ncbi_submitter: Sichuan University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: China: Qinghai

ncbi_genome_representation: full

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_assembly_level: Scaffold

ncbi_country: Kenya

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA1107

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1107


ncbi_assembly_level: Complete Genome

ncbi_country: Taiwan

ncbi_isolation_source: infant feces

ncbi_organism_name: Lacticaseibacillus paracasei subsp. paracasei

ncbi_submitter: Food Industry Research and Development Institute


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Israel: Tel Aviv

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: California

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Southern California


gtdb_representative: t

ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: Sun Yat-sen University


ncbi_country: Spain: Sevilla

ncbi_submitter: CHU A Coruna


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-3-2-15-E-TSA2

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: Toho University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Paraburkholderia mimosarum

ncbi_submitter: Jai Narain Vyas University


ncbi_country: Russia: Yamal Peninsula; mouth of the Yara-Yakha River

ncbi_isolation_source: cryopeg water sample

ncbi_organism_name: Labilibaculum sp. K2S

ncbi_submitter: IBPM RAS


ncbi_submitter: FDA/CFSAN


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_submitter: Massey University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_strain_identifiers: NBRC 3401

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces violaceusniger group;s__Streptomyces hygroscopicus;sb__Streptomyces hygroscopicus subsp. hygroscopicus


ncbi_country: Poland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: Italy

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: McGill University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: Methanobrevibacter smithii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Japan: Shizuoka

ncbi_isolation_source: Oil spill

ncbi_organism_name: Pseudomonas sp. MIS38

ncbi_submitter: Centre of Microbial and Plant Genetics


ncbi_isolation_source: Stool

ncbi_organism_name: Escherichia sp. Marseille-Q3837

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: USA: IA

ncbi_isolation_source: small intestine hamster cricetinae

ncbi_organism_name: Escherichia coli


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Prevotellaceae bacterium UBA1746

ncbi_submitter: University of Queensland


ncbi_isolation_source: Plant tissue

ncbi_organism_name: Pseudomonas quasicaspiana

ncbi_refseq_category: reference genome

ncbi_submitter: University of Florida

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Lijiang; Yunnan Province

ncbi_isolation_source: forest soil

ncbi_organism_name: Georgenia ruanii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: desert soil

ncbi_organism_name: Patulibacter sp. SYSU D01012

ncbi_strain_identifiers: SYSU D01012

ncbi_submitter: Sun Yat-Sen University


ncbi_submitter: National Institute for Communicable Disease


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Pseudomonas canadensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Fimbriimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Massilia jejuensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Henan Agricultural University


ncbi_submitter: Maynooth University


ncbi_organism_name: uncultured Terricaulis sp.


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: McMaster University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Granulosicoccaceae bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Basel


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Rhodoferax sp.


ncbi_organism_name: Dichotomicrobium sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Beef Minced meat

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin39

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: MOJ bin39

ncbi_submitter: Monash University


ncbi_country: China: Fankou; Guangdong Province

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: South china normal university


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: KOlimastIR


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis


ncbi_country: China

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_country: Switzerland

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Department of Microbiology, Graduate School of Medicine, Kyoto University


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Actinomyces sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: Makerere University


ncbi_country: Argentina: Puerto de Rawson; Chubut

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Universidad Nacional de la Patagonia San Juan Bosco


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Malaysia

ncbi_isolation_source: peat soil samples

ncbi_organism_name: Curtobacterium flaccumfaciens

ncbi_submitter: AIMST University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA4685

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4685


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Serratia ficaria

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: Rumen uncultured genome RUG10855

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: USA

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Bacteroides stercoris


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Streptococcus pyogenes ABC020048262


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Anaerofustis stercorihominis

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_country: China

ncbi_isolation_source: petroleum contaminated soil

ncbi_organism_name: Chelativorans sp. AA-79

ncbi_submitter: Nankai University


ncbi_isolation_source: Caecum


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2675903231 annotated assembly

ncbi_organism_name: Alicyclobacillus macrosporangiidus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Sinanaerobacter sp. ZZT-01

ncbi_submitter: Sanming University


ncbi_organism_name: Halomonas salifodinae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Staphylococcus lugdunensis VCU148

ncbi_submitter: J. Craig Venter Institute


ncbi_country: United Kingdom: Scotland; Queen Elizabeth University Hospital Glasgow

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Aberdeen


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens


ncbi_country: Brazil: Minas Gerais; Iron quadrangle

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BIGA


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Fimbriimonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LHUB-ULB


ncbi_organism_name: Senegalimassilia anaerobia


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Poland: Suwalki

ncbi_isolation_source: BAL

ncbi_organism_name: Streptococcus sp. 812

ncbi_submitter: National Medicines Institute


ncbi_country: Germany

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Japan

ncbi_isolation_source: drain drainage

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Toho university


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Belgium: Wallonia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: United Kingdom: England

ncbi_organism_name: Bacillus thuringiensis serovar aizawai

ncbi_strain_identifiers: BGSC 4J2

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar aizawai


ncbi_country: USA: San Francisco city on San Franscisco county

ncbi_isolation_source: Abscess

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_submitter: China Agricultural University


ncbi_country: USA: Oregon

ncbi_organism_name: Rhizobium sp. L245/93

ncbi_submitter: Oregon State University


ncbi_country: USA: Bronx; New York

ncbi_isolation_source: granulomatous skin lesions of moray eels

ncbi_organism_name: Mycobacterium montefiorense

ncbi_submitter: Uppsala University


ncbi_country: Tanzania

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Clostridium perfringens


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Philippines

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Troendleina suluensis)


ncbi_country: Antarctica: Ardley Cove; Maxwell Bay; Fildes Peninsula

ncbi_isolation_source: ocular surface sample

ncbi_organism_name: Cardiobacteriaceae bacterium TAE3-ERU3

ncbi_submitter: Erciyes University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Affiliated Taian City Central Hospital of Qingdao University


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC093984

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shandong University


ncbi_organism_name: Fervidobacterium gondwanense

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: huazhong agriculture university


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Canada: Quebec City

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USSR

ncbi_organism_name: Francisella tularensis subsp. mediasiatica

ncbi_submitter: Northern Arizona University


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa

ncbi_isolation_source: Hospital effluent

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zoonosis Science Center


ncbi_assembly_name: freshwater MAG --- Ki3-D2_bin-0481

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: United Kingdom

ncbi_isolation_source: urine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Nonomuraea rubra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food - Turkey

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA19943269


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Anaerococcus sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Faecalibacterium taiwanense

ncbi_submitter: Food Industry Research and Development Institute


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: Peadiatric - occupied bed

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-90

ncbi_submitter: Arkin Lab


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef carcass

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Hornefia butyriciproducens


ncbi_assembly_name: freshwater MAG --- Umea2_bin-2570

ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient37 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_organism_name: Faecalicoccus pleomorphus

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Paenibacillus sp. GYB004

ncbi_submitter: Gyeongsang National University Hospital


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. CRB-7

ncbi_submitter: Southwest Jiaotong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CRB-7


ncbi_country: Israel

ncbi_organism_name: Nostoc linckia z18

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Caldibacillus thermoamylovorans

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Nanosynbacter sp.

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;x__unclassified Candidatus Nanosynbacter;s__Candidatus Nanosynbacter sp.


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Mycobacterium tuberculosis TB_RSA100

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: Italy: Sarentino (BZ)

ncbi_organism_name: Clostridium botulinum C

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Bordetella avium

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Japan

ncbi_isolation_source: methanogenic sludge treating industrial wastewater

ncbi_organism_name: Pelotomaculum isophthalicicum JI

ncbi_strain_identifiers: JI

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Atopobiaceae bacterium 24-176

ncbi_submitter: Nanjing University


ncbi_organism_name: Limnospira sp. PMC 1234.20

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 co-cultured with S. maltophilia in Synthetic Cystic Fibrosis Media for 24 days in the absence of imipenem

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: ABKVE

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Streptomyces sp. NPDC058441

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: MI

ncbi_organism_name: Rhodococcus sp. 14-2483-1-2

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 14-2483-1-2


ncbi_country: Ireland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Houston; TX

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instructor, Baylor College of Medicine


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Caldisericaceae bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: USA: California; Eel River; Middle Fork Eel River

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_37_MFU_D_B

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany

ncbi_organism_name: Rodentibacter pneumotropicus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Arenibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces nigrescens

ncbi_submitter: Purdue University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: Australia: Brisbane

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: The University of Queensland


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: MOX E

ncbi_isolation_source: methanogen symbiont from mussel gill epithellium

ncbi_strain_identifiers: MOX E

ncbi_submitter: CRC 1182 Origin and Function of Metaorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__Bathymodiolus brooksi methanotrophic gill symbiont


ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_isolation_source: Abscess

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Streptomyces sp. NPDC059874

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eubacterium aggregans

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Streptomyces venezuelae


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Candidatus Merdousia gallistercoris


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Thiotrichales bacterium 35-46-9


ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Great Yarmouth

ncbi_isolation_source: surface coastal seawater

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: Ocean university of China


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Kiel University


ncbi_country: China: cold seep area situated on the northern continental slope of the South China Sea

ncbi_isolation_source: trophosome tissue

ncbi_submitter: HKUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Paraescarpia echinospica


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: Centre for Microbiome Research


ncbi_country: India: Orissa; Athamallik

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Pannonibacter indicus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Australia

ncbi_isolation_source: Hospital isolate from Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: SAHMRI


ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Italy: Rome

ncbi_isolation_source: fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sapienza University of Rome


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa BWHPSA042

ncbi_submitter: Broad Institute


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hong Kong

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: river water

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: Peru: Junin

ncbi_isolation_source: swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: Pakistan

ncbi_isolation_source: soil

ncbi_organism_name: Microvirga pakistanensis

ncbi_submitter: Southwest Forestry University


ncbi_organism_name: Leptolyngbyales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Shanghai

ncbi_submitter: China Aricultural University


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: LNCC


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Chicago


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Parapedobacter lycopersici

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: City University of Hong Kong


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. 2010C-4086


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China

ncbi_isolation_source: stool from diarrheal patient

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, and State Key Laboratory for Infectious Disease Prevention and Control, Chinese Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni ICDCCJ07002


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.


ncbi_country: USA: GA

ncbi_isolation_source: sediment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Duncaniella sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_submitter: Stony Brook University


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Germany

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Yantai University


ncbi_country: France

ncbi_isolation_source: 88-year old man presenting knee prosthesis infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LNCC


ncbi_country: China: Gansu

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Dorea sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Schinkia azotoformans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Oceanobacillus sp. MO10714A

ncbi_submitter: Philippine National Collection of Microorganisms


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_country: France: Saintes

ncbi_isolation_source: blood

ncbi_submitter: French National Center for Antibiotics Resistance


ncbi_country: Australia: Australian Institute of Marine Science

ncbi_isolation_source: seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: University of Vienna


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: WTSI


ncbi_country: Malaysia: Selangor

ncbi_isolation_source: Vulval swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Malaya


ncbi_country: Belgium

ncbi_isolation_source: NPS

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Mycobacterium sherrisii

ncbi_submitter: The Affiliated Quanzhou First Hospital of Fujian Medical University


ncbi_country: China: Chongqing

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter cloacae complex sp. ECL411

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. ECL411


ncbi_assembly_name: IMG-taxon 2615840594 annotated assembly

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Cronobacter dublinensis subsp. dublinensis

ncbi_submitter: University of Wyoming


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Neisseria sp. P0019.S002

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: EMG


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Legionella Naegleria sp. PL0398

ncbi_isolate: Legionella Naegleria sp. PL0398

ncbi_organism_name: Legionellaceae bacterium

ncbi_strain_identifiers: Legionella Naegleria sp. PL0398

ncbi_submitter: Earlham Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chifeng Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella sp. 141251

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Caldicoprobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_assembly_name: freshwater MAG --- MJ120827A_bin-348

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: USA: San Fransisco

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Endomicrobiia bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Wujia chipingensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_country: USA: St. Charles; Illinois

ncbi_isolation_source: sink drain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Worthington


ncbi_submitter: Center for Microbial Communities


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: cervical canal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bradyrhizobium daqingense

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Bacteroides sp. CAG:770


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22941;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Parvibaculum sp.

ncbi_submitter: EMG


ncbi_isolation_source: groundwater

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Gloeomargarita sp. SKYB31

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Australia: Brisbane

ncbi_isolation_source: lungs of cystic fibrosis patient C

ncbi_organism_name: Acinetobacter sp. C15


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4469

ncbi_submitter: University Hospital Regensburg


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter trogontum

ncbi_submitter: AAFC


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: blood

ncbi_submitter: Child Health Research Foundation


ncbi_country: Argentina

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Bradyrhizobium genomosp. III

ncbi_strain_identifiers: CCBAU 15615

ncbi_submitter: China Agricultural University


ncbi_organism_name: Treponema succinifaciens


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nitrosomonadales bacterium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Moraxella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_submitter: Institut de Biologie Integrative et des Systemes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mississippi


ncbi_country: Tanzania: Moshi

ncbi_isolation_source: environmental

ncbi_submitter: Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar 1,13,23:z:1,5


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Methylothermaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1217

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1217


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: N

ncbi_submitter: SC


ncbi_isolation_source: human gut metagenome


ncbi_country: India: Rajakkamangalam; Kanyakumari

ncbi_isolation_source: fermented rice

ncbi_organism_name: Bacillus xiamenensis

ncbi_submitter: King Saud University


ncbi_country: Italy: Molveno (TN)

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Stanford University


ncbi_country: China: Suzhou

ncbi_organism_name: Weissella confusa

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium RIFOXYD1_FULL_40_23


ncbi_organism_name: Enterococcus pseudoavium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: EMG


ncbi_isolation_source: Faeces


ncbi_country: Algeria: Abarar river

ncbi_organism_name: Leptospira abararensis

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: yolk sac

ncbi_organism_name: Escherichia coli

ncbi_submitter: Mississippi State University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Arthrobacter sp. efr-133-TYG-104

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptomyces lavendulocolor

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycoplasmopsis cynos

ncbi_submitter: University of Guelph


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_submitter: China Agriculture University


ncbi_country: Ecuador

ncbi_isolation_source: skin and soft tissue

ncbi_submitter: Universidad Tecnica de Ambato

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: USA: Mississippi

ncbi_isolation_source: soil

ncbi_organism_name: Pyxidicoccus sp. MSG2

ncbi_submitter: University of Mississippi


ncbi_country: Australia: Kalgoorlie

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: China: Guide

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B3812

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: termite gut

ncbi_organism_name: Lachnoclostridium sp. UBA933

ncbi_submitter: University of Queensland


ncbi_country: Chile: Santiago

ncbi_submitter: Universidad de Chile


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0510

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Burkholderia anthina

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: France

ncbi_organism_name: Corynebacterium propinquum DSM 44285

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC058299

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


gtdb_type_species_of_genus: t

ncbi_organism_name: Azorhizophilus paspali

ncbi_strain_identifiers: NCAIM B.01794

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Rhodanobacter ginsengisoli


ncbi_organism_name: Catenibacterium mitsuokai


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Methyloglobulus sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Nigeria, Nsukka, Nigeria


ncbi_organism_name: Neisseria mucosa

ncbi_submitter: Cleveland Clinic Lerner Research Institute


ncbi_organism_name: Segatella copri


ncbi_organism_name: Bacteroides uniformis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: China Conservation and Research Center for the Giant Panda


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Sheffield


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: porcine rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_country: USA

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: USDA-APHIS


ncbi_organism_name: Amnibacterium soli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: University of Georgia


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Purdue University


ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudanabaena sp. OTE_70b_metabat_355

ncbi_submitter: EPFL


ncbi_country: United Kingdom

ncbi_organism_name: Brucella suis

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: Clone isolated from the evolution experiment described in Ketola et al. 2013 (doi: 10.1111/evo.12148)

ncbi_submitter: UNIVERSITY OF JYVASKYLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens ATCC 13880


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mexico

ncbi_strain_identifiers: CAIM 1400

ncbi_submitter: CIAD-Mazatlan


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Brazil

ncbi_isolation_source: rectal swab

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Ocean University of China


ncbi_country: China

ncbi_isolation_source: sera

ncbi_organism_name: Brucella melitensis bv. 3 str. 128

ncbi_submitter: Beijing Institute of Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella melitensis;x__Brucella melitensis bv. 3;x__Brucella melitensis bv. 3 str. 128


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d'Aosta


ncbi_country: South Korea

ncbi_isolation_source: mud

ncbi_organism_name: Defluviimonas salinarum

ncbi_submitter: Chung-Ang University


ncbi_assembly_name: Salmonella enterica CVM N51253 v1.0

ncbi_country: USA: CO

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Brandenburg


ncbi_country: USA: NY

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus DAR1161

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: China:Zhejiang province

ncbi_isolation_source: probitic products

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Zhejiang Tianke High Technology Development Co.Ltd.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Australia

ncbi_isolation_source: goat carcass

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: USA: IL

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_assembly_name: Rumen uncultured genome RUG14719

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikro


ncbi_organism_name: Dielma fastidiosa


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Texas at Dallas


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sri Lanka:Polonnaruwa

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Rajarata University of Sri lanka


ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Puniceicoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Blautia producta


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Paracoccus cavernae

ncbi_strain_identifiers: CECT 8482

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: California

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: Polymorphobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Rufibacter glacialis

ncbi_submitter: Nanjing Normal University


ncbi_organism_name: Sedimenticolaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Bacilli bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Italy: Sassari

ncbi_isolation_source: bile

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sassari


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bacteroidota bacterium


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Amrita Vishwa Vidyapeetham


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Rhizosphere

ncbi_organism_name: Pseudomonas extremorientalis

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: Milk

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae UHKPC26

ncbi_submitter: JCVI


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli UMEA 3175-1

ncbi_submitter: Broad Institute


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Chonnam National University


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Portugal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: BGI


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Czech Republic

ncbi_isolation_source: soil

ncbi_organism_name: Granulicella sp. L46

ncbi_submitter: Institute of Microbiology of the AS CR


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: EMG


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Clostridium sp. UBA4108


ncbi_country: Poland: Bialystok

ncbi_isolation_source: upper respiratory tract

ncbi_organism_name: Escherichia coli O126:H45

ncbi_submitter: Medical University of Bialystok


ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_submitter: The University of Auckland


ncbi_country: USA: Oso Bay; Corpus Christi; TX

ncbi_isolation_source: shallow marine bay sediment near the effluent of a municipal waste water treatment plant

ncbi_organism_name: Methylophaga sp. OBS3

ncbi_submitter: Dauphin Island Sea Lab


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Colwellia sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Acinetobacter ursingii


ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Anaerococcus sp.


ncbi_country: China: Sichuan

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EBI


ncbi_country: USA:Lake Borgne

ncbi_isolation_source: surface water

ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: Louisiana State University

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis


ncbi_country: Japan: Tokachi area; Obihiro

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Laboratory of Food microbiology and Immunology, Obihiro University of Agri. & Vet. Medicine


ncbi_country: Australia

ncbi_organism_name: Mesorhizobium loti

ncbi_submitter: Curtin University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_organism_name: Methylocaldum sp.

ncbi_submitter: Joint Institute for Nuclear Research


ncbi_country: Czech Republic: Praha

ncbi_isolation_source: pus

ncbi_organism_name: Morganella morganii

ncbi_submitter: Charles University in Prague


ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from dieased colony 1

ncbi_organism_name: Vallitalea sp.

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Lachnoanaerobaculum sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Sweden

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Orebro University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Norway

ncbi_isolation_source: Tissue from head

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: USA: New Mexico

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Texas Tech University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV175

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Stanford University


ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: US Food and Drug Administration


ncbi_assembly_name: R-75387 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA:California; Northridge

ncbi_isolation_source: feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_strain_identifiers: CSUN-12 AmI

ncbi_submitter: California State University, Northridge


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_submitter: Institute of Experimental Medicine


ncbi_submitter: University of Bern


ncbi_organism_name: Escherichia coli KTE192

ncbi_submitter: Broad Institute


ncbi_organism_name: Legionella impletisoli

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: Fresh water

ncbi_organism_name: Sphingomonas astaxanthinifaciens DSM 22298

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: France: Limoges

ncbi_submitter: Universite Paris Sud


ncbi_submitter: University of Wyoming


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium CG07_land_8_20_14_0_80_50_8


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: China: Jiangsu

ncbi_isolation_source: urine

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Geobacter sulfurreducens PCA

ncbi_strain_identifiers: PCA

ncbi_submitter: TIGR


ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii TG27407

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: Ghana

ncbi_isolation_source: temporary pool

ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: Australia

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter tandoii;x__Acinetobacter tandoii DSM 14970 = CIP 107469


ncbi_country: USA: CA

ncbi_isolation_source: yellow nectarine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Oklahoma

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Oklahoma


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalimonas umbilicata

ncbi_submitter: BGI-Shenzhen


ncbi_country: Brazil: Belem

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Streptomyces sp. NPDC001978

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Bangladesh: Mathbaria

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of Jyvaskyla


ncbi_country: Australia: Melbourne

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: University of Chicago


ncbi_country: South Korea

ncbi_submitter: Shin's Lab., Kyungpook National University


ncbi_organism_name: Enterococcus faecalis EnGen0200

ncbi_submitter: Broad Institute


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_country: USA: Minnesota

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: university of minnesota


ncbi_country: Australia: Badu Island; Torres Strait

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia mayonis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Vogesella facilis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Scybalocola faecigallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum


ncbi_organism_name: Porphyromonas endodontalis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Denmark: Ega

ncbi_isolation_source: activated sludge from Ega_18-Q3-R5-49

ncbi_organism_name: Candidatus Brachybacter algidus

ncbi_submitter: Aalborg University


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Dechloromonas sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_isolation_source: rhizosphere soil culture M52

ncbi_organism_name: Streptomyces sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Malaysia

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Candidatus Endomicrobium embiratermitis

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Herpetosiphonaceae bacterium

ncbi_submitter: RIKEN-BRC


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_strain_identifiers: Sil NS 14

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Brasilia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: Rectal swab

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Azotobacter salinestris

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_country: Germany: Jena

ncbi_isolation_source: rectal swab neonate

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Alphaproteobacteria bacterium 16-39-46


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Rumen uncultured genome RUG10074

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Selenomonas bovis

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: Nitrosomonas nitrosa

ncbi_submitter: University of Queensland


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India