ncbi_organism_name: Actinopolyspora lacussalsi

ncbi_submitter: DOE Joint Genome Institute


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: EMG


gtdb_representative: t

ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea: Gimcheon

ncbi_isolation_source: tissue

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Actinopolymorphaceae bacterium

ncbi_submitter: Monash University


ncbi_country: China: Jiangsu

ncbi_isolation_source: anaerobic fermentation tank

ncbi_organism_name: Achromobacter denitrificans

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Wound Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_strain_identifiers: TEF 7

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agama


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LHUB-ULB


ncbi_assembly_level: Scaffold

ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: BGI


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Ireland

ncbi_isolation_source: Pig environment

ncbi_organism_name: Yersinia hibernica

ncbi_refseq_category: reference genome

ncbi_submitter: University College Dublin

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Health Canada


ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_country: Peru

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Cepheid


ncbi_organism_name: Lentibacillus populi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Hanamia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Brevundimonas sp. 1P8-tot-C-2

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG282

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus gasseri


ncbi_country: United Kingdom: Gloucestershire

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in a breeding trial plot

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jeonbuk National University


ncbi_country: China: Jinan

ncbi_isolation_source: Catheter

ncbi_organism_name: Escherichia coli

ncbi_submitter: University College London (UCL)


ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Public Health Ontario


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter ruhlandii

ncbi_strain_identifiers: CCL 134

ncbi_submitter: Universidad de Buenos Aires


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0302308.11

ncbi_submitter: IGS


ncbi_country: USA: MA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Paenibacillus sp. FSL R5-0749

ncbi_submitter: Penn State


ncbi_organism_name: Acinetobacter baumannii AB_TG27331

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: Germany: Berlin

ncbi_isolation_source: blood

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Seawater (1m depth)

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_country: Argentina

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Wenzhou Medical University


ncbi_country: Thailand: Chatuchak

ncbi_isolation_source: fresh seafood sold at markets and supermarkets located in Bangkok; Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Japan

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Bacteriology, Graduate School of Medicine, Gunma University


ncbi_isolation_source: Sea water (open ocean)

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Microcoleus sp.

ncbi_submitter: EPFL


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 8963

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Animal - Chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20092320


ncbi_organism_name: Castellaniella defragrans

ncbi_submitter: Technische Universiteit Delft


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_isolation_source: deep sea sediment from the Atlantic Ocean

ncbi_organism_name: Actibacterium atlanticum

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_submitter: University of Waterloo


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: Feces

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Florida


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany: Sylt

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Flavobacteriales bacterium UBA2798

ncbi_submitter: University of Queensland


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Fusobacterium necrophorum D12

ncbi_submitter: Broad Institute


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Norway

ncbi_isolation_source: caecum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Norwegian Veterinary Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Microbacterium laevaniformans

ncbi_submitter: University of Florence


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas sp. yb_9

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Salmonella sp. ZJHZ21_0184

ncbi_submitter: Zhejiang university


ncbi_organism_name: Metamycoplasmataceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: USDA


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Psychrobacter sp. AOP5-CZ1-12

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_isolate: AOP24_C2_surf _bin _11

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP24_C2_surf _bin _11

ncbi_submitter: Genoscope


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Novome Biotechnologies


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Ocean University of China


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Hungary: Kecskemt

ncbi_isolation_source: Anaerobic sludge from Kecskemt Biogas Plant

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacillales bacterium UBA5913

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Ares Genetics


ncbi_organism_name: uncultured Nocardioides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Hyphomonas pacifica

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_country: South Korea

ncbi_isolation_source: freshwater

ncbi_organism_name: Flavihumibacter profundi

ncbi_submitter: Inha University


ncbi_country: USA: Calhoun; Tennessee

ncbi_organism_name: Sphingobium sp. B2D3A

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Thailand

ncbi_isolation_source: Sputum from a relapse melioidosis infection

ncbi_organism_name: Burkholderia pseudomallei 354e

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Aarhus University


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Mannheimia haemolytica M42548

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: CPBF 426

ncbi_organism_name: Xanthomonas arboricola pv. juglandis

ncbi_strain_identifiers: CPBF 426

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Icahn School of Medicine


ncbi_country: Thailand: Krabi

ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces sp. C1-2

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: arsenic-rich groundwater

ncbi_organism_name: Achromobacter sp. KAs 3-5

ncbi_strain_identifiers: KAs 3-5

ncbi_submitter: Indian Institute of Technology Kharagpur


ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Methylotenera sp.


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gemmatimonadales bacterium UBA3501

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EBI


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Fusobacterium hwasookii

ncbi_strain_identifiers: KCOM 1249

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Switzerland: Lake Constance

ncbi_organism_name: Synechococcus sp. BO 8801

ncbi_submitter: University of Bristol


ncbi_country: USA: Durham; NH; Adams Point

ncbi_isolation_source: root nodule

ncbi_organism_name: Thiopseudomonas sp. 4R-3cl

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_submitter: This work was funded by the University Paris-Sud, France. R.A.B., L.D., and T.N. are members of the Laboratory of Excellence in Research on Medication and Innovative Therapeutics (LERMIT), supported by a grant from the French National Research Agency (ANR-10-LABX-33). This work was also supported by the “PHC Utique” program of the French Ministry of Foreign Affairs, the French Ministry of Higher Education, Research and Innovation and the Tunisian Ministry of Higher Education and Scientific Research under the CMCU project number 21G0807.


ncbi_isolation_source: sea water

ncbi_organism_name: Flavobacteriaceae bacterium TMED48

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: MD

ncbi_isolation_source: Paprika

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Leclercia adecarboxylata


ncbi_isolation_source: beef food

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_name: freshwater MAG --- I3b_bin-065

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: BILS


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Nocardioides sp. NPDC101246

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: WA

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: University of Washington


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_submitter: University of Queensland


ncbi_isolation_source: sediment

ncbi_organism_name: Photobacterium profundum

ncbi_strain_identifiers: ATCC BAA-1252

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Oligosphaeraceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus MSSA-47

ncbi_submitter: Broad Institute


ncbi_country: Denmark

ncbi_isolation_source: Bacteremia

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Department of Molecular Medicine (MOMA) - Aarhus University Hospital


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei INT2-Bp91

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


gtdb_type_species_of_genus: t

ncbi_organism_name: Methyloraptor flagellatus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:245

ncbi_submitter: DTU


ncbi_isolation_source: faeces of the Tibetan antelope

ncbi_organism_name: Mycolicibacterium mengxianglii

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_country: Germany: Freising

ncbi_isolation_source: feces

ncbi_organism_name: Sharpea porci

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Bosea sp. OAE506

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. OAE506


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_organism_name: Collinsella sp. AF16-8

ncbi_submitter: BGI


ncbi_isolation_source: intestine

ncbi_submitter: University of Maryland Baltimore


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China agricultural university


ncbi_isolation_source: feces from diarrheal patient

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Streptomyces dubilierae

ncbi_submitter: Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: USA: PA

ncbi_isolation_source: liver

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Brucella abortus bv. 2 str. 86/8/59

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus bv. 2;x__Brucella abortus bv. 2 str. 86/8/59


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China

ncbi_isolation_source: Environment

ncbi_submitter: Sun Yat-sen University


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Pseudescherichia sp.


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas sp. CFBP13508

ncbi_submitter: INRA


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7066

ncbi_submitter: University of Queensland


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Spyradenecus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Lentisphaerales;f__Lentisphaeraceae;x__Lentisphaeraceae incertae sedis;g__Candidatus Spyradenecus;x__unclassified Candidatus Spyradenecus;s__Candidatus Spyradenecus sp.


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_submitter: Toho University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of South Africa


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIFESP


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pseudomonas asplenii

ncbi_strain_identifiers: UPB 526

ncbi_submitter: Walloon Agricultural Research Centre


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: A297 complete genome

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Planctomyces sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Ireland

ncbi_isolation_source: Floor at Door of fridge

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_organism_name: Streptomyces sp. NPDC091259

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: EMG


ncbi_country: Colombia: Barranquilla

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Crocosphaera watsonii WH 0401

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: gut

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Toronto


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: NC

ncbi_isolation_source: lichen thallus

ncbi_organism_name: Nostoc sp. NMS9

ncbi_submitter: University of Liege


ncbi_country: Russia

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae 3051

ncbi_submitter: Research Institute of Physical-Chemical Medicine, Moscow, Russia


ncbi_country: China: Fujian

ncbi_isolation_source: meat

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_strain_identifiers: Bir 303

ncbi_submitter: SC


ncbi_country: Ireland: Kilkieran Bay

ncbi_organism_name: Streptomyces sp. SM11

ncbi_submitter: University College Cork, Ireland


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Treponema sp. UBA4648

ncbi_submitter: University of Queensland


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: carcass swab

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: USA: CA

ncbi_isolation_source: Chicken Breast

ncbi_strain_identifiers: CVM N17

ncbi_submitter: FDA/CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-1505

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 08T1

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Zhengzhou tobacco research institute of CNTC


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_assembly_name: Rumen uncultured genome RUG10283

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: tonsil

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom: Sheffield

ncbi_isolation_source: Not specified

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Cardiff University


ncbi_country: Taiwan: New Taipei City

ncbi_isolation_source: stool

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Pittsburgh


ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_country: Canada: Lacombe

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: AAFC


ncbi_country: China: Hangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-1469

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Russia: Orenburg

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Institute for Cellular and Intracellular Symbiosis


ncbi_organism_name: Microcoleus sp. LAD1_D5

ncbi_submitter: Palacky University Olomouc


ncbi_country: China: Beitun;Xinjiang

ncbi_isolation_source: Raw chicken from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_country: United Kingdom

ncbi_isolation_source: clinical sample

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Balearic Islands


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolate: SAD

ncbi_organism_name: Dehalobacter restrictus

ncbi_strain_identifiers: SAD

ncbi_submitter: University of Toronto


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8430

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Chloroflexaceae bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Fuerstiella sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Hheil

ncbi_organism_name: Helicobacter heilmannii

ncbi_submitter: UGENT


ncbi_organism_name: Corynebacterium sp. KPL1989

ncbi_submitter: Broad Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: chicken

ncbi_submitter: School of Agriculture and Biology, Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolate: Cupriavidus taiwanensis STM 8558

ncbi_organism_name: Cupriavidus taiwanensis

ncbi_strain_identifiers: Cupriavidus taiwanensis STM 8558


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: metagenome

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Brevibacillus reuszeri

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: rumen

ncbi_organism_name: Succinatimonas sp. UBA2938


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Pseudomonas sp. WC1

ncbi_submitter: Slippery Rock University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Vienna


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: UNRC


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Streptomyces sp. DSM 41987

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Center for Genome Regulation (CRG)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Clavibacter sepedonicus

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC058677

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus glycinifermentans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_organism_name: Macrococcoides goetzii

ncbi_submitter: Teagasc Food research


ncbi_isolation_source: Chicken

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21269


ncbi_country: Egypt

ncbi_organism_name: Dietzia lutea

ncbi_submitter: Peking University


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_country: USA: Nebraska

ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: freshwater MAG --- Umea3p2_bin-0020

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWA2_31_9

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWA2_31_9


ncbi_isolation_source: turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:r:-


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: USA: RI

ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. 92-0138


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Beijing

ncbi_isolation_source: urine culture

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Tsinghua University


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alteromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Kenya

ncbi_organism_name: Bacteroidales bacterium UBA6391

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6391


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Hungateiclostridiaceae bacterium KB18

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Hong Kong

ncbi_isolation_source: Biopsy

ncbi_organism_name: Proteus mirabilis


ncbi_country: Sweden

ncbi_isolation_source: Industry

ncbi_organism_name: Corynebacterium sp. CCUG 65737

ncbi_submitter: University of Gothenburg - CCUG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Morganella sp. (in: enterobacteria)

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Morganella;x__unclassified Morganella (in: enterobacteria);s__Morganella sp. (in: enterobacteria)


ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Cornell University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Colwellia piezophila ATCC BAA-637

ncbi_strain_identifiers: ATCC BAA-637

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 10 to 15cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Bangladesh

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Frigoribacterium sp.

ncbi_submitter: EPFL


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: surface water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD6541

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;x__unclassified Candidatus Zambryskiibacteriota;s__Candidatus Zambryskiibacteriota bacterium


ncbi_country: China: Henan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Reineke Island; Peter the Great Bay; Sea of Japan

ncbi_organism_name: Reinekea marinisedimentorum


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA7770

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Psychrobacter luti

ncbi_strain_identifiers: CECT 5885


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 6-319-05_S4_C2

ncbi_submitter: IGS


ncbi_country: India: Kerala; Aroor

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CSIR- National Institute of Oceanography


ncbi_country: Denmark: Vigerslev

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: Missouri

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Candidatus Fimivicinus intestinavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;s__Candidatus Fimivicinus intestinavium


ncbi_assembly_name: Rumen uncultured genome RUG13806

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Japan

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque; gingivitis

ncbi_organism_name: Capnocytophaga ochracea

ncbi_strain_identifiers: KCOM 2191

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Monash University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2617270900 annotated assembly

ncbi_organism_name: Marinobacter sp. LV10R510-11A

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Utah

ncbi_isolation_source: Mine waste

ncbi_organism_name: Ferroacidibacillus organovorans

ncbi_submitter: Redox


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Salinispora oceanensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pakistan: Sheikh Zaid Hospital; Lahore

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli K-12

ncbi_submitter: Rehman Medical Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Massilia sp. BHUDP2

ncbi_submitter: Banaras Hindu University


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Calgary


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Salmonella sp. 741265073_HBA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Xanthomonas campestris pv. plantaginis

ncbi_strain_identifiers: WHRI 8521

ncbi_submitter: University of Warwick


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Monash University


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5459

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5459


ncbi_organism_name: Streptomyces tauricus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pontiella sp.

ncbi_submitter: Quanzhou Normal University


ncbi_country: China

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: CNRS


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0704

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Oscillochloris sp.

ncbi_submitter: BILS


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of California, Davis


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: sea squirt (ascidian)

ncbi_organism_name: Psychrobacter proteolyticus

ncbi_strain_identifiers: KMM 277

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: Panama: Bocas del Toro; Inner Solarte

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Escherichia ruysiae

ncbi_submitter: AgResearch Limited


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: CRN 11

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese People's Liberation Army Center for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD16555

ncbi_submitter: Broad Institute


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: bed

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: feces

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium asiaticum

ncbi_submitter: JCVI


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Neglectibacter sp. 524-5

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cellulosimicrobium cellulans


ncbi_country: USA: Boston

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola dorei


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ecuador: Guayaquil

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Guayaquil


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotellaceae bacterium UBA2713

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Universidad de Concepcion


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Denmark

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Candidatus Multivorans sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;f__Candidatus Multivoraceae;g__Candidatus Multivorans;x__unclassified Candidatus Multivorans;s__Candidatus Multivorans sp.


ncbi_country: Algeria: M sila

ncbi_isolation_source: Nose

ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: Universiteit Gent


ncbi_assembly_name: Rumen uncultured genome RUG14932

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: University of Birmingham


ncbi_country: USA: Kansas

ncbi_submitter: University of Guelph


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nitrospina sp.


ncbi_isolation_source: termite gut

ncbi_organism_name: Alistipes sp. UBA934


ncbi_country: USA: Illinois

ncbi_isolation_source: necrotic enteritis field case

ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: Pennington

ncbi_submitter: RMIT


ncbi_country: USA: New York; NY

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MSKCC


ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: China: Qinghai Province

ncbi_isolation_source: feces

ncbi_organism_name: Arthrobacter jiangjiafuii

ncbi_submitter: China CDC


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Aphodousia faecigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Minas Gerais state

ncbi_isolation_source: urine

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Houston; TX

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instructor, Baylor College of Medicine


ncbi_submitter: Christian Medical College


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: UR ILEAL LP

ncbi_submitter: Washington University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: Woodland Hills; CA

ncbi_isolation_source: Rich garden soil from base of potted plant; private residence; owners do not keep dogs or cats

ncbi_organism_name: Sporosarcina sp. P7

ncbi_submitter: University of Arizona


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Rhodococcus sp. UNC363MFTsu5.1

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. UNC363MFTsu5.1


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: Thailand: Pathumthani

ncbi_isolation_source: Fermented meat (Nham)

ncbi_organism_name: Lactococcus sp. NH2-7C

ncbi_submitter: Chulalongkorn University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Dysosmobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacillus atrophaeus


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. indica;x__Salmonella enterica subsp. indica serovar 1,6,14:a:e,n,x


ncbi_organism_name: Arcobacter cryaerophilus gv. pseudocryaerophilus

ncbi_strain_identifiers: LEO 108

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_country: Australia: QLD

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: USA: Glady River near Bowden; West Virginia

ncbi_organism_name: Spiroplasma alleghenense

ncbi_submitter: Academia Sinica


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Brucella abortus bv. 1 str. NI486

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus bv. 1;x__Brucella abortus bv. 1 str. NI486


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Umea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Streptococcus thermophilus


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Agarivorans sp. QJM3NY_25

ncbi_submitter: Unversity of California Merced


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Tenacibaculum sp. ZS6-P6

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Ondokuz Mayis University, Faculty of Veterinary Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Southern Federal University


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Lachnospira sp.


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: vaginal metagenome


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_isolation_source: Pairi Daiza

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary Medicine, Ghent University


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin101

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_strain_identifiers: KAP bin101

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_country: Denmark

ncbi_isolation_source: Hospitalized patient

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Copenhagen University Hospital Hvidovre


ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Marinobacter salsuginis

ncbi_submitter: Xiamen University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Spain

ncbi_isolation_source: feces

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: UCM


ncbi_isolation_source: sputum

ncbi_organism_name: Rothia sp. HMSC066G02

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC066G02


ncbi_country: Australia: Western Australia; 80 Mile Beach

ncbi_submitter: Federation University Australia


ncbi_country: USA: coastal Georgia; Sapelo Island

ncbi_isolation_source: Coastal seawater

ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: Sapelo Island Microbial Carbon Observatory


ncbi_country: Norway: Askershus

ncbi_isolation_source: ear

ncbi_organism_name: Haemophilus influenzae

ncbi_strain_identifiers: A

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_isolation_source: Diarrheal patient

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Universiteit Antwerpen


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-23

ncbi_isolation_source: bioreactor sludge

ncbi_strain_identifiers: new MAG-23

ncbi_submitter: Micoorganism


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: Neglectibacter sp. X4

ncbi_submitter: Chinese Academy of Science


ncbi_organism_name: [Ruminococcus] faecis JCM 15917

ncbi_submitter: The University of Tokyo


ncbi_country: Canada:Mackenzie Delta

ncbi_isolation_source: permafrost

ncbi_organism_name: Clostridium tagluense

ncbi_submitter: National Institute of Genetics


ncbi_country: USA: Chicago

ncbi_isolation_source: BAL

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: USA: MN

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Alkaliphilus sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: EMG


ncbi_country: USA: Buffalo; NY

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Halarcobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Desulfurivibrionaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Kyushu university


ncbi_assembly_name: Salmonella enterica CVM N40367-SQ v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Brandenburg


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Hubei

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Candidatus Caccenecus avistercoris

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Caccenecus;s__Candidatus Caccenecus avistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Caccenecus;s__Candidatus Caccenecus avistercoris


ncbi_country: China: Anhui

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID4923

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8882

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Methylorubrum aminovorans

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Portugal: Porto; Maia

ncbi_isolate: GP

ncbi_isolation_source: microbial consortium containing Achromobacter denitrificans PR1 and Leucobacter sp.; enrichment cultured inoculated with activated sludge

ncbi_organism_name: Candidatus Leucobacter sulfamidivorax

ncbi_strain_identifiers: GP

ncbi_submitter: Faculty of Chemical Engineering, University of Porto


ncbi_country: Malaysia: Pulau Tioman

ncbi_isolation_source: marine sponge

ncbi_organism_name: Streptomyces sp. PT12

ncbi_submitter: Universiti Malaya


ncbi_country: South Africa: King Dinuzulu Hospital

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0112

ncbi_submitter: Broad Institute


ncbi_country: Greece: Agia; Larissa

ncbi_isolation_source: soil

ncbi_organism_name: Edaphosphingomonas haloaromaticamans

ncbi_submitter: University of South Australia


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1110


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Roseofilum sp. SID1

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Yonsei University


ncbi_country: USA: Tennessee

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas sp. GM16

ncbi_submitter: Oak Ridge National Lab


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_country: Papua New Guinea: Hoia Bay

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Okeania sp. SIO3H1

ncbi_submitter: UCSD


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter quasihormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Streptosporangium sp. NBC_01756

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada: Winnipeg

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Minnesota


ncbi_organism_name: Helicobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Ghana

ncbi_isolation_source: Ghana

ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: South-Central University for Nationalities


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. MB3u-55

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Madagascar

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_assembly_name: Rumen uncultured genome RUG13067

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: IMG-taxon 2667527379 annotated assembly

ncbi_organism_name: Alicyclobacillus montanus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Algeria

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 2000080

ncbi_submitter: IGS


ncbi_country: Tunisia: Tunis

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Streptomyces sp. NPDC059788

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_organism_name: Borreliella valaisiana Tom4006

ncbi_submitter: Institute of chemical biology and fundamental medicine SB RAS


ncbi_country: Pacific Ocean: Hydrate Ridge; Cascadian Margin

ncbi_genome_category: derived from single cell

ncbi_isolate: Hydrate Ridge

ncbi_isolation_source: single-cell amplified by MDA; shell-attached epibiont of snail collected from Methane Seep Snail Community; sample contaminated with other organisms due to its size (approx. 1mm to 2 microns)

ncbi_organism_name: Candidatus Thiomargarita nelsonii

ncbi_strain_identifiers: Hydrate Ridge

ncbi_submitter: University of Minnesota - Twin Cities


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EBI


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Rikenella microfusus

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Propionicimonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Hellea sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: fecal composite

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: Hungary: Budapest

ncbi_isolation_source: polluted ground water

ncbi_organism_name: Mycolicibacterium sp. CH28

ncbi_submitter: Bay Zoltan Nonprofit Ltd. for Applied Research


ncbi_country: Pakistan:Lasbella; Sonmiani; Miani Hor

ncbi_organism_name: Pseudoalteromonas sp. NCCP-2140

ncbi_submitter: Pakistan Agricultural Research Council (PARC)


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: sample DIS-BWI from brine seawater interface of Discovery Deep brine pool

ncbi_organism_name: Candidatus Scalindua rubra

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__Candidatus Scalindua rubra

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__Candidatus Scalindua rubra


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_strain_identifiers: acrnr

ncbi_submitter: NHGRI/NIH


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: McGill University


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Segatella copri


ncbi_organism_name: Deferribacter thermophilus

ncbi_strain_identifiers: BMA

ncbi_submitter: Western Brittany University


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Blastocatellales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. NW793

ncbi_submitter: Sichuan University


ncbi_assembly_name: freshwater MAG --- LJ-3-65m_bin-0326

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: China: Tibet

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Deinococcota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC020747

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasisuis

ncbi_submitter: Wageningen University and Research


ncbi_country: Chile: Santiago

ncbi_isolation_source: periprosthetic liquid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Escherichia coli

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus OCMM6117

ncbi_submitter: Broad Institute


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Polaribacter gangjinensis

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_country: USA: Cambridge; Massachusetts

ncbi_isolation_source: human oral cavity UC16

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium oral taxon 488


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Thailand: Nan province

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira weilii

ncbi_submitter: Chulalongkorn University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWF2_35_48

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWF2_35_48


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_organism_name: Collinsella tanakaei

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Henan

ncbi_isolation_source: probiotic product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: south china agriculture university


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Methylomagnum ishizawai

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0305260.12

ncbi_submitter: IGS


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China agricultural university


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: China: South China Sea

ncbi_isolation_source: soil sediment

ncbi_organism_name: Exiguobacterium sp. s155

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s155


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Syntrophomonas sp. UBA5425

ncbi_submitter: University of Queensland


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA150

ncbi_submitter: Broad Institute


ncbi_organism_name: Morganella morganii

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0005


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum of child cystic fibrosis patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universtity Hospital Cologne


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Fluviicola taffensis DSM 16823

ncbi_submitter: Biology Centre CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Crocinitomicaceae;g__Fluviicola;s__Fluviicola taffensis;x__Fluviicola taffensis DSM 16823


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO