ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Clostridium fessum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: EPFL


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: South Korea: Uijeongbu

ncbi_isolation_source: soil

ncbi_organism_name: Microvirga splendida

ncbi_refseq_category: reference genome

ncbi_submitter: Seoul Women's University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Pseudoramibacter faecis

ncbi_submitter: 1. State Key Laboratory of Microbial Technology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0541

ncbi_submitter: Broad Institute


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Guangdong Ocean University


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Ascidiaceihabitans sp.

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: China: Yangjiang

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: South China Agricultural University


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Juntendo University


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: SAR116 cluster bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Finland

ncbi_isolation_source: milk

ncbi_strain_identifiers: Saari 7

ncbi_submitter: University of Helsinki


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Research Institute of Physico-Chemical Medicine


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Brevinematales bacterium NS

ncbi_strain_identifiers: NS

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_organism_name: Candidatus Bipolaricaulis anaerobius

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;s__Candidatus Bipolaricaulis anaerobius

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;s__Candidatus Bipolaricaulis anaerobius


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_isolation_source: seashore sediment

ncbi_organism_name: Aliikangiella sp. G2MR2-5

ncbi_submitter: Kyonggi university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Limnobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Stenotrophomonas indicatrix

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: USA: TN

ncbi_isolation_source: ground turkey

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Staphylococcus aureus M1407

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Streptomyces sp. NPDC018960

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: Strip loin

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Hawaii

ncbi_isolation_source: Eggs

ncbi_organism_name: Kosakonia sp. S58

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_isolation_source: Culture contaminant

ncbi_organism_name: Achromobacter piechaudii

ncbi_submitter: GHENT UNIVERSITY


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Turkey: Mersin

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Scientific Research Fund of Hatay Mustafa Kemal University


ncbi_country: South Korea: Seoul

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: Yonsei University


ncbi_assembly_name: freshwater MAG --- AM-2014-D1_bin-528

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: chicken (Gallus gallus)

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 13-1


ncbi_organism_name: Phaeodactylibacter sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Mycolicibacterium brumae

ncbi_submitter: San Raffaele Scientific Institute


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. BCW_6466

ncbi_submitter: University of California at Davis


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Hong Kong

ncbi_isolation_source: biotrickling reactor

ncbi_organism_name: Ectopseudomonas mendocina DLHK

ncbi_strain_identifiers: DLHK

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Streptomyces sp. NPDC026666

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_country: Germany: Freising

ncbi_isolation_source: see mibc paper

ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Rahnella inusitata

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Taibaiella chishuiensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Limosilactobacillus balticus

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Oman: Somail Ophiolite

ncbi_isolation_source: Water sample from WAB71 Well

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Subsurface soil (10 cm depth) from the side of a busy road

ncbi_organism_name: Tsukamurella tyrosinosolvens

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Bacteroides caccae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut content

ncbi_organism_name: Kosakonia cowanii


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Corynebacterium variabile

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Gluconobacter japonicus

ncbi_submitter: Teagasc


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: Netherlands

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Yersinia pestis 2504

ncbi_submitter: Beijing Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 2504


ncbi_country: Norway

ncbi_isolation_source: salmon processing facility

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: McMaster University


ncbi_assembly_name: freshwater MAG --- Loc090721-8-6m_bin-0752

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Biopsy

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Queensland


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Malawi: Blantyre

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: China: Jianghan Plain; Hubei

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis YBT-1518

ncbi_submitter: State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis YBT-1518


ncbi_country: China: Nanjing

ncbi_isolation_source: Laboratory-scale bioreactor

ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: NanJing University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Ben Gurion University of the Negev


ncbi_organism_name: Lutisporaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bifidobacterium asteroides


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_organism_name: Terriglobales bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: South Africa

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Streptomyces sp. NPDC005444

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Sphingorhabdus sp. Alg231_15

ncbi_isolate: Sphingorhabdus sp. Alg231_15

ncbi_organism_name: Sphingorhabdus sp. Alg231-15

ncbi_strain_identifiers: Sphingorhabdus sp. Alg231_15

ncbi_submitter: Elham Karimi


ncbi_country: Germany

ncbi_isolation_source: poultry meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Veterinary Research Institute Brno


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0050

ncbi_submitter: Broad Institute


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_country: Denmark

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Clostridium sp. CAG:452

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human

ncbi_submitter: University Hospital Munster


ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Microbacterium aurantiacum

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium binae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Universidad Austral de Chile


ncbi_country: Ecuador: Quito

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Central del Ecuador


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: China

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0241


ncbi_organism_name: Dactylosporangium sp. NPDC005572

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_level: Chromosome

ncbi_isolation_source: blood

ncbi_submitter: PulseNet Next Generation Subtyping Methods Unit


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: Germany: Botanical Garden of Tubingen

ncbi_isolation_source: soil

ncbi_organism_name: Alicyclobacillus cycloheptanicus

ncbi_strain_identifiers: SCH

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Porphyromonadaceae bacterium UBA7180


ncbi_country: South Korea: Gyeonggi

ncbi_isolation_source: Cheonggukjang

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: National Institute of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_isolation_source: Gastric antrum

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: SC


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Auburn University


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: China: Hangzhou

ncbi_isolation_source: anal swab

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Australia: Perth

ncbi_isolation_source: Mango tissue

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Malaga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Flavobacterium panici

ncbi_submitter: INSTITUT PASTEUR


gtdb_type_species_of_genus: t

ncbi_country: China: Yunnan

ncbi_isolation_source: lake

ncbi_organism_name: Cognataquiflexum aquatile

ncbi_submitter: Shandong University


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudomonas canadensis

ncbi_submitter: Macquarie University


ncbi_organism_name: Stenotrophomonas sp. SMYL11

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Ningxia

ncbi_isolation_source: bark

ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: ISS SRV-K

ncbi_submitter: University of Alabama in Huntsville


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Columbia University Medical Center


ncbi_country: Ireland

ncbi_isolation_source: Drain

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Kitasatospora sp. NPDC056181

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Peptoniphilus rachelemmaiella EMRHCC_23

ncbi_organism_name: Peptoniphilus rachelemmaiella

ncbi_submitter: UNIVERSITY OF EAST ANGLIA, UK


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antwerp


ncbi_organism_name: uncultured Caldithrix sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Lentibacter algarum

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_assembly_name: freshwater MAG --- Ki2-D1_bin-1435

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient sediment

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: sputum

ncbi_submitter: China Agriculture University


ncbi_isolation_source: SWAB FROM SKIN TISSUE

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna-i.z.s.l.e.r.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Salinisphaera sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Pseudomonas sp. LAMO17WK12:I9

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Microbacteriaceae bacterium UBA1613

ncbi_submitter: University of Queensland


ncbi_country: Chile: Santiago

ncbi_isolation_source: nasal mucosa

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Andres Bello University


ncbi_country: India

ncbi_submitter: National Centre for Cell Science, Pune

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775

ncbi_type_material_designation: assembly designated as neotype


ncbi_country: USA: Pennsylvania; Scalp Level

ncbi_isolation_source: biofilm

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Romania

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;x__unclassified Candidatus Methylacidiphilales;s__Candidatus Methylacidiphilales bacterium


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-5805

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Italy: Florence

ncbi_isolation_source: bronchoaspiration material

ncbi_submitter: University of Trento


ncbi_country: United Kingdom

ncbi_organism_name: Pandoraea apista

ncbi_submitter: Public Health England


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: Rind of surface ripened cheese

ncbi_organism_name: Staphylococcus equorum subsp. linens

ncbi_submitter: Modernising Medical Microbiology


ncbi_isolation_source: soil

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of South Africa


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan

ncbi_isolation_source: Plant

ncbi_organism_name: Novosphingobium sp. JCM 18896

ncbi_submitter: Nakdonggang National Institute of Biological Resource


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_country: China

ncbi_isolation_source: seawater surrounding coral Acropora digitifera under thermal stress

ncbi_organism_name: Marivita sp.

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Duncaniella muris


ncbi_country: Antarctica

ncbi_organism_name: Corynebacterium antarcticum

ncbi_submitter: Masaryk University


ncbi_country: Switzerland

ncbi_isolation_source: EFB infected honey bee larva

ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: Norway: Bergen

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: Norway 2

ncbi_submitter: Uppsala University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces


ncbi_isolation_source: sheep gut metagenome


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA19101

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Streptomyces longhuiensis

ncbi_submitter: Hunan Institute of Agricultural Biotechnology


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium RIFCSPLOWO2_12_FULL_53_10


ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Bacteriology, Basic Medicine, Kyushu University Faculty of Medical Sciences


ncbi_isolation_source: COPD airways

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CAU Kiel


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Emergencia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Candidatus Limihabitans stercoravium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limihabitans;s__Candidatus Limihabitans stercoravium


ncbi_country: Germany

ncbi_isolation_source: wound

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Jason Brunt, Arnoud H M van Vliet, Sandra C Stringer, Brigitte G Dorner, Martin B Dorner, Andrew T Carter, Michael W Peck


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sanguinis SK1059

ncbi_submitter: Baylor College of Medicine


ncbi_country: Tanzania: Dar es Salaam

ncbi_isolation_source: outpatient

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Bergen


ncbi_organism_name: Halomonas sp. GFAJ-1

ncbi_strain_identifiers: ATCC BAA-2256

ncbi_submitter: Le Phung


ncbi_country: Poland

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: INTA


ncbi_country: USA: California

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia albertii

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Salmonella enterica

ncbi_submitter: wenzhou Medical university


ncbi_organism_name: Bacillus cereus group sp. Bc248

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bc248


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella michiganensis


ncbi_country: Paraguay

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: NRRL BD-145

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-3-2-15-C-LB1

ncbi_submitter: Arkin Lab


ncbi_country: Italy: Venice Lagoon

ncbi_isolation_source: seawater

ncbi_organism_name: Acinetobacter venetianus VE-C3

ncbi_submitter: University of Florence


ncbi_country: USA: St. Louis

ncbi_isolation_source: Urinary tract

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Duodenibacillus sp.


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Washington


ncbi_country: Spain: Asturias

ncbi_organism_name: Yaniella sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: salt crust

ncbi_organism_name: Cyanobacteria bacterium SW_4_48_29

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium SW_4_48_29


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA

ncbi_isolation_source: Sink Drain

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rhodococcus yunnanensis NBRC 103083

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_organism_name: Methyloligellaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_organism_name: Porphyromonas endodontalis

ncbi_submitter: NEB


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Quanzhou Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: College of Life Science and Technology, Tarim University


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Candidatus Microsaccharimonas sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Microsaccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Microsaccharimonas;x__unclassified Candidatus Microsaccharimonas;s__Candidatus Microsaccharimonas sp.


ncbi_assembly_name: freshwater MAG --- KT_bin-2017

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_submitter: Bicetre hospital


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Florida


ncbi_organism_name: Dysosmobacter sp.


ncbi_organism_name: Waltera sp.


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_country: USA: California; Modesto

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Greenland: Nuuk fjord

ncbi_isolation_source: marine sediment after 17 days of incubation with protein additions

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Vienna


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Ardenticatenia bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Tunisia

ncbi_isolation_source: Isolated from Tunisian Rigouta Cheese

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Rouen University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Varibaculum cambriense

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Hubei

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Italy: Florence

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Bifidobacterium mongoliense

ncbi_submitter: University of Parma


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: beef

ncbi_submitter: Nankai University


ncbi_organism_name: Pseudomonas sp. P7779

ncbi_submitter: Wageningen University & Research


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: Italy

ncbi_isolation_source: environment

ncbi_submitter: FDA


ncbi_country: Ireland: Kilkieran Bay

ncbi_organism_name: Streptomyces sp. SM9

ncbi_submitter: University College Cork, Ireland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Huangshaping Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada: London

ncbi_isolation_source: parent strain CV601 collected from dairy manure

ncbi_submitter: Western University


ncbi_country: China

ncbi_isolation_source: sludge sediment from agricultural chemical plant

ncbi_organism_name: Crenobacter caeni

ncbi_submitter: Nanjina Agricultural University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Leptospirales bacterium

ncbi_submitter: SponGES


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Korea

ncbi_isolation_source: Soil; Jeju Island; Republic of Korea

ncbi_organism_name: Niabella soli DSM 19437

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;f__Chitinophagaceae;g__Niabella;s__Niabella soli;x__Niabella soli DSM 19437


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 320

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 1354

ncbi_submitter: University of Calgary


ncbi_organism_name: Actinotignum timonense

ncbi_submitter: Capital Region


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Clinical sample

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-0593

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Schlesneria sp.

ncbi_submitter: BILS


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes communis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Seto Island Sea

ncbi_organism_name: Sulfitobacter sp. S46

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: J.Craig Venter Institute


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Labrador Sea

ncbi_isolation_source: Microcosm inoculated with Labrador Shelf sediment and amended with petroleum hydrocarbons

ncbi_organism_name: Pseudomonas sp.


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus thiooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Clostridium botulinum NCTC 2916

ncbi_strain_identifiers: NCTC 2916

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Borrelia turicatae

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacteriaceae bacterium UBA2603

ncbi_submitter: University of Queensland


ncbi_country: Switzerland

ncbi_organism_name: Campylobacter coli H56

ncbi_submitter: Cornell University


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Japan

ncbi_isolation_source: Infant feces

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Korea University


ncbi_country: China

ncbi_organism_name: Yaniella halotolerans DSM 15476

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Sphingomonas sp. CCH13-B11

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_country: Greece

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: bioMerieux


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Anhui

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: China:Maoming City; Guangdong Province

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: miscellaneous body fluid

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Streptococcus sp. IMAU11619

ncbi_submitter: Key Laboratory of Dairy Biotechnology and engineering


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. MPR-R3B

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Queensland


ncbi_organism_name: Mycoplasma sp. Z473B

ncbi_submitter: Institute of Microbiology


ncbi_country: China: Shantou city; Guangdong province

ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: Nanjing Agricultrure University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Italy

ncbi_isolation_source: BAL

ncbi_submitter: Sapienza University of Rome


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Desulfuromusa sp.

ncbi_submitter: ProBone


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: England

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: University of Alabama at Birmingham


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: South Carolina

ncbi_isolation_source: infected leaf

ncbi_organism_name: Xanthomonas arboricola pv. pruni

ncbi_submitter: Clemson University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Denmark

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Japan:Shiga; Otsu; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Kitasatospora sp. NPDC058060

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_submitter: KU Leuven


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: uncultured Staphylococcaceae bacterium


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhengzhou University


ncbi_organism_name: Phytobacter sp. V69

ncbi_submitter: max planck institute for biology, tuebingen


ncbi_organism_name: Collinsella sp. wc0529

ncbi_submitter: University of Modena and Reggio Emilia


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: GNS Science


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: Harvard University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Enterococcus thailandicus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: USA: Tattnall Co.; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_assembly_name: freshwater MAG --- Day2-6_bin-512

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Candidatus Dormibacteraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy: d__Bacteria;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;x__unclassified Candidatus Dormibacteraceae;s__Candidatus Dormibacteraceae bacterium


ncbi_country: India:New Delhi

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: All India Institute of Medical Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_isolation_source: human gut

ncbi_organism_name: Collinsella aerofaciens


ncbi_country: Spain: Barcelona

ncbi_submitter: Hospital Universitari Vall d'Hebron


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_organism_name: Pseudanabaenales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Aquitalea sp.

ncbi_submitter: EMG


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Synergistales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Guangdong

ncbi_isolation_source: soil

ncbi_organism_name: Nocardioides guangzhouensis

ncbi_submitter: South China University of Technology


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: municipal wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: feces

ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: Vedanta Biosciences, Inc.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: India

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Collinsella sp. LCP21S3_C7

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonadaceae bacterium UBA2620

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Streptomyces sp. NBC_00869

ncbi_submitter: Technical University of Denmark


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Sulfitobacter dubius

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacillus cereus group sp. MYBK163-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK163-2


ncbi_submitter: University of California at Davis


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D10_bin-0821

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Ireland

ncbi_organism_name: Campylobacter coli

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: France

ncbi_isolation_source: Minced meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: Ancylobacter vacuolatus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: seed

ncbi_organism_name: Xanthomonas sontii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Proteus vulgaris


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-92


ncbi_submitter: University of Pittsburgh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus SA5211


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Devosia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Rumen uncultured genome RUG12171

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clostridium sp. AF15-6B

ncbi_submitter: BGI


ncbi_country: USA: Pennsylvania

ncbi_submitter: USDA


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USFDA


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Anaerolineaceae bacterium UBA5229

ncbi_submitter: University of Queensland


ncbi_isolation_source: freshwater

ncbi_organism_name: Shigella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: USA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: CDC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Mexico: Churince; Cuatro Cienegas; Coahuila

ncbi_isolation_source: Sediment top

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Irapuato


ncbi_country: China: Southeast region

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Fujian Center for Disease Control and Prevention, Fuzhou


ncbi_organism_name: Bacillus rhizoplanae

ncbi_submitter: Institut Pasteur


ncbi_country: USA: Lake Washington

ncbi_organism_name: Acidovorax sp. 69

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides fragilis str. S23 R14

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. S23 R14


ncbi_country: Spain: Asturias

ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sedimenticola selenatireducens

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: Monash University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Universiti Tunku Abdul Rahman


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chifeng Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Streptomyces sp. NPDC088706

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Kuenenia sp.

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__unclassified Candidatus Kuenenia;s__Candidatus Kuenenia sp.


ncbi_organism_name: uncultured Ohtaekwangia sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of Adelaide


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: Arctic Ocean: Southern Knipovich Ridge

ncbi_isolation_source: marine sediment core GS10_PC15; 223 cmbsf

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Tech


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Wenzhou Medical University


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: Japan: Sapporo

ncbi_isolation_source: lab-scale membrane bioreactor

ncbi_organism_name: Candidatus Brocadia sapporoensis

ncbi_submitter: KAUST

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__Candidatus Brocadia sapporoensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__Candidatus Brocadia sapporoensis


ncbi_country: China: Shaanxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_country: South Korea: Pusan

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Spongiibacter thalassae

ncbi_submitter: Keimyung University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: skin; soft tissue; stss

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Actinomyces oris

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_country: China: Shandong

ncbi_isolation_source: Rice flour product

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: China: Jiangxi; Fujian

ncbi_organism_name: Pseudomonas syringae pv. cunninghamiae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. cunninghamiae


ncbi_organism_name: Capnocytophaga leadbetteri

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Patescibacteria group bacterium UBA3530

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA3530


ncbi_isolation_source: gut content

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: sea water

ncbi_organism_name: Urechidicola croceus

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Bacteroidales bacterium 45-6

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium 45-6


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_country: Spain

ncbi_isolation_source: soil

ncbi_organism_name: Neorhizobium tomejilense

ncbi_submitter: Centre for Plant Biotechnology and Genomics UPM-INIA


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_assembly_name: Rumen uncultured genome RUG10279

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Arthrobacter sp. MP_M4

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Minnesota


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: CSIR-Centre for Cellular and Molecular Biology


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: EMG


ncbi_country: Kazakhstan: Nur-Sultan

ncbi_isolation_source: purulent sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: National Center for Biotechnology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Marivita cryptomonadis

ncbi_submitter: Shantou University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG11793

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Dallas TX

ncbi_isolation_source: urine

ncbi_submitter: Santa Clara University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Hong Kong

ncbi_isolation_source: Wound specimen

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: Actinomyces oris

ncbi_submitter: EMG


ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Aurantimicrobium sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: China

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_country: China: Shandong

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Slackia piriformis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Guangdong

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Cambridge; Massachusetts

ncbi_isolation_source: oral cavity

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium oral taxon 955


ncbi_organism_name: Fusobacterium periodonticum D10

ncbi_submitter: Broad Institute


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Yoonia sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. 2010C-4244


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Methyloversatilis universalis EHg5

ncbi_submitter: JGI


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: digestate

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: CAU


ncbi_country: Thailand

ncbi_isolation_source: Farm

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Surface of a polyethylene microplastic particle present in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Roseivivax sp. THAF30

ncbi_submitter: Uni Bielefeld


ncbi_organism_name: Mycolicibacter senuensis

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Finland: Olkiluoto

ncbi_isolation_source: groundwater

ncbi_organism_name: Weeksellaceae bacterium

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_isolation_source: intestinal content

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: ChinaCDC


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Queensland


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_assembly_name: freshwater MAG --- LJ_bin-1780

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: United Arab Emirates University


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Marques de Valdecilla University Hospital


ncbi_organism_name: Spiribacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Milan


ncbi_organism_name: Christensenellales bacterium


ncbi_country: Taiwan: Taichung

ncbi_isolation_source: estuarine plant

ncbi_organism_name: Priestia megaterium

ncbi_submitter: National Chung Hsing University


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Rifle; Colorado

ncbi_isolation_source: sediment at 5m depth

ncbi_organism_name: Chloroflexi bacterium CSP1-4

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium CSP1-4


ncbi_country: Poland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albert


ncbi_isolation_source: Columbia River; salinty 0

ncbi_organism_name: Chitinophagaceae bacterium UBA3430

ncbi_submitter: University of Queensland


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_organism_name: Candidatus Leptovillus affinis

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Leptovillus;s__Candidatus Leptovillus affinis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Leptovillus;s__Candidatus Leptovillus affinis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_submitter: National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_isolation_source: grape leaf

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: University of Padova, CRIBI


ncbi_country: USA: Rio Grande under the international bridge between Brownsville and Matamoros

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: San Diego State University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: BGI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Modestobacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_assembly_name: Rumen uncultured genome RUG10937

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_country: China: Beijing

ncbi_isolation_source: soil

ncbi_organism_name: Catellatospora methionotrophica

ncbi_strain_identifiers: IMSNU 22006

ncbi_submitter: Sichuan Industrial Institute of Anotibioctics


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_isolate: metabat2_coassembly_bwa.518 MAG

ncbi_strain_identifiers: metabat2_coassembly_bwa.518 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Ornithomonoglobus;s__Candidatus Ornithomonoglobus intestinigallinarum


ncbi_country: United Kingdom

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Sudan

ncbi_organism_name: Xanthomonas campestris pv. euphorbiae

ncbi_strain_identifiers: NCPPB 1828

ncbi_submitter: University of Exeter


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_organism_name: Ligilactobacillus equi

ncbi_submitter: Key Laboratory of Dairy Biotechnology and engineering


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Ocean University of China


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Acidithiobacillus caldus

ncbi_submitter: The University of Auckland


ncbi_organism_name: Sphingomonas paucimobilis

ncbi_submitter: UNESP-FCAV


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: DOE JGI


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: China University of Geosciences Beijing

ncbi_isolation_source: sediment

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: EPFL


ncbi_country: France: Paris

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Brazil:Distrito Federal; Brasilia

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China

ncbi_isolation_source: gut microbiota

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Streptomyces sp. P5-A9

ncbi_submitter: Technical University of Denmark


ncbi_country: Italy: Reggio Calabria

ncbi_isolation_source: Abcess

ncbi_organism_name: Dietzia sp. B32

ncbi_submitter: UFMG


ncbi_organism_name: Candidatus Hydrothermia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Hydrothermota;c__Candidatus Hydrothermia;x__unclassified Candidatus Hydrothermia;s__Candidatus Hydrothermia bacterium


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Gordonia jinhuaensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Rheinheimera tangshanensis


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China: Guangdong

ncbi_isolation_source: cloacal swab

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Washington; Pullman

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_isolation_source: sputum from CF patient

ncbi_organism_name: Burkholderia arboris

ncbi_submitter: University of Michigan