ncbi_country: Portugal

ncbi_isolation_source: blood

ncbi_organism_name: Citrobacter youngae

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Enterobacteriaceae bacterium


ncbi_assembly_level: Contig

ncbi_country: Russia: Sochi

ncbi_isolation_source: hot water systems

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: RARI


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acididesulfobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acididesulfobacter;x__unclassified Candidatus Acididesulfobacter;s__Candidatus Acididesulfobacter sp.


gtdb_representative: t

ncbi_isolation_source: tundra soil

ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: University of Helsinki


ncbi_country: New Zealand: Te Puke

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: Faecalibacterium sp.


ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Micromonospora sp. NPDC050417

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_level: Complete Genome

ncbi_country: Kenya: Kisumu

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_country: Japan

ncbi_isolation_source: water

ncbi_organism_name: Roseateles depolymerans

ncbi_refseq_category: reference genome

ncbi_submitter: KCTC (Korean Collection for Type Cultures)


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Meijo University faculty of pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Prevotella nigrescens

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Serratia fonticola

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Neglectibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Lewinellaceae bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Lille

ncbi_isolation_source: trachea


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli IS25

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: CA; farm #1

ncbi_organism_name: Campylobacter jejuni subsp. jejuni 1928

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 1928


ncbi_country: China: Qingdao

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_isolation_source: Superficial abscess on skin; 12-year old ewe

ncbi_organism_name: Streptococcus ovis DSM 16829

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ovis;x__Streptococcus ovis DSM 16829

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Trichlorobacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene


ncbi_organism_name: Evtepia sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Roseobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Streptomyces sp. NPDC005727

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany

ncbi_isolation_source: chick-box-paper

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Freie Universitaet Berlin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Washington; Soap Lake

ncbi_organism_name: Thiomicrospira microaerophila


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Battelle Memorial Institute


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Campylobacter insulaenigrae

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Spain: Granada

ncbi_isolation_source: root nodule

ncbi_organism_name: Agrobacterium leguminum

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_country: China:Guangzhou city

ncbi_isolation_source: dyed contaminated landsoil

ncbi_organism_name: Rhodococcus ruber

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: USA: Wyoming

ncbi_isolation_source: top 2mm of microbial mat from collected 51-61 deg C temperature site in the Octopus Spring effluent channel; Yellowstone National Park

ncbi_organism_name: Synechococcus sp. JA-3-3Ab

ncbi_submitter: TIGR


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Neisseria sp.


ncbi_assembly_level: Chromosome

ncbi_country: USA: Minnesota; Minneapolis

ncbi_isolation_source: male patient in 1988

ncbi_organism_name: Clostridioides difficile QCD-76w55

ncbi_submitter: McGill University


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged pork

ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. BY142LC

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BY142LC


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University,Nanchang University


ncbi_organism_name: Diaphorobacter nitroreducens


ncbi_organism_name: Micrococcaceae bacterium Sec5.1

ncbi_submitter: Universidad Autonoma de Chile


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV106

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Minnesota

ncbi_isolation_source: feces

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


gtdb_type_species_of_genus: t

ncbi_organism_name: Acholeplasma laidlawii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: Kenya

ncbi_isolation_source: MMUST Wastewater treatment plant

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: UPEC

ncbi_submitter: MMUST biological


ncbi_country: Tanzania

ncbi_isolation_source: Nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0528

ncbi_submitter: Broad Institute


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0909

ncbi_submitter: Texas A&M University


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. TH03

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Streptomyces sp. NPDC014803

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Sanya people's hospital


ncbi_organism_name: Prochlorothrix sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacillus cereus


ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Corynebacterium casei

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_assembly_name: Rumen uncultured genome RUG11211

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Estonia

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: marine sediment

ncbi_organism_name: Salegentibacter mishustinae

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_submitter: Uppsala University


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_isolation_source: Tissue

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Northumbria University


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_submitter: Inha University


ncbi_organism_name: Streptococcus pyogenes ABC020046230

ncbi_submitter: Broad Institute


ncbi_country: Suriname: Paramaribo

ncbi_isolation_source: Perineum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: India: Surda Copper Mine; Ghatsila; East Singhbhum

ncbi_organism_name: Micrococcus yunnanensis

ncbi_submitter: The University of Burdwan


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1181

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1181


ncbi_isolation_source: Faeces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: The BioArte Ltd


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium acidiphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Mycobacterium tuberculosis H37Ra

ncbi_submitter: San Diego State University


ncbi_organism_name: Enterococcus faecalis M7

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Montreal

ncbi_isolation_source: Hospital sink

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Toho University


ncbi_country: Pakistan: Faisalabad

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Nitratireductor rhodophyticola

ncbi_submitter: Gloucester Marine Genomics Institute


ncbi_country: Australia: Queensland; Darling Downs

ncbi_isolation_source: plant matter [ENVO:01001121]

ncbi_organism_name: Robbsia andropogonis

ncbi_submitter: The University of Queensland


ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Enterococcus sp. HMSC073E08

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_country: Chile: Santiago

ncbi_isolation_source: urine

ncbi_submitter: Universidad del desarrollo


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841


ncbi_country: USA: Oregon

ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Oregon State University


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Sydney

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_country: China: Ningbo

ncbi_isolation_source: secretion

ncbi_submitter: Ningbo First Hospital


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. syringae B64

ncbi_submitter: Institute of Plant Biology, University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae;x__Pseudomonas syringae pv. syringae B64


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Finegoldia magna


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H70826

ncbi_submitter: Broad Institute


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_country: India: Punjab

ncbi_organism_name: Brucella abortus LMN2

ncbi_submitter: Madurai Kamaraj University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China

ncbi_isolation_source: surface of laminaria

ncbi_organism_name: Winogradskyella sp. SM1960

ncbi_submitter: Shandong University Qingdao Campus


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Universiti Tunku Abdul Rahman


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Environment

ncbi_submitter: University of Pittsburgh


ncbi_assembly_name: Rumen uncultured genome RUG11542

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Microbacterium aurantiacum

ncbi_submitter: BioPS Co., Ltd.

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: mouse gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;x__unclassified Acidimicrobiia;s__Acidimicrobiia bacterium BACL6 MAG-120322-bin79


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Crocosphaera sp.

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Qingdao

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shandong University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Ecuador: El Empalme

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Guayaquil


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Prevotella pallens

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Universidad de Leon


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolate: metabat2_pooled_metaflye.1163 MAG

ncbi_strain_identifiers: metabat2_pooled_metaflye.1163 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_assembly_name: Rumen uncultured genome RUG11991

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: Nostoc CCY 9926

ncbi_organism_name: Nostoc sp. PCC 9305

ncbi_strain_identifiers: Nostoc CCY 9926

ncbi_submitter: royal netherlands institute for sea research (nioz)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;s__Nostoc sp. PCC 9305


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Parasphingopyxis sp.

ncbi_submitter: Jadavpur University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Firmicutes bacterium CAG:341

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:341


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: East China Normal University


ncbi_country: Brazil: Belem

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: LNCC


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Marinomonas sp. GJ51-6

ncbi_submitter: Chung-Ang university


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: China: Qinghai Province

ncbi_isolation_source: feces

ncbi_organism_name: Arthrobacter sunyaminii

ncbi_submitter: China CDC


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_assembly_name: Rumen uncultured genome RUG10698

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolate: metabat2_6737_HOM_CTRL_hifiasm.752 MAG

ncbi_organism_name: Candidatus Limivicinus faecipullorum

ncbi_strain_identifiers: metabat2_6737_HOM_CTRL_hifiasm.752 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;s__Candidatus Limivicinus faecipullorum


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: throat swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AMR research center, National Institute of Infectious Diseases


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Arizona

ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: INRA


ncbi_country: Canada

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Laboratoire de sante publique du Quebec


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Nizhny Novgorod scientific and research institute of epidemiology and microbiology name acad.I.N. Bl


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Centers for Disease Control and Prevention Enteric Diseases Laboratory Branch


ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides fragilis str. S6L3

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. S6L3


ncbi_country: USA: Louisiana

ncbi_isolation_source: groundwater

ncbi_organism_name: Azospira restricta

ncbi_submitter: Louisiana State University


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Treponema sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia: Victoria

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: GA

ncbi_isolation_source: stream

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_assembly_name: Salmonella enterica CVM N51286 v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Germany

ncbi_isolate: Clinical isolate

ncbi_isolation_source: Wound infection

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Clinical isolate

ncbi_submitter: JUSTUS LIEBIG UNIVERSITAT


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: terrestrial

ncbi_organism_name: Staphylococcus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterovibrio norvegicus

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_organism_name: Variovorax atrisoli

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Japan

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: SP

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR324 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;x__environmental samples;s__uncultured SAR324 cluster bacterium


ncbi_country: Poland: North-East

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Medical University of Bialystok


ncbi_country: France

ncbi_isolation_source: Corse; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California, Davis


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Lachnospiraceae bacterium AM48-27BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1016

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium GW2011_GWD1_42_70


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Milk

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 25307_3

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Campbelliibacteriota;s__Candidatus Campbellbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_35_52


ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Porphyromonadaceae bacterium UBA7146

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Tamazula River; Las Peitas

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_isolation_source: total DNA from 20 embryos

ncbi_organism_name: Wolbachia pipientis

ncbi_submitter: MRC-UNIVERSITY OF GLASGOW CENTRE FOR VIRUS RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Oregon

ncbi_isolation_source: normally sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Research Institute


ncbi_isolation_source: artisanal lactic starter (Gruyere de Comte)

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 30

ncbi_submitter: Brigham Young University


ncbi_country: South Korea: Goheung

ncbi_isolation_source: daemi-jeot

ncbi_organism_name: Kushneria konosiri

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Netherlands

ncbi_isolation_source: cereals; cereal products; (fermented) breads; pasta and pastries

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: University of Groningen


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Phycicoccus sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Copenhagen


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: seawater

ncbi_organism_name: Rhodobacterales bacterium HKCCA1077

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_country: France: Besancon

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Trento


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: Brazil: Iranduba

ncbi_isolation_source: leaf litter

ncbi_organism_name: Oxalicibacterium faecigallinarum

ncbi_submitter: University of Sao Paulo


ncbi_country: United Arab Emirates: Coast of the Arabian Gulf

ncbi_isolation_source: non-axenic culture of diatom

ncbi_submitter: NYUAD


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Rochester


ncbi_assembly_name: IMG-taxon 2681813508 annotated assembly

ncbi_organism_name: Neptunomonas antarctica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shanghai Hongkou District Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Promicromonospora sp. NPDC052451

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC059008


ncbi_organism_name: uncultured Calditrichaceae bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Flavicella sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Aestuarium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces flavofungini

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Victoria

ncbi_isolation_source: modified atmosphere packaged beef

ncbi_organism_name: Brochothrix thermosphacta

ncbi_submitter: CSIRO Agriculture and Food; Food Safety and Stability Group


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Canada: Toronto

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Loyola University Chicago


ncbi_country: Ethiopia: Benishangul; Asosa; Bambasi

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Streptomyces sp. STD57

ncbi_submitter: Northeast Argriculture University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Sphingobium abikonense

ncbi_submitter: Xiamen University


ncbi_organism_name: Sneathiella glossodoripedis JCM 23214

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_assembly_name: Rumen uncultured genome RUG829

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Sterolibacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University College of Medicine


ncbi_country: USA: MN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: Italy: Rome

ncbi_isolation_source: poultry farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: United Arab Emirates

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Danish Technical University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Brachybacterium muris

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Luteococcus japonicus


ncbi_country: Germany: Berlin

ncbi_isolation_source: gastric antrum

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_organism_name: Vicingaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: RWTH Aachen University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Robertmurraya;s__Robertmurraya yapensis (ex Hitch et al 2024)


ncbi_organism_name: [Clostridium] innocuum


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS TMP-1

ncbi_isolation_source: activated sludge

ncbi_organism_name: Cyanobacteria bacterium SZAS TMP-1

ncbi_strain_identifiers: SZAS TMP-1

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium SZAS TMP-1


ncbi_organism_name: Hylemonella gracilis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: S. Gallicano Institute, IRCCS


ncbi_country: Japan: Okinawa

ncbi_isolate: MegNdeciBESST

ncbi_isolation_source: Algae

ncbi_strain_identifiers: MegNdeciBESST

ncbi_submitter: University of Liverpool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Candidatus Megaera;x__unclassified Candidatus Megaera;s__Candidatus Megaera endosymbiont of Nemacystus decipiens


ncbi_country: South Korea: Gyeonggi-do

ncbi_isolation_source: food service operation

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Korea Food Research Institute


ncbi_assembly_name: Rumen uncultured genome RUG14556

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Norway

ncbi_isolation_source: Ear secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: South Korea: Changwon; Gyeongsang province

ncbi_isolation_source: diseased rice

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Seoul National University


ncbi_country: Mexico

ncbi_isolation_source: stomach

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Spain: Sevilla

ncbi_isolation_source: soil

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Embrapa Soja


ncbi_country: Australia: Orpheus Island

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: USA: Massachusetts; Cape Cod National Seashore

ncbi_isolation_source: soil from cranberry bog

ncbi_organism_name: Pseudomonas sp. MWU12-2323

ncbi_submitter: Midwestern University


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P175P

ncbi_submitter: South China Agricultural University


ncbi_genome_category: derived from single cell

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rennes Hospital


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: feces

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: P118C P

ncbi_submitter: Imperial College London


ncbi_organism_name: Bradyrhizobium sp. cir1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: University of Chicago


ncbi_country: Peru

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 60:r:e,n,x,z15


ncbi_country: Slovenia

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: National laboratory for health, environment and food


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: USA: Seattle

ncbi_isolation_source: Airway secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SCH


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5309

ncbi_submitter: University of Queensland


ncbi_isolation_source: Soil

ncbi_organism_name: Burkholderia paludis

ncbi_submitter: LM-UGent


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus cereus group sp. Bc253

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bc253


ncbi_organism_name: Metamycoplasma salivarium

ncbi_submitter: Iwate Medical University


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: Hong Kong

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong University of Science and Technology


ncbi_country: Japan

ncbi_organism_name: Helicobacter suis

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Aphanizomenon flos-aquae FACHB-1265

ncbi_submitter: South China Normal University


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Algoriphagus sp. Y33

ncbi_submitter: FIRST INSTITUTE OF OCEANOGRAPHY, MNR


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Pseudomonas veronii

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Psychromonas sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Vibrio rarus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Brachybacterium sp. GCM10030267

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolate: AOP17_E1_surf _bin _5

ncbi_organism_name: Leuconostoc falkenbergense

ncbi_strain_identifiers: AOP17_E1_surf _bin _5

ncbi_submitter: Genoscope


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: bacterium

ncbi_submitter: Kiel University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Vibrio nereis

ncbi_submitter: EMG


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: uncultured Ignavibacterium sp.


ncbi_country: Haiti: Lassalle

ncbi_isolation_source: Water; Environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-163

ncbi_submitter: JCVI


ncbi_organism_name: Microcoleus sp. F8-D3

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: MO

ncbi_isolation_source: liver

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bredeney


ncbi_organism_name: Methylomonas sp. MV1

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Candidatus Ryanbacteria bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Ryaniibacteriota;x__unclassified Candidatus Ryanbacteria;s__Candidatus Ryanbacteria bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__environmental samples;s__uncultured candidatus Brocadiaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_4 depth 0-3 cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Russia: Moscow; Lake Hotontyn Nur; Mongolia

ncbi_isolation_source: enrichment culture from haloalkaline lake

ncbi_organism_name: Halorhodospira halophila


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 233


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Tennessee

ncbi_isolation_source: root

ncbi_organism_name: Chryseobacterium populi

ncbi_submitter: Oak Ridge National Lab


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;s__Candidatus Wolfebacteria bacterium CG_4_10_14_0_8_um_filter_39_64


ncbi_country: USA: AK

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia sp. MOD1-EC6158

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: INRA


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1389 from squamous cell carcinomas patient MST003

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_country: Guatemala

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Lake Washington

ncbi_organism_name: Methylotenera sp. 1P/1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus loxodontisalivarius


ncbi_isolation_source: human gut

ncbi_organism_name: Aeromonas caviae


ncbi_organism_name: Aliihoeflea sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Pelistega suis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bradyrhizobium sp. USDA 4538

ncbi_strain_identifiers: USDA 4538


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Elioraea sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Usitatibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Acinetobacter sp. ABJ-A23_2

ncbi_submitter: University of Abuja


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Cambodia: National Pediatric Hospital

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Armed Forces Research Institute of Medical Sciences (AFRIMS)


ncbi_organism_name: Thalassobaculaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_country: Japan: Showa

ncbi_isolation_source: oral

ncbi_organism_name: Campylobacter showae

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Segatella copri

ncbi_submitter: EMG


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Frischella perrara


ncbi_organism_name: Pseudoxanthomonas putridarboris

ncbi_submitter: Chungbuk National University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Streptomyces cacaoi

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Avelusimicrobium alvi

ncbi_submitter: EBI


ncbi_country: United Kingdom: Cambridge

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: FisD

ncbi_submitter: MRC Laboratory of Molecular Biology


ncbi_organism_name: Rubricoccaceae bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Salmonella sp. NW805

ncbi_submitter: Sichuan University


ncbi_organism_name: Saprospiraceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: BRAC University


ncbi_organism_name: Corynebacterium falsenii

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_organism_name: Corallococcus exercitus

ncbi_submitter: Shandong University


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas sp. IT-232MI5

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Paenibacillus macerans

ncbi_submitter: Tarim University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Faecalibacterium sp.


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: vaginal metagenome


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: South Korea

ncbi_isolation_source: Meju; fermented soybean brick

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Dongduk Women's University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Hopland; California

ncbi_isolation_source: 0.2 micron size-filtered soil effluent from rhizosphere-associated grassland soil

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Enterococcus faecalis EnGen0342

ncbi_submitter: Broad Institute


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Australia: Bundaberg

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: La Trobe University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: ProBone


ncbi_isolation_source: Cultivated yellowtail

ncbi_organism_name: Photobacterium damselae

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil

ncbi_isolation_source: Cold chicken

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Germany

ncbi_isolation_source: water sample for medical leeches

ncbi_organism_name: Erysipelothrix aquatica

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: South Korea: Seoul

ncbi_isolation_source: evaporation core

ncbi_organism_name: Deinococcus multiflagellatus

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: corn dogs

ncbi_organism_name: Listeria monocytogenes


ncbi_country: USA: Texas

ncbi_isolation_source: nasal

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Svalbard

ncbi_isolation_source: spleen

ncbi_organism_name: Brucella pinnipedialis

ncbi_submitter: INRAE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_submitter: Georg-August-University of Goettingen, Genomics and Applied Microbiology, Göttinger Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella;s__Legionella oakridgensis;x__Legionella oakridgensis ATCC 33761 = DSM 21215


ncbi_organism_name: bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Madurai Kamaraj University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Catenibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pyramidobacter piscolens

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Korea: Geoje Island

ncbi_isolation_source: sea sparkle bloom region

ncbi_organism_name: Sulfitobacter noctilucicola

ncbi_submitter: Yonsei University


ncbi_organism_name: Streptomyces griseoviridis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: salt crust

ncbi_organism_name: Cyanobacteria bacterium QS_9_48_30

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium QS_9_48_30


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Rickettsiella isopodorum

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Mesorhizobium sp. M0085

ncbi_submitter: Washington State University


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: HUN-REN Biological Research Centre, Szeged


ncbi_submitter: ECBC


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Methylorubrum podarium

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Bacteroides uniformis dnLKV2


ncbi_country: USA

ncbi_isolation_source: L3 Larvae

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Vanderbilt University


ncbi_organism_name: Evtepia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Colombia: Cali

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: China:Zhejiang maternal and child health hospital

ncbi_isolation_source: healthy infant fecal samples

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Zhejiang Gongshang University


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EBI


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Sweden

ncbi_isolation_source: Oral cavity

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: TAILORED-Treatment project

ncbi_type_material_designation: assembly designated as neotype


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaerostipes sp.


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_assembly_name: freshwater MAG --- Loclat_bin-01732

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: uncultured Sutterella sp.


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9117-2

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnospiraceae bacterium UBA7725

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Wilmar; MN

ncbi_isolation_source: woodchips

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: University of Minnesota


ncbi_organism_name: Stenotrophomonas muris

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Falkowella caecavicola

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Falkowella;s__Candidatus Falkowella caecavicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Falkowella;s__Candidatus Falkowella caecavicola


ncbi_organism_name: Xanthomonas boreopolis

ncbi_submitter: CSIR-Indian Institute of Toxicology Research


ncbi_organism_name: Bacteroides faecis MAJ27

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of Alabama at Birmingham


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: lung

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Acinetobacter guillouiae

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio brasiliensis

ncbi_submitter: NSW Department of Primary Industries


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: Phaeodactylibacter xiamenensis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 40cm depth; pre rain

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__unclassified Gemmatimonadota;s__Gemmatimonadetes bacterium 13_1_40CM_70_15


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: University of Bologna


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Vibrio sp. zbq_19

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Prevotella sp.


ncbi_submitter: The University of Texas at Dallas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. W3110


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Elusimicrobia bacterium GWF2_62_30

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;x__unclassified Elusimicrobiota;s__Elusimicrobia bacterium GWF2_62_30


ncbi_country: China:Yunnan province

ncbi_isolation_source: native outdoor hot spring sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Fudan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Halanaerobiaceae bacterium


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Sodaliphilus sp.


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: North Osetia; Caucasus

ncbi_organism_name: Bosea vaviloviae

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_country: Pakistan: Isb

ncbi_isolation_source: probiotic supplement

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: NIBGE


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: seawater from Yellow Sea

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: UANTW


ncbi_isolation_source: Distal colon

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Methylophilus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Arkansas

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: China Agricultural University


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Streptococcus vicugnae

ncbi_submitter: University of Florida


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_organism_name: bacterium


ncbi_organism_name: Streptomyces sp. FL06-04B

ncbi_submitter: Oregon State University


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Beside Boulder

ncbi_submitter: University of Duisburg-Essen


ncbi_organism_name: Acinetobacter baylyi

ncbi_submitter: Guangxi University


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium butyricum;x__Clostridium butyricum E4 str. BoNT E BL5262


ncbi_country: Switzerland

ncbi_isolation_source: chicken cecum

ncbi_submitter: ETH Zurich


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Duke University


ncbi_organism_name: Oxalicibacterium flavum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: New Jersey

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces luomodiensis

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences