ncbi_organism_name: Thermoanaerobaculia bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Delaware Bay

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Bay water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Clemson University


gtdb_representative: f

ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: AAFC


ncbi_assembly_level: Scaffold

ncbi_organism_name: Azomonas macrocytogenes

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: CECT 4462

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Mediterranean Sea

ncbi_isolation_source: Mediterranean Sea sediments

ncbi_organism_name: Pseudophaeobacter leonis

ncbi_submitter: Centre de Biophysique Moleculaire


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The first affiliated hospital of zhejiang university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: fecal swab32

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Animal Disease Prevention and Food Safety Key Laboratory of Sichuan


ncbi_country: Russia: Saratov

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_assembly_level: Complete Genome

ncbi_country: Australia

ncbi_submitter: University of Melbourne


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_isolation_source: BONE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Gambia

ncbi_isolation_source: nasopharynx

ncbi_submitter: Murdoch Children's Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bilophila wadsworthia


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Louisiana state university


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: addis ababa university


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Roseibium sp.


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU024

ncbi_submitter: Technical University of Denmark


ncbi_country: Spain: Galicia

ncbi_isolation_source: female 63 year old colorectal cancer patient 79 colon adenocarcinoma

ncbi_organism_name: Parvimonas micra

ncbi_submitter: Biomedical research institute (INIBIC)


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Abe hydrothermal plume 200m

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatus Lambdaproteobacteria;x__unclassified Candidatus Lambdaproteobacteria;s__Candidatus Lambdaproteobacteria bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin N2.22

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_strain_identifiers: bin N2.22

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_country: USA: Michigan

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_country: China: Hubei

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wuhan CDC


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Korea

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0683

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycolicibacterium sp.

ncbi_submitter: University of South Africa


ncbi_organism_name: Streptomyces sp. NBC_00271

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_country: South Korea: Gangwon-do

ncbi_isolation_source: soil

ncbi_organism_name: Spirosoma validum

ncbi_submitter: Seoul Women's University


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_organism_name: Mycobacterium sp. URHB0044


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Municipal Center for Disease Control & Prevention


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Zhejiang University


ncbi_country: USA: California; Middletown

ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: China Agricultural University


ncbi_submitter: Sao Paulo State University-FCAVUnesp

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: DOE JGI


ncbi_country: United Kingdom

ncbi_isolation_source: Healthy human

ncbi_organism_name: Corynebacterium pseudogenitalium

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: USA: Cincinatti

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: China:Henan; Ruzhou

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Streptacidiphilus sp. MAP12-20

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Seoul National University


ncbi_country: South Africa: Mafikeng; Mafikeng Provincial Hospital

ncbi_isolation_source: diarrhea sample from child under the age of five

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: North-west University


ncbi_organism_name: Streptomyces albogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Xiamen University


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Burkholderia sp. SIMBA_043

ncbi_submitter: SIMBA


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Rhodocyclaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Wyoming


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Clostridium tetani

ncbi_submitter: Laboratory of Bacterial Genomics Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Bacillus cereus group sp. MYBK242-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK242-2


ncbi_organism_name: Streptomyces sp. NPDC007914

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sulfitobacter sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Chattogram Veterinary and Animal Sciences University


ncbi_assembly_name: Rumen uncultured genome RUG13537

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Providencia stuartii

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Canada: Sooke River

ncbi_isolation_source: pinacoderm; endoderm; and surrounding water

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Providencia manganoxydans


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Calgary; Wastewater treatment plant

ncbi_isolation_source: Wastewater

ncbi_organism_name: Salmonella enterica


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0970

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Microbacterium marinum

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: Caecum


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: EMG


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Clostridium sp. 29_15


ncbi_assembly_name: freshwater MAG --- LaPlata-7m-a_bin-035

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0369

ncbi_organism_name: uncultured Acetobacteraceae bacterium


ncbi_organism_name: Candidatus Avelusimicrobium fimicolum


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_strain_identifiers: BGSC 4AJ1

ncbi_submitter: University of Bath

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar monterrey


ncbi_country: India: Meghalaya

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Russia: Lake Solenoye; Omsk

ncbi_isolation_source: water

ncbi_organism_name: Arthrospira sp. O9.13F

ncbi_submitter: University of Gdansk


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Rhabdochlamydiaceae bacterium

ncbi_submitter: CRC RESIST


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0179R


ncbi_organism_name: Candidatus Peribacteraceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;x__unclassified Candidatus Peribacteraceae;s__Candidatus Peribacteraceae bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0115


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Phragmitibacter sp.

ncbi_submitter: EPFL


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Thermoflexibacter sp.

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Bacillus sp. ISL-41

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ISL-41


ncbi_organism_name: Limnospira sp. PMC 1240.20

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_country: France

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasma mycoides subsp. mycoides

ncbi_submitter: IZSAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. mycoides


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Palacky University Olomouc


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Sphingobacterium sp. E70

ncbi_submitter: Korea University


ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: The First Hospital of Jilin University


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01313

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01313


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Salmonella sp. NW243

ncbi_submitter: Sichuan University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: San Diego; Univ. of California

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Escherichia coli K-12

ncbi_strain_identifiers: MG1655 substrain BOP27

ncbi_submitter: NASA


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Slovakia: Ruzomberok

ncbi_isolation_source: smear from the endotracheal cannula

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: Russia: Orenburg

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Institute for Cellular and Intracellular Symbiosis


ncbi_assembly_name: PiZT

ncbi_country: China: Shanghai

ncbi_isolation_source: root canal

ncbi_organism_name: Prevotella intermedia ZT

ncbi_strain_identifiers: ZT

ncbi_submitter: Bio-X Institutes, Shanghai Jiao Tong University


ncbi_organism_name: uncultured Oceanospirillales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes putredinis


ncbi_country: USA: Ohio

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas sp. C2B4

ncbi_submitter: The Ohio State University


ncbi_isolation_source: co-cultured for 2 years and then re-isolated

ncbi_organism_name: Picosynechococcus sp. PCC 7002

ncbi_submitter: Qingdao institute of bioenergy and biotechnology


ncbi_country: India

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolate: metabat2_coassembly_bwa.128 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.128 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Kingston University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Streptococcus gallolyticus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Hong Kong

ncbi_isolation_source: water

ncbi_organism_name: Verrucomicrobia bacterium UBA5540

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA5540


ncbi_organism_name: Bacillus sp. CCNWLW194

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CCNWLW194


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_submitter: Foundation for Applied Molecular Evolution


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Oceanicaulis sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China

ncbi_isolation_source: full-scale anaerobic digsetion effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_isolation_source: clinical

ncbi_submitter: OARSA, CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans;x__Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal681


ncbi_country: Singapore

ncbi_isolation_source: 30 degree sequencing batch reactor activited sludge day 294

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: Activated sludge

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kaistella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: blood

ncbi_submitter: University of Sao Paulo


ncbi_country: Brazil


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Henriciella pelagia

ncbi_submitter: EMG


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Succiniclasticum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Queen's University Belfast


ncbi_organism_name: Pseudoalteromonas rhizosphaerae

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: This work was funded by the University Paris-Sud, France. R.A.B., L.D., and T.N. are members of the Laboratory of Excellence in Research on Medication and Innovative Therapeutics (LERMIT), supported by a grant from the French National Research Agency (ANR-10-LABX-33). This work was also supported by the “PHC Utique” program of the French Ministry of Foreign Affairs, the French Ministry of Higher Education, Research and Innovation and the Tunisian Ministry of Higher Education and Scientific Research under the CMCU project number 21G0807.


ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Candidatus Scatomorpha sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;x__unclassified Candidatus Scatomorpha;s__Candidatus Scatomorpha sp.


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: Tsinghua university


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Rosistilla oblonga

ncbi_submitter: Ocean University of China


ncbi_organism_name: Eshraghiella crossota


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Australia: Brisbane

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG14212

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Ewha Womans University Seoul Hospital


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolate: Bosea sp. 125

ncbi_organism_name: Bosea sp. 125

ncbi_strain_identifiers: Bosea sp. 125

ncbi_submitter: Elham Karimi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. 125


ncbi_country: Malaysia

ncbi_isolation_source: Gastric Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. OM02-16LB

ncbi_submitter: BGI


ncbi_country: China: Guangxi

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Russia: Central Region

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Ernst VIZh Federal Science Center; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: Northumbria University


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: feaces

ncbi_organism_name: Campylobacter hyointestinalis subsp. hyointestinalis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: Oral microbiome

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: VG 2

ncbi_submitter: Sofia University "St. Kliment Ohridski"


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Queensland


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_assembly_name: Rumen uncultured genome RUG601

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Beijing

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: France: Normandy

ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: LABEO


ncbi_isolation_source: Colon


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gaminara


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Paraclostridium sordellii


ncbi_country: Pacific Ocean

ncbi_organism_name: Roseibium aggregatum

ncbi_submitter: Ocean University of China


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Italy: Thiesi

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_country: India

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_country: USA: WI

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: University of York

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Buchnera;s__Buchnera aphidicola;x__Buchnera aphidicola (Acyrthosiphon pisum);x__Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)


ncbi_country: South Africa: Tau Tona mine in Carletonville district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CNRS UMR6197

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Second Affliated Hospital of Kunming Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Oman

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: United Kingdom: England

ncbi_isolation_source: Respiratory specimen

ncbi_organism_name: Mycoplasmoides pneumoniae M1139

ncbi_submitter: University of Alabama at Birmingham


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0179

ncbi_strain_identifiers: VRE 13

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Ignavibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- Erken-D8_bin-0643

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Campylobacter aviculae

ncbi_submitter: MIT


ncbi_organism_name: Pseudomonas juntendi


ncbi_organism_name: Pseudomonas sp. NY15435

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: Nanjing University


ncbi_submitter: Lithuanian University of Health Sciences


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Gardnerella sp.

ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 99594;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA: Chicago

ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptomyces sp. NPDC006463

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Global Health Research Unit

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Italy

ncbi_isolation_source: sorghum sourdough

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Hoeflea sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Xanthomonas arboricola pv. fragariae

ncbi_submitter: JLU


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Colombia: Boyaca

ncbi_isolation_source: roots

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: NIH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: Bobovac

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: the intestinal contents of Marmot

ncbi_organism_name: Cellulomonas xiejunii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_submitter: IMPERIAL COLLEGE LONDON

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Gallionella sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alcanivorax sp. UBA1911

ncbi_submitter: University of Queensland


ncbi_country: Denmark: Copenhagen

ncbi_submitter: Copenhagen University Hospital Hvidovre


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Basel


ncbi_country: India: Thanjavur

ncbi_submitter: SASTRA University


ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__candidate division WOR-1 bacterium RIFOXYA2_FULL_51_19


ncbi_country: Italy: Casola Valsenio

ncbi_isolation_source: stem and leaf

ncbi_organism_name: Pseudomonas sp. EpS/L25

ncbi_submitter: University of Florence


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Deep throat swab

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Salmonella sp. NW225

ncbi_submitter: Sichuan University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Salmonella sp. NW1193


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Lawsonibacter sp. LCP25S3_E2

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_assembly_name: Rumen uncultured genome RUG11216

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany

ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Enterococcus sp. FR165

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium segne

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Japan: Horonobe URL

ncbi_submitter: UC Berkeley


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Clostridium sp. ZS2-4

ncbi_submitter: Zhejiang University


ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_strain_identifiers: ACRQT

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Radboud University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus 3256

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 3256


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: hydrothermal sediments grown in hydrogenotrophic sulfate-reducing enrichment at 60 degrees Celsius

ncbi_organism_name: Candidatus Desulfofervidus auxilii

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy: d__Bacteria;p__Thermodesulfobacteriota;c__Candidatus Desulfofervidia;o__Candidatus Desulfofervidales;f__Candidatus Desulfofervidaceae;g__Candidatus Desulfofervidus;s__Candidatus Desulfofervidus auxilii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Desulfofervidia;o__Candidatus Desulfofervidales;f__Candidatus Desulfofervidaceae;g__Candidatus Desulfofervidus;s__Candidatus Desulfofervidus auxilii


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Belgium

ncbi_submitter: KU Leuven


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_country: Italy: Sardinia

ncbi_isolation_source: milk from clinical mastitis-infected mammaries

ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Monash University


ncbi_organism_name: Enterococcus villorum ATCC 700913

ncbi_submitter: Broad Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa BWHPSA022


ncbi_country: Russia

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Centre of Biotechnology of Sfax


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: Methylobacterium cerastii

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: China: Henan

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Sciences


ncbi_organism_name: bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Thailand: Uttaradit

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kasetsart University


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: University of Queensland


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 648902 6-8


ncbi_country: USA: VA

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: lake water

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: BGI-Shenzhen


ncbi_country: Czech Republic: Jin

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Charles University in Prague


ncbi_country: Puerto Rico: BARCELONETA

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Antarctica

ncbi_organism_name: Flavobacterium sp. 7E

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: NY

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus


ncbi_country: USA: MS

ncbi_isolation_source: Clinical specimen

ncbi_organism_name: Staphylococcus aureus DAR3507

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Shandong University


ncbi_country: China: Shandong

ncbi_isolation_source: anal swabs from commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Caulobacteraceae bacterium


ncbi_organism_name: Helicobacter typhlonius


ncbi_submitter: National Health Research Institutes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Maritalea sp.

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: Streptomyces noursei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudoflavonifractor gallinarum

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: Bdellovibrionales bacterium Ga0074137

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Bdellovibrionales bacterium Ga0074137

ncbi_submitter: University of Glasgow


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Memphis; TN

ncbi_isolation_source: stool sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


gtdb_type_species_of_genus: t

ncbi_country: China: Nanjing

ncbi_isolation_source: sludge

ncbi_organism_name: Ruicaihuangia caeni

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Sporosarcina oncorhynchi

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium


ncbi_country: Czech Republic: Sumperk

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: Forschungszentrum Borstel, Germany


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf093

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: University of Chicago


ncbi_country: China: Malan

ncbi_organism_name: Janibacter melonis

ncbi_submitter: BGI-Qingdao


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institute of Biotechnology


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: Yangzhou university


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Enterobacteriaceae bacterium UBA5995

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MidWest; broiler breeder farm 14

ncbi_isolation_source: Environmental bootie

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-052

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Cepheid


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_assembly_name: freshwater MAG --- Ja1-D2_bin-1397

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_organism_name: Sphingopyxis bauzanensis

ncbi_submitter: University of Utah


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_50_10b


ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_country: India: Vellore

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: Milwaukee

ncbi_isolation_source: Sink

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Buchnera aphidicola (Astegopteryx bambusae)

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Spain

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: CHU A Coruna


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_assembly_name: freshwater MAG --- MJ130820A_bin-358

ncbi_organism_name: uncultured Methylococcaceae bacterium


ncbi_organism_name: Helicobacter pylori SA233C

ncbi_submitter: MHH


ncbi_assembly_name: Rumen uncultured genome RUG10986

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zymo Research Corporation


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_country: Canada: Alberta

ncbi_isolation_source: Popliteal fossa swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Microbiology Laboratory


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: Ghana

ncbi_isolation_source: fish

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_assembly_name: Rumen uncultured genome RUG663

ncbi_organism_name: uncultured Lentisphaerota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__environmental samples;s__uncultured Lentisphaerota bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Antarctica: Berntsen Point

ncbi_organism_name: Sporosarcina sp. BP05

ncbi_submitter: International Medical University, IMU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Germany: somewhere in NRW

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Cologne


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_12_FULL_43_26


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Methylophaga sp.

ncbi_submitter: EMG


ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Atlantibacter hermannii


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: Italy: Florence

ncbi_isolation_source: bronchoaspiration material

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: water

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium divergens


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_organism_name: Escherichia coli


ncbi_country: Canada: Guelph

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_country: China: Xuzhou

ncbi_isolation_source: milking environment

ncbi_organism_name: Shewanella sp. JNE8

ncbi_submitter: Yangzhou University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Kiel University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of New South Wales


ncbi_organism_name: Pedobacter sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coriobacteriaceae bacterium AF45-1

ncbi_submitter: BGI-Shenzhen


ncbi_country: Japan

ncbi_isolation_source: excrement

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Rakuno Gakuen University


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Denmark: Mariagerfjord

ncbi_isolation_source: activated sludge from Mari_18-Q3-R65-66

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: India: Nagpur

ncbi_isolation_source: sludge from phenol fed wastewater aerobic bioreactor

ncbi_organism_name: Pandoraea pnomenusa

ncbi_submitter: CSIR-National Environmental Engineering Research Institute


ncbi_country: USA: Rifle; CO

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPLOWO2_12_FULL_40_10


ncbi_country: USA

ncbi_organism_name: Escherichia coli 96.0427

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_country: China: Beijing

ncbi_isolation_source: vaginal

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1526966


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Yersinia pestis

ncbi_submitter: University of Missouri


ncbi_organism_name: Chryseobacterium sp. MMS23-Vi53

ncbi_submitter: Chungnam National University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Salmonella sp. NW791

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Binatus sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;x__unclassified Candidatus Binatus;s__Candidatus Binatus sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Elizabethkingia occulta

ncbi_strain_identifiers: YZY

ncbi_submitter: Enze Hospital


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Spirosoma sp.

ncbi_submitter: Spribille Lab


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium CG_4_8_14_3_um_filter_36_12


ncbi_submitter: concordia university


ncbi_country: China: Heilongjiang Province

ncbi_isolation_source: lung sample of a healthy pig

ncbi_organism_name: Lactococcus sp. bn62

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Edwardsiella ictaluri

ncbi_strain_identifiers: EILO

ncbi_submitter: USDA


ncbi_country: Nigeria: Enugu

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WAC 06725

ncbi_submitter: McMaster University


ncbi_organism_name: Microcoleus sp. Pol14D4

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: wound scalp

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Poland: North-East

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Medical University of Bialystok


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Shewanella putrefaciens

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_country: Hong Kong

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: HKU


ncbi_country: China: Fujian

ncbi_isolation_source: paddy soil

ncbi_organism_name: Methylophilus sp. YYY-1

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;s__Candidatus Collierbacteria bacterium RIFOXYD2_FULL_45_13


ncbi_country: South Korea

ncbi_isolation_source: Imported chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Sphingopyxis terrae

ncbi_submitter: Guangdong University of Petrochemical Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: oysters obtained from Mexico City seafood market (La Viga)

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Centro de Investigacion Cientifica y de Educacion Superior de Ensenada Baja California


ncbi_country: China: Shanghai

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Shanghai ocean university


ncbi_country: United Kingdom: University of Warwick School of Life Science

ncbi_isolation_source: laboratory

ncbi_submitter: University of Warwick


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Flavobacterium cheniae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Streptomyces sp. NPDC007094

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangdong Province

ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_submitter: south china agricultural university


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus faecalis


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0393R

ncbi_submitter: Broad Institute


ncbi_organism_name: Vibrio sp. YT-15

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Eubacteriaceae bacterium


ncbi_organism_name: Citrobacter koseri


ncbi_country: China: Sichuang

ncbi_isolation_source: ground pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Marinifilum fragile JCM 15579

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Marinilabiliales;f__Marinifilaceae;g__Marinifilum;s__Marinifilum fragile;x__Marinifilum fragile JCM 15579


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Streptomyces sp. JHA19

ncbi_submitter: Kyushu University


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: 324 Brook ST.


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Department of Laboratory Medicine


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Pennsylvania State University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Afipia sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: China

ncbi_isolation_source: pig farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Wujia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pandoraea sp.

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Paenibacillus sp. FSL H3-0310

ncbi_submitter: Penn State


ncbi_country: Greece: Nafpaktos; Managouli

ncbi_isolation_source: Marine Water

ncbi_organism_name: Vibrio sp. RW

ncbi_strain_identifiers: RW

ncbi_submitter: Agricultural University of Athens


ncbi_country: USA:Florida; Summerland Key

ncbi_organism_name: Micromonospora sp. WMMD882

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Tift Co.; GA

ncbi_isolation_source: thrips from peanut blossoms

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: China: Fangchenggang City; Guangxi Province

ncbi_isolation_source: stool

ncbi_submitter: SCAU


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: SCOPE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_country: China: Qinghai

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: South China Agricultural University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Schaalia turicensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV271

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Case Western Reserve University


ncbi_country: Sweden

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudonocardia xinjiangensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Memphis; Tennessee

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: influent municipal wastewater

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: Holdemanella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories - DBL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 55


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: EPFL


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_isolate: AOP32_A1_surf _bin _7

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_strain_identifiers: AOP32_A1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Serratia sarumanii

ncbi_submitter: University of Calgary


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Burkholderia sp. 22PA0099

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Purdue University


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces griseoviridis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_country: USA: San Leandro; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Victivallales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_assembly_name: freshwater MAG --- LinL4_bin-0250

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Kroppenstedtia eburnea

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: OPTIMISTICC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran

ncbi_isolation_source: soil

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Green Biotech Co.


ncbi_country: USA: Seattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Shimia thalassica

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC089915


ncbi_country: Germany: Hamburg

ncbi_isolation_source: water rainwater-tap Botanic Garden Hamburg

ncbi_organism_name: Janthinobacterium sp. HH106

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: Hot spring

ncbi_organism_name: Anoxybacillus thermarum

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: China Jiliang University


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus pneumoniae SPNA45

ncbi_submitter: Wellcome Trust Sanger Institute


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Argentina

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp H-3

ncbi_strain_identifiers: Hp H-3

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: California

ncbi_isolation_source: Fermented olive; commercial processor

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of California, Davis


ncbi_country: Russia: Nizhniy Novgorod

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: N.F. Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Leyella stercorea

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: uncultured Microbacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Pakistan: Sheikh Zaid Hospital; Lahore

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rehman Medical Institute


ncbi_organism_name: Streptomyces rimosus subsp. rimosus

ncbi_strain_identifiers: NRRL B-8076

ncbi_submitter: University of Illinois


ncbi_organism_name: Helicobacter hepaticus


ncbi_assembly_name: freshwater MAG --- VK3_bin-0841

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Turicibacter sanguinis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Germany: Lusatia; lignite mining district

ncbi_isolation_source: water

ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Durham; NC

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Duke University


ncbi_country: USA: Minnesota

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonas sp. CAH-1

ncbi_submitter: Univeristy of Minnesota


ncbi_country: Portugal: Cabril

ncbi_isolation_source: soil

ncbi_organism_name: Achromobacter sp. UMC46

ncbi_submitter: University of Minho


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research