ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 221

ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_strain_identifiers: SNUC 4525

ncbi_submitter: University of Calgary


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_isolation_source: chicken meat

ncbi_submitter: Division of Biomedical Food Research, National Institute of Health Sciences, NIHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kiambu


ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptomyces flaveus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: England

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Neisseria yangbaofengii

ncbi_submitter: Chinese center for disease control and prevention


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina

ncbi_isolation_source: bone

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Kpn 2KP

ncbi_submitter: Universidad de Buenos Aires


ncbi_country: China

ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_country: Thailand: Pathumthani

ncbi_isolation_source: fermented meat (Nham)

ncbi_organism_name: Lactococcus sp. NH2-7C

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_strain_identifiers: PEER 350

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


gtdb_representative: t

ncbi_country: Atlantic Ocean: Sargasso Sea; BATS

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; marine water

ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Anaeroplasmataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Microcoleus sp. LEGE 07076

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Agrobacterium fabrum str. C58

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Agrobacterium;x__Agrobacterium tumefaciens complex;s__Agrobacterium fabrum;x__Agrobacterium fabrum str. C58


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Atribacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;x__environmental samples;s__uncultured Atribacterota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Colon


ncbi_country: USA: St. Louis; Missori

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: USDA


ncbi_country: China: JiangSu

ncbi_isolation_source: Suppuration

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Enterobacter sp. BA-045-C-ECC

ncbi_submitter: TRAPREA


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: The Algerian Ministry of Higher Education and Scientific Research


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Guangxi Minzu University


ncbi_organism_name: Embleya sp. NPDC008237

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Sweden: near Abisko

ncbi_isolation_source: freshwater lake sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of California, Davis


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: Madurai Kamaraj University


ncbi_country: Brazil: Uberaba

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Ghana

ncbi_isolation_source: hospital surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cardiff University


ncbi_country: South Africa: Hlabisa

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0050

ncbi_submitter: Broad Institute


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of Alberta


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acinetobacter sp. FL

ncbi_strain_identifiers: FL

ncbi_submitter: Dalian University of Technology


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Jiuzhaigou

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: New Mexico State University


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_isolate: metabat2_coassembly_bwa.555 MAG

ncbi_strain_identifiers: metabat2_coassembly_bwa.555 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: USA: HI

ncbi_isolation_source: albacore tuna anal vent

ncbi_organism_name: Photobacterium angustum

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Duncaniella muris


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Harvard University


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_submitter: Sungkyunkwan University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Vibrio natriegens

ncbi_submitter: Universidad de los Andes


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Acetobacter sp. DmW_125135

ncbi_submitter: Brigham Young University


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_country: USA: Peoria

ncbi_isolation_source: Hot Dogs

ncbi_submitter: United States Department of Agriculture


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: USA

ncbi_isolation_source: Cecal Young Chicken

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: CVM N48647F

ncbi_submitter: FDA


ncbi_isolation_source: feces day 0 after weanning

ncbi_submitter: University of Alberta


ncbi_country: France: Caen

ncbi_isolation_source: parent strain V19 with nagY gene deletion

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Rouen Normandy University


ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: USA: Goucher College; Baltimore; Maryland

ncbi_isolation_source: skin mucus

ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: Goucher College


ncbi_country: Canada: Alberta

ncbi_isolation_source: C-Section Wound

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: uncultured Pantoea sp.

ncbi_submitter: EMG


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: 2403MB;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0851

ncbi_submitter: Broad Institute


ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Panama: Cristobal

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha taylori


ncbi_country: China: Yantai

ncbi_isolation_source: soil from an abandoned saltern

ncbi_organism_name: Echinicola salinicaeni

ncbi_refseq_category: reference genome

ncbi_submitter: Shandong Univesity

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_organism_name: Escherichia coli O157:H7 str. K1420

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K1420


ncbi_isolation_source: Hydrophilus acuminatus

ncbi_organism_name: Diaphorobacter sp. HDW4B

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Guangxi

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_country: Japan: Tarama Hill; Okinawa Trough

ncbi_isolation_source: sponge from the Crane site of a hydrothermal vent

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: HKUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Enterobacter sp. SENG-6

ncbi_submitter: University of Minnesota


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Kyrgyzstan: Oshskaya Region; Alayskiy District

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute 'Microbe'


ncbi_isolation_source: stool

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Humaya River; Adolfo Lopez Mateos dam

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: Australia

ncbi_isolation_source: surgical site

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_country: China: Guangdong

ncbi_isolation_source: air medium

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Equipe PHySE - HydroSciences Montpellier


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Italy: Sassari

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_country: China: Szechuan

ncbi_isolation_source: Pit mud of baijiu fermentation

ncbi_organism_name: Sphingomonas beigongshangi

ncbi_submitter: Beijing Technology and Business University


ncbi_organism_name: Streptomyces sp. FR-108

ncbi_submitter: Instituto Politecnico Nacional


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudobutyrivibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Prevotella sp. UBA3211

ncbi_submitter: University of Queensland


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC058762

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Denitrobaculum sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Glaciecola siphonariae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Candidatus Aphodovivens avicola

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__;f__;g__Candidatus Aphodovivens;s__Candidatus Aphodovivens avicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;x__Coriobacteriia incertae sedis;g__Candidatus Aphodovivens;s__Candidatus Aphodovivens avicola


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Mycolicibacterium septicum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Parvicellaceae bacterium


ncbi_isolate: AOP31_B2_surf _bin _27

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_strain_identifiers: AOP31_B2_surf _bin _27

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Candidatus Nanosyncoccus sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__environmental samples;s__uncultured Candidatus Nanosyncoccus sp.


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Egerieisoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Egerieisoma;x__unclassified Candidatus Egerieisoma;s__Candidatus Egerieisoma sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: AAFC


ncbi_country: USA: MO

ncbi_isolation_source: organ

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_organism_name: Delftia lacustris

ncbi_submitter: Boudreau Lab


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: marine

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Maryland


ncbi_country: Germany: Hesse; Gross-Gerau

ncbi_isolation_source: rectal swab

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-353

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-353


ncbi_country: Atlantic Ocean

ncbi_isolation_source: water

ncbi_organism_name: Pseudoalteromonas sp. CST5

ncbi_submitter: Michigan Technological University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Georgia


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Dialister invisus

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Netherlands

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Marinosulfonomonas sp.

ncbi_submitter: Portland State University


ncbi_assembly_level: Chromosome

ncbi_organism_name: Chlamydia psittaci 01DC12

ncbi_submitter: Moredun Research Institute


ncbi_isolation_source: water plus sediment from saline lagoon

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: CIICAM


ncbi_country: Cambodia:Phnom Penh

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Chile: Valparaiso

ncbi_submitter: P Universidad Catolica de Valparaiso


ncbi_assembly_name: IMG-taxon 2657245716 annotated assembly

ncbi_organism_name: Streptomyces sp. PpalLS-921

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: Indonesia

ncbi_organism_name: Apilactobacillus kunkeei

ncbi_strain_identifiers: LAni

ncbi_submitter: Uppsala university


ncbi_country: China: Sichuang

ncbi_isolation_source: fish viscera

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Harvard University


ncbi_country: Spain: Bilbao

ncbi_isolation_source: cheese

ncbi_strain_identifiers: LBMM 896

ncbi_submitter: Instituto Tecnologico Agrario de Castilla y Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Italy

ncbi_isolation_source: MRS

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: SEED HEALTH INC


ncbi_isolation_source: oral

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Siena


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: UNICAMP


gtdb_type_species_of_genus: t

ncbi_organism_name: Atlantibacter hermannii NBRC 105704

ncbi_submitter: National Institute of Technology and Evaluation (NITE)


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-3713

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_country: USA: New York City

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_organism_name: Deinococcus wulumuqiensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Spain: Seville

ncbi_isolation_source: Tracheobronchial aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Biomedicine of Seville (IBiS)


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_country: South Korea

ncbi_isolation_source: Oral microbiome

ncbi_organism_name: Streptococcus sp. NM

ncbi_strain_identifiers: NM

ncbi_submitter: Jeju National University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Germany

ncbi_isolation_source: Packed chicken meat

ncbi_organism_name: Photobacterium carnosum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Chryseobacterium sp. Alg-005

ncbi_submitter: Biological and Chemical Sciences, The University of the West Indies, Cave Hill Campus


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: South China Agricultural University


ncbi_country: Portugal: Aveiro

ncbi_isolation_source: Intraabdominal infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Stenotrophomonas sp. C3(2023)

ncbi_submitter: Mahatma Gandhi University


ncbi_organism_name: Mesorhizobium sp. M0772

ncbi_submitter: Washington State University


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Microbispora rosea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Arthrobacter sp. IK3

ncbi_submitter: Sathyabama Institute of Science and Technology


ncbi_isolation_source: Farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Nottingham


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_submitter: Shanghai CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Welikade


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_isolation_source: pasta filata cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_submitter: University hospital Lubeck


ncbi_submitter: The University of Auckland


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: China: Inner Mongolia Autonomous Region

ncbi_isolation_source: desert sand

ncbi_organism_name: Modestobacter italicus

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: Rhodococcus sp. IEGM 1370

ncbi_strain_identifiers: IEGM 1370

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. IEGM 1370


ncbi_organism_name: Antricoccus sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Spain: Valencia; MalvaRosa Beach

ncbi_isolation_source: Marine residues

ncbi_organism_name: Gillisia lutea

ncbi_submitter: Institute for Integrative Systems Biology (University of Valencia-CSIC)


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USFDA


ncbi_country: USA: California; Berkeley

ncbi_isolation_source: aquatic sediment

ncbi_organism_name: Escherichia sp. JL983

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Russia: Pacific Ocean; Rudnaya Bay

ncbi_isolation_source: unidentified actinians

ncbi_organism_name: Pontibacter actiniarum


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: India: Akola; Maharashtra

ncbi_isolation_source: Rhizhosphere

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: BITS-Pilani, Hyderabad campus


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Helicobacter sp.


ncbi_country: Russia: Ekaterinburg

ncbi_isolation_source: lungs

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Penn State


ncbi_organism_name: Peribacillus sp. NPDC097224

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Korea

ncbi_isolation_source: Waste Water Treatment Plant

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: UNIST


ncbi_country: USA: Walter Reed Army Medical Center

ncbi_isolation_source: Severe Trauma Site

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Miami University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-0733

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: Mycobacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_country: United Kingdom: Aberdeen

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Hominisplanchenecus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: National University of Singapore


ncbi_country: China: Wuhan

ncbi_isolation_source: seawater layers

ncbi_organism_name: Brevundimonas aurantiaca

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_country: Korea: Gwangju

ncbi_isolation_source: Osteomyelitis

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Chosun University


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Brazil:Santa Catarina; Itaji

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Hainan

ncbi_isolation_source: meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPHIGHO2_02_FULL_37_13


ncbi_isolate: Pseudomonas sp. Irchel 3E20

ncbi_organism_name: Pseudomonas sp. Irchel 3E20

ncbi_strain_identifiers: Pseudomonas sp. Irchel 3E20

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Morganella morganii

ncbi_submitter: National Chung Cheng University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0520

ncbi_submitter: Broad Institute


ncbi_country: Canada: Axel Heiberg Island; Nunavut

ncbi_isolation_source: microbial filaments from arctic saline spring

ncbi_organism_name: Thiomicrorhabdus sp.

ncbi_submitter: McGill University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: stool sample from 84 year old male with stage 3 colorectal cancer

ncbi_organism_name: Ruminococcus sp. UNK.MGS-30

ncbi_submitter: The Mayo Clinic


ncbi_country: Australia

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Bioplatforms Australia


ncbi_isolate: AOP43_B1_surf _bin _12

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: AOP43_B1_surf _bin _12

ncbi_submitter: Genoscope


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_submitter: Peking University Third Hospital


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Russia: Moscow

ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Robinsoniella sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: Industrial glue

ncbi_organism_name: Pseudochrobactrum saccharolyticum

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: United Kingdom: Aberystwyth

ncbi_isolation_source: marine waters

ncbi_organism_name: Cobetia sp. ICG0124

ncbi_submitter: International Centre for Genetic Engineering and Biotechnology


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Globicatella sp. HMSC072A10

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_country: South Korea

ncbi_isolation_source: raw chicken meat

ncbi_organism_name: Acinetobacter portensis

ncbi_submitter: Chung Ang University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: China: Jilin

ncbi_organism_name: Commensalibacter sp. M0355

ncbi_submitter: China Agricultural University


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_organism_name: Dysgonomonas sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_country: Netherlands

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Hyphomonas atlantica

ncbi_submitter: Xiamen University


ncbi_country: Antarctica

ncbi_isolation_source: lichen

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Korea Polar Research institute


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Mexico

ncbi_organism_name: Mesorhizobium sp. SEMIA 3007

ncbi_strain_identifiers: SEMIA 3007

ncbi_submitter: Univ Estadual Paulista UNESP/FCAV


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_submitter: University of Wyoming


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Brazil: Caruaru

ncbi_isolation_source: hospital inanimate surface

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: De Novo assembly

ncbi_isolation_source: oil-contaminated beach sediment

ncbi_organism_name: Marinobacter sp. EN3

ncbi_submitter: University of Illinois at Chicago


ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Marcell Experimental Forest

ncbi_isolation_source: soil

ncbi_organism_name: Syntrophaceae bacterium UBA7545

ncbi_submitter: University of Queensland


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Algoriphagus sp.


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_assembly_name: freshwater MAG --- Ja1-D2_bin-1961

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: Candidatus Avelusimicrobium fimicolum

ncbi_submitter: EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial alveolar lavage

ncbi_organism_name: Staphylococcus aureus M0820

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Italy: Florence

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: MO

ncbi_organism_name: Escherichia coli


ncbi_country: China: Heihe; Heilongjiang

ncbi_organism_name: Bradyrhizobium sp. AUGA SZCCT0124

ncbi_strain_identifiers: AUGA SZCCT0124

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: Lake Taihu

ncbi_isolation_source: cyanobacterial aggregates

ncbi_organism_name: Flavobacterium cyanobacteriorum

ncbi_submitter: Nanjing Institute of Geography and Limnology


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Ilumatobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: not provided

ncbi_organism_name: Actinomyces gerencseriae

ncbi_submitter: EMG


ncbi_country: China: Zhuhai

ncbi_isolation_source: broncho alveolar lavage fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jinan University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC068D05

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Berta


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland: Geneve

ncbi_organism_name: Enterococcus faecium EnGen0259

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_isolation_source: Skin swab

ncbi_submitter: SurvCARE


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aarhus University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Megasphaera sp.


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: India

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas sp. MSSRFD41

ncbi_submitter: M.S. Swaminathan Research Foundation


ncbi_country: Japan

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Nagoya University Graduate School of Medicine


ncbi_organism_name: Yersinia canariae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_strain_identifiers: mcr mut 2

ncbi_submitter: Paris Saclay


ncbi_country: USA

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: China

ncbi_isolation_source: Blood culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Leclercia pneumoniae

ncbi_submitter: Aarhus university


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Buttiauxella gaviniae

ncbi_submitter: Nanjing University of Science and Technology


ncbi_organism_name: Thauera sp. SDU_THAU2

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Michigan

ncbi_isolation_source: School cold water tap

ncbi_organism_name: Legionella taurinensis

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: uncultured Limibaculum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: ABKVJ


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human skin

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: NIH/NHGRI


ncbi_country: Kenya

ncbi_organism_name: Bacteroidales bacterium UBA5889

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5889


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: University of Alberta


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Acetobacter pomorum

ncbi_submitter: Brigham Young University


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_submitter: University of Oxford


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Poland: Siedlce

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes communis


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Brucella anthropi

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Candidatus Puniceispirillales bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__Candidatus Puniceispirillales bacterium


ncbi_isolate: AOP32_A1_surf _bin _20

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: AOP32_A1_surf _bin _20

ncbi_submitter: Genoscope


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Harvard University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Limosilactobacillus fermentum


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii BZICU-2

ncbi_submitter: Beijing Institute of Disease Control and Prevention


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_submitter: SC


ncbi_organism_name: Viridibacillus sp. FSL E2-0187

ncbi_submitter: Penn State


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: EMG


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio metoecus

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Korea: Jinju

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Genskey


ncbi_organism_name: Gordonia sp. NPDC003585

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. NPDC003585


ncbi_isolation_source: Environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G.Caporale"


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Streptomyces sp. NRRL F-5053

ncbi_strain_identifiers: NRRL F-5053

ncbi_submitter: University of Illinois


ncbi_country: India: Kashmir

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Paracoccus thiocyanatus

ncbi_strain_identifiers: SST

ncbi_submitter: Bose Institute


ncbi_organism_name: Candidatus Villigracilis affinis

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Candidatus Villigracilaceae;g__Candidatus Villigracilis;s__Candidatus Villigracilis affinis


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rifleibacteriota;x__unclassified Candidatus Rifleibacteriota;s__Candidatus Riflebacteria bacterium HGW-Riflebacteria-1


ncbi_country: Canada:Athabasca Oil Sands

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteroidales bacterium UBA2254

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2254


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Germany: Kassel

ncbi_isolation_source: cord moss Funaria hygrometrica

ncbi_organism_name: Methylobacterium bullatum

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Pseudoteredinibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: autopsy

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Salinibacteraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: South Korea: Chungcheongnam-do

ncbi_isolation_source: Reservoir

ncbi_organism_name: Sphingobium limneticum

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: USA

ncbi_organism_name: Ruminococcus sp. 1001136sp1

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Midgut Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Deferribacteres bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-0114

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Parafilimonas sp.

ncbi_submitter: BILS


ncbi_assembly_name: Rumen uncultured genome RUG12591

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Aeriscardovia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: Ruminococcus sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Arthrobacter bambusae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangzhou

ncbi_isolation_source: roots

ncbi_organism_name: Rhizobium glycinendophyticum

ncbi_submitter: guangdong institute of microbiology


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Broad Institute


ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: University of Alberta


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Minnesota Duluth


ncbi_country: China: Zhangjiang

ncbi_organism_name: Halobacteriovorax sp. DA5

ncbi_submitter: Guangdong Ocean University


ncbi_assembly_name: freshwater MAG --- MJ120716A_bin-0725

ncbi_organism_name: uncultured Holophagaceae bacterium


ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Atlantibacter subterraneus


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Finland: Olkiluoto

ncbi_isolation_source: Low level radioactive waste repository experiment

ncbi_organism_name: Paenibacillus sp. VTT E-133280

ncbi_submitter: VTT Technical Research Centre of Finland


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-936

ncbi_submitter: BILS


ncbi_country: Russia: Chelyabinsk (import from Tunisia)

ncbi_isolation_source: patient

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Research Institute for Plague Control


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Adlercreutzia sp.


ncbi_country: India: Prasanthi Gram; Puttaparthi

ncbi_isolation_source: pus sample of a 37 year old male patient with trauma

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sri Sathya Sai Institute of Higher Learning


ncbi_country: USA: Pittsburgh

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Clostridium butyricum


ncbi_organism_name: Clostridiaceae bacterium


ncbi_country: China: Lake Weiming

ncbi_isolation_source: sediment

ncbi_organism_name: Magnetococcales bacterium WMHbinv6

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCBD17_026

ncbi_submitter: University of California, Irvine


ncbi_organism_name: Morganella morganii

ncbi_submitter: Shandong University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: USA: Philadelphia

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: Yale Center for Genome Analysis


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA7096

ncbi_submitter: University of Queensland


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sobrinus TCI-342

ncbi_submitter: JCVI


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D9_bin-0608

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Wuhu; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: South china normal university


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: PARUL UNIVERSITY


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University College Cork


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Laboratorios veterinarios Lasser


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Aquirufa sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Chromatiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. NW601

ncbi_submitter: Sichuan University


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Pseudoalteromonas sp. US3C1004

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacillus cereus group sp. Bce006

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bce006


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: Massilia aerilata

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: stomach

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China:Sichuan Province

ncbi_isolation_source: forest

ncbi_organism_name: Pseudomonas sp. LY10J

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Palmer LTER

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Faecalicatena contorta

ncbi_submitter: SC


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: France: Besancon

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA

ncbi_isolation_source: cheese

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Howard University


ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Stanford University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Thailand: Trang

ncbi_isolation_source: sputum

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA3369

ncbi_submitter: University of Queensland


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Agaribacterium sp. ZY112

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Vibrio atlanticus

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Japan

ncbi_isolation_source: excrement

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Rakuno Gakuen University


ncbi_country: USA: NY

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus aureus DAR1310

ncbi_submitter: Broad Institute


ncbi_isolation_source: Ileo-caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia: Medellin

ncbi_isolation_source: teeth

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Universidad de Antioquia


ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: NCCP

ncbi_submitter: National Istitute of Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Universidad Austral de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis


ncbi_country: USA: VA

ncbi_isolation_source: ATCC Isolate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: FL

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_assembly_name: Rumen uncultured genome RUG724

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: China: Henan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Magnetovibrio sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: Changhai Hospital Affiliated to Naval Military Medical University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: EMG


ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium sp. HMSC034B08

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: USA: CT

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Universiteit Antwerpen


ncbi_country: Panama: Bocas del Toro

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: University of California, Davis


ncbi_submitter: Alexandria University


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_submitter: University of Bologna


ncbi_organism_name: Dyella sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Salmonella enterica CVM N47730 v1.0

ncbi_country: USA: WA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: uncultured Bordetella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: Luebeck

ncbi_isolation_source: easy flow

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_organism_name: Paenarthrobacter sp. CC6

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd.


ncbi_country: Spain: Galicia

ncbi_isolation_source: clam larvae

ncbi_organism_name: Vibrio neptunius

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Puerto Rico: Cabo Rojo

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SMMC6038

ncbi_submitter: Broad Institute


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Dekas Lab, Stanford University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: USA: New York City

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_country: China: Guizhou Province

ncbi_isolation_source: sludge of manganese mine

ncbi_organism_name: Manganibacter manganicus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: NY

ncbi_isolation_source: produce field drag swab

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: Viet Nam

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Instituto de Biotecnologia


ncbi_isolation_source: caecum

ncbi_organism_name: Gordonibacter urolithinfaciens

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Prevotella sp. UBA7115


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin45

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: HIE bin45

ncbi_submitter: Monash University


ncbi_organism_name: Pantoea allii

ncbi_submitter: University of Georgia


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Deinococcus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of South Florida


ncbi_organism_name: Streptomyces sp. NPDC059749

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Candidatus Gallimonas sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;x__environmental samples;s__uncultured Candidatus Gallimonas sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antwerp


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Terriglobus sp.


ncbi_organism_name: Vulcanimicrobiota bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter cloacae complex sp. IR5390

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5390


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_assembly_name: Rumen uncultured genome RUG10776

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces olindensis


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Kosmotogaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Actinomyces dentalis


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Lactobacillus jensenii


ncbi_organism_name: Thauera sp.

ncbi_submitter: Linnaeus University


ncbi_country: United Kingdom

ncbi_submitter: Kyushu University


ncbi_country: Italy: Pavia

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Pavia


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_organism_name: Enterococcus sp. DIV2469a

ncbi_submitter: Broad Institute


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_isolation_source: sediment

ncbi_organism_name: Thalassospira povalilytica

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Mesorhizobium sp. C386A

ncbi_submitter: Washington State University


ncbi_country: Poland: Ostroleka

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: South Korea: Coasted Sand Dune; Taean

ncbi_organism_name: Hymenobacter taeanensis

ncbi_submitter: Korea Atomic Energy Research Institute


ncbi_isolation_source: Human feces

ncbi_organism_name: Blautia sp. LMAG:75

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mesotoga sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Frankiales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Frankiales;x__Frankiales incertae sedis;x__environmental samples;s__uncultured Frankiales bacterium


ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium UBA2840

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2840


ncbi_organism_name: Kingella oralis


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Peru:Ascope; Chicama; La Libertad; AA.HH.

ncbi_organism_name: Yersinia pestis PY-34

ncbi_submitter: Institute for Genome Sciences


ncbi_country: India: Pangi;Himachal Pradesh

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Chryseobacterium sp. PCH239

ncbi_submitter: CSIR-IHBT PALAMPUR


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Corynebacterium pseudokroppenstedtii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: China: Zhengzhou

ncbi_isolation_source: Powdered Infant Formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Henan Center for Diease Control and Prevention


ncbi_organism_name: Acidiphilium sp.


ncbi_submitter: SC


ncbi_country: USA: Toombs Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Nigeria

ncbi_isolation_source: N/C

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_organism_name: Escherichia coli

ncbi_submitter: First Affiliated Hospital of Zhengzhou University


ncbi_country: USA: Iowa; Ames

ncbi_isolation_source: asparagus

ncbi_organism_name: Erwinia persicina

ncbi_submitter: Iowa State University