ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_level: Scaffold

ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


gtdb_representative: t

ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium RIFCSPLOWO2_01_FULL_37_24


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_assembly_level: Complete Genome

ncbi_country: China

ncbi_isolation_source: vomit of food poisoning patient

ncbi_organism_name: Bacillus cereus

ncbi_submitter: National Institutes for Food and Drug Control


ncbi_country: United Kingdom

ncbi_isolation_source: pre-filter tanks

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Technische Universitaet Muenchen

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_submitter: Zhejiang University


ncbi_country: China: Nanchang; Poyang Lake

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_country: France: Normandy

ncbi_isolation_source: Stools

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: China: Qingdao

ncbi_isolation_source: soil

ncbi_organism_name: Archangium violaceum

ncbi_submitter: Shandong University


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_country: Turkey: Kars

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_country: China: Taizhou

ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia sp. R12

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_assembly_name: Actinobacteria bacterium Ga0077560

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Actinobacteria bacterium Ga0077560

ncbi_submitter: University of Glasgow

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium Ga0077560


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: biofilm

ncbi_organism_name: Actinobacteria bacterium UBA2286

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium UBA2286


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NBC_01754

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_country: Canada: British Columbia

ncbi_submitter: University of Iceland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;x__Nostoc cyanobionts;s__Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont'


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Mongolia: former hungai province

ncbi_isolation_source: Acid Camel milk

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Key Laboratory of Dairy Biotechnology and Engineering, Education Ministry of P. R. China


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Xenorhabdus ehlersii

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Czech Republic

ncbi_isolation_source: intestinal contents of pig

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Segatella hominis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_organism_name: Cupriavidus necator


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Acidaminococcus intestini


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Washington


ncbi_country: China

ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Brazil

ncbi_isolation_source: urban river

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Adolfo Lutz Institute


ncbi_submitter: McGill University


ncbi_country: Mexico

ncbi_isolation_source: Heads

ncbi_organism_name: Enterococcus sp. S53

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_organism_name: Paraburkholderia phenoliruptrix BR3459a

ncbi_refseq_category: reference genome

ncbi_submitter: LNCC


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces lydicus

ncbi_strain_identifiers: WYEC 108

ncbi_submitter: Brown University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Aeromonas sp. R10-2

ncbi_submitter: Hangzhou CDC


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: Japan

ncbi_isolation_source: fecal

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Tokyo University of Marine Science and Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Kyushu University


ncbi_organism_name: Blautia sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: USA: Yelm; WA

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Paenibacillus farraposensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: India

ncbi_isolation_source: lung

ncbi_submitter: San Diego State University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Thiobacillaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: Gastric biopsies

ncbi_organism_name: Helicobacter pylori FD506

ncbi_submitter: University of Malaya-Malaysian Genomics Resource Centre Berhad-University of New South Wales


ncbi_assembly_level: Chromosome

ncbi_country: Switzerland

ncbi_isolation_source: milk sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_assembly_name: Salmonella enterica CVM N44705 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes ihumii

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_submitter: The ithree institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Reyranella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Houston; TX

ncbi_isolation_source: vagina

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Seattle University


ncbi_country: USA

ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Germany

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_country: Taiwan

ncbi_isolation_source: environmental

ncbi_strain_identifiers: Orianna

ncbi_submitter: National Chung Cheng University


ncbi_country: Thailand

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Bacteroides cellulosilyticus


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Montreal


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_strain_identifiers: ATCC BAA-2108

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Rossellomorea aquimaris

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Denmark

ncbi_isolation_source: Milk

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Chr. Hansen


ncbi_assembly_name: freshwater MAG --- T7_bin-602

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_country: South Africa: Northern Cape Province

ncbi_isolation_source: Ear tissue

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Pretoria


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: maybe soil

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Italian National Institute of Health


ncbi_organism_name: Bradyrhizobium betae

ncbi_strain_identifiers: CECT 5829

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Devosia sp.

ncbi_submitter: UNESP-FCAV


ncbi_isolate: Prospectively collected (P)

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella variicola

ncbi_strain_identifiers: Prospectively collected (P)

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus saccharolyticus

ncbi_submitter: University hospital Lubeck


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Dubosiella newyorkensis


ncbi_country: Ireland: Lough Hyne

ncbi_isolation_source: marine sponge

ncbi_organism_name: Pseudovibrio sp. Ad14

ncbi_submitter: University College Cork


ncbi_country: South Korea: Chungnam Province

ncbi_isolation_source: rhizosphere of wild rye growing in a coastal sand dune area

ncbi_organism_name: Chryseobacterium rhizosphaerae

ncbi_submitter: University of the Free State


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-1529

ncbi_organism_name: uncultured Micrococcales bacterium


ncbi_country: Atlantic Ocean: Norwegian Sea; Soria Moria Vent Field Gallionella Garden

ncbi_isolation_source: biosyringe of iron mat from hydrothermal vent

ncbi_organism_name: Mariprofundus sp.

ncbi_submitter: University of Bergen


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Mesorhizobium sp. M1374

ncbi_submitter: Washington State University


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: OR

ncbi_isolation_source: Pork Chop

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


gtdb_type_species_of_genus: t

ncbi_organism_name: Micropruina glycogenica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: library

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Shenzhen University


ncbi_organism_name: Paenibacillus melissococcoides

ncbi_submitter: National Institute of Animal Health, National Agriculture and Food Research Organization


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces niveus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Fujita Health University


ncbi_organism_name: uncultured Lepagella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Melioribacteraceae bacterium


ncbi_organism_name: Microbacterium wangchenii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Vescimonas sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Atogen Co., Ltd.


ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Pakistan

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Cardiff University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Neobacillus drentensis

ncbi_submitter: Auburn University


ncbi_country: China: Nanjing

ncbi_isolation_source: soil

ncbi_organism_name: Flavobacterium sedimenticola

ncbi_submitter: Nanjing Agriculteral University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_isolation_source: stool specimen of one diarrheal patient

ncbi_organism_name: Campylobacter jejuni BJ-CJD101

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Michigan

ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Brazil

ncbi_isolation_source: stool

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Padova university


ncbi_country: China: Tengchong county; Yunnan; QQ pool

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_isolation_source: Albacore tuna-anal vent

ncbi_organism_name: Photobacterium angustum

ncbi_submitter: FDA/CFSAN


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_country: South Korea

ncbi_organism_name: Enterococcus sp. DA9

ncbi_submitter: Kyungpook National University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Streptomyces sp. NPDC047985

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Chicago

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Lebanon

ncbi_isolation_source: Fecal swab

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: IHU


ncbi_isolation_source: Poultry faeces

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: Ocean

ncbi_organism_name: Prochlorococcus marinus str. GP2

ncbi_submitter: MIT


ncbi_country: Canada: Quebec City

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus BAG1X1-2

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus BAG1X1-2


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Canada: Calgary

ncbi_isolation_source: blood

ncbi_submitter: University of Toronto


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Umbilicus swab

ncbi_organism_name: Helcococcus kunzii

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Canada: Edmonton

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG809

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: University of Waterloo


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_strain_identifiers: delta TY

ncbi_submitter: Fudan University


ncbi_organism_name: uncultured Anaerolinea sp.


ncbi_country: Italy

ncbi_isolation_source: salami paste production

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Leptolyngbya sp. AS-A6

ncbi_submitter: Institute of Hydrobiology


ncbi_country: USA: Mississippi

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Mississippi State University


ncbi_country: USA: Florida

ncbi_isolation_source: Mantle; Gill; Digestive Gland

ncbi_organism_name: Mycoplasma sp.

ncbi_submitter: Roger Williams University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces


ncbi_country: China: Guangzhou

ncbi_isolation_source: hospital patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Negativicutes bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;x__environmental samples;s__uncultured Negativicutes bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Romboutsia sp.

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Africa

ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: JCVI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China agricultural university


ncbi_country: USA: CO

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA/CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Colombia

ncbi_isolation_source: xylem

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: UC Davis


ncbi_organism_name: Streptomyces puniciscabiei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Beijing city

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tianjin Genskey Medical Technology Co., Ltd


ncbi_country: USA: New Hampshire; Henniker

ncbi_isolation_source: Contaminated Marine Agar

ncbi_organism_name: Cellulomonas fimi

ncbi_strain_identifiers: SB

ncbi_submitter: New England College


ncbi_organism_name: Moraxella veridica

ncbi_strain_identifiers: NCTC 4103

ncbi_submitter: SC


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_country: China: Hainan Island

ncbi_organism_name: Ferrimonas sp. SCSIO 43195

ncbi_strain_identifiers: SCSIO 43195

ncbi_submitter: South China Sea Institute of Oceanology,Chinese Academy of Sciences


ncbi_organism_name: Azospirillum brasilense

ncbi_submitter: UFRGS


ncbi_country: Cambodia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Malaysia

ncbi_isolation_source: Carnivorous Plant Phytotelma

ncbi_organism_name: Serratia sp. H1n

ncbi_submitter: University of Malaya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. H1n


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Queensland


ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolate: AOP36_B1_surf _bin _26

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP36_B1_surf _bin _26

ncbi_submitter: Genoscope


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_submitter: China Jiliang University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Bergen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Geodermatophilaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-142

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Limnobacter sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_isolation_source: sludge

ncbi_organism_name: Chryseobacterium sp. WX

ncbi_strain_identifiers: WX

ncbi_submitter: Peking University


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: USA: Louisiana

ncbi_isolation_source: trachea

ncbi_organism_name: Chromobacterium violaceum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium CG10_big_fil_rev_8_21_14_0_10_43_8


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: bglFP 6794

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Mexico: Mexico City

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Florida


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0304777.7

ncbi_submitter: IGS


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: London

ncbi_isolation_source: urine of adult cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacilli bacterium


ncbi_submitter: The University of Texas at San Antonio


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Leeuwenhoekiella blandensis


ncbi_country: Australia: Melbourne

ncbi_isolation_source: wound

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei 319a

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: Denmark: Viborg

ncbi_isolation_source: activated sludge from Vibo_18-Q3-R45-57


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Utrecht University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Zoogloea ramigera

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: USA:St. Louis

ncbi_isolation_source: Breast

ncbi_strain_identifiers: BIAI 160

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_isolation_source: marine metagenome


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: UT

ncbi_submitter: Dugway Proving Ground

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. tularensis;x__Francisella tularensis subsp. tularensis 80700069


ncbi_country: New Zealand

ncbi_organism_name: Novosphingobium nitrogenifigens DSM 19370


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudoalteromonas aliena

ncbi_submitter: University of Chicago


ncbi_isolate: SPRUCE 291

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 291

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_isolation_source: not provided

ncbi_organism_name: Streptococcus sanguinis


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: ZHOU

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Denmark

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Statens Serum Institut


ncbi_country: USA: Baltimore

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares-Genetics


ncbi_country: China: Shandong; Zhucheng

ncbi_isolation_source: soil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong university


ncbi_organism_name: Vibrio campbellii

ncbi_submitter: CIAD, A.C.


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Michigan


ncbi_country: USA: New York

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Ulvibacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: seeds

ncbi_organism_name: Sphingomonas sp. GC_Shp_4

ncbi_submitter: Agriculture Victoria


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-136

ncbi_submitter: Broad Institute


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: China: Zhejiang

ncbi_isolation_source: Chicken fecal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: China CDC


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: bacterium HR29

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 40cm depth; 2 days after first rain event (91mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium 13_1_40CM_4_68_19


ncbi_isolation_source: marine

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Cambridge Bay; NU

ncbi_isolation_source: Arctic soil

ncbi_organism_name: Glaciihabitans arcticus

ncbi_submitter: Kyonggi University


ncbi_country: Japan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Turkey

ncbi_isolation_source: traditional yogurt 1

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: TSGB 4230

ncbi_submitter: CENTRAL RESEARCH INSTITUTE OF FOOD AND FEED CONTROL


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D6_bin-291

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Russia

ncbi_isolation_source: obtained by multistage selection from a strain isolated from a natural source

ncbi_submitter: NRC Kurchatov Institute


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: cystic fibrosis sputum

ncbi_organism_name: Achromobacter dolens

ncbi_submitter: SC


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Colwellia sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Universitaetsklinikum Erlangen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Sphingobacterium multivorum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Thomasclavelia cocleata


ncbi_country: Japan:Shiga; Otsu; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Nanjing University


ncbi_submitter: Institute of Molecular Biology NAS Armenia


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Wenzhou Medical University


ncbi_submitter: University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Alaminos Canyon; Gulf of Mexico

ncbi_isolation_source: deep-sea cold seep carbonates

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: University of Queensland


ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 6 days

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Shantou University


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: India: Mumbai

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA: Morgantown

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: West Virginia University


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_country: Thailand: Yasothon

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Australia: Port Phillip Bay; Heron Island and Pacific Ocean; Munida Microbial Observatory Time Series

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of Turin


ncbi_country: Colombia: Narino

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Narino


ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Mahidol University


ncbi_country: China:Shandong province

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Shandong Provincial Hospital Affiliated to Shandong University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Neisseria perflava

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: dianzhenduan


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Picosynechococcus sp. PCC 7117

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG11349

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Aeromonadales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Smith

ncbi_submitter: Teikyo University Institute of Medical Mycology


ncbi_country: Italy

ncbi_isolation_source: salami paste production

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: France: Paris

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: China Center of Industrial Culture Collection


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus delbrueckii;sb__Lactobacillus delbrueckii subsp. bulgaricus;x__Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: subgingival dental plaque

ncbi_organism_name: Fusobacterium nucleatum subsp. nucleatum

ncbi_strain_identifiers: ChDC F317

ncbi_submitter: Chosun University


ncbi_country: Netherlands: Utrecht

ncbi_organism_name: Acinetobacter baumannii NIPH 1669

ncbi_strain_identifiers: NIPH 1669

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii NIPH 1669


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Pseudolysinimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: South Korea: Jeollabuk-do

ncbi_submitter: UNIST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis


ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Moscow

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG11361

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Portugal: Oporto

ncbi_isolation_source: Raw-frozen dog food

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_country: Denmark

ncbi_isolation_source: dairy

ncbi_organism_name: Leuconostoc mesenteroides subsp. mesenteroides

ncbi_submitter: Norwegian University of Life Sciences


ncbi_assembly_name: Salmonella enterica CVM N42482 v1.0

ncbi_country: USA: MO

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Filifactoraceae bacterium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Lachnoclostridium sp. UBA6558

ncbi_submitter: University of Queensland


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_assembly_name: freshwater MAG --- KT_bin-0898

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_organism_name: Enterococcus faecalis EnGen0328

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Caecum


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Agathobaculum hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_assembly_name: Ii

ncbi_isolate: Ii

ncbi_strain_identifiers: Ii

ncbi_submitter: DTU


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus durans

ncbi_submitter: SC


ncbi_country: Spain

ncbi_isolation_source: pig farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Laval


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_country: Norway

ncbi_organism_name: Vibrio cholerae O395

ncbi_submitter: University of Oslo


ncbi_organism_name: Anaeromyxobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Brachybacterium paraconglomeratum

ncbi_submitter: CSIR-NEERI


ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Japan

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Toho University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Air filter

ncbi_organism_name: Paenibacillus illinoisensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Chifeng

ncbi_isolation_source: leaf

ncbi_organism_name: Enterococcus sp. MMGLQ5-2

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CN18


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: Stony Brook University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M91141

ncbi_submitter: Broad Institute


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Bifidobacterium bifidum


ncbi_country: Australia: Waganaga Inlet

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: uncultured Armatimonadales bacterium

ncbi_submitter: Spribille Lab


ncbi_country: India: Trans-Himalayan region of Ladakh; Lotus Pond Hot Spring

ncbi_isolation_source: Hot spring water

ncbi_organism_name: bacterium

ncbi_submitter: Bose Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: Canada: Nunavut; Northern Canada; Alexandra Fiord

ncbi_isolate: AFD bin51

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: AFD bin51

ncbi_submitter: Monash University


ncbi_isolation_source: gill tissue

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: AOP5_CZ1_surf _bin _7

ncbi_organism_name: Brachybacterium tyrofermentans

ncbi_strain_identifiers: AOP5_CZ1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Glaesserella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae SGBS014

ncbi_submitter: MD Anderson Cancer Center


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Slovakia

ncbi_isolation_source: ovine cheese

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Faculty of Natural Sciences of the Comenius University in Bratislava


ncbi_country: China: Inner Mongolia; Ulanqab

ncbi_organism_name: Brucella melitensis bv. 3

ncbi_submitter: China centre for disease control and prevention


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: pickled vegetables

ncbi_organism_name: Lactobacillus sp. CAB1-7

ncbi_submitter: Chulalongkorn University


ncbi_assembly_name: Salmonella enterica CVM N51305 v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Pork Chops

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Johannesburg


ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: EMG


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Acholeplasma sp. CAG:878

ncbi_submitter: DTU


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Galligastranaerophilus;s__Candidatus Galligastranaerophilus intestinigallinarum


ncbi_organism_name: Lactococcus sp.


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Streptomyces sp. NPDC085944

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: UCSD Medical Center; San Diego; California

ncbi_isolation_source: Urinary tract

ncbi_organism_name: Escherichia coli

ncbi_submitter: Baylor College of Medicine


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_submitter: South China Agricultural University


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: Proteus sp. G4419

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4419


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: South Africa: Kwazulu-Natal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Carboxydothermus pertinax

ncbi_submitter: Laboratory of Marine Microbiology, Graduate School of Agriculture, Kyoto University


ncbi_country: Czech Republic

ncbi_isolation_source: bodily cavity

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_organism_name: uncultured Ulvibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Streptomyces galbus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: France: Paris

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Harbin

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces inhibens

ncbi_submitter: School of life science


ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: University of Florida


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_country: United Kingdom: Hatchlands

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Leclercia tamurae

ncbi_submitter: UWE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Benin: North agroecological zone

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: North West University


ncbi_country: USA: Michigan

ncbi_isolation_source: human feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Nebraska-Lincoln


ncbi_country: USA

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Rumen uncultured genome RUG11267

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptococcus parasuis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Peptoniphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPLOWO2_01_FULL_41_18


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Quebec

ncbi_isolation_source: Biofilm from a hand-washing sink faucet aerator in a neonatal intensive care unit

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institut national de la recherche scientifique


ncbi_country: China

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Pseudomonas promysalinigenes

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-4384

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sterolibacterium sp.

ncbi_submitter: BILS


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Nigeria

ncbi_isolation_source: Poultry spleen

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Uganda


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aquisalimonas sp. APHAB1-3

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Arsenicibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Vreelandella sulfidaeris

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Mycobacterium sp.


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Prolixibacteraceae bacterium


ncbi_isolate: AOP1_A1_surf _bin _7

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP1_A1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Ornithinimicrobium tianjinense


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_submitter: Huzhou CDC


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Xuzhou

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Arenibacter certesii DSM 19833

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter;s__Arenibacter certesii;x__Arenibacter certesii DSM 19833


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Functional Genome group, Center for Gene Research, Nagoya University


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Ureaplasma parvum

ncbi_submitter: EMG


ncbi_country: USA: OH

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Guangzhou

ncbi_isolation_source: roots

ncbi_organism_name: Kosakonia oryzae

ncbi_strain_identifiers: Ola 51

ncbi_submitter: Zhejiang university


ncbi_organism_name: Fusobacterium pseudoperiodonticum


ncbi_country: USA: Ohio

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: Denmark

ncbi_isolation_source: fish aquaculture

ncbi_organism_name: Phaeobacter piscinae

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Enterobacter hormaechei subsp. oharae

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. oharae


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium merycicum

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Brazil

ncbi_isolation_source: pecked egg organ

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Spain: Majorero

ncbi_isolation_source: Cheese rind

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_submitter: Dutton Lab, UCSD


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Aerococcus sp. HMSC06H08

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: urine

ncbi_submitter: JCVI


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Laboratory

ncbi_strain_identifiers: LT2 KO_STM3712

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Japan: Ago Bay; Honshu

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Hawaii-Manoa


ncbi_organism_name: Candidatus Salinivivens marinus

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Campylobacter sp. BCW_6879


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: Italy

ncbi_isolation_source: butter

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HANYANG UNIVERSITY


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: CA

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Thailand

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei


ncbi_assembly_name: Escherichia coli CVM N36404PS v. 1.0

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N36404PS


ncbi_organism_name: Serratia nevei


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium UBA6249


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: EMG


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Keri Norman's shared submissions


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV092

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Helmholtz Center Munich


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium freneyi

ncbi_submitter: Duke University


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: willow soil

ncbi_organism_name: Rhodococcus sp. WS4

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. WS4


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: Paraclostridium sordellii VPI 9048

ncbi_submitter: Kansas State University


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Peptoniphilus sp.

ncbi_submitter: University of California, Davis


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Peking University First Hospital


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: Blautia producta

ncbi_strain_identifiers: DSM 935

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: USA

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum of adult bronchiectasis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Neorhizobium galegae bv. officinalis

ncbi_submitter: UH


ncbi_country: Peru: Cuzco; Peruvian Andean Mountains

ncbi_isolation_source: salt creek water

ncbi_organism_name: Halomonas elongata

ncbi_submitter: Universidad Nacional de San Antonio Abad


ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Salmonella sp. L-S2582

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Sphaerochaeta sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Romboutsia timonensis

ncbi_submitter: EMG


ncbi_country: India: New Delhi

ncbi_isolation_source: Alkaline sludge

ncbi_organism_name: Exiguobacterium alkaliphilum

ncbi_submitter: Anhui Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium alkaliphilum


ncbi_country: India: Vellore

ncbi_isolation_source: stool

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Christian Medical College


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Proteus columbae

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: University of Calgary


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Longimicrobiales bacterium


ncbi_organism_name: Nonomuraea sp. NPDC050383

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Rariloculaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Rariloculales;f__Candidatus Rariloculaceae;x__unclassified Candidatus Rariloculaceae;s__Candidatus Rariloculaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Roseburia intestinalis


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Cycloclasticus sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Clostridium sp.


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Pikeienuella sp.

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Jumunjin; Gangwon-do

ncbi_organism_name: Fulvivirga ulvae

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: USA: GA

ncbi_isolation_source: stream

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_organism_name: Candidatus Alistipes merdipullorum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom: Yorkshire

ncbi_isolation_source: Pond mud

ncbi_organism_name: Rhodococcus coprophilus

ncbi_submitter: SC


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Italy

ncbi_isolation_source: milk bovine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: France

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: Paracoccaceae bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: WA

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Chengdu

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Yangzhou University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_organism_name: Escherichia sp. MOD1-EC5457


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica


ncbi_country: Spain

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces kutzneri

ncbi_submitter: Leibniz Institute DSMZ German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany


ncbi_country: China: Hengyang

ncbi_isolation_source: Liver puncture

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured delta proteobacterium


ncbi_organism_name: Thermomicrobium sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: uncultured Kingella sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobaculum sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. tularensis;x__Francisella tularensis subsp. tularensis FSC033


ncbi_organism_name: Nisaea sp.

ncbi_submitter: University of Southern California