ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


gtdb_representative: f

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus 5S-1215

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: MD

ncbi_isolation_source: Poultry

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Cyanobium usitatum str. Tous

ncbi_submitter: Biology Centre CAS


ncbi_assembly_level: Scaffold

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-403

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_strain_identifiers: new MAG-403

ncbi_submitter: Micoorganism

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Paraclostridium sordellii


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Norway

ncbi_isolation_source: clinical

ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_submitter: Norwegian Defence Research Establishment (FFI)


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Bacillus sp. 7520-S

ncbi_submitter: Bielefeld University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 7520-S


ncbi_isolation_source: Bloodstream

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Argentina

ncbi_isolation_source: Wheat flour; commercial

ncbi_organism_name: Pediococcus argentinicus

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)

ncbi_type_material_designation: assembly from type material


ncbi_country: USA

ncbi_organism_name: Enterobacter sp. BWH52

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. BWH52


ncbi_country: Russia

ncbi_organism_name: Streptomyces hirsutus

ncbi_strain_identifiers: NRRL B-3040

ncbi_submitter: USDA/ARS/NCAUR

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA:New Jersey; Wharton State Forest; Hawkins Bridge

ncbi_isolation_source: gut dissection

ncbi_organism_name: Mesoplasma whartonense

ncbi_submitter: University of Connecticut


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coprococcus sp. TM115-141

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_assembly_name: IMG-taxon 2706794923 annotated assembly

ncbi_organism_name: Anoxynatronum buryatiense

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptococcus pyogenes ABC020014529


ncbi_isolation_source: cystic fibrosis

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: LM-UGent


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_country: Portugal: Porto

ncbi_isolation_source: Cow meat

ncbi_organism_name: Acinetobacter defluvii

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: USA: St. Louis; Missouri

ncbi_isolation_source: intestine

ncbi_organism_name: Vibrio cholerae ZWU0020

ncbi_submitter: University of Oregon


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Anaeromyxobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Murdochiella vaginalis

ncbi_submitter: URMITE


ncbi_isolation_source: leaves

ncbi_organism_name: Methylobacterium sp. WL69

ncbi_submitter: Aarhus University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Psychrobacter sp. Ps5

ncbi_submitter: Xiamen University


ncbi_country: China: Guigang City; Guangxi Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_country: Chile: Colina; Region Metropolitana

ncbi_isolation_source: stools

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Universidad de Chile


ncbi_country: South Korea

ncbi_isolation_source: automobile

ncbi_organism_name: Sphingomonas sp. MA1305

ncbi_submitter: Chung ang university


ncbi_organism_name: Phocaeicola sartorii


ncbi_isolate: new MAG-132

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_strain_identifiers: new MAG-132

ncbi_submitter: Micoorganism


ncbi_country: Bangladesh

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: University of Dhaka


ncbi_isolation_source: human gut

ncbi_organism_name: Lacrimispora saccharolytica

ncbi_submitter: EMG


ncbi_country: Russia: Yaroslavl

ncbi_organism_name: Exiguobacterium alkaliphilum

ncbi_submitter: IBPM RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium alkaliphilum


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Candidatus Methylomirabilis sp.

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;x__unclassified Candidatus Methylomirabilis;s__Candidatus Methylomirabilis sp.


ncbi_organism_name: Acinetobacter nosocomialis Ab22222

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: activated sludge

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Aarhus Universitet


ncbi_organism_name: Campylobacter concisus


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Alberta


ncbi_isolation_source: food

ncbi_submitter: University Hospital Muenster


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWF2_40_14

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWF2_40_14


ncbi_organism_name: Paenibacillus glycanilyticus

ncbi_submitter: College of Industrial Technology, Nihon University


ncbi_country: Germany: Wietze

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Actinomycetaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China

ncbi_isolation_source: fresh feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Thessaly


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_assembly_level: Chromosome

ncbi_organism_name: Ilumatobacter fluminis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: uncultured Blastocatellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Priestia megaterium

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_isolate: Streptococcus species

ncbi_isolation_source: Human

ncbi_organism_name: bacterium

ncbi_strain_identifiers: Streptococcus species

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lactiplantibacillus plajomi

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Forsyth Institute


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Choleraesuis


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: Croatia

ncbi_organism_name: Mycoplasma mycoides subsp. capri

ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri


ncbi_organism_name: Roseibium sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli KTE166

ncbi_submitter: Broad Institute


ncbi_country: Italy

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 409

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: SNUC 2784

ncbi_submitter: University of Calgary


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 10068A

ncbi_submitter: University of Exeter


ncbi_country: Germany

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bielefeld, Germany


ncbi_country: Russia: Voronezh Region

ncbi_organism_name: Dickeya solani

ncbi_submitter: Institute of Bioorganic Chemistry


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_organism_name: Lachnospiraceae bacterium GAM79

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Japan

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: rhizosphere soil culture M58

ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1207552

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG536

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterobacter roggenkampii


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Faecalimonas umbilicata

ncbi_submitter: University of Chicago


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Denmark: Odense NW

ncbi_isolation_source: activated sludge from OdNW_18-Q3-R42-56

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Sorangium sp. So ce1036

ncbi_strain_identifiers: So ce1036

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce1036


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Waltera sp.


ncbi_country: Portugal

ncbi_isolation_source: expectoration

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Max Rubner-Institut


ncbi_country: France: Tahiti

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Deinococcales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: EMG


ncbi_country: USA: coastal Georgia; Sapelo Island

ncbi_isolation_source: Coastal seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sapelo Island Microbial Carbon Observatory


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_country: Peru

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: Israel: Shoval

ncbi_isolation_source: mammary tissue

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Staphylococcus aureus M1044

ncbi_submitter: Broad Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Enterococcus durans IPLA 655

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus durans;x__Enterococcus durans IPLA 655


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: Environment

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_isolation_source: cornea

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of New South Wales


ncbi_country: Brazil: Sao Paulo

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC069E09

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolate: isolate

ncbi_isolation_source: Urine

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: isolate

ncbi_submitter: Dr. Sarita Mohapatra, Department of Microbiology, All Indian Institute of Medical Sciences


ncbi_organism_name: Isoptericola sp. NPDC060282

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: Argentina

ncbi_isolation_source: urine

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_country: Italy: Bresso; MI

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: Tajikistan

ncbi_isolation_source: fermented goat milk

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA: Baltimore

ncbi_isolation_source: patient fluids

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Johns Hopkins University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: California

ncbi_isolation_source: lung tissue swab

ncbi_organism_name: Mycoplasma sp. CSL7503-lung

ncbi_submitter: US FDA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Nagoya University


ncbi_country: China: Guangxi

ncbi_organism_name: Xanthomonas phaseoli pv. manihotis

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_isolate: ZNE

ncbi_organism_name: Dehalococcoides mccartyi

ncbi_strain_identifiers: ZNE


ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Methylomicrobium sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Australia

ncbi_isolation_source: Cabernet Sauvignon

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Exercitatus varius

ncbi_submitter: University of Copenhagen


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Sterolibacterium sp.

ncbi_submitter: The University of Auckland


ncbi_country: USA: Seattle

ncbi_isolation_source: vagina

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus;s__Aerococcus christensenii;x__Aerococcus christensenii DSM 15819 = CCUG 28831


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin Swab

ncbi_organism_name: Dietzia cinnamea

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian Sea

ncbi_organism_name: SAR202 cluster bacterium Casp-Chloro-G3

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium Casp-Chloro-G3


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alcanivorax sp. UBA3353

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: Washington

ncbi_isolation_source: Enviornmental

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: USA: Florida

ncbi_isolation_source: Uterine swab from cow 29776

ncbi_organism_name: Porphyromonas levii

ncbi_submitter: University of Florida


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia albertii

ncbi_submitter: CDC


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Ochrobactrum sp. BD61

ncbi_strain_identifiers: BD 61

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_organism_name: uncultured Desulfocicer sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Opitutus sp.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Wyoming


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterobacter cloacae complex sp. IR5418

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5418


ncbi_organism_name: uncultured Sulfurospirillum sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Sediminicola sp.

ncbi_submitter: University of East Anglia


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: Berlin

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: China: Suzhou

ncbi_organism_name: Shigella sonnei

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- VK_bin-1616

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriia bacterium

ncbi_submitter: BILS


ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: China

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Aarhus University


ncbi_country: USA: PA

ncbi_isolation_source: Gall Bladder

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_organism_name: Faecalicoccus pleomorphus

ncbi_submitter: Korean Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: Stoquefichus jeddahense

ncbi_organism_name: Candidatus Stoquefichus sp. SB1

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Candidatus Stoquefichus;x__unclassified Candidatus Stoquefichus;s__Candidatus Stoquefichus sp. SB1


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: LABEO


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;o__Mycoplasmoidales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma urealyticum;x__Ureaplasma urealyticum serovar 5;x__Ureaplasma urealyticum serovar 5 str. ATCC 27817


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: USA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: Brazil: Rio Grande do Sul

ncbi_isolation_source: stem

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: CNPSo 3703

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: USA: Boston; MA

ncbi_submitter: Emory University


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus sp. S101_ASV_20

ncbi_submitter: Washington University in St. Louis


ncbi_country: Switzerland: Bern

ncbi_isolation_source: Forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Inselspital, Bern University Hospital


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_country: Uganda

ncbi_organism_name: Mycobacterium tuberculosis UT0073

ncbi_submitter: Broad Institute


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Terasakiella pusilla

ncbi_submitter: Ocean University of China


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_submitter: Toho University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: JSS Academy of Higher Education & Research


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella;s__Legionella wadsworthii;x__Legionella wadsworthii DSM 21896 = ATCC 33877


ncbi_country: Germany: Freiburg

ncbi_isolation_source: Gut content

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Algeria

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho university


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycobacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Onthocola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Onthocola;x__unclassified Candidatus Onthocola;s__Candidatus Onthocola sp.


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 0292


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWB1_40_14


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Nonomuraea pusilla

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Africa: Driefontein mine in Carletonville district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Ignavibacterium album

ncbi_submitter: University Duisburg-Essen


ncbi_country: Spain

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Arctic Ocean: Arctic deep sea; Hakon Mosby Mud Volcano

ncbi_isolation_source: sediment

ncbi_organism_name: Pelotomaculum sp. UBA3102

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_organism_name: Clostridiales bacterium VE202-26

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Atlantibacter hermannii


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Zurich


ncbi_organism_name: Polaribacter sp. P097

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: China

ncbi_organism_name: Pseudomonas sp. 17103552

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Ireland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- Loc090907-5m_bin-188

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacillus cereus group sp. MYBK12-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK12-2


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_organism_name: Kitasatospora sp. NPDC057223


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: uncultured Terracidiphilus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vibrio campbellii

ncbi_submitter: ICAR-Central Institute of Brackishwater Aquaculture


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 1241

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Kangiella sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Pontixanthobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__environmental samples;s__uncultured Candidatus Peregrinibacteria bacterium


ncbi_country: Sweden

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: PA

ncbi_isolation_source: snow king peach

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0446R

ncbi_submitter: Broad Institute


ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Elusimicrobia bacterium GWC2_56_31

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;x__unclassified Elusimicrobiota;s__Elusimicrobia bacterium GWC2_56_31


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field NE area of North Tower vent

ncbi_isolation_source: biosyringe of microbial iron mat on a black smoker and underlying reddish chimney wall

ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: University of Bergen


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: water

ncbi_organism_name: Acidithrix sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR


ncbi_organism_name: uncultured Gemella sp.

ncbi_submitter: EMG


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus sp. HMSC36F05

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Reidsville; GA

ncbi_isolation_source: slender amaranth

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lautropia mirabilis


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA: KS

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Switzerland

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Atopobium sp.


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Encruzilhada do Sul

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Paenibacillus helianthi

ncbi_submitter: INCT - Núcleo de Microbiologia Agrícola


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Sellimonas sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China

ncbi_isolation_source: environmental swabs

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Milwaukee; Wisconsin

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Wisconsin-Milwaukee


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: Japan

ncbi_organism_name: Odoribacteraceae bacterium

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_country: USA: FL

ncbi_isolation_source: leafy green leaf

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


gtdb_type_species_of_genus: t

ncbi_assembly_name: Bittarella massiliensis

ncbi_submitter: URMITE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Bittarella (ex Durand et al. 2017);s__Bittarella massiliensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Bittarella (ex Durand et al. 2017);s__Bittarella massiliensis (ex Durand et al. 2017)


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NIZO food research


ncbi_country: USA: Cedar Swamp; Massachusetts

ncbi_isolation_source: water

ncbi_submitter: California Institute of Technology


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: Mashed potatoes

ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Zurich


ncbi_isolation_source: recirculating aquaculture

ncbi_organism_name: Membranihabitans marinus

ncbi_submitter: Second Institute of Oceanography


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Arachnia propionica

ncbi_submitter: UC Davis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridioides difficile 842

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: adult feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_isolation_source: murine gut

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Queensland


ncbi_country: Thailand: Phitsanulok

ncbi_submitter: Cardiff University


ncbi_country: Germany: Munich

ncbi_isolation_source: deer meat

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Yoonia maritima

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: RMIT University


ncbi_country: Taiwan

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: biofertilizer

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Huazhong agricultural university


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: pharyngeal exudates

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Instituto Politecnico Nacional


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Kribbella sp. NPDC051137

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Sao Paulo


ncbi_country: Malaysia

ncbi_isolation_source: soil sample

ncbi_organism_name: Burkholderia pseudomallei str. MARAN

ncbi_strain_identifiers: MARAN

ncbi_submitter: Universiti Malaya, Kuala Lumpur


ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: USA: Washington; University Place

ncbi_isolation_source: One-stage PNA wastewater reactor

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: University of Washington


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: Italy: Bari

ncbi_isolation_source: raw milk

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_organism_name: Pseudomonas helleri

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Streptomyces sp. NPDC015127


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Serratia marcescens

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_submitter: Rani Lakshmi Bai Central Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Streptomyces lusitanus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Metabacillus sp. 84

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IIT Roorkee


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Bacteroides kribbi

ncbi_submitter: University of Parma


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Fudan University Huashan Hospital Institute of Antibiotics


ncbi_country: Mexico: oxygen minimum zone off the coast of Manzanillo

ncbi_isolation_source: water

ncbi_organism_name: Fidelibacterota bacterium UBA3122

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA3122


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Lactococcus hircilactis

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Leptospira interrogans

ncbi_strain_identifiers: 9C MS

ncbi_submitter: Universidade Federal de Pelotas


ncbi_organism_name: Hydrogenobacter sp. RSW1

ncbi_submitter: Montana State University


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: USA: NC

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Enterococcus faecalis EnGen0337

ncbi_submitter: Broad Institute


ncbi_country: South Korea: Gyeonggi-do

ncbi_isolation_source: chicken meat

ncbi_submitter: Korea University Graduate School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Bangladesh: Matlab

ncbi_isolation_source: drinking water

ncbi_organism_name: Escherichia coli

ncbi_submitter: icddr,b


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: University of Washington


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Actinoplanes sp. NPDC048791

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of the Witwatersrand


ncbi_isolation_source: faecal

ncbi_submitter: SC


ncbi_country: United Kingdom: London

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_isolation_source: Caecum

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Tres Rios Wastewater Reclamation Facility in Tucson; Arizona

ncbi_isolation_source: enrichment culture derived from anaerobic digestion as an inoculum

ncbi_organism_name: Thauera sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1493


ncbi_organism_name: Muribaculum intestinale


ncbi_country: South Korea: Jeju island

ncbi_isolation_source: marine sediment

ncbi_organism_name: Salinimonas marina

ncbi_submitter: Jeju National University


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD0_bin-0503

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Caldisericota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__environmental samples;s__uncultured Caldisericota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Montana State University


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Below Boulder

ncbi_organism_name: bacterium

ncbi_submitter: University of Duisburg-Essen


ncbi_country: Chile: Santiago

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pseudomonas fulva


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Mexico

ncbi_isolation_source: Uroculture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNAM


ncbi_assembly_name: freshwater MAG --- Erken-D11_bin-1423

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_submitter: University of Alabama Birmingham


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Finland: Baltic Sea; Archipelago of Stockholm

ncbi_isolation_source: freshwater

ncbi_organism_name: Nodularia sphaerocarpa CS-585A2

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_isolation_source: Intestinal biopsy

ncbi_submitter: Universidad de Chile


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S5

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Calgary


ncbi_assembly_name: Rumen uncultured genome RUG13491

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Fodinibius sp.

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_country: South Korea

ncbi_isolation_source: marine

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Enterococcus faecalis EnGen0196

ncbi_submitter: Broad Institute


ncbi_country: China: Guangxi

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Proteiniphilum sp.


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 9

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Streptococcus parauberis

ncbi_strain_identifiers: DB-WT

ncbi_submitter: Seoul National University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 2962

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Planctomicrobium piriforme

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Toronto

ncbi_isolation_source: hospital

ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni str. RM3420


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Loyola University Chicago


ncbi_country: Canada:Athabasca Oil Sands

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteroidales bacterium UBA2249

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2249


ncbi_organism_name: Agarivorans gilvus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Poland

ncbi_isolation_source: laboratory mutant of Helicobacter pylori N6

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Faculty of Biology and Environmental Protection, University of Lodz


ncbi_organism_name: Enterococcus faecium EnGen0371

ncbi_strain_identifiers: VAN 327

ncbi_submitter: Broad Institute


ncbi_country: Switzerland

ncbi_submitter: University of Bern


ncbi_country: USA: New Hampshire

ncbi_isolation_source: transcending colon aspirate

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Candidatus Syntrophosphaera sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;x__unclassified Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera sp.


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Commercial cheese starter culture

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: COPD W1a

ncbi_submitter: Chengdu University


ncbi_organism_name: Alteromonas abrolhosensis

ncbi_submitter: Tang lab


ncbi_submitter: Wayne State University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Estonia

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: University of Tartu


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: HRSE 27

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Pseudochrobactrum saccharolyticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_country: USA: Texas

ncbi_organism_name: Xanthomonas sacchari


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with normal maize

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Capnocytophaga sputigena

ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nantong Center for Disease Control and Prevention


ncbi_organism_name: Pseudomonadales bacterium


ncbi_organism_name: Streptomyces sp. NBC_00876

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia sp. WS1265

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Bacillus cereus group sp. BceL108

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL108


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE68

ncbi_submitter: Broad Institute


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA4525

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_country: India: Rameshwaram

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: JNTUH


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_organism_name: Dolichospermum compactum NIES-806

ncbi_submitter: Toyohashi University of Technology


ncbi_isolation_source: high methane producing sheep

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA3304


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_country: Argentina: Antarctica

ncbi_isolation_source: temporary water pond in Antarctica

ncbi_submitter: INDEAR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas extremaustralis;x__Pseudomonas extremaustralis 14-3;x__Pseudomonas extremaustralis 14-3 substr. 14-3b


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Fujian; Zijin

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: ground water from background well at DOE s FRC site at Oak Ridge

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: San Mateo County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Chile

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Salmonella enterica subsp. salamae

ncbi_submitter: Universidade de Santiago de Compostela


ncbi_country: France: Pyrenees

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pumilus

ncbi_strain_identifiers: NRRL BD-220

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Dialister invisus CAG:218

ncbi_submitter: DTU


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: dairy product

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Soft tissues

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: university of cambridge


ncbi_organism_name: Collinsella aerofaciens


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridiaceae bacterium


ncbi_country: USA: Colorado

ncbi_isolation_source: ear swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Belgium

ncbi_isolation_source: Lambic beer

ncbi_organism_name: Brytella acorum

ncbi_submitter: university of Ghent


ncbi_country: Canada: Lacombe

ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: AAFC


ncbi_organism_name: Brevibacterium sp. NPDC049920

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany

ncbi_isolation_source: Packed chicken meat

ncbi_organism_name: Photobacterium carnosum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vulcanococcus sp. SFB_Poly_Co_62

ncbi_submitter: Stanford University


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: BAYGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;s__Cutibacterium acnes;sb__Cutibacterium acnes subsp. defendens;x__Cutibacterium acnes subsp. defendens ATCC 11828


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: United Kingdom: Isle of Mull

ncbi_isolation_source: post-mortem samples of blood; liver; lungs; and spleen of a common otter

ncbi_organism_name: Vagococcus lutrae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Pseudomonas bubulae

ncbi_submitter: Macquarie University


ncbi_country: Australia: NSW

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_organism_name: Xenorhabdus littoralis

ncbi_strain_identifiers: PSL

ncbi_submitter: Universidad Nacional de Villa Maria


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_organism_name: Chryseobacterium cucumeris

ncbi_submitter: College of Resources and Environmental science


ncbi_assembly_name: Rumen uncultured genome hRUG902

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: sea water

ncbi_organism_name: Alphaproteobacteria bacterium UBA2964

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: Salmonella enterica CVM N43471 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 8,(20):-:z6


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: Germany: Dobichau

ncbi_isolation_source: kidney

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_isolation_source: human gut

ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Australia: WA; Corrigin

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. CO1-1-2

ncbi_submitter: Curtin University


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: ARRIAM


ncbi_country: China: Shanghai

ncbi_isolation_source: anammox sludge

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: East China of university of science and technolongy


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France

ncbi_organism_name: Dickeya solani RNS 08.23.3.1.A

ncbi_submitter: Institut des Sciences du vegetal


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriales bacterium UBA7795

ncbi_submitter: University of Queensland


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Sphingobacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital affiliated to Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter sp. 04-C-08-SI-ECC

ncbi_submitter: TRAPREA


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: University of Minnesota


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Nanjing University


ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_submitter: Northwestern University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Streptomyces sp. SudanB52_2052

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_submitter: Zhejiang university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_assembly_name: Rumen uncultured genome RUG11294

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Iowa

ncbi_isolation_source: Oropharynx

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: British Columbia

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Vancouver Island University


ncbi_country: Burkina Faso

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Russia: Tomsk region; Seversk

ncbi_isolation_source: Groundwater sampled from observation wells of deep repository of liquid radioactive waste

ncbi_organism_name: Pseudomonas veronii

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Canada: Syncrude; Ft. McMurray; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Spirochaetaceae bacterium UBA5630

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Michigan


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: beetle eggs

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: Japan

ncbi_isolation_source: Swab sample of faucet part of tea dispenser

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_country: Canada: Vancouver

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_country: USA: Oahu; HI

ncbi_isolation_source: South Kaneohe Bay; near MCBH; Oahu; Hawaii

ncbi_organism_name: gamma proteobacterium HIMB30

ncbi_submitter: Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_isolation_source: Faeces

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Australian Institute of Marine Science

ncbi_isolation_source: seawater

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Enterococcus avium

ncbi_submitter: University of California, Davis


ncbi_country: USA: Maryland

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Zhejiang University


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_organism_name: Croceicoccus naphthovorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Svalbard: Smeerenburgfjorden

ncbi_isolate: MAG AM3-A

ncbi_isolation_source: marine sediment; Station J; 17-20 cmbsf

ncbi_organism_name: Candidatus Sulfomarinibacter kjeldsenii

ncbi_strain_identifiers: MAG AM3-A

ncbi_submitter: University of Vienna


ncbi_country: Brazil: Amazon

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Bronchial washing (contralateral lung; no tumour)

ncbi_organism_name: Prevotella histicola

ncbi_submitter: University of the Sunshine Coast


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: USA: Carson; CA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolate: Blood

ncbi_strain_identifiers: O2:H5;STp 1;STw 95;NILS21:B2;Blood

ncbi_submitter: UMR 1137 IAME


ncbi_assembly_name: freshwater MAG --- Day2-6_bin-221

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_strain_identifiers: FTCR 438

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avichristensenella;s__Candidatus Avichristensenella intestinipullorum


ncbi_country: Australia: Melbourne

ncbi_isolation_source: blood; clinical sample

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus ST2249;x__Staphylococcus aureus subsp. aureus SK1585


ncbi_country: Brazil

ncbi_isolation_source: Buffalo milk

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Sao Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal


ncbi_isolate: Dwuxii

ncbi_organism_name: Desulfovibrio diazotrophicus

ncbi_strain_identifiers: Dwuxii

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: USA: Grand Staircase Escalante National Monument; Utah

ncbi_isolation_source: wet rock wall; Lower Calf Creek Falls; Navajo sandstone

ncbi_organism_name: Tolypothrix brevis GSE-NOS-MK-07-07A

ncbi_submitter: University of California, Riverside


ncbi_isolation_source: urine

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Lelliottia sp.


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis