ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Streptomyces albus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_level: Contig

ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 648904 3-6


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas nicosulfuronedens

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Granulicatella sp.

ncbi_submitter: EMG


ncbi_country: Sweden: Orebro

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


gtdb_representative: t

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: China: Zhejiang

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_assembly_level: Chromosome

ncbi_country: Germany: Berlin

ncbi_isolation_source: vagina

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Nannocystales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_country: USA: Boston; MA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M0465

ncbi_submitter: Broad Institute


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Houston

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_submitter: UK Health Security Agency


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Perth

ncbi_submitter: University of Western Australia


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDADE FEDERAL DE CIENCIAS DA SAUDE DE PORTO ALEGRE


ncbi_country: Sweden

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_organism_name: Plantactinospora sp. KLBMP9567

ncbi_submitter: Jiangsu Normal University


ncbi_country: USA: FL

ncbi_isolation_source: Calf

ncbi_submitter: US Food and Drug Administration


ncbi_isolate: metabat2_XCR1_HET_6748_bwa.117 MAG

ncbi_organism_name: Candidatus Scatomonas merdigallinarum

ncbi_strain_identifiers: metabat2_XCR1_HET_6748_bwa.117 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scatomonas;s__Candidatus Scatomonas merdigallinarum


ncbi_country: China: Anhui

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterobacter cloacae complex sp.6722794

ncbi_submitter: Tel Aviv Sourasky Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp.6722794


ncbi_isolation_source: farm environment

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: South Africa

ncbi_isolation_source: skin; tongue

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Candidatus Avisuccinivibrio pullicola

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Rhodocyclaceae bacterium


ncbi_assembly_name: IMG-taxon 2675903132 annotated assembly

ncbi_organism_name: Lentzea jiangxiensis

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Luzhou

ncbi_isolation_source: no

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Pseudoclavibacter sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Italy: Florence

ncbi_isolation_source: pharyngeal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Greece: Athens

ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Saganbacteria bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__Candidatus Saganbacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9061

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: ND

ncbi_isolation_source: waste water


gtdb_type_species_of_genus: t

ncbi_isolation_source: Clone isolated from the evolution experiment described in Ketola et al. 2013 (doi: 10.1111/evo.12148)

ncbi_submitter: UNIVERSITY OF JYVASKYLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens ATCC 13880


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Fimivivens sp.

ncbi_submitter: Land Crab Microbiome Project Submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivivens;x__unclassified Candidatus Fimivivens;s__Candidatus Fimivivens sp.


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Sichuan

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Korea

ncbi_isolation_source: Kochujang

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: fermented milk

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Agrobacterium sp. NPDC090273

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Pseudomonas cedrina

ncbi_submitter: Ataturk Universitesi


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. CA-106110

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Levilactobacillus tangyuanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bartonella sp. AA23NXGY

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Planctomyces sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China

ncbi_isolation_source: 20 years wild ginseng rhizosphere soil

ncbi_organism_name: Variovorax sp. J31P207

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;x__unclassified Candidatus Krumholzibacteriota;s__Candidatus Krumholzibacteriota bacterium


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG210

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: Urethral discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNIFESP - CRT DST/Aids SP


ncbi_assembly_name: Burkholderia udeis LMG 27134

ncbi_isolation_source: soil

ncbi_organism_name: Caballeronia udeis

ncbi_submitter: LM-UGent


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ghana

ncbi_isolation_source: fish

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: cold seep

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: uncultured bacterium


ncbi_country: Taiwan

ncbi_isolation_source: yan-tsai-shin (Fermented broccoli stems)

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA2513


ncbi_organism_name: Lachnospiraceae bacterium 29-91

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Granulicatella sp.


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Madelia


ncbi_country: China: Qingdao

ncbi_isolation_source: sea water

ncbi_organism_name: Vibrio profundi

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Methylobacterium marchantiae

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bosea sp. BE271

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. BE271


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: PMEN

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Propionibacteriaceae bacterium UBA6214

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Switzerland

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: CHUV-UNIL


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agriculture University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces levis

ncbi_submitter: Hunan Institute of Microbiology


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: India

ncbi_submitter: Christian Medical College


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Ruminococcus sp.


ncbi_country: Thailand: Nakhon Pathom

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_country: China: Nanjing

ncbi_isolation_source: urethral discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_country: Slovenia: pig farm Ihan

ncbi_isolation_source: feces from large intestine

ncbi_organism_name: Prevotella sp. P2-180

ncbi_submitter: University of Ljubljana


ncbi_isolation_source: Kefir

ncbi_organism_name: Lactobacillus kefiranofaciens

ncbi_submitter: Tianjin University of Science and Technology


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A3

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Coprobacillus sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Germany

ncbi_organism_name: Escherichia coli TW06591

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDK8D54P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China

ncbi_isolation_source: algal material [ENVO:01001189]

ncbi_organism_name: Rhodopirellula sp. P2

ncbi_submitter: Shandong University


ncbi_organism_name: Acinetobacter baumannii ATCC 17978

ncbi_submitter: Zhejiang Tianke High Technology Development Co.Ltd.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii ATCC 17978


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_country: China: Jiaxing

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jiaxing Center for Disease Control and Prevention


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG41

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Mesorhizobium sp.

ncbi_strain_identifiers: labscale reactor_MAG41

ncbi_submitter: TU Delft


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_isolation_source: microbes were collected at JL-Dive100-S03

ncbi_organism_name: Emcibacter sp.

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: Malaysia: Kuala Pangsun village

ncbi_isolation_source: fecal sample

ncbi_organism_name: Ruminococcus sp. OA3

ncbi_submitter: New York University


ncbi_country: Lebanon

ncbi_organism_name: Shigella sp. SHS-6

ncbi_submitter: Lebanese American University


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Paracoccus sp. J39

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. J39


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Technion-israel institute of technology


ncbi_organism_name: Holdemanella biformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Guangzhou

ncbi_isolation_source: bioaerosols from school playground

ncbi_organism_name: Desemzia incerta

ncbi_submitter: Southern Medical University


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar kurstaki;x__Bacillus thuringiensis serovar kurstaki str. YBT-1520


ncbi_assembly_name: Rumen uncultured genome RUG12600

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Corynebacterium aurimucosum

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Faecalicoccus pleomorphus


ncbi_organism_name: Oscillospiraceae bacterium LTW-04

ncbi_submitter: Sanming University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: Nine Mile Q

ncbi_submitter: Vircell S.L.


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Aalborg University


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Spoiled lager beer

ncbi_organism_name: Loigolactobacillus backii

ncbi_submitter: Northeast Agricultural University


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Boston; MA; USA

ncbi_organism_name: Staphylococcus aureus M1310

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Faecivicinus avistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Faecivicinus;s__Candidatus Faecivicinus avistercoris


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bartonella apis

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerostipes hadrus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Clinical Isolate

ncbi_organism_name: Parvimonas micra

ncbi_submitter: US Food and Drug Administration


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_country: Brazil: Niteroi

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Santa Clara University


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus albus

ncbi_strain_identifiers: CWTS 10

ncbi_submitter: Uka Tarsadia University, Bardoli, India


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Italy: Bolzano

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-178


ncbi_organism_name: Candidatus Olsenella pullistercoris

ncbi_submitter: Quadram Institutte


ncbi_country: USA

ncbi_organism_name: Leptospira inadai serovar Lyme str. 10

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira inadai;x__Leptospira inadai serovar Lyme;x__Leptospira inadai serovar Lyme str. 10


ncbi_country: Argentina

ncbi_isolation_source: beef

ncbi_strain_identifiers: STEC 816b

ncbi_submitter: Shanghai Customs


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Malawi

ncbi_isolation_source: sludge

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Yale School of Public Health


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Porticoccus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: IA

ncbi_isolation_source: spleen

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Melioribacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_assembly_name: JCC

ncbi_organism_name: Clostridium saudiense

ncbi_strain_identifiers: JCC

ncbi_submitter: URMITE


ncbi_organism_name: Agathobacter rectalis


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: burned soil

ncbi_organism_name: Devosia sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Italy: Lecco

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus avium

ncbi_submitter: University of Bern


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis OFXR-2

ncbi_submitter: Broad Institute


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Enterobacter bugandensis

ncbi_strain_identifiers: FDAARGOS 1427

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Poland

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: Perineum

ncbi_submitter: unverisity medical center groningen


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Antarctica: Mackay Glacier regions; Mount Seuss

ncbi_isolation_source: mineral soil

ncbi_organism_name: Parachlamydiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Actinomyces sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: biochar-amended oxisol soil plot 1

ncbi_organism_name: Lysobacter sp.

ncbi_submitter: Arizona State University


ncbi_organism_name: Candidatus Cryosericum sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;x__unclassified Candidatus Cryosericum;s__Candidatus Cryosericum sp.


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Iowa State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: EMG


ncbi_country: India: Arunachal Pradesh

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Oxalobacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Jiangsu

ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_organism_name: Kitasatospora purpeofusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Faecalibacterium sp. CAG:74


ncbi_country: Japan

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S035

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S035


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Cronobacter dublinensis subsp. dublinensis

ncbi_submitter: University of Wyoming


ncbi_organism_name: Methylotenera sp.


ncbi_country: Belgium: Comblain-au-Pont

ncbi_isolation_source: cave

ncbi_organism_name: Streptomyces lunaelactis

ncbi_submitter: Center for Protein Engineering


ncbi_organism_name: Phocaeicola massiliensis


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus FVRH6129

ncbi_submitter: Broad Institute


ncbi_country: USA: Madison; Wisconsin

ncbi_isolation_source: nasal lavage fluid

ncbi_organism_name: Rothia sp. RSM407

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. RSM407


ncbi_organism_name: Teredinibacter turnerae

ncbi_submitter: Johns Hopkins Applied Physics Laboratory


ncbi_country: China: China University of Geosciences Beijing

ncbi_isolation_source: sediment

ncbi_organism_name: Xanthomonas sp.

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Streptomyces chartreusis


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 97

ncbi_submitter: SC


ncbi_assembly_name: SOAPdenovo

ncbi_country: China

ncbi_organism_name: Enterobacter hormaechei YT3

ncbi_submitter: BGI Research Institution


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2700988703 annotated assembly

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Myroides;s__Myroides odoratimimus;sb__Myroides odoratimimus subsp. xuanwuensis


ncbi_isolation_source: human skin

ncbi_organism_name: Alloiococcus otitis

ncbi_submitter: NIH/NHGRI


ncbi_country: China: Jing Zi Habour; Weihai

ncbi_organism_name: Aliiglaciecola sp. M165

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Yersinia pestis PY-94

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Bombella sp. ESL0380

ncbi_submitter: University of Lausanne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: Switzerland: Berne

ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Streptomyces sp. NPDC058861

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Italy: Foggia

ncbi_isolation_source: wine

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Consiglio per la Ricerca e la Sperimentazione in Agricoltura


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptomyces sp. NPDC020780


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: ARO, The Volcani Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Sphingobacterium composti

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Scybalosoma faecavium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scybalosoma;s__Candidatus Scybalosoma faecavium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG11343

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Spain: Galicia

ncbi_isolation_source: Colon adenocarcinoma

ncbi_organism_name: Parvimonas micra

ncbi_submitter: Biomedical research institute (INIBIC)


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: New Jersey

ncbi_isolation_source: Dental plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Brazil: Piracicaba; Sao Paulo

ncbi_isolation_source: host

ncbi_organism_name: Maize bushy stunt phytoplasma

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrI (Aster yellows group);s__Maize bushy stunt phytoplasma


ncbi_organism_name: Pseudomonas juntendi


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom: Scotland; Edinburgh; Colton Hill

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_00078

ncbi_submitter: Technical University of Denmark


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Streptomyces sp. RTd22

ncbi_submitter: Faculdade de Ciencias Farmaceuticas de Ribeirao Preto - University of Sao Paulo


ncbi_assembly_name: Rumen uncultured genome RUG10066

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Brazil: Billings Reservoir; Sao Bernardo do Campo; SP

ncbi_isolation_source: freshwater

ncbi_organism_name: Cylindrospermopsis raciborskii CENA302

ncbi_submitter: CENA/USP


ncbi_organism_name: Williamsia muralis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium casei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R740;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Guttural pouch lavage

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Agitococcus sp.

ncbi_submitter: University of Calgary


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: MA; Boston

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Broad Institute


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL010130


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: China: Zhenjiang

ncbi_organism_name: Oerskovia flava

ncbi_submitter: Jiangsu University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: New Zealand

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: Brazil

ncbi_isolation_source: Fusarium culture contamination in plate

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Londrina State University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Los Alamos National Lab


ncbi_organism_name: uncultured Sporobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: [Clostridium] innocuum 2959


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Yantai University


ncbi_organism_name: Adlercreutzia wanghongyangiae

ncbi_submitter: State Key Laboratory of Infection Disease Prevention and Control


ncbi_organism_name: Thermoguttaceae bacterium


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Scarlet fever

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NPDC048845

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas sp. CFBP 8772

ncbi_submitter: INRAE


ncbi_organism_name: Acinetobacter chinensis

ncbi_submitter: University of Technology Sydney


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_assembly_name: Salmonella enterica CVM N50435 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: China CDC


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. MPR-R5B

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_submitter: Mahidol University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: the seqafrica consortium


ncbi_country: USA: New York State

ncbi_isolation_source: Raspberries

ncbi_organism_name: Acetobacter okinawensis

ncbi_submitter: Cornell University


ncbi_organism_name: Yersinia alsatica

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Campylobacter sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Ecuador: Babahoyo

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Guayaquil


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: Canada: Quebec

ncbi_submitter: Government of Canada


ncbi_country: Norway

ncbi_isolation_source: discolored amniotic fluid

ncbi_organism_name: Brucella pseudogrignonensis

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 969

ncbi_submitter: USDA-ARS


ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: plant metagenome

ncbi_organism_name: uncultured Methylomonas sp.


ncbi_assembly_name: freshwater MAG --- Umea1_bin-3625

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Oman

ncbi_isolation_source: PL FL

ncbi_submitter: Ministry of Health


ncbi_country: China: Shenzhen

ncbi_organism_name: Fusobacterium varium

ncbi_submitter: BGI


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolate: UBP7 HKST-UBA03

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: bacterium

ncbi_strain_identifiers: UBP7 HKST-UBA03

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Micromonospora sp. CA-244673

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Wyoming


ncbi_organism_name: Serratia nevei

ncbi_submitter: University of the Philippines


ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: Monash University


ncbi_isolate: SPRUCE 368

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 368

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Oribacterium sp. Sow4_G1_1

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bartonella sp. TT67HLJMS

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes inops


ncbi_organism_name: uncultured Nitrospira sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- Loc081215-8m_bin-2886

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Malaysia: Kuala Lumpur

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The National University of Malaysia (UKM)


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Escherichia coli

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Nitrospirota bacterium


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Chongqing

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Winogradskyella sp.


ncbi_country: China: Fangchenggang

ncbi_isolation_source: Anal swab

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangxi Zhuang Autonomous Region Center for Disease Control and Prevention


ncbi_country: Canada: Chicoutimi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Streptomyces achromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: MO

ncbi_isolation_source: Beef Cows

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N60365F

ncbi_submitter: FDA


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Chr. Hansen A/S


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Jilin

ncbi_organism_name: Bifidobacterium apousia

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Lacombe

ncbi_submitter: AAFC


ncbi_country: China: Guizhou; Jiuan

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: Kazakhstan: Almaty

ncbi_isolation_source: purulent-necrotic detritus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Scientific Center for Anti-infectious Drugs (SCAID)


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Lachnotalea sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Candidatus Nanopelagicus sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;x__unclassified Candidatus Nanopelagicus;s__Candidatus Nanopelagicus sp.


ncbi_country: Chile: Bahia de Concepcion

ncbi_isolation_source: Marine sediments from a bay

ncbi_organism_name: Anaerolineales bacterium HSG24

ncbi_submitter: Aarhus University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Institut Pasteur


ncbi_country: India: Assam; Jorhat

ncbi_isolation_source: soil

ncbi_organism_name: Alcaligenes nematophilus

ncbi_submitter: CSIR-North East institute of Science and Technology


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Kenya: Kibera

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_isolation_source: Seawater

ncbi_organism_name: Paracoccus marinus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: EMG


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: BGI


ncbi_country: Canada: Woodslee; Ontario

ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Harbin

ncbi_organism_name: Bacillus sp. T_4

ncbi_submitter: Heilongjiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. T_4


ncbi_country: Peru: Tumbes

ncbi_isolation_source: Hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Programa Nacional de Innovación en Pesca y Acuicultura


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: USA

ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_country: Peru: Lima

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- T7-022_bin-222

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 4 (4-7276109)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 4 (4-7276109)


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Dysgonamonadaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus oralis SK313

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacillus cereus group sp. Bc002

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bc002


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: purulent fluid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Rochester


ncbi_country: Atlantic Ocean: CORK U1383C-Deep at North Pond; Mid-Atlantic Ridge

ncbi_isolation_source: single cells amplified with WGA-X exibiting 488 nm flourescence sorted from subsurface crustal fluid containing redox-sensor green

ncbi_organism_name: Simkania negevensis

ncbi_submitter: Bigelow Laboratory For Ocean Sciences


ncbi_organism_name: Halorhodospira sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Lincoln


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paenarthrobacter ureafaciens

ncbi_submitter: The University of Burdwan


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Aneurinibacillus migulanus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: cold seep

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Enterococcus sp. DIV2462a

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Mailhella sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: Comoros

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes communis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_country: USA: New Mexico

ncbi_organism_name: Curtobacterium aetherium

ncbi_submitter: NASA Florida Space Grant Consortium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Synechococcus sp. SB0672_bin_10

ncbi_submitter: University of Queensland


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: LMU Munich


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Aeromonas media

ncbi_submitter: University of Georgia


ncbi_organism_name: Streptomyces sp. NPDC013178

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Desulfocucumaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: freshwater anammox upflow column Reactor

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: KAUST


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3955-1

ncbi_submitter: Broad Institute


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: water

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1192


ncbi_country: USA

ncbi_isolation_source: Lake water

ncbi_organism_name: Pseudomonas sp. 02C 26

ncbi_submitter: Bowling Green State University


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Desulfobulbaceae bacterium UBA2213


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Switzerland

ncbi_isolation_source: whey

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: pig skin (A); aerobic

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Weill Cornell Medicine


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_organism_name: Iodobacter fluviatilis

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: China: Zhejiang Province

ncbi_isolation_source: cerebro-spinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium OF30-10pH10A

ncbi_submitter: BGI-Shenzhen


ncbi_country: Malaysia: Tioman Island; Pahang

ncbi_isolation_source: marine sediment

ncbi_organism_name: Blastococcus sp. KM273128

ncbi_submitter: University of Malaya


ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella variicola


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Taipei Medical University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: United Kingdom: Norwich laboratory

ncbi_organism_name: Streptomyces sp. M2

ncbi_submitter: University of East Anglia


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Jilin university


ncbi_isolation_source: Plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of California


ncbi_country: Japan: Ehime

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: terrestrial

ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Queensland


ncbi_country: Kenya

ncbi_organism_name: Porphyromonadaceae bacterium UBA6443


ncbi_submitter: University of South Florida


ncbi_country: Serbia

ncbi_isolation_source: wound

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Malaysia

ncbi_isolation_source: Gastric Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_organism_name: Blautia producta

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Nanosyncoccaceae bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;x__unclassified Candidatus Nanosyncoccaceae;s__Candidatus Nanosyncoccaceae bacterium


ncbi_submitter: South China Agriculture University


ncbi_organism_name: Anaerostipes sp. AF04-45

ncbi_submitter: BGI


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Passaging

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Japan

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Toho university


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 1

ncbi_organism_name: Staphylococcus saccharolyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: University of Bern


ncbi_isolation_source: dioxin contaminated soil

ncbi_organism_name: Ectopseudomonas mendocina

ncbi_strain_identifiers: NSYSU

ncbi_submitter: University of Missouri - Columbia


ncbi_country: USA: Chicago

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_submitter: Amity University, Noida


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Pakistan

ncbi_isolation_source: Perirectal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_organism_name: Streptomyces sp. NBC_01180

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Shanghai

ncbi_isolation_source: activated sludge

ncbi_organism_name: Comamonas sp. NyZ500

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Sphingobium sp. WTD-1

ncbi_submitter: Anhui Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Romboutsia timonensis

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: not available: to be reported later

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_country: Algeria: M sila

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pacificispira sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Segatella copri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Arthrobacter luteolus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Hospital Sirio-Libanes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_isolate: SPRUCE 583

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 583

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Chile

ncbi_isolation_source: smoked turkey ham

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Algeria: Tizi Ouzou

ncbi_isolation_source: hospital effleunts

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Laboratoire de sante publique du Quebec


ncbi_country: Iceland: Seltjarnarnes

ncbi_isolation_source: seawater

ncbi_organism_name: Oceanospirillales bacterium

ncbi_submitter: Matis ohf


ncbi_isolation_source: human gut

ncbi_organism_name: Collinsella sp. AF02-46-1

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Canada: Ontario

ncbi_isolation_source: Animal - Chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA19983126


ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: licheniformis

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 13ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium RBG_13_41_10


ncbi_country: Kenya

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Nanyang Technological University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_organism_name: Turneriella sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Antarctica: Prydz Bay

ncbi_isolation_source: sea ice algal assemblage

ncbi_organism_name: Colwellia demingiae

ncbi_strain_identifiers: ACAM 459

ncbi_submitter: University of Tasmania


ncbi_assembly_name: freshwater MAG --- A3_bin-117

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Bacteroides] pectinophilus


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_isolation_source: water

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Commensalibacter sp.


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_isolate: NIPQY

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria ivanovii

ncbi_submitter: CSIRO


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_country: China: Beijing

ncbi_isolation_source: throat swab

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Affiliated Hospital of Academy of Military Medical Science


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Sudan

ncbi_genome_representation: partial

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Khartoum


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_submitter: China Agriculture University


ncbi_country: South Korea: Bokryong

ncbi_isolation_source: grean algae

ncbi_organism_name: Marivirga arenosa

ncbi_submitter: Korea research  institute of Bioscience  and Biotechnology


ncbi_country: South Korea

ncbi_isolation_source: Sputum


ncbi_country: Germany: Tuebingen

ncbi_isolation_source: Nasal cavity

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Eberhard Karls Universitaet Tuebingen


ncbi_organism_name: Streptomyces sp. ID03-2B

ncbi_submitter: Oregon State University


ncbi_country: USA: Brigham and Women s Hospital

ncbi_isolation_source: genital

ncbi_organism_name: Pseudomonas aeruginosa BWH036

ncbi_submitter: Broad Institute


ncbi_country: Germany: Bremen

ncbi_isolation_source: continuous bioreactor NO_5109 inoculated with denitrifying sludge is constantly fed with nitric oxide and formate

ncbi_organism_name: Siculibacillus sp.

ncbi_submitter: Max-Planck for Marine Microbiology


ncbi_country: Hungary

ncbi_isolation_source: caecum domestic rabbit

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: USA: Tatoosh Island; Washington

ncbi_isolation_source: kelp blade whole tissue extract

ncbi_organism_name: Phycisphaera sp.

ncbi_submitter: University of Washington-Seattle


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AM22-11AC

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: shrimp farm

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease swab

ncbi_organism_name: Dermabacter hominis

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MS

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR3842


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella boydii

ncbi_submitter: JCVI


ncbi_country: France

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Paratyphi B str. SARA56


ncbi_country: China: Nanjing

ncbi_isolation_source: Laboratory-scale bioreactor

ncbi_organism_name: Aequorivita sp.

ncbi_submitter: NanJing University


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France: canal Crillon

ncbi_isolation_source: fresh water

ncbi_organism_name: Dickeya oryzae

ncbi_submitter: Sorbonne University


ncbi_country: Brazil

ncbi_isolation_source: root of Oryza sativa

ncbi_organism_name: Herbaspirillum seropedicae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Escherichia coli B185

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: India

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: USA:Highgate Springs; VT

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetaceae bacterium UBA6894

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alcanivorax sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteriovorax sp.


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Taiwan: Taichung City

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Leucobacter zeae

ncbi_submitter: Faculty of Chemical Engineering, University of Porto


ncbi_organism_name: Paenibacillus sp. MB22_1

ncbi_submitter: USDA-ARS


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University of British Columbia


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Vibrio lamellibrachiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.