ncbi_country: Taiwan

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: Academia Sinica


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Martinique

ncbi_genome_representation: full

ncbi_organism_name: Leptospira santarosai

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: First Affiliated Hospital of Guangzhou Medical University,Guangzhou Institute of Respiratory Health,


ncbi_assembly_level: Scaffold

ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: four week timepoint of microcosm treated with photo-oxidized crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Minwuia sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Terrabacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


gtdb_representative: t

ncbi_assembly_name: IMG-taxon 2597490340 annotated assembly

ncbi_organism_name: Azotobacter beijerinckii

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: DSM 378

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Methylibium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Methylobacterium brachiatum

ncbi_submitter: Northwest Missouri State University


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shaanxi; Xi an

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_assembly_name: Rumen uncultured genome RUG10552

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_level: Complete Genome

ncbi_country: Germany

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: UCC isolate

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_submitter: University of Pittsburgh


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Monash University


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Canada: Alberta

ncbi_isolation_source: oil sands tailings pond

ncbi_organism_name: Pseudomonas veronii

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Netherlands

ncbi_strain_identifiers: STEC 2667

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_organism_name: Flavobacteriaceae bacterium UBA3078

ncbi_submitter: University of Queensland


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pathology Lab

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater from Yellow Sea

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Winogradskyella sp.


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_submitter: University of Surrey


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: University of Southern California


ncbi_isolate: SPRUCE 102

ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_strain_identifiers: SPRUCE 102

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Reyranella sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Landesbetrieb Hessisches Landeslabor (LHL)


ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Cellulosimicrobium cellulans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: University of California, Santa Barbara

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Nocardiopsis dassonvillei

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Bern University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Cytobacillus oceanisediminis

ncbi_strain_identifiers: MER TA 138-2

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Pakistan

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas sp. GD03855

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Japan

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: occiput

ncbi_organism_name: Staphylococcus epidermidis NIHLM057

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas protegens

ncbi_strain_identifiers: BRIP

ncbi_submitter: JLU


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_organism_name: Elainella sp.

ncbi_submitter: Rutgers University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_submitter: China Agriculture University


ncbi_organism_name: Streptomyces flaveolus

ncbi_strain_identifiers: NRRL B-1589

ncbi_submitter: University of Illinois


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 227

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: SNUC 4830

ncbi_submitter: University of Calgary


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Australia: Sydney

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Oxford


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_country: USA: Texas; Houston; San Jacinto River

ncbi_isolation_source: river sediment

ncbi_organism_name: Microbacterium sp. AISO3

ncbi_submitter: University of Houston


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Psychrobacter sp. G

ncbi_strain_identifiers: G

ncbi_submitter: The First Institute of Oceanography, SOA


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides caecimuris


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Weihai

ncbi_isolation_source: rectom of abalone

ncbi_organism_name: Polaribacter sp. Z022

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aerococcus suis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Italy

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Aliarcobacter skirrowii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: burned soil

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Oceanibaculum nanhaiense

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National University of Singapore (NUS)


ncbi_organism_name: Bifidobacterium mongoliense

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 230

ncbi_submitter: SC


ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: lung sputum

ncbi_submitter: FIOCRUZ


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Microcystis aeruginosa P_MICR

ncbi_submitter: University of Utah


ncbi_isolation_source: metagenome

ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: University of Queensland


ncbi_country: Peru: Lima

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Naval Research Laboratory


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Stenotrophomonas cyclobalanopsidis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Biomin Research Center


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile Y401

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Chile: Lomas Bayas

ncbi_isolation_source: Atacama Desert

ncbi_organism_name: Micromonospora ureilytica

ncbi_submitter: Newcastle University


ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Fluviicola sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Sulfuriflexus sp.

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Veillonella tobetsuensis


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: University of California, Berkeley


ncbi_country: South Africa: Mount Gilboa

ncbi_isolation_source: Floral nectar

ncbi_organism_name: Rosenbergiella australiborealis

ncbi_submitter: Complutense University of Madrid


ncbi_country: Norway

ncbi_organism_name: Escherichia coli

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Portugal

ncbi_organism_name: Caldimonas thermodepolymerans

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Germany

ncbi_isolation_source: otitis externa

ncbi_organism_name: Arcanobacterium canis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Canada: Toronto

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University College Cork


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: bacterium

ncbi_submitter: Northeastern University


ncbi_strain_identifiers: OSS 621

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Salmonella sp. SKLX109588

ncbi_submitter: Zhejiang university


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chifeng Center for Disease Control and Prevention


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: University of Wyoming


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Pelagibius sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium longum subsp. suis

ncbi_submitter: University of Parma


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptococcus pyogenes serotype M18

ncbi_submitter: IZLSLER


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: freshwater MAG --- B4coas_bin-0458

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Ohio

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: The Ohio State University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Kopperamanna; South Australia

ncbi_isolation_source: Artesian bore water

ncbi_organism_name: Anoxybacillus sp. EFIL

ncbi_strain_identifiers: EFIL

ncbi_submitter: Institute for Applied Ecology - University of Canberra


ncbi_country: China: Jinan

ncbi_organism_name: Streptomyces clavuligerus

ncbi_submitter: Shandong First Medical University


ncbi_country: Japan

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Toho University


ncbi_country: Mexico

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Cyanobium sp.

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_country: Denmark

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Pseudoclavibacter caeni

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_isolation_source: Clinical; cystic fibrosis patient

ncbi_organism_name: Burkholderia latens

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Chthoniobacter sp.

ncbi_submitter: EPFL


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: King Abdulaziz University


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Streptococcus agalactiae LMG 14609

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_country: South Korea: Sangju-si; Gyeongsangbuk-do

ncbi_isolation_source: soil

ncbi_organism_name: Brevibacillus antibioticus

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Desulfobulbaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Boston

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Brigham & Women's Hospital


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Italy: Florence

ncbi_isolation_source: pharyngeal swab

ncbi_submitter: University of Trento


ncbi_country: Greenland

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas sp. S409

ncbi_submitter: Technical University of Denmark


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_isolation_source: in vitro laboratory


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Clostridioides sp. GD02376

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_assembly_level: Chromosome

ncbi_country: Poland: Kielce

ncbi_isolation_source: hospital

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Jan Kochanowski University


ncbi_country: Japan:Chiba; Mobara

ncbi_organism_name: Streptomyces tubercidicus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: University of Chicago


ncbi_country: Germany: Frankfurt am Main

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: China: Hangzhou

ncbi_isolation_source: bile

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College


ncbi_country: Pacific Ocean: Juan de Fuca Ridge

ncbi_isolation_source: sample M10 deep-sea hydrothermal sulfide from chimney

ncbi_organism_name: Parcubacteria group bacterium M10-OD1-1

ncbi_submitter: HKUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium M10-OD1-1


ncbi_country: China

ncbi_isolation_source: cecum

ncbi_submitter: Nanjing agricultural university


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: The German Federal Institute for Risk Assessment (BfR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7)


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: EMG


ncbi_organism_name: Paenibacillus tundrae

ncbi_submitter: Zhejiang University of Science and Technology


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Pakistan

ncbi_isolation_source: rectal swab

ncbi_submitter: Cardiff University


ncbi_submitter: University of Georgia


ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Uganda: Mbararam

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Bacteroides uniformis dnLKV2


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2011EL-2107


ncbi_country: Turkey

ncbi_isolation_source: abscess

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University of Calgary


ncbi_organism_name: Neglectibacter timonensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: University Hospital Center and University of Lausanne


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Monoglobales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: China Jiliang University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Saint-Louis Hospital


ncbi_country: Arctic Ocean: Beaufort Sea

ncbi_isolation_source: marine waters

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Concordia University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 672

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Pseudomonas capeferrum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Kenya: Kakamega

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Mozambique: Manhica

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Japan

ncbi_organism_name: Faecalicatena contorta

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: India: Bhavnagar

ncbi_isolation_source: Alang ship breaking yard

ncbi_organism_name: Paenibacillus sp. DMB20

ncbi_submitter: Sardar Patel Univewrsity


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Candidatus Brocadia sinica

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__Candidatus Brocadia sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__Candidatus Brocadia sinica


ncbi_assembly_name: Rumen uncultured genome RUG11850

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Sutcliffiella horikoshii

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: USA: South Dakota

ncbi_isolation_source: Bioreactor

ncbi_organism_name: Sphingomonas sp. TPD3009

ncbi_submitter: MR DNA


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Agharkar Research Institute


ncbi_organism_name: Alicyclobacillus herbarius DSM 13609

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly


ncbi_isolation_source: intestinal content

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: ChinaCDC


ncbi_country: Austria

ncbi_isolation_source: milk sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: New England Biolabs


ncbi_isolation_source: ocean

ncbi_organism_name: Prochlorococcus marinus CUG1417

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: plant core


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: IHU Mediterranee Infection


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_isolation_source: pharynx

ncbi_organism_name: Mannheimia cairinae

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Institute of Animal Husbandry and Veterinary, Hubei Academy of Agricultural Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: isolated from patient

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Segatella maculosa OT 289

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Segatella;s__Segatella maculosa;x__Segatella maculosa OT 289


gtdb_type_species_of_genus: t

ncbi_country: China

ncbi_isolation_source: Sea water (sand filtered); China; Hong Kong

ncbi_organism_name: Owenweeksia hongkongensis DSM 17368

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Owenweeksiaceae;g__Owenweeksia;s__Owenweeksia hongkongensis;x__Owenweeksia hongkongensis DSM 17368


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Celeribacter marinus

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Lund University


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-0733

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: FL

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: Russia: Moscow

ncbi_isolation_source: food processing environment in the restaurant

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: Human fecal samples

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: microbial pathogenic ecology group


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for medical research


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Respiratory tract secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H3004


ncbi_country: China: Sichuang

ncbi_isolation_source: aquarium water

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Qinghai

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Samoa

ncbi_organism_name: Marinoscillum furvescens DSM 4134

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Reichenbachiellaceae;g__Marinoscillum;s__Marinoscillum furvescens;x__Marinoscillum furvescens DSM 4134


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: EMG


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: Mexico: Churince hydrological system; Cuatro Cienegas; Coahuila

ncbi_isolation_source: water from the Churince hydrological system

ncbi_organism_name: Micrococcus sp. CH3

ncbi_submitter: CINVESTAV-Langebio


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidade do Estado do Rio de Janeiro


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: duck meat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: National Center for Food Safety Risk Assessment


ncbi_country: Costa Rica:Puntarenas

ncbi_organism_name: Francisella marina

ncbi_submitter: University of California-Davis


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Candidatus Treponema excrementipullorum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Calgary


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Nagoya University


ncbi_isolation_source: wound swab

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Shigella flexneri K-304

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: Indian Ocean

ncbi_isolation_source: Deep-sea sediments

ncbi_organism_name: Rheinheimera aquimaris

ncbi_submitter: Third Institute of Oceanography,National Oceanic Adminisstration


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_strain_identifiers: CEMTC 3664

ncbi_submitter: Institute of Chemical Biology and Fundamental Medicine- SB RAS


ncbi_isolation_source: Blood culture

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Geneva University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Lu'an People's Hospital


ncbi_country: Singapore

ncbi_isolation_source: Farm water

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Augustenborg


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Spain: Granada

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Seville


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vibrio diazotrophicus

ncbi_submitter: universite de bretagne occidentale


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_organism_name: Bacillus cereus group sp. Bce002

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bce002


ncbi_organism_name: Streptomyces racemochromogenes

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: Candidatus Poriferihabitaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Bern


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Vircell S.L.


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Firmicutes bacterium CAG:95

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:95


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter cloacae complex sp. SHL005

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. SHL005


ncbi_country: China: Shanghai

ncbi_isolation_source: S2-enrichment culture from tap water-filter-nitrite

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Fudan University


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Sydney


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Kandleria sp. UBA3840

ncbi_submitter: University of Queensland


ncbi_organism_name: Aerococcus suis

ncbi_submitter: University of Minnesota


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Bern


ncbi_country: Brazil: Belem

ncbi_submitter: LNCC


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: Sweden: Boras

ncbi_isolation_source: blood

ncbi_organism_name: Capnocytophaga canis

ncbi_submitter: Genomic Research Laboratory


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_organism_name: Mycobacterium sp. GA-1999

ncbi_submitter: JCVI


ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Distal colon


ncbi_country: United Kingdom:Aberdeen

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0730

ncbi_submitter: Broad Institute


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: soil

ncbi_organism_name: Xanthomonas campestris JX

ncbi_strain_identifiers: JX

ncbi_submitter: Shanghai Jiao Tong University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Candidatus Mesenet;x__unclassified Candidatus Mesenet;s__Candidatus Mesenet endosymbiont of Agriotes lineatus


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Anaplasma marginale str. Puerto Rico

ncbi_strain_identifiers: Puerto Rico

ncbi_submitter: Washington State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Anaplasma;s__Anaplasma marginale;x__Anaplasma marginale str. Puerto Rico


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Alistipes inops

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_submitter: Brighton and Sussex Medical School


ncbi_country: Spain: Malaga

ncbi_isolation_source: melon rhizosphere

ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Malaga


ncbi_country: Tunisia

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: ANSES


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Russia: Moscow

ncbi_isolation_source: bronchoalveolar lavage (BAL)

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Poultry Health Services


ncbi_assembly_name: freshwater MAG --- KR3_bin-0703

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Ausgem


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Centers for Disease Control, Taiwan


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Taibaiella sp. KBW10

ncbi_submitter: Tufts University


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: INRAE


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Sphingomonas sp.


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Nanjing University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Trinickia sp.


ncbi_organism_name: Romboutsia ilealis


ncbi_country: China: Jilin

ncbi_organism_name: Lactobacillus sp. W8174

ncbi_submitter: China Agricultural University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Korea

ncbi_organism_name: Jeotgalicoccus psychrophilus DSM 19085

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: skin swab cheek

ncbi_organism_name: Corynebacterium kefirresidentii

ncbi_submitter: Aarhus University


ncbi_country: India: Meghalaya

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: United Kingdom: Scotland; Irvin

ncbi_isolation_source: foam; aerotenk of treatment facilities with use of active silt

ncbi_organism_name: Rhodococcoides fascians

ncbi_strain_identifiers: IEGM 712

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Yantai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_isolation_source: soil

ncbi_organism_name: Caballeronia novacaledonica

ncbi_submitter: Department of Engineering, Graduate School of Integrated Science and Technology, Shizuoka University


ncbi_assembly_name: Rumen uncultured genome RUG14683

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Taiwan

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: kaohsiung medical university


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: National Kaohsiung Normal University


ncbi_isolation_source: human gut

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: SC


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Canada: Ontario

ncbi_isolation_source: ANIMAL-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20130347


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Tanwan

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Noviherbaspirillum malthae

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Liverpool School of Tropical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: EMG


ncbi_organism_name: Salmonella sp. SAL04149

ncbi_submitter: Zhejiang university


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: The Ohio State University


ncbi_organism_name: Shewanella mangrovisoli

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Nonomuraea sp. H19

ncbi_submitter: Northwest Minzu University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Cytobacillus oceanisediminis

ncbi_submitter: University of Cologne - Institute for Plant Sciences


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: University hospital Lubeck


ncbi_submitter: Miguel Servet University Hospital


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: chicken meat

ncbi_submitter: Division of Biomedical Food Research, National Institute of Health Sciences, NIHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Caldilineaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Caldilineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_submitter: Stanford University


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Providencia heimbachae

ncbi_submitter: University of Georgia


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Gallionellaceae bacterium UBA6222

ncbi_submitter: University of Queensland


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for medical research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: genital

ncbi_organism_name: Staphylococcus sp. HMSC076B11

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli KTE106

ncbi_submitter: Broad Institute


ncbi_country: Germany: Freising

ncbi_isolation_source: MAP minced beef

ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Tree bark

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: Faculty of pharmaceutical science, Chulalongkorn University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_country: Saudi Arabia: Jeddah

ncbi_isolation_source: desert soil

ncbi_organism_name: Sphingomonas jeddahensis

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: Salmonella sp. NW475

ncbi_submitter: Sichuan University


ncbi_organism_name: Paludibacter sp.

ncbi_submitter: University of Waterloo


ncbi_country: Italy: Trento; Comano Thermal Spring

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: University of Trento


ncbi_isolation_source: trachea

ncbi_organism_name: Mycoplasmoides gallisepticum


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: USA: Kansas

ncbi_isolation_source: Coalvale silty clay

ncbi_organism_name: Kocuria rosea

ncbi_submitter: Pittsburg State University


ncbi_assembly_name: Rumen uncultured genome RUG12135

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: SC


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_assembly_name: freshwater MAG --- Erken-D3_bin-0935

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of South Africa


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Aliarcobacter thereius

ncbi_submitter: Quadram Institutte


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-3-6

ncbi_submitter: Curtin University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Japan: Troitza Bay

ncbi_isolation_source: sea urchin

ncbi_organism_name: Echinimonas agarilytica

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-4935

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Oxalobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Dubosiella newyorkensis


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Centro de Astrobiologia


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: traditional dairy products

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: State Key Laboratory of Dairy Biotechnology, Technology Center of Bright Dairy & Food Co., Ltd,China


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: USA

ncbi_organism_name: Bordetella hinzii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Ascidiaceihabitans sp.


ncbi_organism_name: Faecalibacterium sp. CAG:1138

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Scottish Marine Association for Marine Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;x__Chryseobacterium group;g__Chryseobacterium;s__Chryseobacterium aquaticum;sb__Chryseobacterium aquaticum subsp. greenlandense


ncbi_country: France: Courbevoie

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: UNICAMP


ncbi_organism_name: Mycoplana dimorpha

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Praj Matrix R and D Center


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Neisseria lisongii

ncbi_submitter: China CDC


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Kocuria rosea

ncbi_submitter: SC


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Microbacterium sp. ISL-59

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Limnospira platensis C1

ncbi_submitter: King Mongkut's University of Technology Thonburi, Thailand


ncbi_submitter: University of Copenhagen


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Italy

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Australia: Blackwood River

ncbi_isolation_source: freshwater

ncbi_organism_name: Nodularia spumigena CS-587/03

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: Ireland

ncbi_isolation_source: Brain; aborted fetus

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Universitat Rovira i Virgili


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: drinking water

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Rahnella;s__Rahnella aquatilis;x__Rahnella aquatilis CIP 78.65 = ATCC 33071


ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Anderseniibacteriota;x__unclassified Candidatus Anderseniibacteriota;s__Candidatus Anderseniibacteriota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus intestinalis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Algeria: Oran

ncbi_isolation_source: soil collected in a potato field

ncbi_organism_name: Glycomyces algeriensis

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: blood and spinal fluid

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Chiba University


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Italy: Ittiri

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Caldicoprobacterales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: New York City

ncbi_isolation_source: wood

ncbi_submitter: University of Queensland


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Poland: Konskie

ncbi_isolation_source: urine sample

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Jan Kochanowski University


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-4060

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_submitter: BILS


ncbi_country: France

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: raw milk for cow(Bos taurus)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Meiji Co., Ltd


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Segatella sp.


ncbi_organism_name: Falsiroseomonas sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 6382

ncbi_submitter: University of Warwick


ncbi_submitter: North South University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Microbacterium sp. DT81.1

ncbi_submitter: University of Liege


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pseudomonas sp. xss_2

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: uncultured bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp2 AA85

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp2 AA85

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Mameliella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: Arthritic joint

ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus porcorum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Wuerzburg


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Zhejiang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Experimental Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Guam: Western Shoals; Apra Harbor

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: University of California, San Diego

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_organism_name: Roseovarius sp. UBA3070

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Salmonella sp. YP67-1

ncbi_submitter: Yangzhou University


ncbi_country: Canada: Quebec

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Pandoraea pneumonica

ncbi_submitter: Hainan General Hospital


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: South Korea: Cheonan

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: China: Wuyi; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: South china normal university


ncbi_country: Canada: Vancouver

ncbi_isolation_source: maternal vaginal swab fluid of a 43 year-old woman on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Sphingomonas sp. Leaf38

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: shrimp paste

ncbi_organism_name: Allobacillus halotolerans

ncbi_submitter: Zymo Research Corporation


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cold seep

ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan

ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Toho University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: eye

ncbi_organism_name: Pseudomonas aeruginosa BL24

ncbi_submitter: Broad Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Denmark: Slagelse

ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_isolation_source: feces

ncbi_organism_name: Thomasclavelia cocleata


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 80

ncbi_strain_identifiers: CHS 80

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 80


ncbi_organism_name: Escherichia coli

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_isolation_source: G-tube site

ncbi_organism_name: Pseudomonas aeruginosa BWHPSA010


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Romania: Bucharest

ncbi_isolation_source: Wastewater Effluent

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: Atlantic Ocean

ncbi_isolation_source: intestine

ncbi_organism_name: Pseudoalteromonas sp. APC 3224

ncbi_submitter: University College Cork


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Pseudobutyrivibrio sp.

ncbi_submitter: EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Cardinium hertigii

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Amoebophilaceae;g__Candidatus Cardinium;s__Candidatus Cardinium hertigii


ncbi_country: United Kingdom

ncbi_submitter: United State Department of Agriculture


ncbi_country: Poland: Kolobrzeg

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus sp. 2106

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Erysipelotrichaceae bacterium I46

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: chicken litter

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Klebsiella sp. 79945

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Brazil: Carolina; Maranhao

ncbi_isolate: Desfum bin_4_GBBB08

ncbi_isolation_source: non-axenic (unialgal) sample in BG-11 medium

ncbi_organism_name: Hydrogenophaga sp.

ncbi_strain_identifiers: Desfum bin_4_GBBB08

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Alcaligenes sp. SDU_A2

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_organism_name: Candidatus Scatomorpha merdigallinarum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha merdigallinarum


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01748

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01748


ncbi_country: Kenya: Kajiado County

ncbi_isolation_source: termite gut

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: qseBC mutant

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_country: China

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S041

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S041


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_country: Brazil

ncbi_isolation_source: artisanal cheese

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: School of Pharmaceutical Sciences


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chthonomonas sp. UBA2424

ncbi_submitter: University of Queensland


ncbi_country: Japan: Aburatsubo Inlet; Kanagawa Prefecture

ncbi_isolation_source: surface saline water

ncbi_organism_name: Pseudoalteromonas sp. MSK9-3

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Gammaproteobacteria bacterium DTU040

ncbi_submitter: Technical University of Denmark


ncbi_country: Spain: Galicia

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: University of Santiago de Compostela


ncbi_country: USA: West Virginia

ncbi_organism_name: Malaciobacter marinus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Kansas

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Colorado State U


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nagoya University