ncbi_submitter: China-Japan Friendship Hospital


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Peru: Oxygen minimum zone

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: marine sediment

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Kiel University


gtdb_representative: t

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Belgium

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_assembly_level: Complete Genome

ncbi_country: Poland: North-East

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Medical University of Bialystok


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: India: Nagpur

ncbi_isolation_source: sludge from phenol fed wastewater aerobic bioreactor

ncbi_organism_name: Xanthobacter autotrophicus

ncbi_submitter: CSIR-National Environmental Engineering Research Institute


ncbi_assembly_level: Scaffold

ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas sp. Hg7Tf

ncbi_submitter: University of Agriculture in Krakow


ncbi_organism_name: Intestinimonas butyriciproducens


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: HRSE 28

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France: Besancon

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Chthoniobacter sp.

ncbi_submitter: EPFL


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bifidobacterium asteroides


ncbi_country: Germany

ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: China Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Thermoflexus sp.

ncbi_submitter: Montana State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Lacrimispora saccharolytica

ncbi_submitter: Veterinary Research Institute


ncbi_assembly_name: IMG-taxon 2634166628 annotated assembly

ncbi_organism_name: Actinopolyspora saharensis

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


gtdb_type_species_of_genus: t

ncbi_organism_name: Aurantimonas coralicida DSM 14790

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces sp. NPDC052002

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France: Normandy

ncbi_isolation_source: blood culture

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Blood

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Oxford


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA3498

ncbi_submitter: University of Queensland


ncbi_assembly_name: Acinetobater Genome Assembly

ncbi_country: India: Lahaul and Spiti district of Himachal Pradesh

ncbi_isolation_source: soil sample of Mane area of cold desert

ncbi_organism_name: Acinetobacter sp. MN12

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology, Palampur and Central Arid Zone Research Institute, Jodhpur


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine

ncbi_organism_name: Alcanivorax sp.


ncbi_organism_name: Serratia marcescens PH1a

ncbi_submitter: University of Malaya


ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Serratia sp. FDAARGOS_506

ncbi_submitter: US Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. FDAARGOS_506


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Chromosome

ncbi_country: Finland

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Canada: Alberta

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Immundisolibacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: Hangzhou

ncbi_isolation_source: pus

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospiraceae bacterium UBA3568


ncbi_country: USA: Ennis; MT

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: EMG


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Stomatobaculum longum


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Genomics


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Sutterella seckii


ncbi_isolation_source: Colon

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: New Zealand: North Canterbury; Ashley River Estuary

ncbi_submitter: University of Canterbury


ncbi_organism_name: Campylobacter molothri

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Barnesiella sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_submitter: Stavanger University Hospital


ncbi_country: China

ncbi_isolation_source: patient

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Tamazula River; Las Peitas

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: USA: Minnesota

ncbi_isolation_source: chicken barn

ncbi_submitter: University of Saskatchewan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Thermotogaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Guangdong

ncbi_isolation_source: soil

ncbi_organism_name: Dyella mobilis

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_country: USA: Arizona State University; Tempe Campus

ncbi_isolation_source: honeybee gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_country: Germany

ncbi_organism_name: Roseibium alexandrii DFL-11

ncbi_submitter: Moore Foundation


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Thermotoga petrophila

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Germany: Cologne

ncbi_isolation_source: abdomen

ncbi_submitter: Universtity Hospital Cologne


ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium adolescentis ATCC 15703

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: North Dakota

ncbi_organism_name: Xanthomonas translucens

ncbi_submitter: Kansas State University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Deinococcus soli (ex Cha et al. 2016)

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus;s__Deinococcus soli (ex Cha et al. 2016)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Escherichia coli

ncbi_submitter: Finnish Food Authority


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: Zwartia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Chinese Academy of Agricultural Sciences (CAAS)


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces anthocyanicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang Cancer Hospital


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: Jinan University


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: BIFIDO Co., LTD


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_submitter: Colorado State University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Dabaoshan; Guangdong Province

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: South china normal university


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Hong Kong

ncbi_isolation_source: sediment

ncbi_organism_name: Escherichia sp. E1130

ncbi_submitter: HongKong University of Science and Technology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Respiratory

ncbi_organism_name: Lactobacillus sp. HMSC24D01

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Xenorhabdus sp. TH1

ncbi_submitter: The University of Tennessee


ncbi_organism_name: Isoptericola sp. F-RaC21

ncbi_submitter: University of Palermo


ncbi_country: United Kingdom:London

ncbi_isolation_source: screening swab

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Public Health England


ncbi_country: Thailand

ncbi_isolation_source: Fermented starch (khao-khab)

ncbi_organism_name: Acetobacter farinalis

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Bulgaria: Plovdiv

ncbi_isolation_source: Rhisosphere

ncbi_strain_identifiers: BTG

ncbi_submitter: Institute of Microbiology, BAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar galleriae


ncbi_country: Italy

ncbi_isolation_source: sediment from mud volcano

ncbi_organism_name: Aciditerrimonas ferrireducens

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudidiomarina gelatinasegens


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus IS-24


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Eggerthia catenaformis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Uttar Pradesh

ncbi_isolation_source: Pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Nebraska

ncbi_isolation_source: cervico-vaginal swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: United State Department of Agriculture


ncbi_country: USA: Rochester; NY; Lake Ontario

ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonas sp. RIT778

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Anaerobutyricum sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 13ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fischeribacteriota;s__Candidatus Fischerbacteria bacterium RBG_13_37_8


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Jilin

ncbi_organism_name: Bifidobacterium sp. W8114

ncbi_submitter: China Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Coprobacillus sp. AF34-1BH

ncbi_submitter: BGI


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-436-O11

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Serratia ficaria

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: US Food and Drug Administration


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Idaho

ncbi_isolation_source: goat placenta

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: Idaho Goat Q195

ncbi_submitter: National Institutes of Health


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_country: USA: California; Eel River; Dobbyn Creek near Fort Seward

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Beijing

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_strain_identifiers: FH-tet-R

ncbi_submitter: Affiliated Hospital of Academy of Military Medical Science


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: EMG


ncbi_organism_name: Gemmobacter sp.


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: URMITE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Qinghai

ncbi_isolation_source: rectum

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NWAFU


ncbi_country: South Africa

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zoonosis Science Center


ncbi_country: Switzerland

ncbi_isolation_source: mountain cheese

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: France

ncbi_isolation_source: Plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of California


ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_submitter: Soochow University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: Segatella salivae


ncbi_country: South Korea: Jeju

ncbi_isolation_source: larvae

ncbi_organism_name: Limnobaculum allomyrinae

ncbi_submitter: BioPS Co., Ltd.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Toronto

ncbi_isolation_source: vaginal microbiome

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_organism_name: uncultured Roseibacillus sp.


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Italy

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 53180-1

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_organism_name: Microbacterium foliorum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Synechococcus sp. AG-676-F02

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Germany: Freiberg

ncbi_isolation_source: soil

ncbi_organism_name: Gordonia rubripertincta

ncbi_submitter: Bielefeld University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: China:Heilongjiang provience

ncbi_isolation_source: Chinese sauerkraut

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: key laboratory of microbiology


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum


ncbi_country: USA

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Najit Technologies, Inc.


ncbi_isolation_source: Blood culture

ncbi_organism_name: Cardiobacterium sp. Marseille-Q4385

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Flavipsychrobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: Micromonospora sp. LOL_028

ncbi_submitter: Academia Mexicana de Ciencias


ncbi_organism_name: uncultured Nitratifractor sp.


ncbi_organism_name: uncultured Synergistaceae bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chungnam national university


ncbi_isolate: SPRUCE 269

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_strain_identifiers: SPRUCE 269

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Kingella kingae

ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_organism_name: Streptomyces malaysiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp4 AA20

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp4 AA20

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_strain_identifiers: OSS 626

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: University of Waterloo


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Freshwater creek

ncbi_organism_name: Comamonas sp. JNW

ncbi_strain_identifiers: JNW

ncbi_submitter: Lycoming College


ncbi_assembly_name: Salmonella enterica CVM N44708 v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Kentucky

ncbi_submitter: FDA


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp. ADMS

ncbi_strain_identifiers: ADMS

ncbi_submitter: Netaji Subhas University of Technology


ncbi_country: Australia

ncbi_isolation_source: cattle feces

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_organism_name: Rudaea sp.

ncbi_submitter: Zhejiang University


ncbi_country: Sweden

ncbi_isolation_source: mouth

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Rhodococcus sp. 05-2255-1e

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 05-2255-1e


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Rumen uncultured genome RUG11785

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: delta ANR S3-15

ncbi_submitter: US Army CCDC Chemical Biological Center


ncbi_country: United Kingdom

ncbi_isolation_source: ear

ncbi_submitter: University of Liverpool


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Guangdong

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S059_01198

ncbi_submitter: Zhejiang University


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R998;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured OM182 clade bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;x__environmental samples;s__uncultured OM182 clade bacterium


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: fermented milk

ncbi_organism_name: Lactobacillus acidophilus

ncbi_strain_identifiers: CIRM-BIA 445

ncbi_submitter: Brigham Young University


ncbi_organism_name: Streptomyces sp. YPW6

ncbi_submitter: BGI Research


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: powdered infant formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Vibrio tritonius

ncbi_submitter: Hokkaido University


ncbi_organism_name: Longimicrobiales bacterium


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Urinicoccus sp.

ncbi_submitter: University of California, Davis


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: metagenome

ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Sichuan

ncbi_isolation_source: Fruit product

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: EPFL


ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Psychroserpens sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Desulfofustis sp.


ncbi_organism_name: Alistipes inops

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Kle_pne IVRI_FBI_615

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: University of South Africa


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Gemmataceae bacterium


ncbi_submitter: Universidad de Cadiz


ncbi_organism_name: uncultured Christensenellales bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: University of venda


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Bacillus sp. MFK14

ncbi_submitter: University College Dublin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. MFK14


ncbi_isolate: AOP30_C2_surf _bin _19

ncbi_organism_name: Psychrobacter alimentarius

ncbi_strain_identifiers: AOP30_C2_surf _bin _19

ncbi_submitter: Genoscope


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13672

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF COLORADO DENVER, SCHOOL OF MEDICINE


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: South Carolina

ncbi_isolation_source: pharyngeal mucosa

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Anaerofilum sp.

ncbi_submitter: Yonsei University


ncbi_country: Canada: McMasterville

ncbi_isolation_source: infected lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_organism_name: Kluyvera cryocrescens NBRC 102467

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Western Australia


ncbi_assembly_name: IMG-taxon 2687453689 annotated assembly

ncbi_organism_name: Novosphingobium sp. CF614

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Tsukamurella tyrosinosolvens

ncbi_submitter: Hunan Provincial People's Hospital,The First Affiliated Hospital of Hunan Normal University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Jiangellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: China: Shandong

ncbi_organism_name: Pantoea sp. DY-15

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_country: USA: PA

ncbi_isolation_source: intestine (Equus ferus caballus)

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Huizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Variovorax sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: sheep gut metagenome


ncbi_country: USA: CA

ncbi_isolation_source: white peach

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 44467_9

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_submitter: EPFL


ncbi_organism_name: Companilactobacillus huachuanensis

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Heilongjiang


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Brevibacterium limosum

ncbi_submitter: xiamen university


ncbi_assembly_name: freshwater MAG --- MJ110516A_bin-876

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Stenotrophomonas sp. CFBP 13724

ncbi_submitter: INRAE


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Proximal colon


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: USA: Riverside; CA

ncbi_isolation_source: adult bee gut

ncbi_organism_name: Apilactobacillus quenuiae

ncbi_submitter: University of California, Riverside


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Jieyang

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 15E399

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W85432

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: International Space Station

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_assembly_name: IMG-taxon 2609459735 annotated assembly

ncbi_organism_name: Collimonas sp. OK242

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Italy: Ancona

ncbi_isolation_source: Respiratory sample

ncbi_submitter: University of Genoa


ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus W25787


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sichuan University


ncbi_country: China: Urumqi;Xinjiang

ncbi_isolation_source: Frozen surimi product from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_country: USA: MD

ncbi_organism_name: Shigella flexneri

ncbi_strain_identifiers: DMB SH20030

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Ireland

ncbi_isolation_source: Seafood environment

ncbi_submitter: Teagasc Food Research Centre


ncbi_country: Canada: Red Deer

ncbi_organism_name: Microbacterium sp. RD11

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Netherlands

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Utrecht University


ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_isolation_source: human gut

ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: EMG


ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Pakistan

ncbi_isolation_source: water

ncbi_organism_name: Stenotrophomonas sp. GD03702

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Ignavibacterium sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Parasulfuritortus sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Segatella oris


ncbi_isolate: SPRUCE 281

ncbi_organism_name: Terriglobia bacterium

ncbi_strain_identifiers: SPRUCE 281

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Rennes


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Melissospora conviva

ncbi_submitter: University of Liege


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Wroclaw University of Environmental and Life Sciences


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bartonella sp. DGB2

ncbi_submitter: China Agricultural University


ncbi_organism_name: Paenibacillus amylolyticus

ncbi_submitter: Agriculture Victoria


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aeromonas sp. 601039

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Leuconostoc suionicum

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Cyanobium sp.


ncbi_organism_name: Trichococcus flocculiformis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-0281

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for medical research


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_submitter: The University of Auckland


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: VHProbi V38

ncbi_submitter: Nutrition &Health Technology Center


ncbi_organism_name: Lysinibacillus sphaericus

ncbi_strain_identifiers: Gar NS 2

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_assembly_name: Salmonella enterica CVM N48694 v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Ground Beef

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: New Zealand

ncbi_organism_name: Mesorhizobium japonicum R7A

ncbi_submitter: University of Otago


ncbi_country: USA: Kansas

ncbi_isolation_source: cattle hide

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: China: Ningxia

ncbi_isolation_source: pig fecal swab

ncbi_submitter: China Agricultural University


ncbi_organism_name: Sneathiella sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: sputum

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Technology Sydney


ncbi_country: USA: Seattle

ncbi_isolation_source: vagina

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: University of Washington


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3820

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Throat

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Paenibacillus lautus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Bern


ncbi_organism_name: Sphingomonas sp. PP-CE-1A-559


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Sphingobacterium sp. UBA2074


ncbi_assembly_name: IMG-taxon 2599185228 annotated assembly

ncbi_organism_name: Marvinbryantia formatexigens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Poland: Warszawa

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces flaveolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Switzerland: Basel

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: Alistipes senegalensis 81E7

ncbi_organism_name: Alistipes senegalensis

ncbi_strain_identifiers: Alistipes senegalensis 81E7

ncbi_submitter: Keio University, School of Medicine


ncbi_organism_name: Ligilactobacillus murinus


ncbi_assembly_name: Unknown Anaerolineaceae bacterium AM_2104

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_submitter: University of Pavia


ncbi_country: Lebanon

ncbi_isolation_source: urine

ncbi_strain_identifiers: hoffmannii

ncbi_submitter: lebanese american university


ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;x__pseudomallei group;s__Burkholderia pseudomallei;x__Burkholderia pseudomallei NCTC 13392;x__Burkholderia pseudomallei str. NCTC 13392 substr. morphotype_10


ncbi_country: South Korea

ncbi_isolation_source: Human Stool

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter defluvii

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Pseudomonas sp. ALS1279

ncbi_submitter: Universidad Tecnologica Metropolitana (UTEM)


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_country: Pakistan

ncbi_isolation_source: water

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Indiana

ncbi_submitter: Purdue University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Fl Pleural

ncbi_submitter: Monash University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EBI


ncbi_assembly_name: IMG-taxon 2687453776 annotated assembly

ncbi_organism_name: Kaistella antarctica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Proximal colon


ncbi_isolation_source: Seed

ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: CFBP 7700

ncbi_submitter: INRA


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: seawater

ncbi_organism_name: Rhodobacterales bacterium HKCCA1085

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: feces

ncbi_organism_name: Romboutsia ilealis


ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: The laboratory of genetics and plant breeding, The National institute of Agronomy of Tunis


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Montreal

ncbi_isolation_source: Dental unit waterline

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: 146 Assistante

ncbi_submitter: Universite Laval


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: IMG-taxon 2698536943 annotated assembly

ncbi_country: Antarctica: Organic Lake

ncbi_organism_name: Salegentibacter salegens

ncbi_strain_identifiers: ACAM 48


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_organism_name: Paenibacillus macerans

ncbi_submitter: NARO Institute of Livestock and Grassland Science


ncbi_organism_name: Agarilytica sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_country: India: Sila Grant

ncbi_isolation_source: Raw milk

ncbi_submitter: Indian Veterinary Research Institute


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Biotechnology, BTU Cottbus-Senftenberg


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Eggerthella lenta


ncbi_submitter: Universite de Limoges


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Microbacterium sp. NPDC058345

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Megamonas hypermegale

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Rumen uncultured genome RUG12360

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Brazil: Belem

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-08754

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__environmental samples;s__uncultured Candidatus Berkelbacteria bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: China

ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Bogdanove Lab, Plant Pathology and Plant-Microbe Biology, Cornell University


ncbi_assembly_name: Rumen uncultured genome RUG10367

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Saprospirales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Saprospiria;o__Saprospirales;x__environmental samples;s__uncultured Saprospirales bacterium


ncbi_country: Mexico: Jalisco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium grahamii CCGE 502

ncbi_strain_identifiers: CCGE 502

ncbi_submitter: Universidad Nacional Autonoma de Mex


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Massilia timonae


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0923

ncbi_submitter: Broad Institute


ncbi_organism_name: Cohnella abietis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cyanobacteria bacterium P01_F01_bin.33

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_F01_bin.33


ncbi_country: France: Bordeaux

ncbi_isolation_source: stool

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institut Pasteur Montevideo


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital,School of Medicine,Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Chile: Santiago

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Chicago

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolate: Reference

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_strain_identifiers: Reference

ncbi_submitter: dtu national food institute


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: Butyribacter intestini

ncbi_submitter: BGI


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_organism_name: Candidatus Desulfobacillus sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Desulfobacillus;x__unclassified Candidatus Desulfobacillus;s__Candidatus Desulfobacillus sp.


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Santa Clara County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: food

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: University of Florida


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: enrichment culture inoculated from microbial mat taken from cave lake water sample and incubated with methylated amine as carbon substrate

ncbi_organism_name: Gemmobacter sp. LW-1

ncbi_submitter: University of Western Australia


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Desulfobacula sp. GWF2_41_7

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Kenya

ncbi_isolation_source: fecal sample

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Guangxi; Dashan

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_country: Japan

ncbi_isolation_source: skin of face; 1 single-cell amplified by MDA combined with human skin metagenome reads

ncbi_organism_name: Faucicola osloensis

ncbi_submitter: bioBiome, Inc.


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Tonga: Eastern Lau Spreading Center

ncbi_isolation_source: gill from hydrothermal vent

ncbi_submitter: University of Rhode Island

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Gammaproteobacteria endosymbiont of Alviniconcha kojimai


ncbi_country: USA: CA

ncbi_isolation_source: water

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Canada: Ontario

ncbi_organism_name: Escherichia coli

ncbi_submitter: TUFGEN


ncbi_strain_identifiers: 99540;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Palmer LTER


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-195

ncbi_submitter: Broad Institute


ncbi_organism_name: Rahnella inusitata

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Colorado at Boulder


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Streptomyces violarus

ncbi_strain_identifiers: CECT 3237

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Norway

ncbi_isolation_source: Polypropylene

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Institute of Marine


ncbi_country: Germany: Berlin

ncbi_isolation_source: gastric corpus

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Blood

ncbi_organism_name: Enterococcus faecalis EnGen0070


ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Syntrophobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Amycolatopsis lurida

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France

ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Parvibaculaceae bacterium Mf 1.05b.01

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Columbia River coastal margin; salinty 33

ncbi_organism_name: Halieaceae bacterium UBA3444

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Joint Institute for Nuclear Research


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RIFCSPHIGHO2_01_FULL_44_10


ncbi_organism_name: Xenorhabdus mauleonii

ncbi_submitter: Goethe University


ncbi_country: USA: Arizona; Pima County; Tucson

ncbi_isolation_source: oral cavity

ncbi_organism_name: Neisseria musculi

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Malawi

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_country: USA: IL

ncbi_isolation_source: honey powder

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Spain: Balearic Islands; Mallorca Island; Calvia

ncbi_isolation_source: marina surface coastal water

ncbi_organism_name: Sulfitobacter pontiacus 3SOLIMAR09

ncbi_submitter: Microbiology. Departament of Biology. University of Balearic Islands


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Waltera sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Sphingomonas leidyi

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Enemella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Salmonella sp. SKLX084011

ncbi_submitter: Zhejiang university


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Streptomyces sp. NPDC056045

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Thalassospira sp.


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptomyces rimosus


ncbi_organism_name: Aphanizomenon sp.

ncbi_submitter: University of Michigan


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV125

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: ballast tank

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Shandong university


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Egypt

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_organism_name: Rickettsia helvetica

ncbi_submitter: National Institute of Public Health and Environment (RIVM)


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: NARMS

ncbi_isolation_source: chicken carcass rinsate

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: USDA-ARS-USNPRC-RRC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Negativicoccus sp.


ncbi_country: United Kingdom

ncbi_isolation_source: sputum sample from CF patient

ncbi_organism_name: Mycobacteroides abscessus 47J26

ncbi_submitter: University of Birmingham


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: India: Puducherry

ncbi_isolation_source: Bleb fluid

ncbi_submitter: Jawaharlal Institute of Postgraduate Medical Education and Research


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Spain: Mallorca; El Arenal

ncbi_isolation_source: flooring

ncbi_organism_name: Planctomycetes bacterium MalM25

ncbi_submitter: Radboud Universiteit Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium MalM25


ncbi_country: Italy: Friuli Venezia Giulia

ncbi_isolation_source: vines of asymptomatic plants

ncbi_organism_name: Pseudomonas asplenii

ncbi_submitter: University of Udine


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: California Department of Public Health


ncbi_isolation_source: Unknown

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: AAFC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonas australica

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: Brazil: BA

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: FIOCRUZ


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Candidatus Barnesiella excrementavium

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. CG1

ncbi_submitter: Hunan University of Science and Technology


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Rumen uncultured genome RUG11324

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA: FL

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: Supragingival and interproximal dental plaque

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Antarctica: South Shetland Islands; Laguna Chica

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechococcus sp. CS-1325

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: India: Pangong Lake; Ladakh; Jammu and Kashmir

ncbi_isolation_source: Sediment

ncbi_organism_name: Shewanella sp. ISTPL2

ncbi_submitter: Jawaharlal Nehru University


ncbi_country: Canada: Mont-Saint-Hilaire (QC)

ncbi_isolation_source: tree leaf surface

ncbi_organism_name: Methylobacterium sp. J-067

ncbi_submitter: Universite du Quebec a Montreal


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: New Brunswick

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: California

ncbi_isolation_source: marine sediment

ncbi_organism_name: Hydrogenovibrio sp. JE_KL2

ncbi_submitter: UC Davis


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_country: Brazil

ncbi_isolation_source: Surveillance swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Urethral

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: Poultry Farm


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides fragilis str. Ds-233

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. Ds-233


ncbi_country: Indonesia

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: - - Department of Biology, Universitas Pelita Harapan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thermomicrobiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Candidatus Segetimicrobium genomatis

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Segetimicrobiaceae;g__Candidatus Segetimicrobium;s__Candidatus Segetimicrobium genomatis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Segetimicrobiaceae;g__Candidatus Segetimicrobium;s__Candidatus Segetimicrobium genomatis


ncbi_organism_name: Legionella bozemanae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Kazakhstan: Nur-sultan

ncbi_isolation_source: purulent sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: National Center for Biotechnology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: South Carolina

ncbi_organism_name: Enterococcus sp. 3C7_DIV0644

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus thiooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: IMG-taxon 2619618873 annotated assembly

ncbi_organism_name: Flavobacterium sinopsychrotolerans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE