ncbi_country: Oman

ncbi_isolation_source: ASCITIC FL

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Mesoflavibacter profundi

ncbi_submitter: Tang lab


gtdb_representative: f

ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaerococcus sp.

ncbi_submitter: EBI


ncbi_assembly_level: Chromosome

ncbi_country: USA

ncbi_isolation_source: Bronchial Alveolar lavage

ncbi_organism_name: Mycobacterium kubicae

ncbi_submitter: National Jewish Health


ncbi_assembly_level: Scaffold

ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Modestobacter sp.

ncbi_submitter: CAU


ncbi_organism_name: Variovorax soli NBRC 106424

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: OK

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Stellenbosch University


ncbi_isolation_source: Clinical

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: USFDA


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Israel

ncbi_isolation_source: rectal swab

ncbi_organism_name: Citrobacter sedlakii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_assembly_name: freshwater MAG --- Day2-4_bin-270

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Russia

ncbi_isolation_source: nasopharynx from a pediatric patient

ncbi_organism_name: Streptococcus pseudopneumoniae 1321

ncbi_submitter: Research Institute of Physical-Chemical Medicine, Moscow, Russia


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Singapore

ncbi_isolation_source: wet market

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: China: Shenzhen

ncbi_organism_name: Tannerella sp. AF04-6

ncbi_submitter: BGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: WAGENINGEN UNIVERSITY


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_country: South Africa: Tygerberg Nature Reserve; Cape Town

ncbi_isolation_source: hindgut

ncbi_organism_name: Streptomyces sp. NRRL B-24720

ncbi_submitter: University of Illinois


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: JZ

ncbi_submitter: Henan University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Wyoming


ncbi_organism_name: uncultured Geobacter sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Macrococcus animalis

ncbi_submitter: University of Bern


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Methylobacterium oryzisoli

ncbi_submitter: Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: USA: Mesquite Bay; Texas

ncbi_isolation_source: shallow marine sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_country: Italy

ncbi_isolation_source: salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_genome_category: derived from single cell

ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: Korea Polar Research Institute, Republic of Korea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Guangzhou

ncbi_isolation_source: spoiled beer

ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: China National Research Institute of Food and Fermentation Industries


ncbi_country: USA: Minnesota

ncbi_organism_name: Pseudomonas coronafaciens pv. zizaniae

ncbi_strain_identifiers: ICMP 8944

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. zizaniae


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: salt lake

ncbi_organism_name: Chelativorans sp. YIM 93263

ncbi_submitter: Lingnan Normal University


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG11359

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea

ncbi_isolation_source: Needle and Root

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Yeungnam University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: South Africa: Zola

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 0-3 cm

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: USA: CA

ncbi_isolation_source: goat alpine ibex feces

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_strain_identifiers: N


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Juntendo University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: USA: North Carolina

ncbi_isolation_source: spinal lesions

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: NC State University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


gtdb_type_species_of_genus: t

ncbi_isolation_source: China: Weihai

ncbi_organism_name: Cerasicoccus arenae

ncbi_refseq_category: reference genome

ncbi_submitter: Shandong university


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Japan

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho university


ncbi_country: USA: SC

ncbi_isolation_source: feces (Oryctolagus cuniculus)


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces violaceusniger Tu 4113

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces violaceusniger group;s__Streptomyces violaceusniger;x__Streptomyces violaceusniger Tu 4113


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: Stone

ncbi_organism_name: Paenarthrobacter sp. PH39-S1

ncbi_submitter: Yildiz Technical University


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (5uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Sweden: Kalmar

ncbi_isolation_source: water

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Israel: Negev desert

ncbi_isolation_source: desert sand [ENVO_00005800]

ncbi_organism_name: Bartonella krasnovii

ncbi_submitter: Hebrew university


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Asticcacaulis sp.

ncbi_submitter: University of Montreal


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Microcystis wesenbergii FACHB-1317

ncbi_submitter: South China Normal University


ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: EBI


ncbi_isolation_source: lake water

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Korea: Suwon

ncbi_isolation_source: shallow eutrophic lake

ncbi_organism_name: Paraconexibacter algicola

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Elusimicrobiales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Holdemania massiliensis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: Tepidisphaera sp. AFA_KM1/D3

ncbi_organism_name: Tepidisphaera sp.

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Methylophaga sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Spain

ncbi_isolation_source: drinking water

ncbi_organism_name: Pedobacter aquatilis

ncbi_strain_identifiers: CECT 7114

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: St. Joseph; Minnesota

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China: Tianjin

ncbi_isolation_source: river water

ncbi_organism_name: Legionella sp. km535

ncbi_submitter: kingMed Center for Clinical Laborary


ncbi_organism_name: Agromyces sp.

ncbi_submitter: Zhejiang University


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Nairobi


ncbi_country: France

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_organism_name: Parabacteroides merdae CL09T00C40

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Vibrio bivalvicida

ncbi_submitter: University of Vienna


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacteroidales bacterium H4

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium H4


ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolate: Streptomyces globisporus 4-3

ncbi_organism_name: Streptomyces globisporus

ncbi_strain_identifiers: Streptomyces globisporus 4-3

ncbi_submitter: Sanford Burnham Prebys Medical Discovery Institute


ncbi_submitter: Wayne State University


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1048

ncbi_submitter: Broad Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Sulfurimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhizobium sp. R86522

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: National Research Council Canada


ncbi_organism_name: uncultured Christensenellales bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Bacillus cereus group sp. BceL307

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL307


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Gordonia sp. DT30

ncbi_submitter: University of Liege

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. DT30


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Canada

ncbi_isolation_source: vaginal microbiome

ncbi_organism_name: Bifidobacteriaceae bacterium WP012

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Staphylococcus caprae

ncbi_strain_identifiers: Ngtc RS 2

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_country: USA: New Mexico; Sevilleta Desert

ncbi_isolation_source: desert soil

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: USA: District of Columbia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_assembly_name: IMG-taxon 2675903221 annotated assembly

ncbi_organism_name: Halolactibacillus miurensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Singapore: Singapore General Hospital

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Cincinatti

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Denmark: Region Zealand

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Slagelse Hospital


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Mycolicibacterium neoaurum

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-02309

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: BILS


ncbi_country: Germany: Hamburg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_country: Canada: Hecate Strait

ncbi_isolation_source: dilbit-coated clay beads in seawater

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: National Research Council Canada


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Florida; Big Torch Key

ncbi_organism_name: Asanoa sp. WMMD1127

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Parafrigoribacterium humi

ncbi_strain_identifiers: SYSU BS000231

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 1 d SRT; 55C; pH 5.0

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: New York City

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Porticoccus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: shallow marine sediment

ncbi_organism_name: uncultured Carboxylicivirga sp.

ncbi_submitter: marine college, shandong university


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Northeastern University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Haines; Kangaroo Island

ncbi_isolation_source: Meat Ant

ncbi_organism_name: Fructilactobacillus carniphilus

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Stappiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD19051

ncbi_submitter: Broad Institute


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Guangzhou mango

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: South China Agricultural University


ncbi_country: Italy

ncbi_isolation_source: oropharyngeal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Antarctica: Western Antarctica; Livingston Island

ncbi_isolate: LIV bin39

ncbi_isolation_source: soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_strain_identifiers: LIV bin39

ncbi_submitter: Monash University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Pantoea piersonii


ncbi_organism_name: Halothiobacillaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA6925

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA6925


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. F7350

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. F7350


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Microbacteriaceae bacterium UBA6523


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pantoea sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Ethiopia: Oromiya; West shewa; Holeta

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Alistipes ihumii


ncbi_country: Germany

ncbi_isolation_source: lung

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Vulcanimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_organism_name: Prevotella histicola


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Tidjanibacter sp.


ncbi_country: USA: PA

ncbi_isolation_source: intestine

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_assembly_name: IMG-taxon 2639763200 annotated assembly

ncbi_organism_name: Leifsonia sp. 509MF

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel


ncbi_isolate: AOP7_E1_surf _bin _10

ncbi_organism_name: Vibrio casei

ncbi_strain_identifiers: AOP7_E1_surf _bin _10

ncbi_submitter: Genoscope


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Dhaka


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Thiobacillus sp.


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Streptomyces sp. NPDC058794


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Princess of Naradhiwas University


ncbi_organism_name: Bifidobacterium pullorum


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Shewanella colwelliana

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Curtobacterium sp. NPDC086286


ncbi_organism_name: Bradyrhizobium sp. USDA 336

ncbi_strain_identifiers: USDA 336

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Gemelliphila palaticanis

ncbi_submitter: King's College London


ncbi_organism_name: Symbiobacterium terraclitae

ncbi_submitter: University of Calgary


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Eel River; South Fork Eel River near Phillipsville

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Legionella fairfieldensis

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EBI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: Pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Qingdao

ncbi_organism_name: Enterobacter sp. CGMCC 5087

ncbi_strain_identifiers: CGMCC 5087

ncbi_submitter: Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: skin

ncbi_organism_name: Blastococcus sp. Marseille-P5729

ncbi_submitter: URMITE


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: uncultured Blautia sp.


ncbi_organism_name: Candidatus Aerophobota bacterium

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aerophobota;s__Candidatus Aerophobota bacterium


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Acidimicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: CA

ncbi_isolation_source: Raw Cow Milk

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_assembly_name: Rumen uncultured genome RUG10082

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bordetella pertussis 2250905

ncbi_submitter: JCVI


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Alteromonas oceani

ncbi_submitter: Tang lab


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-424-P18

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Endobacterium cereale

ncbi_submitter: INRAE


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Canoe Beach; Nahant; MA

ncbi_isolation_source: Coastal ocean surface water

ncbi_organism_name: Psychromonas sp. psych-6C06


ncbi_organism_name: Acetobacter pasteurianus

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: USA

ncbi_organism_name: Xanthomonas hortorum pv. hederae

ncbi_strain_identifiers: WHRI 7744

ncbi_submitter: University of Exeter

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: United Kingdom: LSHTM

ncbi_isolation_source: Laboratory reference strain

ncbi_submitter: University of Bath


ncbi_country: Argentina

ncbi_isolation_source: whey powder

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8420

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Distal colon


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20084384


ncbi_organism_name: uncultured Alistipes sp.


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_country: China: Hubei

ncbi_isolation_source: Rice wine Koji

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Broad Institute


ncbi_organism_name: Helicobacter ganmani


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Streptomyces demainii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Brevibacillus formosus

ncbi_strain_identifiers: URMC 9

ncbi_submitter: University of Rochester


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonas sp. QD5

ncbi_submitter: University of British Columbia


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: China: Hotan

ncbi_isolation_source: soil

ncbi_organism_name: Paractinoplanes hotanensis

ncbi_submitter: College of Life Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068


ncbi_country: France: Villejuif

ncbi_organism_name: Enterococcus gallinarum


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: milk products

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Brigham Young University


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: cloth

ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: University of Queensland


ncbi_country: Mongolia: Dorno-Gobi province

ncbi_isolation_source: desert soil

ncbi_organism_name: Streptomyces sp. DG2A-72

ncbi_submitter: Chungnam National University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Padova


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Streptomyces sp. MAR4 CNX-425

ncbi_strain_identifiers: MAR4 CNX-425

ncbi_submitter: Southern Methodist University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Higher Institute of Applied Biological Sciences of Tunis (ISSBAT), University of Tunis El Manar


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Rhizobium brockwellii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: uncultured Pyrinomonadaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Acetobacteraceae bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Manitoba


ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pedobacter suwonensis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Scientific Centre for Family Health and Human Reproduction Problems


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Germany: Wietze

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_submitter: NIH/NCI


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-6792

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1068S

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Oviduct

ncbi_organism_name: Mycoplasmopsis glycophila


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: blood culture

ncbi_submitter: NORHED grant


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Acholeplasmatales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Antarctica

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. E3

ncbi_submitter: Beijing Institute of Technology


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: chlorinated drinking water; site 4

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: University of Glasgow


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal


ncbi_country: Russia: St.Petersburg

ncbi_isolation_source: wound

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Institute of Experimental Medicine


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: EMG


ncbi_country: China: Jinhua

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Rummeliibacillus stabekisii


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1337

ncbi_submitter: Broad Institute


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Flavobacterium gawalongense

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Jeonbuk National University


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 319

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: SNUC 5468

ncbi_submitter: University of Calgary


ncbi_isolation_source: breast implant wound fluid of a 71-year old female patient with clinical symptoms consistent with brucellosis

ncbi_organism_name: Brucella inopinata BO1

ncbi_submitter: Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Hong Kong

ncbi_isolation_source: Stanley WWTPs_4 WWTPs influent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Maryland


ncbi_organism_name: Comamonas sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Rouyn-Noranda

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Melghirimyces thermohalophilus


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_country: USA: Texas; Bandera

ncbi_isolation_source: guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: Faeces

ncbi_organism_name: Brachyspiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_country: Russia: Archangelsk

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Institute of Experimental Medicine


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale


ncbi_country: Antarctica: Mackay Glacier regions; Mackay Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Mobiluncus sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Emory University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: soil and untensils from a dairy farm

ncbi_organism_name: Mycobacterium avium subsp. avium Env 77

ncbi_strain_identifiers: Env 77

ncbi_submitter: University of Wisconsin- Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. avium;x__Mycobacterium avium subsp. avium Env 77


ncbi_country: Canada: Buffalo Point; MB

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_isolation_source: stool sample from patient with cholera

ncbi_organism_name: Vibrio cholerae O1 str. 2010V-1014

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. 2010V-1014


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Ignavibacteria bacterium GWA2_55_11

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium GWA2_55_11


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Slovenia

ncbi_isolation_source: water

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Brevibacterium moorei

ncbi_submitter: Wageningen University and Research


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_submitter: Cornell University


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Hafnia paralvei

ncbi_submitter: University of Parma


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Queensland

ncbi_isolation_source: lymph node

ncbi_organism_name: Brucella sp. 2280

ncbi_submitter: Queensland Health Forensic and Scientific Services


ncbi_country: Japan:Mid-Okinawa Trough; Noho site

ncbi_isolation_source: mineral material

ncbi_organism_name: Lebetimonas natsushimae

ncbi_submitter: Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology


ncbi_country: China: Guangdong Province

ncbi_isolation_source: soil

ncbi_organism_name: Lysinibacillus varians

ncbi_submitter: NCAUR-ARS-USDA


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean: Southern Mariana Trough

ncbi_isolation_source: marine hydrothermal vent chimney sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Vienna


ncbi_organism_name: Paraburkholderia silviterrae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Phocaeicola plebeius


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Kasetsart University


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Barnesiella sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: Streptomyces netropsis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Thermodesulfatator sp.


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: University of Southern California


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Coprococcus eutactus


ncbi_organism_name: Undibacterium sp. WLHG33

ncbi_submitter: Shenzhen Center for Disease Control and Prevention


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: shower

ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Technische Universiteit Delft


ncbi_country: Poland

ncbi_isolation_source: sauerkrout

ncbi_organism_name: Latilactobacillus curvatus

ncbi_strain_identifiers: CIRM-BIA 1458

ncbi_submitter: Brigham Young University


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Canada: High River

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_country: USA: FL

ncbi_submitter: University of Florida


ncbi_isolation_source: human gut

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Guangzhou

ncbi_isolation_source: ICU staff rectal swab

ncbi_submitter: University of Birmingham


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Actinobacillus;s__Actinobacillus pleuropneumoniae;x__Actinobacillus pleuropneumoniae serovar 11;x__Actinobacillus pleuropneumoniae serovar 11 str. 56153


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Prevotella bivia


ncbi_country: USA: MD

ncbi_organism_name: Aeromonas sp. FDAARGOS 1410

ncbi_strain_identifiers: FDAARGOS 1410

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: tundra soil

ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: University of Helsinki


ncbi_country: United Kingdom

ncbi_isolation_source: Lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Negativicutes bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;x__environmental samples;s__uncultured Negativicutes bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of medecine and pharmacy RABAT


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Wuhan

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: EMG


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_assembly_name: freshwater MAG --- UppL4_bin-187

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: complete digestive tract of R. prolixus; lab reared at Instituto Ren Rachou

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Goethe University Frankfurt am Main/Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-176

ncbi_submitter: JCVI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UCSF


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: Taiwan

ncbi_isolation_source: GI

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Escherichia coli

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_country: China: Jiaxing; Zhejiang

ncbi_isolation_source: chicken breast

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: [Eubacterium] siraeum


ncbi_country: China: Anhui; Tongling

ncbi_organism_name: Sulfobacillus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12117

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Oklahoma

ncbi_isolation_source: Blood

ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Aquimarina mytili

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Bacteroides eggerthii


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: EMG


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: University of Southern California


ncbi_country: France: not applicable

ncbi_isolation_source: sea

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Croatian Veterinary Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ110927B_bin-465

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: TN

ncbi_isolate: Cell 2

ncbi_isolation_source: subgingival plaque

ncbi_strain_identifiers: Cell 2

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;s__Tannerella serpentiformis;x__Tannerella sp. oral taxon BU063 isolate Cell 2


ncbi_organism_name: Chryseobacterium arthrosphaerae

ncbi_strain_identifiers: NNCa 2741

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus amylovorus


ncbi_organism_name: Neisseria meningitidis


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacteroidales bacterium UBA3911

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3911


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Italian National Institute of Health


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Broad Institute


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-5-8

ncbi_submitter: Curtin University


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: France: Guebwiller; Alsace

ncbi_organism_name: Borreliella burgdorferi IPT61

ncbi_submitter: Animal Epidemiology Unit - INRA - Saint Genès Champanelle; CNR Borrelia - Pasteur Institute - Paris


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Puniceibacterium confluentis

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with hylon

ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of South Australia


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Escherichia coli

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Tissierella sp.


ncbi_organism_name: Tenacibaculum litoreum

ncbi_submitter: INRA


ncbi_organism_name: Leptothoe sp. EHU-05/26/07-4

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: McMaster University


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; Northern Atlantic

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_submitter: Kansas State University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Microcystis panniformis

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia

ncbi_isolation_source: intestine contents

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kuban State Agrarian University


ncbi_country: China: Guangdong

ncbi_isolation_source: swine nasal swab

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: South China Agricultural University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Queensland


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp.

ncbi_submitter: AAFC


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Acidovorax radicis

ncbi_submitter: EMG


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Salmonella sp. M285

ncbi_submitter: Zhejiang University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: University of Chicago


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Sporichthyaceae bacterium


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: JCVI


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: China CDC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Christchurch

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_assembly_name: Rumen uncultured genome RUG14631

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_strain_identifiers: BEITU-LA

ncbi_submitter: University of Toronto


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 99

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of Chicago


ncbi_country: USA: Maine

ncbi_isolation_source: skin swab of homozygous nude mice

ncbi_organism_name: Corynebacterium bovis

ncbi_submitter: The Jackson Laboratory


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Dialister micraerophilus

ncbi_submitter: Loyola University Chicago


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Wroclaw University of Environmental and Life Sciences


ncbi_country: Netherlands

ncbi_isolation_source: Soup

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NIZO Food Research BV


ncbi_assembly_name: Rumen uncultured genome RUG10770

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Okeania sp.

ncbi_submitter: CSIR-Centre for Cellular and Molecular Biology


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universiteit Antwerpen


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock bioreactor

ncbi_organism_name: Burkholderiales bacterium 66-5

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Fretibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Spain

ncbi_submitter: Hospital 12 de Octubre


ncbi_country: Malaysia

ncbi_isolation_source: sputum sample from a patient with lung infection

ncbi_organism_name: Mycobacteroides abscessus M154

ncbi_submitter: Universiti Malaya, Kuala Lumpur


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: jejunum

ncbi_organism_name: Limosilactobacillus agrestis

ncbi_submitter: University of Alberta


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: milk (mastitis)

ncbi_organism_name: Mycoplasmopsis agalactiae

ncbi_submitter: INRA


ncbi_assembly_name: freshwater MAG --- Loclat_bin-08429

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_country: China: Shanghai

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Megasphaera micronuciformis


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany: Jena

ncbi_isolation_source: throat swab neonate

ncbi_submitter: Jena University Hospital


ncbi_country: USA: California

ncbi_isolation_source: human

ncbi_organism_name: Yersinia pestis

ncbi_strain_identifiers: Shasta

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Shaanxi

ncbi_isolation_source: bovine milk

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium OttesenSCG-928-I14


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Raoultella terrigena

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: China: Shaoguan

ncbi_isolation_source: unified soil; enrichment culture of cellulolytic microbial consortium named F1RT

ncbi_organism_name: Brevibacillus borstelensis

ncbi_submitter: Guilin Medical University


ncbi_organism_name: Christiangramia sediminicola

ncbi_submitter: Shandong University


ncbi_country: Sweden: Stordalen mire

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Cryosericum septentrionale

ncbi_submitter: The Ohio State University

ncbi_taxonomy: d__Bacteria;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;s__Candidatus Cryosericum septentrionale

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;s__Candidatus Cryosericum septentrionale


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: CA; San Francisco

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium haemophilum

ncbi_submitter: UCSF


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Finegoldia sp. BIOML-A5

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Microcystis panniformis

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: CCARM 3A686

ncbi_submitter: Nottingham Trent University


ncbi_country: China: Shandong

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 2

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: University of Wyoming


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Nocardia sp. NPDC051321

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Bern


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Bilophila faecipullorum


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Treponema berlinense

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Sichuan University