ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Australia: VIC

ncbi_genome_representation: full

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The University of Melbourne


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: Norway: West coast; Beach

ncbi_isolation_source: Plastic

ncbi_organism_name: Aeromonas sp. 2MA4

ncbi_submitter: Institute of Marine research


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_country: Switzerland:Lake Cadagno

ncbi_isolation_source: Lake Cadagno chemocline

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_assembly_level: Complete Genome

ncbi_country: China

ncbi_isolate: Jwb-nky

ncbi_organism_name: Candidatus Phytoplasma ziziphi

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: Jwb-nky

ncbi_submitter: Shandong Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrV (Elm yellows group);s__Candidatus Phytoplasma ziziphi


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Lentibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Oslo University Hospital, Rikshopitalet


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: China: Hangzhou; Zhejiang

ncbi_isolation_source: Abdominal infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-2 day 1375

ncbi_organism_name: Thermoanaerobacter sp.

ncbi_submitter: The Ohio State University


ncbi_isolation_source: not available

ncbi_organism_name: Gordonia paraffinivorans

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacillus sp. 95MFCvi2.1

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 95MFCvi2.1


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Brazil:Santa Catarina; Itajai

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: JiShou university


ncbi_country: Greece

ncbi_submitter: bioMerieux


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: bacterium UBP17_UBA6191

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP17_UBA6191


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: HUN-REN Veterinary Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ohio


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- UppL5_bin-1711

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5390

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5390


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Citrobacter sedlakii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agriculture University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12336

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_strain_identifiers: 175 ARN

ncbi_submitter: Taipei Medical University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 149 - depth 25m

ncbi_organism_name: Moraxellaceae bacterium REDSEA-S29_B6

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_submitter: McGill University


ncbi_country: Switzerland

ncbi_isolation_source: placenta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: USA: North Carolina; Durham

ncbi_organism_name: Bacillus cereus

ncbi_submitter: BGI


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: food

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Hebei Academy of Sciences


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 158


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia

ncbi_isolation_source: urine

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_isolation_source: Tara Oceans DNA samples corresponding to size fractions for protist

ncbi_organism_name: Micavibrio sp. UBA1850

ncbi_submitter: University of Queensland


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Northeast Normal University


ncbi_country: Germany: Cologne

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Cologne


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse (Mus musculus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Aeromonas sp. S2(2024)

ncbi_submitter: the Chinese University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of Chicago


ncbi_organism_name: Hanamia sp.


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Agro-industry, Prince of Songkla University, wageningen university


ncbi_organism_name: Bacteroidales bacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Groningen


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: Nebraska

ncbi_isolation_source: Pool of lung and small intestine

ncbi_submitter: University of Nebraska-Lincoln

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: bacterium sp. HQB-473

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__bacterium sp. HQB-473


ncbi_country: Brazil: Savana

ncbi_isolation_source: endophyte

ncbi_organism_name: Ochrobactrum sp. CNPMS2088

ncbi_submitter: Federal University of Minas Gerais


ncbi_country: China

ncbi_isolation_source: Tibetan Plateau glacier

ncbi_organism_name: Segetibacter sp. 3557_3

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon


ncbi_assembly_name: Bifcat

ncbi_submitter: University of Parma

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium catenulatum;x__Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043

ncbi_type_material_designation: assembly from type material


ncbi_country: Canada: Guelph

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Malaysia: Perak

ncbi_isolation_source: hot spring

ncbi_organism_name: Geobacillus sp. A8

ncbi_submitter: Universiti Teknologi MARA


ncbi_country: Russia: Moscow

ncbi_isolation_source: granulation tissue

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Universidad Austral de Chile


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Tidjanibacter sp.


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Henan Academy of Agricultural Sciences


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas alabamensis

ncbi_submitter: BGI


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Universiti Malaysia Kelantan


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: human gut

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methyloversatilis sp.

ncbi_submitter: University of Calgary


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Candidatus Kapaibacterium thiocyanatum

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__Candidatus Kapaibacterium thiocyanatum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__Candidatus Kapaibacterium thiocyanatum


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Segetibacter sp.

ncbi_submitter: EPFL


ncbi_country: Norway: Lake Steinsfjorden

ncbi_organism_name: Planktothrix mougeotii NIVA-CYA 405

ncbi_strain_identifiers: NIVA-CYA 405

ncbi_submitter: University of Oslo


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Pseudomonas aeruginosa DK2

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_country: Nepal: Himalayas; soil from near a hot spring

ncbi_isolation_source: alpine soil [ENVO:00005741]

ncbi_organism_name: Streptomyces sp. MBT51

ncbi_submitter: Institute of Biology, Leiden University


ncbi_country: USA: Washington

ncbi_isolation_source: Clinical

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: Erwinia sp. E_sp_B01_9

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: Canada: Aklavik; Northwest Territories

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Endomicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Portugal

ncbi_isolation_source: urine

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_country: United Kingdom

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Japan: Horonobe URL

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Synergistota;x__unclassified Synergistota;s__Synergistetes bacterium HGW-Synergistetes-1


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: fermentation

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: KAUST


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_organism_name: Oxalobacter sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Gluconobacter oxydans

ncbi_strain_identifiers: TBRC 4554

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_assembly_name: freshwater MAG --- Umea3p2_bin-0831

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Hungatella effluvii

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Vibrio sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: microbes were collected at JL-Dive100-S03

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: New Zealand

ncbi_isolation_source: cherry

ncbi_organism_name: Pseudomonas syringae

ncbi_strain_identifiers: ICMP 508

ncbi_submitter: New Zealand Institute for Plant & Food research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Prevotella melaninogenica


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-0050

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Roseburia faecis


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Streptomyces griseocarneus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Japan: Tokyo

ncbi_isolation_source: feces

ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Vedanta Biosciences, Inc.


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Dielma fastidiosa

ncbi_submitter: Aarhus Universityhospital


ncbi_country: Australia

ncbi_isolation_source: fleece

ncbi_submitter: CSIRO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: uncultured Alkaliflexus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter sp. KAM405

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: IBCH RAN


ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Pseudomonas sivasensis

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Stanford Healthcare


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_submitter: The Wellcome Trust Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus LGA251


ncbi_country: China

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Okayama University


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Institut Pasteur


ncbi_country: Spain: El Bierzo; Castilla y Leon

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Oviedo


ncbi_country: Germany: Dusseldorf

ncbi_isolation_source: surface water

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Antarctica: Wilhelmina Bay

ncbi_isolation_source: marine sediment

ncbi_organism_name: Vreelandella titanicae

ncbi_submitter: Shanghai Jiaotong UNI


ncbi_country: USA: New York City

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Rhizobium sp. 1399

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Zurich


ncbi_organism_name: Paenibacillus sp. FSL P4-0113

ncbi_submitter: Penn State


ncbi_assembly_name: Rumen uncultured genome RUG13711

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: Porcine feces

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Seoul National University


ncbi_isolation_source: Rain

ncbi_organism_name: Xanthomonas euroxanthea


ncbi_isolation_source: forest soil

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Austria

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_submitter: Hopital Bicetre


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium RIFCSPLOWO2_12_FULL_63_16


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AF25-19

ncbi_submitter: BGI


gtdb_type_species_of_genus: t

ncbi_organism_name: Gimesia maris

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_assembly_name: IMG-taxon 2675903005 annotated assembly

ncbi_organism_name: Tenuibacillus multivorans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Texas

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Cameroon: Ekona

ncbi_isolation_source: Red cocoyam rhizosphere

ncbi_organism_name: Pseudomonas muyukensis

ncbi_submitter: KU Leuven


ncbi_isolation_source: deep-sea sponge Neamphius huxleyi

ncbi_organism_name: Microbacterium sp. UBA6741

ncbi_submitter: University of Queensland


ncbi_isolation_source: liver tissue

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Tianjin Agricultural University


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Sphingomonas sp.


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: bone marrow

ncbi_submitter: University of Sao Paulo


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: freshwater

ncbi_organism_name: Flavobacterium sp. N1719

ncbi_submitter: Jeju National University


ncbi_country: Mali

ncbi_isolation_source: blood of a laboratory mouse

ncbi_organism_name: Borrelia crocidurae DOU

ncbi_strain_identifiers: DOU

ncbi_submitter: Rocky Mountain Labs, NIAID, NIH


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: sewage

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2527291702 annotated assembly

ncbi_organism_name: Rhodococcus rhodochrous J3


ncbi_country: United Kingdom:Manchester

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: McGill University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Atlanta

ncbi_isolation_source: urine

ncbi_organism_name: Aerococcus loyolae

ncbi_submitter: Region Zealand


ncbi_country: USA

ncbi_isolation_source: blood sample from patient with bacteremia

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CIG1114


ncbi_country: Oman: Somail Ophiolite

ncbi_isolation_source: Water sample from NSHQ14 Well

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: Smith 1013

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China: Beijing

ncbi_isolation_source: patient

ncbi_submitter: Peking University Third Hospital


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Zhejiang university


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Caulobacter sp. CCG-8

ncbi_submitter: Lycoming College


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacillus cereus group sp. BceL136

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL136


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 513

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aestuariivirgaceae bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: bacterium


ncbi_country: Brazil: Dourados

ncbi_submitter: LNCC


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Paenibacillus melissococcoides

ncbi_submitter: National Institute of Animal Health, National Agriculture and Food Research Organization


ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- LJ_bin-0710

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_assembly_name: Betaproteobacteria bacterium Ga0077540

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Betaproteobacteria bacterium Ga0077540

ncbi_submitter: University of Glasgow


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: MD

ncbi_isolation_source: clinical

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: DMB SH20230

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Dokdonella sp.

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Candidatus Spechtbacterales bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;o__Candidatus Spechtbacterales;x__unclassified Candidatus Spechtbacterales;s__Candidatus Spechtbacterales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Alachua

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Bacteroidetes bacterium UBA2664

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA2664


ncbi_country: Portugal

ncbi_isolation_source: Penile

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: National Institute of Health, Portugal


ncbi_assembly_name: IMG-taxon 2597490336 annotated assembly

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Naqu City; Tibet Autonomous Region

ncbi_isolation_source: dung

ncbi_organism_name: Nocardioides sp. dk884

ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Japan

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: freshwater MAG --- Ki2-D1_bin-0461

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Chongqing

ncbi_isolation_source: Physical

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Calothrix sp. NIES-2098

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: BGI


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: AAFC


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1543


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Cedecea davisae DSM 4568

ncbi_submitter: WUGSC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Priestia flexa NBRC 15715

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;s__Priestia flexa;x__Priestia flexa NBRC 15715


ncbi_submitter: Ural Scientific Research Institute of Maternity and Child Care


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Vadodara

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_submitter: EMG


ncbi_organism_name: Chryseobacterium oranimense

ncbi_submitter: Guangxi University


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10175

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Zhejiang

ncbi_isolation_source: kidney preservation fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital,College of Medicine,Zhejiang University


ncbi_country: Russia: Orenburg

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Cellular and Intracellular Symbiosis


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Candidatus Soleaferrea sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Soleaferrea;x__environmental samples;s__uncultured Candidatus Soleaferrea sp.


ncbi_country: China: Taizhou; Jiangsu Province

ncbi_organism_name: Siminovitchia fortis

ncbi_submitter: Technical University of Denmark


ncbi_country: Serbia: Temerin

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Nocardiopsis mangrovi

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Russia: Kazan

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Kazan Research Institute of Epidemiology and Microbiology


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: South Africa: Kwazulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 39

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: France

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: China-Japan Friendship Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_submitter: Washington University in Saint Louis


ncbi_country: India: Bidar town; Bidar taluk and district; Karnataka

ncbi_isolation_source: Milk

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Madurai Kamaraj University


ncbi_country: United Kingdom

ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Brazil: Ituiutaba

ncbi_isolation_source: lymph node

ncbi_organism_name: Pseudochrobactrum saccharolyticum

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Candidatus Purcelliella pentastirinorum

ncbi_submitter: University of Hawaii at Manoa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Purcelliella;s__Candidatus Purcelliella pentastirinorum


ncbi_isolation_source: cold seep

ncbi_organism_name: Methylomarinum sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Xanthomonas oryzae pv. oryzae PXO99A

ncbi_submitter: Center for Bioinformatics and Computational Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas oryzae;x__Xanthomonas oryzae pv. oryzae;x__Xanthomonas oryzae pv. oryzae PXO99A


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: North Carolina

ncbi_isolation_source: Leg wound

ncbi_organism_name: Vibrio metoecus

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_submitter: ECBC


ncbi_country: USA: IN

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Germany

ncbi_isolation_source: Wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: MO

ncbi_isolation_source: organ

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Johannesburg


ncbi_organism_name: Streptomyces sp. NPDC058891

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Indonesia

ncbi_isolation_source: Soft coral (Sinularia sp.) tissues

ncbi_organism_name: Virgibacillus salarius

ncbi_submitter: Institut Teknologi Bandung


ncbi_country: China

ncbi_isolation_source: hot spring

ncbi_organism_name: Fervidobacterium changbaicum

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: South Korea: Jeju island sea

ncbi_isolation_source: fish gut

ncbi_organism_name: Granulicatella seriolae

ncbi_submitter: Jeju national university


ncbi_country: USA: Wisconsin

ncbi_isolation_source: nasal lavage

ncbi_organism_name: Micrococcus sp. HSID17245

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: soil

ncbi_organism_name: Corynebacterium glutamicum

ncbi_strain_identifiers: YI

ncbi_submitter: Tianjin university of science and technology


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Streptomyces rochei


ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE)


ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Nocardioides sp. N13(2025)

ncbi_submitter: Anhui Agricultural University


ncbi_submitter: Lebanese American university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Stenotrophomonas;x__Stenotrophomonas maltophilia group;x__unclassified Stenotrophomonas maltophilia group;s__Stenotrophomonas maltophilia group sp. CASM55


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_assembly_name: freshwater MAG --- Loc090116-8m_bin-0563

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured delta proteobacterium


ncbi_isolation_source: sub-seafloor sulfide deposits

ncbi_organism_name: bacterium BMS3Abin11

ncbi_submitter: JAMSTEC


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: INTA


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient sediment

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Mississippi State University


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: marine ANAMMOX bioreactor

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: KAUST


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Small intestine

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not provided

ncbi_organism_name: Fusobacterium nucleatum


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: DOE JGI


ncbi_country: Malaysia

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France: Corsica; Monte Renoso

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Polynucleobacter paneuropaeus

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: Tang lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: gut

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: State Key Laboratory of agricultural microbiology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Indian Ocean: Southwest Indian Ridges

ncbi_isolation_source: deep-sea sediments

ncbi_organism_name: Brevibacterium sediminis

ncbi_submitter: Third Institute Of Oceanography,MNR


ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_submitter: CIGoM


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 18 (4-8589585)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 18 (4-8589585)


ncbi_organism_name: Segatella copri

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Cheilosia soror


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_country: USA: Bronx; NY

ncbi_isolation_source: Ear swab

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: France: Paris

ncbi_isolation_source: urine

ncbi_strain_identifiers: MecS

ncbi_submitter: Cochin hospital


ncbi_country: USA: South Dakota

ncbi_isolation_source: feces

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: New Zealand

ncbi_isolation_source: Plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of California


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Prevotellaceae bacterium UBA4374

ncbi_submitter: University of Queensland


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: EMG


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Northfield

ncbi_isolation_source: Zebrafish tank water

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: University of Minnesota, Twin Cities


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Angelakisella sp.


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprococcus sp.


ncbi_isolation_source: Factory - Opening

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_country: Canada

ncbi_isolation_source: bison

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: cood seep sediment

ncbi_organism_name: Qipengyuania flava

ncbi_submitter: chinese academy of sciences


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0111

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: White Oak Rive Estuary; North Carolina

ncbi_isolation_source: Sulfate-rich zone estuary sediments 8-12 cm

ncbi_organism_name: Deltaproteobacteria bacterium SG8_13

ncbi_submitter: University of Texas

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium SG8_13


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: NanJing University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: surface water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_country: Mexico: Queretaro

ncbi_isolation_source: macerate of infective juveniles of the entomopathogenic nematode Steinernema carpocapsae reproduced in last instar larvae of Galleria mellonella

ncbi_organism_name: Xenorhabdus nematophila

ncbi_submitter: Universidad Autonoma del Estado de Morelos


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: France: Corsica

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter acidiphobus

ncbi_submitter: University of Innsbruck


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium GW2011_GWF2_36_839


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Auribacterota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Auribacterota;x__unclassified Candidatus Auribacterota;s__Candidatus Auribacterota bacterium


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Cytophaga sp.

ncbi_submitter: EPFL


ncbi_organism_name: Hydrogenophaga sp. MI9

ncbi_submitter: Dongguk University


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Streptococcus canis

ncbi_submitter: University of Glasgow


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Salmonella sp. s29923

ncbi_submitter: Zhejiang university


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: KU Leuven


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Cryosericum sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;x__unclassified Candidatus Cryosericum;s__Candidatus Cryosericum sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: concordia university


ncbi_country: Nigeria: Nsukka

ncbi_isolation_source: sold in market

ncbi_organism_name: Citrobacter portucalensis

ncbi_strain_identifiers: Nsk 3

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Myxococcales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Tengchong

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Stanford University


ncbi_country: Hong Kong

ncbi_isolation_source: hospital

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Tongue scraping

ncbi_organism_name: Streptococcus sp. 15.1

ncbi_submitter: University of Queensland


ncbi_organism_name: Wenjunlia tyrosinilytica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: South Korea: Gimcheon

ncbi_isolation_source: tissue

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_country: USA

ncbi_isolation_source: CF Sputum

ncbi_organism_name: Bordetella genomosp. 7

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacillus sp. FSL P2-0092

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL P2-0092


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Pseudoalteromonas carrageenovora

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Candidatus Avimonas merdigallinarum

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Avimonas;s__Candidatus Avimonas merdigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avimonas;s__Candidatus Avimonas merdigallinarum


ncbi_country: Italy

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Streptococcus gallinaceus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_isolation_source: Arterial catheter

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_organism_name: Kluyvera ascorbata

ncbi_submitter: Institute of Environmental Science and Research


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_country: Russia: Stavropol region

ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kineosporia succinea


ncbi_country: China: Jiangsu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_submitter: SRCAMB


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: Clemson University


ncbi_isolation_source: Tooth

ncbi_organism_name: Streptococcus anginosus


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_assembly_name: Rumen uncultured genome hRUG870

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Thermosulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: gut of vertebrate mammal

ncbi_organism_name: Prevotella sp. UBA640

ncbi_submitter: University of Queensland


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: France: Limoges

ncbi_submitter: Universite Paris Sud


ncbi_organism_name: Burkholderiales bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Brazil

ncbi_isolation_source: slaughterhouse

ncbi_submitter: University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Azerbaijan

ncbi_organism_name: Vibrio cholerae


ncbi_organism_name: Chitinispirillaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus haynesii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Amycolatopsis sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola plebeius


ncbi_organism_name: uncultured Bergeyella sp.


ncbi_organism_name: Salinisphaera orenii

ncbi_submitter: Queen's University Belfast


ncbi_isolation_source: petroleum contaminated soil

ncbi_organism_name: Janibacter sp. DB-40

ncbi_submitter: Nankai University


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_country: India: Imphal west district

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Momota Potshangbam's shared submissions


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: [Eubacterium] saphenum

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF EXETER


ncbi_country: Kazakhstan

ncbi_isolation_source: nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Hyphomonadaceae bacterium


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Parvimonas micra

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UCSI University


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: EMG


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Dactylosporangium cerinum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolate: AOP10_L1_surf _bin _7

ncbi_organism_name: Pseudomonas helleri

ncbi_strain_identifiers: AOP10_L1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Carnobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Sphingobium sp.


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: bacterium


ncbi_organism_name: uncultured Magnetovibrio sp.


ncbi_organism_name: Capnocytophaga leadbetteri


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01351

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01351


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: Ukraine

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Clostridiales bacterium UBA4696

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Vreelandella indica

ncbi_submitter: Third Institute Of Oceanography


ncbi_organism_name: Paenibacillus sp. FSL H7-0735

ncbi_submitter: Penn State


ncbi_country: India

ncbi_submitter: Christian Medical College


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Cyanobacteria bacterium CSSed11_75

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium CSSed11_75


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cinvestav


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Bacteroides nordii

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: faeces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Quadram Bioscience Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: China: Nanchang

ncbi_isolation_source: rectal swab from healthy participants

ncbi_submitter: beijing


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human skin

ncbi_organism_name: Brevibacterium ihuae

ncbi_submitter: NIH/NHGRI


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: France: Rennes

ncbi_isolation_source: blood

ncbi_submitter: University of Rennes 1


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: CSIR-NEERI


ncbi_country: United Kingdom: Dorset

ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: NIAB East Malling Research


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_organism_name: Mycobacterium sp. HUMS_1102779

ncbi_submitter: Research Group on Difficult to Diagnose and Treat Infections. Institute for Health Research Aragon


ncbi_isolation_source: Romaine Lettuce

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: IMG-taxon 2654588106 annotated assembly

ncbi_organism_name: Ornithinibacillus halophilus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: horse manure [ENVO:00003859]

ncbi_organism_name: Neomoorella thermoacetica

ncbi_submitter: AIST


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Blautia sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Arsenophonus sp.

ncbi_submitter: University of South Bohemia in Ceske Budejovice, Faculty of Science


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Dokdonia sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_country: Canada: Alberta

ncbi_isolation_source: tissue sample

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_organism_name: Sulfitobacter sp. 1A09261

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Marivirga tractuosa

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Northern Minnesota

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: University of Minnesota


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human gut


ncbi_country: USA: FL

ncbi_isolation_source: fecal sample from beef calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Denmark

ncbi_isolation_source: cleaning system aquaculture

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW306-2-2C-D06C

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: France

ncbi_isolation_source: cheese rind

ncbi_organism_name: Halomonas casei

ncbi_submitter: INRA


ncbi_isolation_source: lichen metagenome

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Achromobacter sp. Root565

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptococcus pneumoniae TIGR4

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_organism_name: uncultured Faecalimonas sp.


ncbi_submitter: Spribille Lab


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: EMG


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Acidovorax facilis

ncbi_strain_identifiers: CCUG 2113

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Neisseria sp.


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Synechococcus sp. MIT S9220

ncbi_strain_identifiers: MIT S9220

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Lacombe

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Oliverpabstia intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Chugiak; AK

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: Sea Water

ncbi_organism_name: Micrococcus sp. Alg238-R198

ncbi_submitter: Elham Karimi


ncbi_assembly_name: Salmonella enterica CVM N45929 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella sp. 123993

ncbi_submitter: the First Affiliated Hospital of Medical School