ncbi_country: USA: Carlsbad Caverns National Park

ncbi_organism_name: Streptomyces buecherae

ncbi_submitter: NCAUR-ARS-USDA


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Germany: Zoo Saarbruecken

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_assembly_level: Contig

ncbi_country: Mexico: La Paz

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Photobacterium damselae

ncbi_submitter: CIAD, A.C.


ncbi_organism_name: Enterobacteriaceae bacterium ATCC 29904

ncbi_submitter: Los Alamos National Laboratory


gtdb_representative: t

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China

ncbi_isolation_source: Lactose powder

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_country: Germany

ncbi_organism_name: Actinacidiphila cocklensis

ncbi_submitter: Nicolaus Copernicus University


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: World Institute of Kimchi


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides sp. AM25-34

ncbi_submitter: BGI


ncbi_isolate: SPRUCE 629

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_strain_identifiers: SPRUCE 629

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: South Africa

ncbi_organism_name: Sphingomonas sp. Mn802worker

ncbi_submitter: JGI


ncbi_country: Belgium: Ghent

ncbi_isolation_source: vagina

ncbi_organism_name: Gardnerella piotii

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: UGent 18.01

ncbi_submitter: Ghent University

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Chromosome

ncbi_country: USA

ncbi_isolation_source: Tracheal Aspirate/Wash

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: USA: New York City

ncbi_organism_name: Corynebacterium bovis

ncbi_strain_identifiers: WCM3 - SMALL

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Ecuador: Quito

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad San Francisco de Quito


ncbi_country: Canada: Langley; BC

ncbi_isolation_source: sample collected from honey bee larvae displaying clinical signs of European Foulbrood Disease within a brood chamber in a bee hive

ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_country: United Kingdom

ncbi_isolation_source: root from Grassland

ncbi_organism_name: Pseudomonas sp. GL-RE-29

ncbi_submitter: Rothamsted Research


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Smithella sp. UBA6208

ncbi_submitter: University of Queensland


ncbi_isolation_source: Fruits and Vegetables

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Rehman Medical Institute Peshawar, Pakistan


ncbi_country: China: Lincang; Yunnan province

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas sp. 21LCFQ02

ncbi_submitter: Yunnan Academy of Tobacco Agriculture Science


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: Iraq: Thi-Qar

ncbi_isolation_source: artisanal milk cheeses

ncbi_submitter: Thi-Qar University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Panama: Bocas del Toro; Inner Solarte

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: Switzerland: Taegertschen

ncbi_isolation_source: raw milk cheese

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Agroscope


ncbi_organism_name: Candidatus Scatomorpha sp.

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;x__unclassified Candidatus Scatomorpha;s__Candidatus Scatomorpha sp.


ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Grupo de Microbiologia


ncbi_organism_name: uncultured Mycobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriales bacterium UBA2104


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: genome

ncbi_country: Japan: Saitama Prefecture

ncbi_isolation_source: a paddy field soil sample

ncbi_organism_name: Intrasporangium oryzae NRRL B-24470

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Canada: Quebec

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Korea University


ncbi_isolation_source: Urine

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O103:H2;x__Escherichia coli O103:H2 str. 2010C-4433


ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Mississippi Medical Center


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: trachea

ncbi_organism_name: Bordetella avium

ncbi_submitter: amedes GmbH


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: Clinical Microbiology Laboratory

ncbi_submitter: Guangdong Provincial People's Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Brown University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: Australia

ncbi_isolation_source: sheep feces

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: United Kingdom: Wales; Cardiff; Radyr Chain

ncbi_isolation_source: garden soil

ncbi_organism_name: Rhodococcus sp. NCIMB 12038

ncbi_strain_identifiers: NCIMB 12038

ncbi_submitter: Queens University Belfast

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NCIMB 12038


ncbi_country: Italy

ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_country: USA: Bridger Bay in Great Salt Lake; Utah

ncbi_isolation_source: Microbial Mat

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Montana State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: France

ncbi_isolation_source: Minced meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Catenibacterium sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: Canada: Guelph

ncbi_submitter: University of Guelph


ncbi_assembly_name: Rumen uncultured genome RUG11172

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: National Biopesticide Engineering Technology Research Centre, Hubei Academy of Agricultural Sciences


ncbi_organism_name: uncultured Oleiharenicola sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Megasphaera massiliensis


ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: USDA


ncbi_country: Canada: Lacombe

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Hubei

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wuhan CDC


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_submitter: Beijing Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis;x__Yersinia pestis subsp. pestis bv. Antiqua;x__Yersinia pestis biovar Antiqua str. E1979001


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_submitter: The University of Hong Kong


ncbi_country: Australia: Queensland

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: Colorado State U


ncbi_isolation_source: Atlantic coast

ncbi_submitter: FDA/CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus O4:K55 str. NY3547


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium 48-21

ncbi_submitter: Nanjing University


ncbi_country: Spain: Ribadeo; Galicia

ncbi_isolation_source: larvae in seawater tank

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Mesorhizobium sp. M0494

ncbi_submitter: Washington State University


ncbi_country: China: Gaungdong

ncbi_submitter: South China Agricultural University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Aleiodes leptofemur


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_assembly_name: Pedobacter heparinus DSM 2366 HGAP Assembly

ncbi_organism_name: Pedobacter heparinus DSM 2366

ncbi_submitter: Pacific Biosciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter;s__Pedobacter heparinus;x__Pedobacter heparinus DSM 2366


ncbi_country: Canada: Toronto

ncbi_isolation_source: ice cream

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Ares Genetics


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- YR_bin-0410

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Stenotrophomonas bentonitica


ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China

ncbi_isolation_source: slaughterhouse

ncbi_organism_name: Salmonella sp. YT10

ncbi_submitter: Yangzhou University


ncbi_organism_name: Escherichia coli


ncbi_organism_name: bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil

ncbi_isolation_source: Bleached coral

ncbi_organism_name: Photobacterium sanctipauli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: WA

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: University of Washington


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;s__Candidatus Collierbacteria bacterium RIFOXYB2_FULL_46_14


ncbi_isolation_source: Clinical laboratory

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Northeastern University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Prosthecobacter debontii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: feces

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_isolation_source: Cloacal swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Bradyrhizobium sp. LLZ17

ncbi_submitter: University of Mohammed V


ncbi_assembly_name: freshwater MAG --- Umea1_bin-1526

ncbi_organism_name: uncultured Synechococcus sp.


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Paraeggerthella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: California

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. novicida;x__Francisella tularensis subsp. novicida F6168


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Maryland


ncbi_organism_name: Microcystis aeruginosa


ncbi_isolation_source: Liver abscess puncture fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Department of Laboratory Medicine


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Daviesbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;x__unclassified Candidatus Daviesbacteria;s__Candidatus Daviesbacteria bacterium


ncbi_isolation_source: Chicken Breast

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium RIFOXYB1_FULL_54_35


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Cellvibrionales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: Rumen uncultured genome RUG11491

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Nioella sp.


ncbi_country: USA:New York Suffolk

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_submitter: PulseNet USA


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: soil sediment

ncbi_organism_name: Exiguobacterium sp. s56

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s56


ncbi_organism_name: Streptomyces sp. F41

ncbi_submitter: Southwest University


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Mesorhizobium sp. 65-26


ncbi_assembly_name: Dyadobacter tibetensis Y620-1

ncbi_country: China: Tibet

ncbi_isolation_source: glacial ice core

ncbi_organism_name: Dyadobacter tibetensis Y620-1

ncbi_submitter: Institute of Urban Environment


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Yersinia enterocolitica subsp. enterocolitica


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia


ncbi_organism_name: Sneathiella sp.

ncbi_submitter: University of Southern California


ncbi_country: Turkey: Mugla

ncbi_isolation_source: Fish Farm

ncbi_organism_name: Chryseobacterium muglaense

ncbi_submitter: Erciyes University


ncbi_country: Pakistan: Faisalabad; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. F_11

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sioyaensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Fusobacterium varium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Anaerovoracaceae bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 50

ncbi_submitter: The Chinese University of Hong Kong


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Streptococcus salivarius


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0677

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Spain

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Barcelona


ncbi_country: India: Punjab; Faridkot; Wara Daraka

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Brucella abortus

ncbi_strain_identifiers: Cam-1_ MGL

ncbi_submitter: Institute of Veterinary Medicine in Mongolia


ncbi_country: Australia: Melbourne

ncbi_isolation_source: cough swab

ncbi_organism_name: Haemophilus parainfluenzae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3863

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands:De Krim

ncbi_isolation_source: water

ncbi_organism_name: Solidesulfovibrio carbinolicus

ncbi_submitter: California Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG378

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG13925

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL037PA1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Histophilus somni

ncbi_submitter: USDA-ARS-USMARC


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Rickettsiaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Idiomarina sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-0034

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: BILS


ncbi_country: USA: Maryland

ncbi_isolation_source: urine

ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Michigan Medical School


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_organism_name: uncultured Aggregatibacter sp.


ncbi_organism_name: Actinomyces urogenitalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:i


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_country: China: Tianjin

ncbi_organism_name: Proteus vulgaris

ncbi_submitter: Nankai University


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Russia: Moscow

ncbi_isolation_source: liquor

ncbi_submitter: SRCAMB


ncbi_country: Peru

ncbi_organism_name: Shigella dysenteriae

ncbi_strain_identifiers: DMB SH20168

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: uncultured Nitrosomonas sp.

ncbi_submitter: Lund University


ncbi_country: Germany: Hallbergmoos

ncbi_organism_name: Bombella dulcis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: USA: PA; Montoursville; Loyalsock Creek

ncbi_isolation_source: Freshwater creek

ncbi_organism_name: Chryseobacterium sp. JAH

ncbi_strain_identifiers: JAH

ncbi_submitter: GCAT-SEEK


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: USA: FL

ncbi_isolation_source: feces calf (Bos taurus)

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Minthosoma equi

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Candidatus Minthosoma;s__Candidatus Minthosoma equi


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Bartonella sp. CB169

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Germany: Koblenz

ncbi_isolation_source: sputum

ncbi_organism_name: Mycolicibacterium confluentis

ncbi_submitter: Uppsala University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil from wetland

ncbi_organism_name: Acinetobacter sp. SM34

ncbi_submitter: Hankyong National University


ncbi_country: India: New Delhi

ncbi_isolation_source: soil sample

ncbi_organism_name: Bacillus tropicus

ncbi_submitter: Indian Institute of Technology Delhi


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sulfurimonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Tunisia: Mornag

ncbi_isolation_source: milk

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_organism_name: Glaciihabitans tibetensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Kenya

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Xanthomonas sp. NCPPB 2632

ncbi_strain_identifiers: NCPPB 2632

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_country: Mexico: Colima

ncbi_isolation_source: root

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Variovorax sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Catalimonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: University of the Sunshine Coast


ncbi_isolate: metabat2_6730_HET_VAC_metaflye.321 MAG

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_strain_identifiers: metabat2_6730_HET_VAC_metaflye.321 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Mali

ncbi_isolation_source: rice product

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA: Massachusetts; Carver

ncbi_isolation_source: berry surface

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Midwestern University


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_organism_name: Lysinibacillus xylanilyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Ecuador: Guayaquil

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Guayaquil


ncbi_country: USA

ncbi_organism_name: Geothrix fermentans DSM 14018


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Netherlands

ncbi_isolation_source: kebap

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: RIVM BC 964

ncbi_submitter: TU Muenchen


ncbi_country: China

ncbi_isolation_source: bile

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Caldimicrobium sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: endosphere

ncbi_organism_name: uncultured Fluviicola sp.

ncbi_submitter: NIOO KNAW


ncbi_country: Ghana: Nyankpala site 2

ncbi_isolation_source: Kantong

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Brucella suis 06-791-1309

ncbi_submitter: Broad Institute


ncbi_organism_name: Shewanella algae

ncbi_submitter: the seqafrica consortium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. NPDC051016


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Princeton University


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: uncultured Actinomycetota bacterium


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rochdale


ncbi_organism_name: Coraliomargaritaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Roseivirga sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Acinetobacter sp. NPDC052428

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Methylocella sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Thiotrichales bacterium


ncbi_organism_name: Firmicutes bacterium TM09-10

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium TM09-10


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University Microbial Pathogenomics Lab


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Anaerotignum lactatifermentans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Flavobacteriales bacterium UBA5519


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bacteroides stercoris ATCC 43183

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercoris;x__Bacteroides stercoris ATCC 43183


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: respiratory tract

ncbi_organism_name: Actinomyces marmotae

ncbi_submitter: China CDC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: The Italian National Institute of Health


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactococcus garvieae


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 2-156-04_S3_C3

ncbi_submitter: IGS


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides ovatus


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EBI


ncbi_country: India: Vellore

ncbi_isolation_source: Respiratory specimen

ncbi_submitter: Christian Medical College, Vellore


ncbi_country: Spain: Mallorca

ncbi_isolation_source: Haemodialysis water

ncbi_organism_name: Roseateles puraquae

ncbi_submitter: University of Balearic Islands


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Cellulomonas sp. Leaf395

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: United Kingdom

ncbi_isolation_source: Blood


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0665

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Phycisphaerae bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__environmental samples;s__uncultured Phycisphaerae bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: sewage plant

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: WEC

ncbi_submitter: Harbin Normal University


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Copenhagen


ncbi_country: USA: Memphis

ncbi_organism_name: Bacillus cereus

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Toe web space swab

ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: municipal wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_isolation_source: rat gut

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: University of Queensland


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Serbia

ncbi_isolation_source: human

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidade Catolica Portuguesa


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Yale University


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Mycobacterium tuberculosis WX3

ncbi_submitter: Fudan University


ncbi_submitter: Universidad del Desarrollo


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Streptomyces sp. NPDC058632

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ130617B_bin-276

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroides acidifaciens


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Brevibacillus agri

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Acholeplasmataceae bacterium UBA4904

ncbi_submitter: University of Queensland


ncbi_country: China: Chengdu

ncbi_isolation_source: intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Paenibacillus sp. FSL M7-0656

ncbi_submitter: Penn State


ncbi_country: Peru:Ascope; Casa Grande; Mocan

ncbi_organism_name: Yersinia pestis PY-36

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: FL

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Bacillus inaquosorum


ncbi_country: China: HeNan

ncbi_isolation_source: Lavage fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-

ncbi_submitter: Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: heart

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Hunan

ncbi_isolation_source: paddy soil

ncbi_organism_name: Atlantibacter subterraneus

ncbi_submitter: Jinan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus sp. C61

ncbi_submitter: Northwest A & F University


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes


ncbi_country: USA: Carson; CA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thiomonas sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Kiloniella sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Anaerotruncus colihominis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: United Kingdom

ncbi_isolation_source: Lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Canada: Winfield; Alberta

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: University of Chicago


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Atlanta

ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae NOR_2011_03-06

ncbi_submitter: Read Laboratory, Emory University


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Vibrio furnissii

ncbi_submitter: CDC


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Mediterranea sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Southern Federal University


ncbi_country: South Africa

ncbi_isolation_source: Hand Swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: UPMP 1158

ncbi_submitter: University of Pretoria


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: Finland

ncbi_isolation_source: packaged chicken broiler leg

ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Norfolk State University


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: feces from healthy subject

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: North Carolina State University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Hospital patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LONDON SCHOOL OF HYGIENE AND TROPICAL MEDICINE


ncbi_country: USA: Rochester; NY

ncbi_submitter: URMC


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Klebsiella sp. WP7-S18-ESBL-04

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Bacillus thuringiensis serovar medellin

ncbi_submitter: University of Bath

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar medellin


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Spain: Benimantell (Alicante)

ncbi_isolation_source: leaf petioles

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: XF-ACTORS


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Microbacterium sp. SORGH_AS_0862

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Peru


ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter fetus;sb__Campylobacter fetus subsp. venerealis;x__Campylobacter fetus subsp. venerealis bv. intermedius;x__Campylobacter fetus subsp. venerealis cfvi03/293


ncbi_country: Morocco: Merzouga desert

ncbi_isolation_source: Desert plant free sand dune

ncbi_organism_name: Ensifer aridi

ncbi_submitter: Dr. Antoine Le Quere


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Guizhou

ncbi_isolation_source: karstic limestone

ncbi_organism_name: Lentzea guizhouensis

ncbi_strain_identifiers: DHS C013

ncbi_submitter: Jiangsu normal university


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-352

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-352


ncbi_country: South Korea: Boseong

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Pseudohalocynthiibacter aestuariivivens

ncbi_submitter: Sungkyunkwan University


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Psychrobacillus sp. PGGUH221

ncbi_submitter: University of Galway


ncbi_country: Finland: Helsinki

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Helsinki University


ncbi_organism_name: Streptomyces sp. NPDC014746

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8469

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Australia: Queensland

ncbi_isolation_source: Skin lesion swab

ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: The University of Queensland


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Texas at Dallas


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Borreliella turdi

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_assembly_name: freshwater MAG --- Loclat_bin-07687

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli UMEA 3355-1

ncbi_submitter: Broad Institute


ncbi_country: South Korea

ncbi_isolate: CNIEBac

ncbi_strain_identifiers: CNIEBac

ncbi_submitter: InfoBoss Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__ant endosymbionts;g__Candidatus Blochmanniella;x__unclassified Candidatus Blochmanniella;s__Blochmannia endosymbiont of Camponotus nipponensis


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Desulfovibrio sp. 3_1_syn3


ncbi_strain_identifiers: CFBP 1232

ncbi_submitter: CeBiTec

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Erwinia;s__Erwinia amylovora;x__Erwinia amylovora NBRC 12687 = CFBP 1232


ncbi_country: Georgia: Marneuli

ncbi_isolation_source: intestine

ncbi_organism_name: Yersinia enterocolitica

ncbi_strain_identifiers: LcENCDC Rint 5

ncbi_submitter: NCDC of Georgia


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. MB02u-18

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Candidatus Sulfurimonas ponti

ncbi_submitter: Utrecht University


ncbi_organism_name: Streptomyces sp. NBC_00250

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Adlercreutzia caecimuris


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Virgibacillus necropolis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_assembly_name: WGS using MinION R10.4.1 of Staphylococcus aureus TUM20967

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Faecalibacterium taiwanense

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: the coastal area of Weihai

ncbi_isolation_source: marine sediment

ncbi_organism_name: Bacillus marinisedimentorum

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Chromatiaceae bacterium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Cryptobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Hawaii; Pololu

ncbi_isolation_source: brackish water stream mouth

ncbi_organism_name: Candidatus Protistibacter heckmannii

ncbi_submitter: University of British Columbia


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 200 (4-4449924)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 200 (4-4449924)

ncbi_type_material_designation: assembly designated as clade exemplar


ncbi_isolation_source: Hospital Universitario Marques de Valdecilla (Santander)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_country: Hungary

ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: University of Debrecen


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: China: Hunan

ncbi_isolation_source: ventilator

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Citrobacter sp. ESBL3

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Russia: Troitsa Bay; Sea of Japan

ncbi_isolation_source: Bottom sediment

ncbi_organism_name: Vibrio sp. 14G-20

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Burkholderia sp. Bp9126

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Water bottle; Animal room

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: US Food and Drug Administration


ncbi_isolate: MEAT

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: MEAT;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_country: USA: Ohio; Lake Erie; Sandusky Bay

ncbi_isolation_source: Freshwater

ncbi_organism_name: Planktothrix agardhii 1027

ncbi_submitter: Bowling Green State University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Norway: Troms

ncbi_isolation_source: eye

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Santiago

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Fiji

ncbi_organism_name: Xanthomonas albilineans

ncbi_submitter: INRA


ncbi_organism_name: Pseudomonas chlororaphis subsp. piscium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. piscium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Obihiro University of Agriculture and Veterinary Medicine


ncbi_isolation_source: clinical

ncbi_organism_name: Legionella pneumophila

ncbi_strain_identifiers: OLDA

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_37_10


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Mycoplasmatales bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Pseudoruminococcus massiliensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F86379

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: sichuan university


ncbi_isolation_source: Urine

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CDC


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: ARRIAM


ncbi_organism_name: Pseudomonas qingdaonensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf224

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Sphingobacteriaceae bacterium UBA6709

ncbi_submitter: University of Queensland


ncbi_country: Canada: Lacombe

ncbi_organism_name: Acidaminococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC058335

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Denmark: Mariagerfjord

ncbi_isolation_source: activated sludge from Mari_18-Q3-R65-66

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Eye Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. LSP 272/98

ncbi_submitter: University of Oviedo


ncbi_organism_name: Negativibacillus sp.

ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__unclassified Negativibacillus;s__Negativibacillus sp.


ncbi_organism_name: uncultured Iamiaceae bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: water

ncbi_organism_name: Elusimicrobia bacterium UBA1570

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;x__unclassified Elusimicrobiota;s__Elusimicrobia bacterium UBA1570


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Sun Yat-sen University


ncbi_country: Italy

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Harvard University


ncbi_country: France

ncbi_isolation_source: sourdough

ncbi_organism_name: Pediococcus pentosaceus

ncbi_strain_identifiers: LBAE E3

ncbi_submitter: Brigham Young University


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: Argentina: Rosario; Santa Fe

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: IBR-Conicet, UNR-FBIOYF


ncbi_country: India

ncbi_isolation_source: frozen yellowfin tuna nakaochi scrape

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN001115


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolate: Pectobacterium polaris IPO_1948

ncbi_organism_name: Pectobacterium polaris

ncbi_strain_identifiers: Pectobacterium polaris IPO_1948

ncbi_submitter: UNIVERSITY OF HELSINKI


ncbi_organism_name: Veillonella parvula

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.


ncbi_organism_name: Clostridium sulfidigenes


ncbi_country: Australia

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_organism_name: Chromobacterium violaceum

ncbi_submitter: Midwestern University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Colombia: Bolivar

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_submitter: University of Manitoba


ncbi_country: USA

ncbi_isolation_source: Nebraska

ncbi_submitter: University of Nebraska Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 205 (4-3094677)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 205 (4-3094677)


ncbi_assembly_name: Rumen uncultured genome RUG11665

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Egypt: Nobaria

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Exiguobacterium indicum

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium indicum


ncbi_organism_name: Clostridium tertium

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8860

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Mesoaciditoga sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pseudobacteriovorax antillogorgiicola

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Russia: Novosibirsk region

ncbi_isolation_source: limnetic water

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: NEB


ncbi_country: Russia: Kislovodsk

ncbi_isolation_source: human feces (woman; 24 years old)

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: FSBSI Institute of Experimental Medicine


ncbi_isolation_source: feces

ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Complexo Hospitalario Universitario A Coruna


ncbi_organism_name: Rodentibacter rarus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Acetobacter pasteurianus

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia sp. MSMB0856

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Singapore

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National University of Singapore


ncbi_country: China: Rongcheng

ncbi_organism_name: Pseudoalteromonas arctica

ncbi_submitter: Shandong Normal University


ncbi_organism_name: Agrobacterium radiobacter

ncbi_strain_identifiers: SEMIA 437

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- Umea2_bin-1588

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_country: France: Nimes

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: B-DAP-SS

ncbi_submitter: Nimes University Hospital


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Sydney


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWC1_43_12


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Communicable Disease


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan: Sea of Japan; Troitsa Bay

ncbi_organism_name: Polaribacter reichenbachii

ncbi_submitter: GEOMAR Helmholtz Center for Ocean Research Kiel


ncbi_organism_name: Lentilitoribacter sp.


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bilophila wadsworthia 3_1_6

ncbi_submitter: Broad Institute


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Japan: Nagano; Suwa

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: DE

ncbi_isolation_source: infant

ncbi_organism_name: Escherichia coli DEC10C

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: biopsy middle ear

ncbi_organism_name: Gulosibacter hominis

ncbi_submitter: University Hospital Basel


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: King City; CA

ncbi_isolation_source: field

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: uncultured Ruthenibacterium sp.


ncbi_organism_name: Citrobacter portucalensis

ncbi_strain_identifiers: LK_338 Iso 5

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Austria

ncbi_isolation_source: Bacon from Turkey

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Iowa State University


ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium sp. HMSC055D05

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Salmonella sp. NW756

ncbi_submitter: Sichuan University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Chloracidobacterium sp.


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: Scrofimicrobium sp.


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Coprococcus comes ATCC 27758

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus;s__Coprococcus comes;x__Coprococcus comes ATCC 27758


ncbi_organism_name: Butyribacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_organism_name: Rhodoluna sp.


ncbi_organism_name: Flagellimonas iocasae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities