ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_level: Contig

ncbi_country: Russia: Moscow

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: RCPCM


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Massilia timonae

ncbi_submitter: University of Queensland


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: China CDC


ncbi_organism_name: Pseudomonas sp. JAI120

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Escherichia coli

ncbi_submitter: JPIAMR ARMIS


gtdb_representative: t

ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Mexico: Escuinapa; Sinaloa

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Photobacterium lucens

ncbi_strain_identifiers: CAIM 1938

ncbi_submitter: CIAD, A.C.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Rubripirellula sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Verminephrobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Chromatiales bacterium


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_organism_name: Yoonia sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: Xiamen University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Lentilactobacillus otakiensis

ncbi_submitter: Novonesis A/S


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Cupriavidus taiwanensis

ncbi_submitter: The James Hutton Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: uncultured Dysosmobacter sp.


ncbi_country: USA

ncbi_organism_name: Acidovorax sp. FJL06

ncbi_submitter: Tufts University


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Devosia sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bermanella sp.

ncbi_submitter: University of Bristol


ncbi_isolation_source: Caecum

ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: Max Planck Institute for Evolutionary Biology


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Proteiniphilum sp. UBA5260

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama Birmingham


ncbi_country: Peru: Tumbes

ncbi_isolation_source: Hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Programa Nacional de Innovación en Pesca y Acuicultura


ncbi_country: Portugal: Terceira Island; Azores

ncbi_isolation_source: surface seawater

ncbi_organism_name: Idiomarina abyssalis

ncbi_submitter: Universidade de Acores


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human tooth surface

ncbi_strain_identifiers: CECT 7746

ncbi_submitter: CSISP

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis;sb__Streptococcus oralis subsp. dentisani;x__Streptococcus oralis subsp. dentisani 7746


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Germany

ncbi_isolation_source: Dekubitus swab

ncbi_submitter: SurvCARE


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Trichlorobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Rakuno Gakuen University; Mansoura University; Zewail City of Science and Technology


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_assembly_name: freshwater MAG --- Umea3_bin-2131

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_isolation_source: Catheter Tip

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: China: Beijing

ncbi_isolation_source: throat swab


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Micromonospora tulbaghiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Salmonella enterica CVM N46820 v1.0

ncbi_country: USA: CO

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Czech Republic

ncbi_isolation_source: clinical sample

ncbi_submitter: Faculty of Medicine, Charles University


ncbi_refseq_category: reference genome

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Acrocera orbiculus


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Zoogloeaceae bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Texas

ncbi_isolation_source: eye

ncbi_submitter: Texas A&M University


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium


ncbi_country: USA: MA; Boston

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Broad Institute


ncbi_country: Canada: Lacombe

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: AAFC


ncbi_country: China: Shanghai

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_submitter: ASCENSION


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_isolation_source: water

ncbi_organism_name: Marinomonas gallaica

ncbi_strain_identifiers: CECT 5116

ncbi_submitter: UVEG


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Enterococcus sp.


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0376

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_assembly_name: IMG-taxon 2582581321 annotated assembly

ncbi_organism_name: Oceanospirillum multiglobuliferum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ureaplasma sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Poland: Wroclaw

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Duffyella gerundensis


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_country: United Kingdom

ncbi_isolation_source: Chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Phycisphaerales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Bartonella sp. CL100XZDX

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lysinibacillus irui

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. NW97

ncbi_submitter: Sichuan University


ncbi_organism_name: Sulfurospirillum sp.

ncbi_submitter: UNIVERSITY OF NORTH BENGAL


ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wyoming


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Eubacteriaceae bacterium


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang university


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Hirschia sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Russia: Kazan

ncbi_isolation_source: feces

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Kazan Federal University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridium sp.

ncbi_submitter: AAFC


ncbi_assembly_level: Chromosome

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Tongji University


ncbi_isolation_source: topsoil

ncbi_organism_name: Aneurinibacillus sp. UBA3580

ncbi_submitter: University of Queensland


ncbi_country: China: Taiwan

ncbi_isolation_source: soil

ncbi_organism_name: Thermoactinomyces sp. CICC 10520

ncbi_submitter: China National Research Institute of Food and Fermentation Industries


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Deltaproteobacteria bacterium TMED126

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium TMED126


ncbi_organism_name: Streptomyces chrestomyceticus JCM 4735

ncbi_submitter: Biological Resource Center


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada

ncbi_isolation_source: Rectum

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_organism_name: Bradyrhizobium sp. SZCCHNS30572

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Rectinemataceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Achromobacter mucicolens

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA: OK

ncbi_isolation_source: antelope sable feces (Hippotragus niger variani)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: United Kingdom:Midlands

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 395


ncbi_country: Costa Rica

ncbi_organism_name: Leptospira santarosai

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Agathobaculum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Brooks

ncbi_isolation_source: Cattle feces

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Stirling


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_assembly_name: Rumen uncultured genome RUG11258

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Yersinia pestis MGJZ12

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Peru: Iquitos

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of Maryland Eastern Shore


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Muribaculum gordoncarteri

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: SCOPE


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: China: Jinxian; Jiangxi

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium anhuiense

ncbi_submitter: Northwest A&F University


ncbi_country: Slovenia: Zgornja Scavnica

ncbi_isolation_source: apple cider vinegar

ncbi_organism_name: Gluconacetobacter entanii

ncbi_submitter: University of Maribor, Faculty of Natural Sciences and Mathematics


ncbi_isolation_source: marine

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- Loclat_bin-01787

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_assembly_name: freshwater MAG --- Erken-D5_bin-0450

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Florida


ncbi_country: China

ncbi_isolation_source: root

ncbi_organism_name: Micromonospora endophytica

ncbi_submitter: Japan Collection of Microorganisms, Microbe Division, RIKEN BioResources Center, Tsukuba, Japan


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: water

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: UCM


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Acinetobacter seifertii


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Acidobacteriota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Streptomyces sp. NPDC058369

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of the Witwatersrand


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: SPRUCE 694

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 694

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Mississippi State University


ncbi_assembly_name: freshwater MAG --- Erken-D8_bin-1012

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: South Africa

ncbi_isolation_source: seeds

ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: North-West University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W92106

ncbi_submitter: Broad Institute


ncbi_organism_name: Psychrobacter sanguinis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Kenya: Kajiado County

ncbi_isolation_source: termite gut

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolate: MEAT

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: MEAT;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Hong Kong: Telegraph Bay

ncbi_isolation_source: fingertip

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_country: Burkina Faso

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Clostridium] leptum


ncbi_country: USA

ncbi_isolation_source: Soil with decomposing organic matter; Idaho

ncbi_organism_name: Streptomyces viridosporus T7A

ncbi_submitter: JGI


ncbi_isolation_source: marine metagenome


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: China: Malan

ncbi_organism_name: Rufibacter sp. LB8

ncbi_submitter: BGI-Qingdao


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0478R

ncbi_submitter: Broad Institute


ncbi_country: USA: Wildcat Cove Preserve; FL

ncbi_isolation_source: gill sample from 2 different clams

ncbi_organism_name: Candidatus Sedimenticola endophacoides

ncbi_submitter: Clemson University


ncbi_assembly_name: Rumen uncultured genome RUG11318

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B4(2017)

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Human urine sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eastern Regional Research Center


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_country: France

ncbi_isolation_source: Corse; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: Stanford University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: University of Georgia


ncbi_country: Belgium

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Sciensano


ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: Icahn School of Medicine


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pathology Lab

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Gemmataceae bacterium


ncbi_organism_name: Streptococcus agalactiae MRI Z1-038

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: China: Shenzhen

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: blood culture

ncbi_organism_name: Dysgonomonas mossii

ncbi_strain_identifiers: Shenzhen WH 0221

ncbi_submitter: Medical Laboratory


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef macroalgae biofilm

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: James Cook University


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Yersinia enterocolitica

ncbi_strain_identifiers: SM 25

ncbi_submitter: Sassari University


ncbi_country: Italy: Foglizzo (TO)

ncbi_isolation_source: Mozzarella

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: Universita di Torino


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptomyces sp. NPDC051917

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany

ncbi_submitter: unverisity medical center groningen


ncbi_country: South Korea: Seoul

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Korea Food Research Institute


ncbi_assembly_name: Rumen uncultured genome RUG061

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Sputum sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Rouen University


ncbi_organism_name: Vreelandella venusta

ncbi_submitter: Universidad Autonoma Metropolitana. Lerma


ncbi_country: Japan: Miyazaki

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. LLC-1

ncbi_submitter: Fucculty of Engineering, University of Miyazaki


ncbi_country: Germany: Kleine Kinzig Reservoir

ncbi_isolation_source: water

ncbi_organism_name: Lelliottia amnigena

ncbi_submitter: TZW: DVGW-Technologiezentrum Wasser


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: China: Lake Dianchi

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Germany: Helgoland Roads

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Winogradskyella ludwigii

ncbi_submitter: Mediterranean Institute For Advanced Studies


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Chicago

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_submitter: The University of Sydney


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Bacillus sp. J5TS4

ncbi_submitter: National Agriculture and Food Research Organization

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. J5TS4


ncbi_country: Russia: Kazan

ncbi_organism_name: Acholeplasma laidlawii

ncbi_submitter: Kazan Institute of Biochemistry and Biophysics of the Kazan Scientific Center of the Russian Academy of Sciences


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: uncultured Aquificales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: San Francisco; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Granulicella sp.

ncbi_submitter: EPFL


ncbi_country: Canada: Quebec

ncbi_isolation_source: swab

ncbi_organism_name: Raoultella terrigena

ncbi_submitter: Government of Canada


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: Proximal colon


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Morganella morganii

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: University of Fribourg


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Trabulsiella odontotermitis

ncbi_strain_identifiers: MLNSH 35

ncbi_submitter: Medical and Environmental Biotechnology Laboratory


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Elizabethkingia anophelis subsp. anophelis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Acinetobacter calcoaceticus NIPH 13

ncbi_strain_identifiers: NIPH 13

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter calcoaceticus;x__Acinetobacter calcoaceticus NIPH 13


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM3158

ncbi_submitter: IGS


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Nitrospina sp.


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: SiChuan

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: USA: Michigan

ncbi_organism_name: Methylobacterium sp. PvR107

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Escalon; California

ncbi_isolation_source: almond drupe

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: Canada: Prince Edward Island

ncbi_isolation_source: Imported/domestic retail Mussels

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 4992

ncbi_submitter: Ghent University


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_country: USA: OR

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Veillonella sp.


ncbi_country: Mexico: Yucatan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: CINVESTAV-IPN


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Lachnoanaerobaculum sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: Riverside soil

ncbi_organism_name: Microcella daejeonensis

ncbi_submitter: Department of Microbiology and Molecular Biology


ncbi_country: Germany

ncbi_isolation_source: Food (curry)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 23.F.01


ncbi_country: Canada: Manitoba

ncbi_isolation_source: Hand wound

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_country: Canada: Mont-Saint-Hilaire (QC)

ncbi_isolation_source: tree leaf surface

ncbi_organism_name: Methylobacterium sp. J-077

ncbi_submitter: Universite du Quebec a Montreal


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: OH

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Algeria

ncbi_isolation_source: forest soil [ENVO_00002261]

ncbi_organism_name: Streptomyces sp. GESEQ-35

ncbi_submitter: Czech Academy of Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Seoul National University Children's Hospital


ncbi_country: Viet Nam

ncbi_isolation_source: Gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: BGI


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Washington


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: University of Sheffield


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: United Kingdom

ncbi_isolation_source: plant (decomposed)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: CIRM-BIA 865

ncbi_submitter: Brigham Young University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2600255256 annotated assembly

ncbi_organism_name: Kosakonia radicincitans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Egypt

ncbi_isolation_source: rectal swab

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: environment


ncbi_country: China: Beijing

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Japan

ncbi_isolation_source: catheter urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho university


ncbi_country: Colombia: Pereira

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: Yak fermented milk

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Ocean University of China


ncbi_organism_name: Enterococcus faecalis


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Nitrospinota;x__unclassified Nitrospinota;s__Nitrospinae bacterium RIFCSPHIGHO2_02_39_11


ncbi_isolation_source: food

ncbi_submitter: University of California at Davis


ncbi_organism_name: Prevotella sp.


ncbi_genome_category: derived from single cell

ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: water

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: TZW: DVGW-Technologiezentrum Wasser


ncbi_organism_name: Ruminococcaceae bacterium R-25

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: EMG


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Escherichia coli

ncbi_submitter: IST Austria


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Instituto de Patologia Vegetal CIAP-INTA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__unclassified Candidatus Phytoplasma;s__'Conium maculatum' witches'-broom phytoplasma


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Hainich National Park; Hainich Critical Zone Exploratory

ncbi_isolation_source: groundwater from well H41 incubated with 12C bicarbonate for 21 days

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Friedrich Schiller University Jena


ncbi_isolation_source: Kidney

ncbi_organism_name: Actinobacillus equuli


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Heteroclostridium;s__Candidatus Heteroclostridium caecigallinarum


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: South Korea: the Yellow Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudidiomarina halophila

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H21924

ncbi_submitter: Broad Institute


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: UZ Gent


ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: USDA ARS


ncbi_country: USA: Philadelphia

ncbi_isolation_source: cecal content

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pennsylvania


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Rariglobus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Staphylococcus aureus VET0384R


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Herpetosiphon giganteus

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Marinobacter aromaticivorans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_isolate: AOP5_B2_surf _bin _12

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP5_B2_surf _bin _12

ncbi_submitter: Genoscope


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Streptomyces sp. NPDC058548

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: Viet Nam

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_isolation_source: Urine

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: Salmonella enterica CVM N48711 v1.0

ncbi_country: USA: TN

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: China: Sichuan

ncbi_isolation_source: Sichuan; China

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: Germany

ncbi_isolation_source: pig

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 11519

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Pseudomonas aeruginosa PAO1-GFP

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Mycobacterium aquaticum

ncbi_submitter: San Raffaele Scientific Institute


ncbi_isolation_source: clinical

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1594


ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Actinomyces dentalis

ncbi_submitter: EMG


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Ireland: Dublin

ncbi_isolation_source: periorbital

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Trinity College Dublin


ncbi_country: Senegal

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: Universidade de Santiago de Compostela


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_assembly_name: freshwater MAG --- Umea_bin-07273

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Turkey

ncbi_submitter: Republic of Turkey, Ministry of Health Directorate General Public Health


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: NATIONAL SCHOOL OF BIOLOGICAL SCIENCES


ncbi_organism_name: Segatella maculosa


ncbi_country: Thailand: Hat Yai City; Songkhla province

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Egypt

ncbi_isolation_source: Sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Notre Dame


ncbi_country: Malaysia: Kuala Lumpur; PPUM

ncbi_isolation_source: hospital wastewater

ncbi_organism_name: Staphylococcus sp. SNAZ 75

ncbi_strain_identifiers: SNAZ 75

ncbi_submitter: MJIIT


ncbi_organism_name: Bacteroides faecis MAJ27

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Washington


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Devosia equisanguinis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood from diabetes; hypertension patient

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Guangzhou University of Chinese Medicine


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas cucumis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_country: China: Shaanxi

ncbi_isolation_source: Bacterial canker of kiwifruit

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_country: USA

ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_4 depth 0-3 cm

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Shewanella vesiculosa

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium scardovii;x__Bifidobacterium scardovii JCM 12489 = DSM 13734


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: environmental: river/lake

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: Bladder urine

ncbi_submitter: Federal University of Rio Grande do Sul (UFRGS)


ncbi_country: Poland

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_country: Rwanda: Huye

ncbi_submitter: University of Rwanda

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: France: Savoie region; French Alps

ncbi_organism_name: Mycoplasma feriruminatoris

ncbi_submitter: INRAE Univ Bordeaux


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Fibrobacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_country: USA: Washington DC

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Limosilactobacillus coleohominis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Instituto Nacional de Salud del Peru


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus mundtii


ncbi_country: USA

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus oralis subsp. tigurinus

ncbi_strain_identifiers: DGIIBVI

ncbi_submitter: University of Malaya


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Intrasporangium sp.


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Faecalibacterium wellingii

ncbi_strain_identifiers: HTF-F

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada: Lacombe

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: AAFC


ncbi_country: Trinidad and Tobago

ncbi_isolation_source: swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of the West Indies


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: USA: Pittsburgh; PA

ncbi_isolation_source: eye

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: University of Mississippi Medical Center


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Beijing

ncbi_isolate: UHB

ncbi_isolation_source: Artificial municipal wastewater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_strain_identifiers: UHB

ncbi_submitter: Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Comamonas aquatilis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_assembly_name: Complete genome of Amaricoccus sp. B4

ncbi_organism_name: Amaricoccus sp. B4

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Anhui Science and Technology University


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. 2020_378

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Aestuariirhabdus sp. LZHN29

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Candidatus Merdisoma sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Merdisoma;x__unclassified Candidatus Merdisoma;s__Candidatus Merdisoma sp.


ncbi_organism_name: Bacillus altitudinis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Halobacteriovorax sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Alphaproteobacteria bacterium UBA7488

ncbi_submitter: University of Queensland


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thalassolituus sp. UBA1503


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MIT


ncbi_country: USA: OK

ncbi_isolation_source: antelope sitatunga feces (Tragelaphus spekii)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: groundwater

ncbi_organism_name: Parachlamydiales bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: France

ncbi_isolation_source: lymph node

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG11995

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ruminococcus sp. AM31-32

ncbi_submitter: BGI


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Cow

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Hospital Basel


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Gansu

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_country: India: Lucknow; Ummari Village

ncbi_isolation_source: hexachlorocyclohexane-contaminated soil

ncbi_organism_name: Sphingobium quisquiliarum P25

ncbi_submitter: University Of Delhi


ncbi_country: Chile

ncbi_isolation_source: fresh hass avocado

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Streptomyces antimycoticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: small intestine

ncbi_submitter: Yangzhou University


ncbi_country: South Korea:West Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Flaviramulus sp. BrNp1-15

ncbi_submitter: Chungbuk national university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Agathobaculum pullistercoris

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Alphaproteobacteria bacterium UBA2662

ncbi_submitter: University of Queensland


ncbi_submitter: Chinese center for disease control and prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Alteromonadales;f__Shewanellaceae;g__Shewanella;s__Shewanella algae;x__Shewanella algae JCM 21037 = NBRC 103173


ncbi_country: USA:New York; CentralHarlem

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: United Kingdom:Berkshire

ncbi_isolation_source: wound


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Russia: Siberia

ncbi_isolation_source: acidic Sphagnum peat bogs

ncbi_organism_name: Granulicella aggregans

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-144

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_strain_identifiers: new MAG-144

ncbi_submitter: Micoorganism


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: East China University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli O7:H4

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_country: USA: University of Michigan Hospital; Ann Arbor; MI

ncbi_isolation_source: feces from healthy female

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Michigan


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_assembly_name: freshwater MAG --- Loc090519-6m_bin-0156

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Moscow


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: bacterium UBA6025


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: ETH Zurich


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Streptomyces sp. NPDC006864

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Reunion: Saint-Denis

ncbi_isolation_source: Peritoneal fluid

ncbi_submitter: CHU de Rennes


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Oman: Somail Ophiolite

ncbi_isolation_source: Water sample from WAB188 Well

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteroidales bacterium UBA5773

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5773


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolate: metabat2_6755_HET_CTRL_metaflye.735 MAG

ncbi_organism_name: Candidatus Merdibacter merdigallinarum

ncbi_strain_identifiers: metabat2_6755_HET_CTRL_metaflye.735 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Agrobacterium fabrum

ncbi_submitter: Academia Sinica


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: University of florida


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EMG


ncbi_country: Canada: Ontario

ncbi_submitter: Ministry of Health, National Public Health Laboratory


ncbi_organism_name: Actinophytocola sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus hominis


ncbi_organism_name: Treponema pallidum

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium CG_4_10_14_0_2_um_filter_36_16


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Streptomyces sp. NPDC051173

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: water from a container for water evaporation

ncbi_organism_name: Sutcliffiella horikoshii

ncbi_strain_identifiers: BAT

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium RIFOXYD2_FULL_39_9


ncbi_country: USA

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Paraglaciecola psychrophila

ncbi_submitter: University of East Anglia


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: National Biopesticide Engineering Technology Research Center, Hubei Academy of Agricultural Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Variovorax atrisoli

ncbi_strain_identifiers: tm

ncbi_submitter: Suzhou University of Science and Technology


ncbi_organism_name: uncultured Rhodoferax sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Desulfomonilaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EBI


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Beitun;Xinjiang

ncbi_isolation_source: Freshwater products of animal origin from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Anaerolineaceae bacterium


ncbi_country: Kuwait

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kuwait University


ncbi_isolation_source: leaf spots

ncbi_organism_name: Xanthomonas arboricola pv. corylina

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Microcella indica

ncbi_submitter: Third Institute Of Oceanography,MNR


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: marine ANAMMOX bioreactor

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: KAUST


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Ruthenibacterium sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Paenibacillus sp. FSL K6-2859

ncbi_submitter: Penn State


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Caecibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: US Food and Drug Administration


ncbi_country: Saudi Arabia: Thuwal; RO plant located on Red Sea

ncbi_isolation_source: biofilm from MB_RO membrane1

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-436-E22

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Australia: Queensland

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Australian centre for genomic epidemiological Microbiology


ncbi_country: USA: MA

ncbi_isolation_source: stool

ncbi_submitter: Arizona State Public Health Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: USA: Walter Reed Army Medical Center

ncbi_isolation_source: Severe Trauma Site bone

ncbi_submitter: Miami University


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED09

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED09


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: China: Zhejiang

ncbi_isolation_source: food

ncbi_organism_name: Salmonella sp. zj-f77

ncbi_submitter: Shenzhen People's Hospital


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Jacksonbacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Jacksoniibacteriota;x__unclassified Candidatus Jacksonbacteria;s__Candidatus Jacksonbacteria bacterium


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Netherlands

ncbi_isolation_source: disinfectant-free drinking water; site 5

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: University of Glasgow


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Friedrich-Loeffler-Institut, Institute of Molecular Pathogenesis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Milwaukee; Wisconsin

ncbi_isolation_source: beach water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin-Milwaukee


ncbi_country: Iran: Tehran

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Pasteur Institute of Iran


ncbi_country: South Korea: Gangwon

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: National Academy of Agricultural Science, RDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 36

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: UI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Acutalibacter muris


ncbi_isolate: OS 8

ncbi_strain_identifiers: OS 8

ncbi_submitter: AIT


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W75132

ncbi_submitter: Broad Institute


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 29

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Turkey

ncbi_isolation_source: yogurt

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: PANAGRO TARIM HAYVANCILIK GIDA SAN. VE TIC. A.S.


ncbi_country: Belgium: Ghent

ncbi_isolation_source: top soil

ncbi_organism_name: Burkholderia sp. R-70211

ncbi_submitter: LM-UGent