ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


gtdb_representative: f

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: Dairy starter

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Radboudumc


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Affiliated Wenling Hospital


ncbi_isolation_source: Environment

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_country: Russia: Elista

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russian Research Anti-plague Institute "Microbe"


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Sweden

ncbi_isolation_source: Anopheles gambiae G3 adults

ncbi_organism_name: Elizabethkingia anophelis R26

ncbi_refseq_category: reference genome

ncbi_submitter: CDC

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Blood


ncbi_organism_name: Streptomyces sp. NPDC093023

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Megamonas sp.

ncbi_submitter: EMG


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Academia Sinica


ncbi_country: Democratic Republic of the Congo: Kinshasa

ncbi_isolation_source: fecal samples

ncbi_submitter: IHU Mediterranee Infection


ncbi_assembly_name: Salinibacter ESAV49

ncbi_organism_name: Salinibacter pepae

ncbi_submitter: IMEDEA


ncbi_country: China: Shandong

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_organism_name: Neisseria meningitidis


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Lebanon

ncbi_isolation_source: Environmental Samples 3

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wyoming


ncbi_organism_name: uncultured Duodenibacillus sp.


ncbi_organism_name: Faecalimonas sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 135 (4-4449320)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 135 (4-4449320)


ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_country: Czech Republic: Jiricka reservoir

ncbi_isolation_source: humic pond in Novohradske mountains

ncbi_organism_name: Limnohabitans sp. JirII-31

ncbi_submitter: Biology Centre CAS


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-083


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium sp. AF28-13AC

ncbi_submitter: BGI


ncbi_country: Australia: Gosse; Kangaroo Island

ncbi_isolation_source: Smooth Fringe-Myrtle

ncbi_organism_name: Fructilactobacillus myrtifloralis

ncbi_submitter: The University of Adelaide


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli

ncbi_submitter: Health Protection Agency


ncbi_country: USA: WA

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: University of Washington


ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: Ngtc NS 18

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-0915

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


gtdb_type_species_of_genus: t

ncbi_organism_name: Piscicoccus intestinalis NBRC 104926

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Canada: Rouyn-Noranda

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Beijing

ncbi_isolation_source: anammox reactor sludge

ncbi_organism_name: Candidatus Brocadia sp.

ncbi_submitter: Peking University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp.


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Curtobacterium poinsettiae

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_country: Kenya: Kajiado County

ncbi_isolation_source: termite gut

ncbi_organism_name: Fusobacteriales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: plant roots

ncbi_strain_identifiers: ATCC 9446

ncbi_submitter: Biotechnology Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. chlororaphis


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Listeria rocourtiae

ncbi_strain_identifiers: CECT 7972

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_isolation_source: cecum

ncbi_organism_name: Anaerotignum lactatifermentans

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: USDA ARS


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Freshwater sediment

ncbi_organism_name: bacterium

ncbi_submitter: Aarhus University


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Campylobacterales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_isolate: AOP25_C1_surf _bin _4

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP25_C1_surf _bin _4

ncbi_submitter: Genoscope


ncbi_organism_name: Chryseobacterium sp. CBSDS_008

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_isolate: AOP36_B1_surf _bin _30

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP36_B1_surf _bin _30


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eubacterium callanderi


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_submitter: Lund University


ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_assembly_name: Rumen uncultured genome RUG12681

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Sri Lanka: Colombo

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Serbia: Karavukovo

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Vibrio cidicii

ncbi_submitter: University of Copenhagen, Faculty of Health and Medical Sciences


ncbi_country: Antarctica: Mackay Glacier regions; Towle Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Phycisphaerae bacterium


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EBI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Singapore

ncbi_isolation_source: liver abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Melbourne


ncbi_assembly_name: IMG-taxon 2690315629 annotated assembly

ncbi_organism_name: Paenibacillus sp. OV219

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Denmark

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_isolation_source: food

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: USA: Idaho

ncbi_isolation_source: biofilm from indoor freshwater fish hatchery

ncbi_organism_name: Pseudomonas idahonensis

ncbi_submitter: University of Connecticut Graf Lab


ncbi_country: Netherlands

ncbi_isolation_source: NPS

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_41_27


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Israel

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: microbial mat

ncbi_organism_name: Synechococcales cyanobacterium PMM_0099

ncbi_submitter: University of Liege


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Halalkalibacter urbisdiaboli

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Kenya

ncbi_organism_name: Porphyromonadaceae bacterium UBA7583

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aggeu Magalhaes Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_country: Brazil: Presidente Prudente

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: Red leaf vegetables

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Salmonella Syst-OMICS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_56_12


ncbi_organism_name: Devosia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Colombia

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institute


ncbi_country: China: Nanchang

ncbi_isolation_source: fermented soybeans

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: marine

ncbi_organism_name: Methylophaga sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Avelusimicrobium bubulum

ncbi_submitter: Nanjing Agricultural University


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: Penaeus vannamei pond water

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Ocean University of China


ncbi_country: China: Henan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: urine

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Alloalcanivorax dieselolei

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Trueperella sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China Agricultural University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_country: China: Gansu

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Brazil: Roraima

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: USA

ncbi_isolation_source: pasteurized milk

ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: Cornell University


ncbi_organism_name: Pseudomonas syringae group genomosp. 3

ncbi_submitter: JLU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3


ncbi_country: Portugal

ncbi_isolation_source: bronchial secretions

ncbi_submitter: Max Rubner-Institut


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: environmental

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Colombia: Narino

ncbi_isolation_source: water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caecimuris


ncbi_country: Colombia

ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: The McGill University and Génome Québec Innovation Centre


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 13ft depth

ncbi_organism_name: Chloroflexi bacterium RBG_13_51_36

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium RBG_13_51_36


ncbi_organism_name: Streptomyces sp. NPDC088733

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Aphanizomenon sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Salmonella sp. NW92

ncbi_submitter: Sichuan University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Research and Innovation Agency


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium RIFCSPHIGHO2_02_FULL_45_10


ncbi_organism_name: Vibrio cholerae HFU-02

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Norway: Viken

ncbi_isolation_source: teat swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0617

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacillus cereus


ncbi_country: Germany

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: Ornithinibacillus sp. 4-3

ncbi_submitter: The Institute of Microbiology of the National Academy of Sciences of Belarus


ncbi_country: Kazakhstan: West-Kazakhstan

ncbi_isolation_source: tissue

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_isolation_source: Stool Culture

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Broad Institute


ncbi_country: USA: North Carolina; Charlotte

ncbi_isolation_source: soil

ncbi_organism_name: Acidovorax carolinensis

ncbi_submitter: University of North Carolina - Chapel Hill


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: Mexico: Zapotitlan de las Salinas; Puebla

ncbi_organism_name: Pectobacterium polaris

ncbi_submitter: UNAM FES IZTACALA


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal University of Uberlandia


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chicago


ncbi_country: Pacific Ocean: South Pacific

ncbi_organism_name: Pseudoalteromonas ruthenica

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_48_180


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptomyces sp. NPDC052015

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Akkermansiaceae bacterium UBA2381

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Hungary: Szeged wastewater treatment plant

ncbi_isolation_source: Anaerobic sludge from Szeged Municipal wastewater plant s biogas plant Biogas Plant

ncbi_submitter: University of Szeged


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Australia: Cummings Reserve; Port Phillip Bay site B intermediate

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1225

ncbi_submitter: Broad Institute


ncbi_country: Italy

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Southampton


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_country: China: Heibei province

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Beijing Institute of Biotechnology


ncbi_country: China: Shanghai

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. SHSN012


ncbi_assembly_level: Chromosome

ncbi_country: USA: Blue River Reservoir; Oregon

ncbi_isolation_source: freshwater lake cyanobacterial bloom; sample filtered onto 1.2 um poresize filter

ncbi_organism_name: Dolichospermum sp. BR01

ncbi_submitter: Oregon State University


ncbi_isolation_source: East Sea

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Comenius University Science Park


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Carson; CA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Hydrogenoanaerobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-5883

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Francisellaceae bacterium

ncbi_submitter: BILS


ncbi_country: Antarctica: Deception Island; Kroner lake hot spring

ncbi_isolation_source: non-acidic hot spring microbial mat

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus agalactiae STIR-CD-23

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: United Kingdom: WCO station L4

ncbi_isolation_source: marine bulk water (WCO station L4)

ncbi_organism_name: Gammaproteobacteria bacterium F7

ncbi_submitter: University of East Anglia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus


ncbi_country: USA: Florida

ncbi_organism_name: Amycolatopsis rubida

ncbi_submitter: University of Wisconsin Madiso


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Finland

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Queensland


ncbi_assembly_name: Burkholderia  cenocepacia BCC0575

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Megasphaera;s__Megasphaera vaginalis (ex Srinivasan et al. 2021)


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Comamonas aquatica

ncbi_submitter: NEB


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Mycovorax composti

ncbi_submitter: The University of Sydney


ncbi_country: Peru

ncbi_submitter: SC


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shenzhen

ncbi_organism_name: Halomonas denitrificans

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: China: 69 Yongding Road; Haidian District; Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Medical University


ncbi_country: China: Central China Fuwai Hospital of Zhengzhou University

ncbi_isolation_source: Bronchoalveolar Fluid from patient

ncbi_submitter: YangZhou university


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_43_11


ncbi_country: China

ncbi_organism_name: Trichormus variabilis FACHB-319

ncbi_submitter: South China Normal University


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: Sil NS 25

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_assembly_name: Rumen uncultured genome RUG11911

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Curtobacterium sp. SORGH_AS_0776

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M42507

ncbi_submitter: Broad Institute


ncbi_country: Germany: Bruschal

ncbi_isolation_source: Geothermal isolate

ncbi_organism_name: Anoxybacillus sp. B7M1

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Hospital sewage

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Tokyo Medical and Dental University


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: cecal contents

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: Sulfitobacter sp. 1A09368

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Chloroflexales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG13022

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_country: USA: MO

ncbi_isolation_source: curry white meat chicken salad with walnut

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_submitter: University of Basel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Vulcanimicrobiota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Thermotoga neapolitana

ncbi_submitter: University of Queensland


ncbi_organism_name: Sphingomonas sp. OTU376

ncbi_submitter: The University of Chicago


ncbi_country: Russia: south Siberia; Altai; Kulunda Steppe

ncbi_organism_name: Halospina denitrificans

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolate: SPRUCE 492

ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 492

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


ncbi_country: USA: UC Davis campus (California)

ncbi_isolation_source: PO:0025082 | flower nectar

ncbi_organism_name: Acinetobacter rathckeae

ncbi_submitter: Cornell University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: stool

ncbi_organism_name: Schaalia turicensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum;x__Mycobacterium tuberculosis variant africanum MAL020135


ncbi_isolate: Pediococcus parvulus IOEB-9646

ncbi_organism_name: Pediococcus parvulus

ncbi_strain_identifiers: Pediococcus parvulus IOEB-9646

ncbi_submitter: INRAE


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: sputum of patients with cystic fibrosis

ncbi_organism_name: Herbaspirillum frisingense

ncbi_submitter: Carlos Chagas Institute - FioCruz


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Stenotrophomonas sp. 1278


ncbi_isolation_source: saliva

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus salivarius;x__Ligilactobacillus salivarius DSM 20555 = ATCC 11741


ncbi_assembly_name: freshwater MAG --- KT3_bin-378

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Italy

ncbi_isolation_source: bovine cheese blue

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Candidatus Faecimonas intestinavium

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Faecimonas;s__Candidatus Faecimonas intestinavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Faecimonas;s__Candidatus Faecimonas intestinavium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aggregatilineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Institute of Animal Husbandry and Veterinary, Hubei Academy of Agricultural Sciences


ncbi_organism_name: Meiothermus sp.

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Parvimonas micra


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA7270

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__candidate division WOR-1 bacterium RIFCSPHIGHO2_02_FULL_53_26


ncbi_country: China: Shanghai

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Ocean University


ncbi_country: USA: Rhode Island

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Health Canada


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Cellvibrio sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acetobacter oeni

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Czech Republic

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Treponema sp. UBA4319


ncbi_assembly_name: Rumen uncultured genome RUG10143

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northumbria University


ncbi_organism_name: Candidatus Fermentibacter danicus

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-2119

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Zhejiang University


ncbi_isolation_source: stinky xiancaigeng

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: India: Vellore

ncbi_isolation_source: Respiratory specimen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College, Vellore


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Shiraz

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas sp. SWRI 103

ncbi_strain_identifiers: SWRI 103

ncbi_submitter: Zanjan University of Medical Sciences


ncbi_organism_name: Oerskovia paurometabola


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: acrmu

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium animalis


ncbi_country: Nigeria

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_submitter: Dutch CPE surveillance study group


ncbi_country: USA: Durham; North Carolina

ncbi_isolation_source: Mouse feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Duke University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Peptoniphilus harei ACS-146-V-Sch2b

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Atlantic Ocean: Rainbow Hydrothermal Vent

ncbi_isolation_source: water from hydrothermal vent

ncbi_organism_name: Thermosipho sp. 1223

ncbi_submitter: University of Oslo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;o__Thermotogales;f__Fervidobacteriaceae;g__Thermosipho;x__unclassified Thermosipho (in: thermotogales);s__Thermosipho sp. 1223


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Ardenticatenaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_organism_name: Salmonella sp. 2020_1395

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Bradyrhizobium sp. Pha-3

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Umezakia ovalisporum BLCC-F215

ncbi_submitter: University of Florida


ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: Monash University


ncbi_assembly_name: x

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Forsyth Institute


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Nitrososphaerota archaeon

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Archaea;x__Thermoproteati;p__Nitrososphaerota;x__environmental samples;s__uncultured Nitrososphaerota archaeon


ncbi_country: USA: WI

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: CDC


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1222

ncbi_submitter: Broad Institute


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Japan

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Yonsei University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Succinatimonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Phreatobacter sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Norway: Telemark

ncbi_isolation_source: blood

ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Universidad de Concepcion


ncbi_country: Argentina: Tandil

ncbi_isolation_source: Ground beef

ncbi_submitter: Universidad de Chile


ncbi_country: Russia: Republic of Karelia; Olonetsky district

ncbi_isolation_source: intestine

ncbi_organism_name: Yersinia mollaretii

ncbi_strain_identifiers: 1472 StPb PI

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Alphaproteobacteria bacterium UBA3650

ncbi_submitter: University of Queensland


ncbi_country: France: Lyon

ncbi_isolation_source: chicken gut microbiome

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Bioaster


ncbi_organism_name: Christiangramia forsetii KT0803

ncbi_submitter: Max Planck Institute for Molecular Genetics


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Pseudokineococcus lusitanus

ncbi_strain_identifiers: CECT 7306

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: New York

ncbi_isolation_source: Ricotta/mozzarella whey

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cornell University


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F84093


ncbi_organism_name: Bacillus atrophaeus ATCC 49822-1

ncbi_submitter: Transformational Medical Technologies Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus atrophaeus;x__Bacillus atrophaeus ATCC 49822;x__Bacillus atrophaeus ATCC 49822-1


ncbi_country: Ghana: Nima Market; Accra

ncbi_isolation_source: wagashi (unripened soft cheese)

ncbi_strain_identifiers: NRWCIIIB

ncbi_submitter: Alborada Research Fund

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Legon


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Georgia Tech


ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_country: Netherlands

ncbi_isolation_source: Primary rapid sand filter

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Radboud University


ncbi_country: China

ncbi_isolation_source: gastric juice

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Germany

ncbi_isolation_source: Wound swab knee

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SurvCARE


ncbi_country: Malaysia

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium kefirresidentii

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Bradyrhizobium sp. SZCCHNS2005

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: burned soil

ncbi_organism_name: Sphingomonas bacterium

ncbi_submitter: Colorado State University


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: supragingival plaque biofilm of a molar

ncbi_organism_name: Leptotrichia wadei F0279

ncbi_submitter: Washington University


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_assembly_name: Rumen uncultured genome RUG306

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Faecalibaculum rodentium


ncbi_isolation_source: Human feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_strain_identifiers: KCTC 3420

ncbi_submitter: Korea University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Alberta

ncbi_isolation_source: Culture Media

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: China: Hangzhou

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Antarctic marine sediment

ncbi_organism_name: Labilibaculum antarcticum

ncbi_submitter: The Institute of Low Temperature Science, Hokkaido University


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Dysgonamonadaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Adekunle Ajasin University


ncbi_country: Serbia

ncbi_isolation_source: plants rhizosphere

ncbi_organism_name: Streptomyces sp. BV286

ncbi_submitter: Fraunhofer IGB


ncbi_assembly_name: IMG-taxon 2687453785 annotated assembly

ncbi_organism_name: Pseudomonas anguilliseptica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Serratia nematodiphila WCU338

ncbi_submitter: OSU/OARDC


ncbi_country: Egypt

ncbi_isolation_source: beeswax

ncbi_organism_name: Apilactobacillus sp. EABW-1NA

ncbi_submitter: Faculty of Pharmacy, Cairo University


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. K6687

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K6687


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Streptomyces sp. WAC 04229

ncbi_submitter: BGI Research


ncbi_country: India

ncbi_organism_name: Oceanospirillum sanctuarii

ncbi_submitter: CSIR-IMTECH


ncbi_organism_name: Candidatus Aminicenantia bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;x__unclassified Candidatus Aminicenantia;s__Candidatus Aminicenantia bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: vegetation: urban-playground

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: USA: MO

ncbi_isolation_source: intestine

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Essen


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: Lund University


ncbi_isolation_source: raw milk for cow(Bos taurus)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Meiji Co., Ltd


ncbi_country: Colombia: Cali

ncbi_isolation_source: liver

ncbi_submitter: University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Zhengzhou

ncbi_isolation_source: stool

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Urbifossiella sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: isolated from Haemaphysalis longicornis

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Scientific Centre for Family Health and Human Reproduction Problems


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Bloodstream

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: USA: Riverside; Ca

ncbi_isolation_source: gut

ncbi_organism_name: Apilactobacillus timberlakei

ncbi_submitter: University of California, Riverside


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: USA: Arizona

ncbi_isolation_source: Gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;x__unclassified Candidatus Krumholzibacteriota;s__Candidatus Krumholzibacteriota bacterium


ncbi_organism_name: Salmonella enterica

ncbi_strain_identifiers: P07.1 FEA

ncbi_submitter: Faculdade de Ciencias Farmaceuticas de Ribeirao Preto


ncbi_assembly_name: IMG-taxon 2596583570 annotated assembly

ncbi_organism_name: Rhizobium mongolense subsp. loessense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Rubritalea sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Magallanes

ncbi_organism_name: Tenacibaculum piscium

ncbi_submitter: Universidad Bernardo O`Higgigins


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Taklimakanibacter lacteus

ncbi_strain_identifiers: SYSU D60012

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: human gut metagenome


ncbi_organism_name: Bacillus cereus group sp. MYBK111-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK111-1


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pluranimalium

ncbi_submitter: The Centre for Infectious Disease Genomics and One Health, Simon Fraser University


ncbi_isolate: SPRUCE 254

ncbi_organism_name: Roseiarcus sp.

ncbi_strain_identifiers: SPRUCE 254

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Hydrogenophaga sp.


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aarhus University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 40cm depth; 6 days after first rain event (27mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__unclassified Gemmatimonadota;s__Gemmatimonadetes bacterium 13_1_40CM_3_69_22


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Eubacterium sp. CAG:841

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:841


ncbi_country: Ireland

ncbi_isolation_source: Environment

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 71.E.05


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Bacillus sp. FSL K6-0042

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-0042


ncbi_country: Thailand: Khon Kean

ncbi_isolation_source: vagina

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: RCEID, Khon Kaen University


ncbi_organism_name: Olsenella sp. DNF00959

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 158


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Ghana: Takoradi

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Bhutan

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Armed Forces Research Institute of Medical Sciences (AFRIMS)


ncbi_country: Japan

ncbi_isolation_source: Light organ; Physiculus japonicus

ncbi_organism_name: Photobacterium kishitanii

ncbi_strain_identifiers: ATCC BAA-1194

ncbi_submitter: FDA/CFSAN


ncbi_country: Belgium: Ghent

ncbi_organism_name: Xanthobacter sp. NM-25

ncbi_submitter: Ghent University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: Sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Escherichia coli B str. REL606

ncbi_submitter: International E. coli B Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli B str. REL606


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: urine

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Streptococcus sp. Marseille-Q5986

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Microbacteriaceae bacterium


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria elongata

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cycloclasticus sp.

ncbi_submitter: University of Calgary


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: Hepatobiliary surgery

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Nioella sp.

ncbi_submitter: EMG


ncbi_organism_name: Rhodococcus sp. M8-33

ncbi_submitter: Research Institute for Genetics and Selection of Industrial Microorganisms(Genetika)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. M8-33


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Sao Bento do Una

ncbi_isolation_source: fecal sample

ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Oenococcus kitaharae DSM 17330

ncbi_submitter: The Australian Wine Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Oenococcus;s__Oenococcus kitaharae;x__Oenococcus kitaharae DSM 17330


ncbi_isolation_source: garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_country: Canada: Laval

ncbi_isolation_source: roots

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: National Research Council Canada


ncbi_organism_name: Proteus terrae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter hepaticus ATCC 51449

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;o__Candidatus Absconditabacterales;x__unclassified Candidatus Absconditabacterales;s__Candidatus Absconditabacterales bacterium


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella sp. k3

ncbi_submitter: UMCG


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_isolation_source: Caecum


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Litorivivens sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Methylobacter sp. BBA5.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: laboratory

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_organism_name: Veillonella parvula


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Ares Genetics


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Universidad de Leon


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Pseudothioglobus singularis

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus singularis


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: South Korea: Daechung Reservoir

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Alteraquisediminimonas sediminicola

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: China Agricultural University


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-092

ncbi_submitter: Broad Institute


ncbi_assembly_name: Salmonella enterica CVM N41746-SQ v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Pork Chop

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Japan: Chubu

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Leicester


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: OH

ncbi_isolation_source: cantaloupe

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Belgium: Ghent

ncbi_organism_name: Hydrogenophaga sp. NFH-34

ncbi_submitter: Ghent University


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Brevundimonas sp. MYb31

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Methylococcaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Lagierella sp. ICN-221743

ncbi_submitter: Seoul National University


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFCSPHIGHO2_01_FULL_47_10


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Candidatus Nemicrothrix sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__environmental samples;s__uncultured Candidatus Nemicrothrix sp.


ncbi_organism_name: Streptomyces sp. NPDC048257

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salmonella sp. NW986

ncbi_submitter: Sichuan University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: low severity burned soil

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: China

ncbi_isolation_source: seawater surrounding coral Acropora digitifera under normal condition

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: EPFL


ncbi_isolation_source: water

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Shandong First Medical University


ncbi_country: USA: FL

ncbi_isolation_source: vagina of a dog

ncbi_organism_name: Mycoplasmopsis canis UF33

ncbi_submitter: University of Florida


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Clostridiaceae bacterium DJF_LS40

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: United Kingdom: England

ncbi_isolation_source: England

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: WSLC 1019

ncbi_submitter: ETH Zurich


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: Peristernal Abscess

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: American University of Beirut


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Syntrophomonas sp. UBA4844

ncbi_submitter: University of Queensland


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Ruminococcus flavefaciens


ncbi_isolation_source: sputum


ncbi_country: China: HaiKou

ncbi_organism_name: Rhodococcus sp. HNM0563

ncbi_submitter: Hainan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. HNM0563


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Tenacibaculum dicentrarchi

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany

ncbi_isolation_source: Pork meat

ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: Grenada 9-1

ncbi_submitter: CIRAD


ncbi_organism_name: Clostridiales bacterium VE202-16

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Iamiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Rumen uncultured genome RUG14853

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Lentisphaerota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__environmental samples;s__uncultured Lentisphaerota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Dubosiella newyorkensis


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Korean adult feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Korea Food Research Institute


ncbi_country: India: Nagpur

ncbi_isolation_source: soil from municipal solid waste dump site

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CSIR-National Environmental Engineering Research Institute (NEERI)


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_organism_name: Mycoplasmataceae bacterium


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Canada: Alberta

ncbi_isolation_source: necrotic leaf

ncbi_organism_name: Pseudomonas lurida

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Rossellomorea marisflavi

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Turkey

ncbi_isolation_source: Raw milk

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of manitoba


ncbi_country: Peru

ncbi_organism_name: Vibrio cholerae 1587

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_organism_name: Dactylosporangium aurantiacum

ncbi_submitter: CSIR-Central Salt and Marine Chemical research institute


ncbi_country: Austria: Vienna

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Mycobacterium pseudoshottsii JCM 15466

ncbi_submitter: Waseda University, Research Organization for Nano and life Innovation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium ulcerans group;s__Mycobacterium pseudoshottsii;x__Mycobacterium pseudoshottsii JCM 15466


ncbi_country: USA

ncbi_isolation_source: MISC

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI