ncbi_country: China: Luzhou

ncbi_isolation_source: no

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Canada: Waterloo

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: leachate from a composite leachate cistern at an active municipal landfill in Southern Ontario

ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_level: Scaffold

ncbi_country: Uzbekistan: Kyzylkum desert

ncbi_isolation_source: saltwort

ncbi_organism_name: Modestobacter sp. VKM Ac-2983

ncbi_strain_identifiers: VKM Ac-2983

ncbi_submitter: G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, PSCBR RAS


ncbi_organism_name: Candidatus Nitrosopelagicus sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Archaea;x__Thermoproteati;p__Nitrososphaerota;x__Nitrososphaerota incertae sedis;g__Candidatus Nitrosopelagicus;x__unclassified Candidatus Nitrosopelagicus;s__Candidatus Nitrosopelagicus sp.


ncbi_assembly_level: Complete Genome

ncbi_country: China: Lishui

ncbi_isolation_source: sputum

ncbi_organism_name: Prescottella equi

ncbi_strain_identifiers: WY

ncbi_submitter: Wenzhou Medical University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: blood

ncbi_submitter: The Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 2010K-0267


ncbi_country: USA

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UC San Diego


gtdb_representative: t

ncbi_country: South Korea: Han River

ncbi_organism_name: Ramlibacter algicola

ncbi_refseq_category: reference genome

ncbi_submitter: Chung-Ang University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Mesorhizobium sp. M1405

ncbi_submitter: Washington State University


ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Capnocytophaga gingivalis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Helicobacter acinonychis

ncbi_strain_identifiers: MAC

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_country: China

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: Ngtc CS 5

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China: Henan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: Nigeria

ncbi_submitter: JCVI


ncbi_country: China: Qingdao Hema Fresh Hong Kong Middle Road Store

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Hohai University


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Streptomyces sp. Ac-502

ncbi_submitter: Research Institute of Physico-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC048723

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Yangzhou University


ncbi_organism_name: Prosthecochloris vibrioformis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Leptospira terpstrae

ncbi_submitter: Saint-Petersburg Pasteur Institute


gtdb_type_species_of_genus: t

ncbi_organism_name: Hyphobacterium vulgare

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Micrococcaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Salmonella sp. SAL00640

ncbi_submitter: Zhejiang university


ncbi_organism_name: Pseudomonas gorinensis

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Slovenia

ncbi_isolation_source: Milk from the udder of a cow with mastitis

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DGA CBRN Defence Center


ncbi_organism_name: Rhizobium sp. BR 314

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Tengchong

ncbi_isolation_source: Hotspring

ncbi_organism_name: Cohnella sp. CFH 77786

ncbi_submitter: Henan Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Cohnella;x__unclassified Cohnella;s__Cohnella sp. CFH 77786


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Vibrio parahaemolyticus AN-5034

ncbi_submitter: J Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus AN-5034


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Yonsei University


ncbi_country: China: Guangzhou

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: USA: Minnesota area

ncbi_isolation_source: soil sample; enrichment culture methanol as carbon source

ncbi_organism_name: Bacillus methanolicus MGA3

ncbi_submitter: Bielefeld University


ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Hunan; Changsha

ncbi_isolation_source: diseased fish

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Hunan Normal University


ncbi_assembly_name: freshwater MAG --- AM-2014-D4_bin-091

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_assembly_level: Chromosome

ncbi_isolation_source: Hot spring microbial mat

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Unversidad Michoacana de San Nicolas de Hidalgo


ncbi_country: USA:Pulley Ridge

ncbi_isolation_source: marine sponge

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Florida Atlantic University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalicatena sp.

ncbi_submitter: EMG


ncbi_country: China: Shanghai

ncbi_isolation_source: feces

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Nigeria: Nsukka

ncbi_isolation_source: sold in market

ncbi_organism_name: Citrobacter portucalensis

ncbi_strain_identifiers: Nsk 4

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna


ncbi_organism_name: uncultured Neisseria sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: USA

ncbi_strain_identifiers: NEBExpress

ncbi_submitter: New England Biolabs


ncbi_country: United Kingdom: London

ncbi_isolation_source: Screening

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 50:k:z;x__Salmonella enterica subsp. diarizonae serovar 50:k:z str. MZ0080


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Guizhou

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: University of Chicago


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhodococcus ruber

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.


ncbi_country: Norway: Oslo

ncbi_organism_name: Chitinophagaceae bacterium IBVUCB1

ncbi_submitter: University of Oslo


ncbi_country: Spain

ncbi_isolation_source: Natural basque ropy cider

ncbi_organism_name: Liquorilactobacillus sicerae

ncbi_submitter: University of the Basque Country


ncbi_country: Chile: Santiago

ncbi_isolation_source: fecal samples

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Gallimonas merdigallinarum

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdigallinarum


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Klebsiella pneumoniae DMC0799

ncbi_submitter: JCVI


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong (CityU)


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Iran

ncbi_isolation_source: leaf

ncbi_organism_name: Clavibacter lycopersici

ncbi_strain_identifiers: CFBP 8616

ncbi_submitter: Shiraz University


ncbi_country: China

ncbi_isolation_source: conjugation assay

ncbi_submitter: Ruijin hosipital


ncbi_organism_name: Pseudomonas sp. P7548

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Brevundimonas sp.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: AAFC


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: China: Hangzhou

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF102-84

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Enterobacter sp. 01-M-02-AD-ECC

ncbi_submitter: TRAPREA


ncbi_organism_name: uncultured Alkaliphilus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rahnella inusitata

ncbi_submitter: University of Alberta


ncbi_organism_name: Salmonella sp. SKLX078532

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Spirochaeta sp.


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Brevinematales bacterium


ncbi_organism_name: uncultured Sulfuricurvum sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The first affiliated hospital of Henan University of Chinese Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacillus cereus group sp. BceL137

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL137


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: Nigeria: Sokkoto State;Ilella

ncbi_isolation_source: ant gut

ncbi_organism_name: Serratia rubidaea

ncbi_submitter: University of Jos


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: College of Basic Medical Science


ncbi_organism_name: Nostoc sp. B(2019)

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Amaricoccus sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Propionibacterium sp.


ncbi_isolate: metabat2_XCR1_HET_6734_bwa.127 MAG

ncbi_organism_name: Clostridia bacterium

ncbi_strain_identifiers: metabat2_XCR1_HET_6734_bwa.127 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: UIUC


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Netherlands: Delft

ncbi_isolate: galUA

ncbi_isolation_source: galacturonate enrichment culture

ncbi_strain_identifiers: galUA

ncbi_submitter: Delft Univeristy of Technology


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: CA

ncbi_isolation_source: ovine rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Switzerland: Kanton Zug

ncbi_submitter: University of Zurich


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Cellulomonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: IMG-taxon 2681813560 annotated assembly

ncbi_organism_name: Virgibacillus pantothenticus

ncbi_strain_identifiers: DSM 26

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Poland

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: CIRM-BIA 1210

ncbi_submitter: Brigham Young University


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: RMIT University


ncbi_assembly_name: IMG-taxon 2708742398 annotated assembly

ncbi_organism_name: Bacillus altitudinis


ncbi_submitter: Faculdade de Medicina Veterinaria e Zootecnia de Botucatu

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: lake water

ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Nose swab

ncbi_organism_name: Pasteurella dagmatis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: USA: Hawaii

ncbi_isolation_source: Eggs

ncbi_organism_name: Kosakonia sp. S57

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Collinsella sp.

ncbi_submitter: AAFC


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Saint-Isidore; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas atacamensis

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: DOE JGI


ncbi_country: Pacific Ocean

ncbi_isolation_source: basaltic crustal fluids

ncbi_submitter: University of Hawaii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium JdFR-52


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AQ

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Mycobacterium canetti

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Roseicyclus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_assembly_name: Rumen uncultured genome RUG11047

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Humanitas Research Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Caulobacter sp. Root343

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: Caecum


ncbi_isolation_source: cattle feces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EBI


ncbi_organism_name: Rhodococcus sp. IEGM 1408

ncbi_strain_identifiers: IEGM 1408

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. IEGM 1408


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: British Columbia;Surrey

ncbi_isolation_source: stream water

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Alberta

ncbi_submitter: University of British Columbia


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_country: Ireland

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: University College Cork


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1779S

ncbi_submitter: Broad Institute


ncbi_organism_name: Sphingopyxis terrae

ncbi_submitter: Xiamen University


ncbi_organism_name: Brevibacillus formosus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Belgium

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas sp. E6002

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Pseudoalteromonas atlantica

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: McMaster University


ncbi_submitter: Puyang Oil Field General Hospital


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: SPRUCE 490

ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 490

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


ncbi_organism_name: Roseibium salinum

ncbi_strain_identifiers: CECT 8816

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Epulonipiscium;x__environmental samples;s__uncultured Candidatus Epulonipiscium sp.


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_assembly_name: freshwater MAG --- AM_bin-3816

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Colwellia polaris

ncbi_submitter: University of East Anglia


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 1

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Glasgow


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: cervical canal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: caecum

ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Verrucomicrobiales bacterium


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_country: China: HeNan

ncbi_isolation_source: Pus

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: USA: New Haven; CT

ncbi_isolation_source: air

ncbi_organism_name: Buchnera aphidicola (Macrosiphoniella sanborni)

ncbi_strain_identifiers: Msa

ncbi_submitter: University of Hawaii


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA7735

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: South China Sea

ncbi_organism_name: Methylococcaceae bacterium CS2

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA16833

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: eye

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Greenland

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas sp. S410

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Orenburg

ncbi_isolation_source: post-treated wastewater effluent

ncbi_organism_name: Candidatus Sarmatiella mevalonica

ncbi_submitter: University of Pavia


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil: Uberaba

ncbi_isolation_source: urine

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Brucella melitensis

ncbi_submitter: University of Pretoria


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: caecum

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Veterinary Research Institute


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: SAR116 cluster bacterium AG-325-F22

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium AG-325-F22


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Shimia sp.

ncbi_submitter: SCOPE


ncbi_organism_name: Gardnerella leopoldii

ncbi_submitter: Drexel University College of Medicine


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Mexico

ncbi_organism_name: Xanthomonas translucens pv. undulosa

ncbi_submitter: Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. undulosa


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Sneathiella sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of California at Davis


ncbi_country: Mexico: Puebla

ncbi_isolation_source: Peritoneal dialysis liquid

ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: China

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: cold seep

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Verrucomicrobia bacterium Tous-C9LFEB

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium Tous-C9LFEB


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Manitoba


ncbi_organism_name: Brucella abortus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2599185225 annotated assembly

ncbi_organism_name: Natronincola ferrireducens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Mudanjiang

ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Nocardia albiluteola

ncbi_submitter: School of life science


ncbi_country: USA: PA

ncbi_isolation_source: avian liver (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Shenzhen

ncbi_organism_name: Nitratireductor pacificus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: USA: Escalon; California

ncbi_isolation_source: almond drupe

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: Lebanon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: lebanese american university


ncbi_organism_name: Halomonas cerina

ncbi_strain_identifiers: CECT 7282

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Jiangxi Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Guangzhou

ncbi_isolation_source: chicken

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: NYC

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Ectothiorhodospiraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: IN

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Desulfovibrionaceae bacterium UBA3823

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Tarim University


ncbi_organism_name: Prevotella intermedia


ncbi_country: Australia

ncbi_isolation_source: cattle feces

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Rhodoluna sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Rhodoluna;x__environmental samples;s__uncultured Rhodoluna sp.


ncbi_country: Spain: Madrid

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Hospital Universitary 12 de octubre


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia sp. TW15838

ncbi_submitter: Georgia Institute of Technology, School of Civil and Environmental Engineering


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus WMCA6091

ncbi_submitter: Broad Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- UppL5_bin-0786

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Porticoccaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Uppsala University


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: uncultured Orrella sp.


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Bifidobacterium breve

ncbi_strain_identifiers: SLAM-BBNH

ncbi_submitter: Seoul National University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Escherichia coli

ncbi_submitter: Weifang People's Hospital


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Los Alamos National Lab


ncbi_organism_name: Salmonella sp. NW1018

ncbi_submitter: Sichuan University


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: FL

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: WIsconsin

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. sk226

ncbi_submitter: Cornell University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Malaysia: Perak

ncbi_isolation_source: Ulu Slim Hot Spring

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University of Malaya


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV118

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: National Microbiology Lab


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: CAU


ncbi_organism_name: Cyanobacteria bacterium P01_F01_bin.53

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_F01_bin.53


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Antarctica

ncbi_organism_name: Deinococcus marmoris DSM 12784

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: University of Minnesota


ncbi_country: China: Naqu City; Tibet Autonomous Region

ncbi_organism_name: Actinomyces procaprae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: Norway:Trondheim Fjord

ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces sp. MP131-18

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Brenneria alni

ncbi_strain_identifiers: NCPPB 3934

ncbi_submitter: Bangor University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Blautia obeum

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paraprevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 1; Comp 2; UV layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: water

ncbi_organism_name: bacterium UBP5_UBA1551

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP5_UBA1551


ncbi_organism_name: Rivularia sp. (in: cyanobacteria)

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Rivulariaceae;g__Rivularia;x__unclassified Rivularia (in: cyanobacteria);s__Rivularia sp. (in: cyanobacteria)


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_country: USA: California

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: UC Berkeley


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Campylobacter pinnipediorum subsp. caledonicus

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: OsloMet


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Basel


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Thailand: Trang

ncbi_isolation_source: food

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: dianzhenduan


ncbi_country: Singapore

ncbi_isolation_source: environment

ncbi_organism_name: Aeromonas sp. PrichA-15

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: China: Guangong Microbial Culture Collection Center

ncbi_isolation_source: tilipia intestine

ncbi_organism_name: Romboutsia lituseburensis

ncbi_submitter: Pearl River fishers research institute


ncbi_country: Montenegro

ncbi_isolation_source: Montengrin brine cheese

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Donja Gorica


ncbi_organism_name: Borreliella lusitaniae

ncbi_submitter: Insititute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana


ncbi_organism_name: Porphyromonadaceae bacterium UBA3321


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Croatia: Zagorje

ncbi_isolation_source: soft fresh cheese

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: IGA Technology Services Srl


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northumbria University


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_submitter: Cornell University


ncbi_country: Russia: South-East Zabaikalie; Lake Khilganta

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Methylophaga muralis

ncbi_strain_identifiers: Bur 1

ncbi_submitter: G.K.Skryabin IBPM PAS


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Greece: Milos

ncbi_organism_name: Nocardiopsis sp. SBT366

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: SC


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13104

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: CA

ncbi_isolation_source: mouth

ncbi_organism_name: Neisseria dumasiana

ncbi_submitter: Wadsworth Center / NYSDOH


ncbi_assembly_name: freshwater MAG --- LJ_bin-1959

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Auburn University


ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: PacBio sequel II

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: ICAR-Central Inland Fisheries Research Institute


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 1685

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Pseudomonas sp. TWR1-1-3

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Panama: Bocas del Toro; Inner Solarte

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SBM Research Institute of Rospotrebnadzor


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: India: Gujarat

ncbi_isolation_source: activated sludge

ncbi_organism_name: Treponema sp. CETP13

ncbi_submitter: National Environmental Engineering Research Institute-CSIR


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Prince of Songkla University


ncbi_country: USA

ncbi_isolation_source: nasal passage from dialysis patient control

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CIGC345D


ncbi_country: USA: NC

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: Brazil

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_submitter: Wits University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Clinical sample (blood)

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Desulfobacteraceae bacterium UBA4769

ncbi_submitter: University of Queensland


ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Azerbaijan

ncbi_isolation_source: Corpse

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: Paddy grain of stored rice seeds

ncbi_organism_name: Cellulomonas pakistanensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada: Newfoundland

ncbi_organism_name: Pseudomonas sp. J380

ncbi_submitter: Memorial University of Newfoundland


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Virginia

ncbi_isolation_source: seed coat

ncbi_organism_name: Curtobacterium sp. TC1

ncbi_submitter: Virginia Tech


ncbi_country: Austria: Vienna

ncbi_isolation_source: wilkins-chalgren anaerobe media

ncbi_organism_name: Gordonibacter sp. RACS_AR49

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_isolation_source: soil

ncbi_organism_name: Mycolicibacterium sp. TUM20985

ncbi_submitter: Toho University


ncbi_country: United Kingdom

ncbi_isolation_source: tuber

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Sorbonne University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Oceanicola sp.

ncbi_submitter: SCOPE


ncbi_organism_name: Methylobacterium tardum

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom: Scotland; Royal Infirmary; Dumfries & Galloway

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Aberdeen


ncbi_isolation_source: sputum

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_organism_name: Proteus sp. G4445

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4445


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Campylobacter molothri

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Schaalia odontolytica

ncbi_submitter: Zymo Research Corporation


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: Puerto Rico: Maunabo

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Mesorhizobium australicum

ncbi_submitter: Washington State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Kangiellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: AIT AUSTRIAN INSTITUTE OF TECHNOLOGY


ncbi_country: Japan

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Toho University


ncbi_country: Tanzania

ncbi_isolation_source: nasal swabs from HIV infected patient

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Bergen


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: United Kingdom: Leicester

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_country: China

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Canada: Lacombe

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: Yugoslavia

ncbi_organism_name: Pseudomonas cannabina

ncbi_strain_identifiers: ICMP 2821

ncbi_submitter: University of Toronto


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: SC


ncbi_country: South Africa: Soweto; Gauteng

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Alkalithermobacter paradoxus

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_submitter: Universidad de Cadiz


ncbi_isolation_source: Blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Anseongella ginsenosidimutans

ncbi_submitter: Fudan University


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Escherichia coli 8-415-05_S4_C1

ncbi_submitter: IGS


ncbi_country: Colombia: Medellin

ncbi_organism_name: Leptospira santarosai str. AIM

ncbi_strain_identifiers: AIM

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_submitter: Academia Sinica


ncbi_country: USA

ncbi_isolation_source: Cornea/ocular infection

ncbi_organism_name: Pseudomonas aeruginosa 6077

ncbi_submitter: Broad Institute


ncbi_country: Canada

ncbi_isolation_source: Deep-sea hydrothermal vent from the Main Endeavour Field on the Juan de Fuca Ridge

ncbi_organism_name: Vreelandella neptunia

ncbi_strain_identifiers: CECT 5815

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Aeromonas media WS

ncbi_submitter: Nanjing Agriculture University


ncbi_assembly_name: IMG-taxon 2636416079 annotated assembly

ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: Rain

ncbi_organism_name: Xanthomonas euroxanthea

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Psychrosphaera sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paenarthrobacter sp. NCHU4564

ncbi_submitter: Academia Sinica


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Streptomyces sp. PD-S100-1

ncbi_submitter: Smith College


ncbi_organism_name: Pseudolactococcus raffinolactis


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Acinetobacter junii


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Clostridia bacterium


ncbi_submitter: national health research institutes


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: University of Amsterdam


ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacillus safensis

ncbi_submitter: University of Alaska Anchorage


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Secone University Hospital, Sichuan University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Tokyo Medical and Dental University


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Center for Laboratory Medicine


ncbi_country: France

ncbi_organism_name: Megamonas rupellensis DSM 19944

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Streptomyces sanglieri

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Serbia

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of Washington


ncbi_isolation_source: human tissue

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: ukhsa


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Prochlorococcus marinus XMU1425

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: Stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: SEOUL NAT'L UNIV.


ncbi_organism_name: Chryseobacterium sp. JJR-5R

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_organism_name: Cyanobacteria bacterium J06649_12

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06649_12


ncbi_country: France: Rennes

ncbi_isolation_source: nasal carriage

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Sea sediment

ncbi_organism_name: Agromyces marinus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Wenzhou; Eye hospital

ncbi_isolation_source: intraocular

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Wenzhou Medical University


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: New Zealand: Christchurch

ncbi_submitter: University of Canterbury


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: cerebrospinal fluid from a fatal case of infantile meningitis

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus spizizenii

ncbi_strain_identifiers: MPF 57

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Belarus: Mogilev

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: Northumbria University


ncbi_organism_name: Flavitalea sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolate: Patient #44

ncbi_isolation_source: Skin

ncbi_organism_name: Cutibacterium acnes

ncbi_strain_identifiers: Patient #44

ncbi_submitter: sapienza university


ncbi_country: China: Jiangxi

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human oral metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Final Effluent

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: keratitis

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Burkholderia mallei

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences (AMMS)


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: United Kingdom: Aberystwyth; Ystwyth valley

ncbi_organism_name: Corallococcus exercitus

ncbi_submitter: Aberystwyth University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sediment sample collected from floor of cattle farm

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: The REHAB Consortium


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: xylene contaminated groundwater

ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Duisburg-Essen University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_submitter: Toho University


ncbi_country: USA: New York City

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Mount Sinai School of Medicine


ncbi_strain_identifiers: Pomona

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Pomona;x__Leptospira interrogans serovar Pomona str. Pomona


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Calgary


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Massachusetts

ncbi_organism_name: Brevundimonas sp. ASV9

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Portugal: Porto

ncbi_isolation_source: raw wastewater

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Aveiro


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; Northern Atlantic

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Vienna


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Anaerococcus octavius

ncbi_submitter: University of Minnesota


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC059850

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Peptostreptococcaceae bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Spirulinaceae cyanobacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: SponGES


ncbi_isolate: AOP43_C2_surf _bin _22

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: AOP43_C2_surf _bin _22

ncbi_submitter: Genoscope


ncbi_country: China

ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: [Ruminococcus] lactaris


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: Germany

ncbi_isolation_source: Ropy Bread

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_strain_identifiers: Fad 82

ncbi_submitter: University of Alberta

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: San Diego State University


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Oak Ridge; Tennessee

ncbi_isolation_source: aquifer

ncbi_organism_name: Atlantibacter subterraneus

ncbi_strain_identifiers: FRCl

ncbi_submitter: Jahangirnagar University


ncbi_country: China: Shanxi

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: China: Quzhuomu Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolate: Human faeces

ncbi_organism_name: Escherichia ruysiae

ncbi_strain_identifiers: Human faeces

ncbi_submitter: AMSTERDAM UMC


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China: Yangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dysgonamonadaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital


ncbi_country: China: Lake Dianchi

ncbi_isolation_source: sediment

ncbi_organism_name: Magnetococcales bacterium DCbin4

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Prescottella defluvii

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE