncbi_submitter: University of Bristol


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Brachybacterium sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Philadelphia

ncbi_isolation_source: retail chicken skin

ncbi_organism_name: Escherichia coli

ncbi_submitter: United States Department of Agriculture


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sour milk

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: USA

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Minnesota


ncbi_isolation_source: blood

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Arsenophonus nasoniae

ncbi_submitter: University of Liverpool


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Moritella dasanensis


ncbi_organism_name: uncultured Flavobacteriales bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Chlorobaculum sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Vienna


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Thermoguttaceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_submitter: Georgia Institute of Technology


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1955

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: Xiamen University


ncbi_country: United Kingdom

ncbi_organism_name: Brucella melitensis UK29/05


ncbi_isolation_source: Lung

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Kunshan; Jiangsu Province

ncbi_isolation_source: wastewater-treatment facility

ncbi_organism_name: Tahibacter caeni

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Wyoming


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: China: Fujian

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Chongqing Medical and Pharmaceutical College


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Animal Quarantine Service, MAFF

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Clostridia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13546

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Viet Nam

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Faculty of Fisheries, Kasetsart University


ncbi_isolation_source: droppings

ncbi_organism_name: Gephyromycinifex aptenodytis

ncbi_submitter: Zhejiang Ocean University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Canada: Alberta

ncbi_organism_name: Gallionella sp.

ncbi_submitter: University of Calgary


ncbi_country: Australia: Queensland

ncbi_isolation_source: Layer chicken liver; farm

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_country: USA: California; Los Angeles County

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Fructobacillus fructosus KCTC 3544

ncbi_strain_identifiers: KCTC 3544

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: China: Hangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: CAU


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Muenster


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Saint Louis; MO

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Washington University in St. Louis


ncbi_country: Spain: Leon

ncbi_isolation_source: food-contact surface

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Microbiome Applications for Sustainable food systems through Technologies and EnteRprise


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Canada: Syncrude; Ft. McMurray; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Sulfurovum sp. UBA5622

ncbi_submitter: University of Queensland


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 951631

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Acinetobacter radioresistens


ncbi_country: China: Shenzhen

ncbi_submitter: BGI


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_organism_name: Actinoplanes sp. NPDC049598


ncbi_country: Switzerland

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Nitrospira sp.


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Bartonella henselae

ncbi_submitter: Ghent University


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Utrecht University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: Italy

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Butyrivibrio fibrisolvens


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Pseudomonadota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Cypionkella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Salinisphaerales bacterium


ncbi_organism_name: Longimicrobiales bacterium


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Turicibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Enterobacter mori

ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Terasakiella sp.


ncbi_organism_name: Nitrospira sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Actinacidiphila glaucinigra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-4790

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_country: Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Porphyromonas gingivalis

ncbi_strain_identifiers: KCOM 2803

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_organism_name: Christensenellales bacterium


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_submitter: Research Center of Biotechnology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Cambridge; Massachusetts

ncbi_organism_name: Campylobacter sp. MIT 21-1684

ncbi_submitter: MIT


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Blautia obeum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France: Paris

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM


ncbi_country: Canada:Athabasca Oil Sands

ncbi_isolation_source: waste water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium UBA2259


ncbi_organism_name: Bacteroides salyersiae


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Brisbane

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: The University of Queensland


ncbi_country: Denmark

ncbi_isolation_source: Bacteremia

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Department of Molecular Medicine (MOMA) - Aarhus University Hospital


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: PA

ncbi_isolation_source: abscess

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00324


ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_country: South Africa: Ngwelezane

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0070

ncbi_submitter: Broad Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: New Zealand

ncbi_isolation_source: Post-mortem infection swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Massey University