ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_assembly_level: Scaffold

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


gtdb_representative: t

ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinhua Hospital, Shanghai Jiao Tong University School of Medicine


gtdb_type_species_of_genus: t

ncbi_assembly_level: Chromosome

ncbi_isolation_source: oral cavity

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Parascardovia;s__Parascardovia denticolens;x__Parascardovia denticolens DSM 10105 = JCM 12538

ncbi_type_material_designation: assembly from type material


ncbi_country: Hungary

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Turkey

ncbi_isolation_source: throat swab

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: not known


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Poland: Opole

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Akkermansia muciniphila


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: JiLin Agricultural Science and Technology


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_isolation_source: human skin

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1617 from squamous cell carcinomas patient MST026

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: University of Southampton


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus felis

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Faecalimicrobium dakarense

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces pseudovenezuelae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: hosepipe

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Manchester


ncbi_country: Hong Kong

ncbi_isolation_source: sediment

ncbi_organism_name: Escherichia sp. E3659

ncbi_submitter: HongKong University of Science and Technology


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: RIKEN, BDR


ncbi_country: USA: MN

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: forest soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Ireland: Dublin

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Maynooth University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_submitter: University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EBI


ncbi_country: Jordan

ncbi_isolation_source: spice

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Massilia sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: swine farm

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Spain

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: Caecum

ncbi_organism_name: Leuconostoc pseudomesenteroides


ncbi_organism_name: uncultured Tessaracoccus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Vibrio cholerae C6706

ncbi_submitter: CDC


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: SEMIA 415

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: Victoria

ncbi_organism_name: Enterococcus thailandicus

ncbi_submitter: Federation University Australia


ncbi_isolation_source: marine

ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: University of Queensland


ncbi_country: China: Shenyang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_assembly_name: freshwater MAG --- KT6_bin-257

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcus sp.

ncbi_submitter: BILS


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Enterococcus sp. DIV1555a

ncbi_submitter: Broad Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Polaromonas jejuensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Promineifilum sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Promineifilum;x__unclassified Candidatus Promineifilum;s__Promineifilum sp.


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Testudinibacter sp. TW-1

ncbi_submitter: National Chung Hsing University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Enterococcus sp.

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Methylocystis sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Synechococcus sp. WH 5701

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Parma


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Polycyclovorans sp.


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Umea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Acetobacter malorum

ncbi_submitter: Teagasc


ncbi_organism_name: Microbacterium oxydans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Segatella copri

ncbi_submitter: University of Manitoba


ncbi_organism_name: Salmonella sp. SAL4445

ncbi_submitter: Zhejiang university


ncbi_organism_name: Spirosomataceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Australia: Australian Institute of Marine Science

ncbi_isolation_source: seawater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: Shandong University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: National Research Council Canada


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Methylophaga sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China

ncbi_isolation_source: desert regolith

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: USA: NY

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus DAR1885

ncbi_submitter: Broad Institute


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Ireland

ncbi_isolation_source: Smoker

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Microbispora bryophytorum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-0614

ncbi_organism_name: Enhydrobacter aerosaccus

ncbi_submitter: BILS


ncbi_submitter: Northeast Forestry University


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Erythrobacteraceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_submitter: IST Austria


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Oregon State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_country: Mali

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: China: Nanjing

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Kordiimonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Thailand

ncbi_isolation_source: aerial roots

ncbi_organism_name: Streptomyces radicis

ncbi_refseq_category: reference genome

ncbi_submitter: Japan Collection of Microorganisms, Microbe Division, RIKEN BioResources Center, Tsukuba, Japan


ncbi_country: Pakistan

ncbi_strain_identifiers: zumi 8

ncbi_submitter: Quaid-i-Azam University


ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Animal Quarantine Service, MAFF

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Korea

ncbi_isolation_source: automobile

ncbi_organism_name: Roseomonas sp. KE2513

ncbi_submitter: Chung ang university


ncbi_country: USA: MO

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_organism_name: Leclercia sp.


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_organism_name: Delftia tsuruhatensis


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Japan: Nagano; Suwa

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_organism_name: Deefgea sp. CFH1-16

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Korea: Republic of Gyeonggi

ncbi_isolation_source: soil

ncbi_organism_name: Delftia sp. K82

ncbi_submitter: Korea Basic Science Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Facklamia hominis

ncbi_submitter: EMG


ncbi_country: USA: New York

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MSKCC


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: BGI


ncbi_organism_name: Nostocoides japonicum T1-X7

ncbi_submitter: Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University


ncbi_assembly_name: freshwater MAG --- KR2_bin-0250

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriales bacterium UBA3115

ncbi_submitter: University of Queensland


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: Florida

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Parvibacter caecicola


ncbi_country: China: Yongzhou Hunan Province

ncbi_organism_name: Comamonas endophytica

ncbi_submitter: Research Institute of Forestry, Chinese Academy of Forestry


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Italy: Florence

ncbi_isolation_source: various material

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-5 day 773

ncbi_organism_name: Thermotoga sp.

ncbi_submitter: The Ohio State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacteriaceae bacterium


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Neisseria meningitidis NS44

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Rhizobium sp. UBA1881


ncbi_country: Bangladesh: City of Joydebpur

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California Davis


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_submitter: sichuan university


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: feces

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_country: USA: New Mexico

ncbi_isolation_source: Lake water from New Mexico (USA)

ncbi_organism_name: Vibrio tarriae

ncbi_submitter: Dr. Cheryl L. Tarr, Centers for Disease Control and Prevention


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Capnocytophaga canis

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RIFCSPLOWO2_01_FULL_39_10b


ncbi_country: South Korea: Seoul

ncbi_organism_name: Eubacterium limosum

ncbi_submitter: Korean Collection for Type Culture, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: JCVI


ncbi_country: South Korea: Jeollanam-do; Jangseong-gun

ncbi_isolation_source: Soil from military shooting range

ncbi_organism_name: Novosphingobium humi

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: USP


ncbi_assembly_name: IMG-taxon 2615840538 annotated assembly

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: EMG


ncbi_country: Sri Lanka: Anuradhpura

ncbi_isolation_source: Endorhizosphere rice

ncbi_organism_name: Pseudomonas anuradhapurensis

ncbi_submitter: KU Leuven


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_submitter: Puyang Oil Field General Hospital


ncbi_submitter: national health research institutes


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. NW303

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacillus inaquosorum


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Salmonella sp. NW262


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Jiangnan University


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: uncultured Opitutus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural Univercity


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Enterobacter asburiae


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: HOSPICES CIVILS DE LYON


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: New York

ncbi_isolation_source: resistant mutants selected from H37Rv parent strain

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Texas A&M University


ncbi_organism_name: Acinetobacter baumannii 3990

ncbi_submitter: University of Birmingham


ncbi_isolation_source: Sinus infraorbitalis

ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Foshan university


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_organism_name: Aquisalimonadaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hanzhong Central Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Megasphaera elsdenii CAG:570

ncbi_submitter: DTU


ncbi_organism_name: Pseudomonas sp. MYb330

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_submitter: The University of Hong Kong


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Agrobacterium tumefaciens


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Sanguibacteroides sp. AM78-02pH3A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: cold seep

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Bioprox


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_submitter: University of Guelph


ncbi_isolation_source: oropharynx; sputum; or bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_country: USA: AR

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: CDC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Seawater

ncbi_organism_name: Aliivibrio sifiae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Microcella pacifica

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Duodenibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Sphingomonadaceae bacterium 3R27B10

ncbi_submitter: University of Trento


ncbi_isolation_source: feces

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_isolation_source: Faeces


ncbi_submitter: University of Connecticut


ncbi_isolation_source: terrestrial

ncbi_organism_name: Kocuria sp.

ncbi_submitter: University of Queensland


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Biomin Research Center


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Staphylococcus ureilyticus

ncbi_submitter: University of Oxford


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Cornell University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: Ground water

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Stanford Healthcare


ncbi_country: Russia: Tomsk region

ncbi_isolation_source: microbial mat; developing on the wooden surface of a chute; under the flow of hot water coming from an oil exploring well

ncbi_organism_name: Melioribacter roseus P3M-2

ncbi_submitter: Centre Bioengineering RAS


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacterium sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_submitter: University of Bern


ncbi_submitter: Huzhou CDC


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: Honey

ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: University of Valladolid


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Shaanxi

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Duncaniella muris


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Odoribacter sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital of Larissa


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France

ncbi_isolation_source: birch sap

ncbi_organism_name: Lactiplantibacillus paraplantarum

ncbi_strain_identifiers: CIRM-BIA 1870

ncbi_submitter: Brigham Young University


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: India: Chora Island

ncbi_isolation_source: marine sediment

ncbi_organism_name: [Bacillus] enclensis

ncbi_submitter: CSIR-National Chemical Laboratory


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: WA

ncbi_isolation_source: celebe ape (Macaca nigra)

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Pseudorhizobium pelagicum

ncbi_submitter: University Miguel Hernandez


ncbi_country: China: Suzhou

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium bornimense

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Mesorhizobium comanense

ncbi_submitter: University of Trento


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: Wound Secretion


ncbi_country: Brazil: Grandes Rios; Parana

ncbi_isolation_source: tomato with bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Consortium EMBRAPA Vegetable Crops/UFRPE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Osaka Institute of Public Health


ncbi_country: Malaysia

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: VS

ncbi_submitter: University of Malaya


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- LJ_bin-1727

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_assembly_name: SPADES assembly of Enterobacter cloacae ND10

ncbi_country: USA

ncbi_isolation_source: excreted bodily substance

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Candidatus Sutterella merdavium

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Spirochaetia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 13

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Geminicoccaceae bacterium


ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. NW708

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_country: China: The East China Sea

ncbi_isolation_source: oxic surface sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Metamycoplasmataceae bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Peking University


ncbi_organism_name: Streptomyces amakusaensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-0209

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: marine sediment (ENVO:00002113)

ncbi_organism_name: Arenibacter sp. NBRC 103722

ncbi_submitter: Chiba University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter;x__unclassified Arenibacter;s__Arenibacter sp. NBRC 103722


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Escherichia coli E704

ncbi_submitter: Broad Institute


ncbi_country: Russia: Moscow

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: freshwater MAG --- MJ-2014-D4_bin-432

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: archaeon

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parvibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_isolation_source: Other (membrane bone implants)

ncbi_submitter: WTSI


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Desulfitobacterium hafniense DCB-2

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bifidobacterium bifidum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D8_bin-1173

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter wuhouensis

ncbi_submitter: Anhui Academy of Agricultural Sciences


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M13

ncbi_submitter: Broad Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium RIFOXYC2_FULL_46_15


ncbi_country: USA: Boston; MA

ncbi_isolation_source: brain abscess


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Poland

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica: Wilkes tip

ncbi_isolation_source: soil

ncbi_organism_name: Glaciihabitans sp. INWT7

ncbi_submitter: University of New South Wales


ncbi_country: USA: CO

ncbi_isolation_source: lung (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_organism_name: Tetragenococcus halophilus subsp. halophilus

ncbi_strain_identifiers: NISL 7121

ncbi_submitter: Genome Research Center, NODAI Research Institute, Tokyo University of Agriculture


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Delftia sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_assembly_name: Rumen uncultured genome RUG10317

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Black Sea sulfidic water cellulose enrichment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_country: Georgia: Batumi; the Black Sea coast of the Caucasus

ncbi_isolation_source: eucalyptus rhizosphere

ncbi_organism_name: Pseudomonas batumici

ncbi_strain_identifiers: UCM B-321

ncbi_submitter: Institute of Microbiology and Virology


ncbi_submitter: University of Southern California


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDQ20D66P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: bone infection of foot

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Mixta calida


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lacrimispora indolis SR3

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Ignavibacterium sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Italy: Panarea

ncbi_isolation_source: sediment

ncbi_organism_name: Gimesia panareensis

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_organism_name: Shigella boydii

ncbi_submitter: University of California at Davis


ncbi_country: USA: CT

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Italy: Emilia-Romagna

ncbi_isolation_source: Sweet Corn leaves

ncbi_organism_name: Pantoea stewartii subsp. stewartii

ncbi_submitter: University of Rome "La Sapienza"


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fluviicola sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: urine

ncbi_organism_name: Anaerococcus sp. Marseille-P9784

ncbi_submitter: URMITE


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Herbaspirillum seropedicae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Ruegeria denitrificans

ncbi_submitter: Shenzhen University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Desulfonatronovibrio sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Acetobacteraceae bacterium


ncbi_organism_name: Pseudoalteromonas mariniglutinosa

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Qinghai Province

ncbi_isolation_source: lake water

ncbi_organism_name: Vibrio salilacus

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_country: South Africa: Port Elizabeth; Algoa Bay; Indian Ocean

ncbi_isolation_source: White Sands Reef

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: PharmaSea


ncbi_country: South Korea: Gochang

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Tanganyikabacteria bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__Candidatus Tanganyikabacteria;s__Candidatus Tanganyikabacteria bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Clostridiales bacterium UBA4139

ncbi_submitter: University of Queensland


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium CG06_land_8_20_14_3_00_40_12


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0577

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Brazil

ncbi_isolation_source: midgut

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Fiocruz


ncbi_organism_name: Thalassorhabdomicrobium marinisediminis

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Xanthomonas hydrangeae

ncbi_submitter: Oregon State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Montana State University


ncbi_organism_name: uncultured Actinomycetota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: EMG


ncbi_organism_name: Zymomonas mobilis

ncbi_submitter: Teagasc


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northumbria University


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Merdisoma faecalis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Merdisoma;s__Candidatus Merdisoma faecalis


ncbi_country: South Korea

ncbi_organism_name: Streptomyces tagetis

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_isolation_source: screen

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Changbai Mountain in Jilin Province

ncbi_isolation_source: rare dormant volcanic soils

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Paenibacillus alvei

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Arctic Ocean: Beaufort Sea

ncbi_isolation_source: marine waters

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Concordia University


ncbi_organism_name: Staphylococcus aureus A8796

ncbi_submitter: Broad Institute


ncbi_country: France: Besancon

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Ensifer sp. USDA 6670

ncbi_strain_identifiers: USDA 6670

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Sinorhizobium/Ensifer group;g__Ensifer;x__unclassified Ensifer;s__Ensifer sp. USDA 6670


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli


ncbi_country: USA: International Space Station

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Biological sample (Abscess)

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: China: Liaoning

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom

ncbi_organism_name: Brucella melitensis UK37/05


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium UBA2891

ncbi_submitter: University of Queensland


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Saint-Petersburg

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_country: USA: FL

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: JCVI


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: United Kingdom: London

ncbi_isolation_source: Drain fluid

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Minnesota Department of Health Infectious Disease Laboratory Submission Group


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_country: Pakistan: Mithi

ncbi_isolation_source: Plant Root

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: KAUST


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC005576

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Arenibacterium LL02

ncbi_organism_name: Arenibacterium sp. LLYu02

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Symbiopectobacterium sp.

ncbi_submitter: Faculty of Science, University of South Bohemia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Symbiopectobacterium;x__unclassified Symbiopectobacterium;s__Symbiopectobacterium sp.


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 132

ncbi_submitter: Ghent University


ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Shenzhen people's hospital


ncbi_country: Brazil: Braganca

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA

ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: South Africa: North West

ncbi_isolation_source: maize rhizosphere

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: North West University, Mafikeng


ncbi_country: Viet Nam

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: DHS Bioreactor

ncbi_organism_name: marine bacterium B5-7

ncbi_submitter: Water Quality Control Lab, Division of Environmental Engineering, Faculty of Engineering, Hokkaido University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Peptoniphilus sp. oral taxon 375

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus;x__unclassified Peptoniphilus;s__Peptoniphilus sp. oral taxon 375


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Cypionkella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: USA: Nashville; Tennessee

ncbi_isolation_source: human stomach

ncbi_organism_name: Helicobacter pylori J166

ncbi_submitter: Penn State University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Australia: Thorneside Wastewater Treatment Plant

ncbi_isolation_source: flocular biomat

ncbi_organism_name: Micavibrio sp. UBA2400

ncbi_submitter: University of Queensland


ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Pendulispora albinea

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_country: Baltic Sea

ncbi_organism_name: Actinobacteria bacterium UBA3120


ncbi_isolation_source: human blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sapporo Medical University School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: stool

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:H8;x__Escherichia coli O111:H8 str. 2011C-3453


ncbi_country: China

ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB54

ncbi_submitter: Soochow University


ncbi_country: China: Zhejiang

ncbi_organism_name: Empedobacter stercoris

ncbi_submitter: Shenzhen People's Hospital


ncbi_isolation_source: porcine rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: EMG


ncbi_country: USA: Washington

ncbi_isolation_source: plant matter [ENVO:01001121]

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Blautia obeum

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_strain_identifiers: WHRI 5644

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: surfaces of algal species from Antarctic marine coast and sea ice

ncbi_organism_name: Cellulophaga algicola DSM 14237

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cellulophaga;s__Cellulophaga algicola;x__Cellulophaga algicola DSM 14237


ncbi_submitter: Complexo Hospitalario Universitario A Coruna


ncbi_organism_name: Paraburkholderia sabiae

ncbi_submitter: The James Hutton Institute


ncbi_country: Netherlands: Hegelsom; Chicken field

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Technical University of Denmark


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0001

ncbi_submitter: Broad Institute


ncbi_isolation_source: palm brown sugar

ncbi_organism_name: Kozakia baliensis

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Atlantibacter hermannii


ncbi_organism_name: Escherichia coli

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_isolation_source: feces

ncbi_submitter: USDA


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Actinomadura chokoriensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf140

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LHUB-ULB


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli O111:H8 str. CVM9570

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:H8;x__Escherichia coli O111:H8 str. CVM9570


ncbi_isolation_source: Ileo-caecum


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Toho University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Kazakhstan: Jambyl Region; Moiynkum District

ncbi_organism_name: Francisella tularensis

ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: Streptomyces neyagawaensis

ncbi_submitter: USDA Agricultural Research Service


ncbi_country: USA: California; Cedars Spring

ncbi_isolation_source: spring water

ncbi_submitter: National Institute of Advanced Industrial Science and Technology

ncbi_taxonomy: d__Bacteria;p__Candidatus Lithacetigenota;c__;o__;f__;g__Candidatus Psychracetigena;s__Candidatus Psychracetigena formicireducens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Lithacetigenota;g__Candidatus Psychracetigena;s__Candidatus Psychracetigena formicireducens


ncbi_country: Spain

ncbi_isolation_source: Exudate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: HOSPITAL UNIVERSITARIO REINA SOFIA DE CORDOBA


ncbi_country: China: Gaungdong

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: freshwater MAG --- VK4_bin-0324

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_country: China:Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cytotoxicus

ncbi_strain_identifiers: FAIRING 10M-2.2

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter sp. YH12097


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Pseudobutyrivibrio sp.


ncbi_organism_name: Metaclostridioides mangenotii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_country: Chile: Santiago

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_country: Brazil: Petrolina; Pernambuco

ncbi_isolation_source: stem canker

ncbi_organism_name: Xanthomonas citri

ncbi_strain_identifiers: CFBP 7764

ncbi_submitter: Institut de la Recherche Agronomique (INRA)


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: France

ncbi_isolation_source: Flamingo

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Streptomyces sp. NPDC001793

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Spain: Castellon

ncbi_organism_name: Vibrio renipiscarius

ncbi_submitter: University of Valencia


ncbi_country: Chile: Region del Bio Bio

ncbi_isolation_source: walnut tree

ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: FDA


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Sulfitobacter faviae

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Marinomonas communis


ncbi_country: USA: NYC

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Finland

ncbi_isolation_source: Antibiotic associated diarrhea; human

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Helsinki


ncbi_country: Canada

ncbi_isolation_source: forest soil

ncbi_organism_name: Bradyrhizobium sp. LTSP849

ncbi_submitter: University of British Columbia


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_submitter: universite Ibn tofail

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Negativibacillus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__unclassified Negativibacillus;s__Negativibacillus sp.


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Vernon; BC. Kalamalka Seed Orch

ncbi_organism_name: Candidatus Vallotia laricis

ncbi_submitter: University of Georgia


ncbi_country: China: Changzhou;Jiangsu

ncbi_isolation_source: Aerobic activated sludge

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: South China University of Technology


ncbi_organism_name: Leucobacter sp. MMO-66

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;s__Candidatus Taylorbacteria bacterium RIFCSPLOWO2_01_FULL_43_83


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R20(2017)

ncbi_submitter: University of Sao Paulo


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Ramlibacter tataouinensis

ncbi_submitter: University of Queensland


ncbi_isolation_source: bile

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Nanjing Drum Tower Hospital, the Affiliated Hospital of Nanjing University Medical School


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: South China Agricultural University


ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium sp. HMSC070E08

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: EMG


ncbi_organism_name: Parabacteroides sp.


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_country: USA: California; Los Angeles County

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Mycobacterium sp. MAA66

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: New York

ncbi_organism_name: Pseudomonas sp. DCB_CB

ncbi_submitter: Dominican College of Blauvelt


ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Endodontic infection

ncbi_organism_name: Prevotella intermedia

ncbi_strain_identifiers: KCOM 2069

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Terada and Riya Laboratory, Chemical engineering, Department of Technology, Tokyo university of Agriculture and Technology


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Actinomadura chibensis NBRC 106107

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Hungary

ncbi_submitter: Yale School of Public Health


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: bovine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;o__Candidatus Polarisedimenticolales;f__Candidatus Polarisedimenticolaceae;x__unclassified Candidatus Polarisedimenticolaceae;s__Candidatus Polarisedimenticolaceae bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_country: China:Ya an

ncbi_isolation_source: rhizosphere soil of healthy poplars

ncbi_organism_name: Streptomyces sampsonii

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Sierra Leone: Freetown

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Brazil:Santa Catarina; Joacaba

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_assembly_name: sal185 version2

ncbi_country: USA

ncbi_submitter: OARSA, CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans;x__Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal185


ncbi_country: Lebanon

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_organism_name: Paenibacillus harenae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: United Kingdom: Reading town waterworks

ncbi_isolation_source: Pre-filter tanks

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Environment and Climate Change Canada


ncbi_organism_name: Enterobacter hormaechei subsp. oharae

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. oharae


ncbi_submitter: Massachusetts Eye and Ear


ncbi_assembly_name: Photorhabdus temperata NC19

ncbi_country: USA: North Carolina

ncbi_isolation_source: Hemocoel of Heliothis virescens larva

ncbi_organism_name: Photorhabdus khanii NC19

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Qipengyuania citrea

ncbi_submitter: University of Southern California


ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: FL

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;x__unclassified Actinomyces;s__Actinomyces sp. oral taxon 448;x__Actinomyces sp. oral taxon 448 str. F0400


ncbi_isolation_source: fecal swab

ncbi_submitter: City University of Hong Kong


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Comamonas aquatica

ncbi_submitter: University of Queensland


ncbi_organism_name: Brevundimonas nasdae

ncbi_submitter: Tang lab


ncbi_country: Canada

ncbi_isolation_source: Avian

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: USA: Wyoming; Yellowstone National Park

ncbi_isolation_source: acidic sulfur spring

ncbi_organism_name: Rhodopila globiformis

ncbi_strain_identifiers: DSM 161

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Pluralibacter gergoviae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acetobacter sp.


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_submitter: Yangzhou University


ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_country: Spain: Asturias

ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: China: Shaanxi

ncbi_isolation_source: chicken cloacal swab

ncbi_submitter: China Agricultural University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: ANIWHA


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Ureaplasma sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from dieased colony 6

ncbi_organism_name: Pelagimonas sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Streptomyces sp. NPDC006147

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Empedobacter falsenii


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus AMMC6106

ncbi_submitter: Broad Institute