ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_assembly_level: Contig

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Micromonospora vinacea

ncbi_submitter: Technical University of Denmark


ncbi_country: Atlantic Ocean

ncbi_isolation_source: hexactinellid isolated at 868 m depth

ncbi_organism_name: Olleya marilimosa

ncbi_submitter: University of Bristol


ncbi_country: USA: Salt Lake City

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: stool

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Cleveland Clinic


gtdb_representative: t

ncbi_organism_name: uncultured Hyphomicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: Stellenbosch University


ncbi_organism_name: Enterococcus durans

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Corynebacterium hindlerae

ncbi_submitter: WRAIR-Africa (Kenya)


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Rummeliibacillus stabekisii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC014791


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-05117

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Roseburia inulinivorans


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Amycolatopsis sp. MEPSY49

ncbi_submitter: Jiangsu Normal University


ncbi_organism_name: Flavonifractor plautii


ncbi_submitter: Icahn School of Medicine at Mount Sinai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Bacillota bacterium RTP21359st1_B11_RTP21359_211015


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Paraclostridium sordellii


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: anammox granular sludge freshwater column reactor

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: KAUST


ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2675903033 annotated assembly

ncbi_organism_name: Algoriella xinjiangensis

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: cattle

ncbi_submitter: United State Department of Agriculture


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020047955

ncbi_submitter: Broad Institute


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: zhejiang University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Russia

ncbi_organism_name: Leptospira alexanderi

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_organism_name: Kiloniella sp. GXU_MW_B19

ncbi_submitter: Guangxi University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Blautia sp. MCC269

ncbi_submitter: University College Cork


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp. JL2

ncbi_submitter: China Agricultural University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Argentina: Hurlingham; Buenos Aires

ncbi_isolation_source: soybean nodules

ncbi_organism_name: Bradyrhizobium japonicum

ncbi_submitter: INDEAR


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: WuHan

ncbi_isolation_source: retail market

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: breast milk

ncbi_organism_name: Acidipropionibacterium timonense

ncbi_submitter: URMITE


ncbi_country: Egypt

ncbi_isolation_source: Raw milk cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: NY

ncbi_isolation_source: cilantro

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: France

ncbi_isolation_source: Minced meat

ncbi_submitter: Anses


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Cyanobacteriota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: UNLLIII

ncbi_country: United Kingdom

ncbi_isolate: UNLLIII

ncbi_isolation_source: pig

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: UNLLIII

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: California

ncbi_isolation_source: lab mouse blood

ncbi_organism_name: Borrelia parkeri

ncbi_strain_identifiers: SLO

ncbi_submitter: Baylor College of Medicine


ncbi_country: Japan

ncbi_isolation_source: closed abscess

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Toho university


ncbi_submitter: Swiss Institute of Bioinformatics - Vital-IT group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus ST228


ncbi_country: Mexico: Mexico city

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Mexicano del Seguro Social CMN SigloXXI


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_isolation_source: stool

ncbi_submitter: 10k Salmonella genomes project

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: ballast tank

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Shandong university


ncbi_country: USA

ncbi_isolation_source: Invasive


ncbi_country: Belgium

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Aarhus University


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Distal colon

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina: Buenos Aires

ncbi_submitter: IMPaM(UBA/CONICET)-Facultad de Medicina UBA


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: China: Beijing

ncbi_isolation_source: Surgical infection

ncbi_submitter: China Agricultural University


ncbi_country: China

ncbi_organism_name: Xanthomonas citri pv. glycines

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. glycines

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Hungary

ncbi_submitter: Enviroinvest Corp.


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella sp. WCHKl090539

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: South Africa: Tau Tona mine in Carletonville district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Dehalobacter sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Micrococcus porci

ncbi_submitter: University of Liege


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: MD

ncbi_organism_name: Shigella boydii

ncbi_strain_identifiers: DMB SH136

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_submitter: CLUE-TERRA


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Sungiibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Sungiibacteriota;s__Candidatus Sungiibacteriota bacterium


ncbi_country: China: Guangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Pantoea cypripedii


ncbi_country: USA: WA

ncbi_organism_name: Vibrio parahaemolyticus


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDK8D56P

ncbi_submitter: South China Agricultural University


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium malmoense

ncbi_submitter: JCVI


ncbi_country: Norway

ncbi_isolation_source: pea protein pellet

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Planococcus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: SD

ncbi_isolation_source: calf

ncbi_organism_name: Escherichia coli DEC8C

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: Limosilactobacillus reuteri subsp. kinnaridis

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_organism_name: Streptomyces sp. NPDC059718

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Brevibacillus sp. 179-C8.2 HS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: National Jewish Health


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Chinese Academy of Sciences, Institute of Microbiology


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas putida


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Microbiology and Infectious Diseases, Nara Medical University


ncbi_country: China: Qinghai; Qinghai lake

ncbi_isolation_source: soil from salt lake

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: Rainer Borriss's shared submissions


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Shanghai

ncbi_isolation_source: pig manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Succinivibrio sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: Pseudomonas sp. EA_35y_Pfl1_P108

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Roseibium sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Bacteroides sp. D2

ncbi_submitter: Stanford University


ncbi_isolation_source: Homo sapiens

ncbi_submitter: U.S. Food and Drug Administration


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Switzerland

ncbi_isolation_source: milk products

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Brigham Young University


ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Hungatella sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Dysgonamonadaceae bacterium


ncbi_country: Pakistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cardiff University


ncbi_country: Germany:Bad Malente

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_organism_name: Mangrovibacter phragmitis

ncbi_submitter: Academia Sinica


ncbi_isolation_source: endosphere

ncbi_organism_name: uncultured Legionella sp.

ncbi_submitter: NIOO KNAW


ncbi_isolation_source: human blood

ncbi_submitter: Toho University


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Mahidol University


ncbi_assembly_level: Chromosome

ncbi_isolate: type-f

ncbi_organism_name: Haemophilus influenzae

ncbi_strain_identifiers: type-f

ncbi_submitter: NIAID


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC058625

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: South Korea: Lake Seo; Suwon; Gyeonggi

ncbi_organism_name: Microcystis sp. MC19

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Acinetobacter sp. BD54

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: University of Ottawa


ncbi_isolation_source: plaque-purified isolate from stock culture

ncbi_organism_name: Chlamydia muridarum str. Nigg

ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia muridarum;x__Chlamydia muridarum str. Nigg


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Thomasclavelia ramosa


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Sphingomonadaceae bacterium Delta

ncbi_strain_identifiers: Delta

ncbi_submitter: University of Trento


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Candidatus Arcticimaribacter sp.

ncbi_submitter: Yantai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Arcticimaribacter;x__unclassified Candidatus Arcticimaribacter;s__Candidatus Arcticimaribacter sp.


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Kenya

ncbi_organism_name: Alphaproteobacteria bacterium UBA6324

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Aquimarina sp. strain Aq135

ncbi_isolation_source: seawater

ncbi_organism_name: Aquimarina aquimarini

ncbi_submitter: iBB-IST


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_isolation_source: Choana

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef product

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Pakistan: Islamabad

ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: Thompson Rivers University


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0304777.9

ncbi_submitter: IGS


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_country: Spain: Asturias

ncbi_organism_name: Pseudolactococcus plantarum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: oral swab

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: King's College London


ncbi_country: China: Shanghai

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: France

ncbi_submitter: CHU de Bicetre


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alcaligenes sp. GCM10023179

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Ningbo University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_strain_identifiers: E. coli JCM:5491

ncbi_submitter: Department of Food and Nutrition, Hakodate junior college


ncbi_organism_name: Coraliomargaritaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: icddr,b


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: uncultured Phycisphaera sp.


ncbi_submitter: University of Florida


ncbi_assembly_name: Rumen uncultured genome RUG10469

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG109

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_assembly_name: freshwater MAG --- Umea3_bin-4133

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriaceae bacterium UBA4464

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA/ARS/WRRC/PSM


ncbi_isolation_source: Chicken Breast

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_country: USA: Oregon; Netarts Bay

ncbi_isolation_source: Shellfish hatchery tank

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Oregon State University


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient7 sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People Hospital


ncbi_organism_name: Providencia stuartii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: ICMR-National Institute of Occupational Health


ncbi_country: USA

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human gut

ncbi_organism_name: Enterococcus avium

ncbi_submitter: EMG


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Peptoniphilus lacrimalis


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: COPD W8a

ncbi_submitter: Chengdu University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Uganda

ncbi_organism_name: Mycolicibacterium conceptionense

ncbi_submitter: JCVI


ncbi_country: Poland: Warszawa

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: National Medicines Institute


ncbi_assembly_name: Rumen uncultured genome RUG12049

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: uncultured Atopobium sp.


ncbi_assembly_name: IMG-taxon 2671180118 annotated assembly

ncbi_organism_name: Paraburkholderia megapolitana

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Clostridioides difficile CD127

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: USA: MD

ncbi_isolation_source: stool

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: marine metagenome


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F92125

ncbi_submitter: Broad Institute


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Vibrio cholerae HCUF01


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Trueperaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: University College Dublin


ncbi_country: USA: Memphis; TN

ncbi_isolation_source: stool sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Ectothiorhodospiraceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tahi Moana Above plume background

ncbi_organism_name: Marinobacter salarius

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_country: Kenya: Lwak

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Caseous material

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_country: Bangladesh: Mathbaria

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_assembly_name: IMG-taxon 2588254304 annotated assembly

ncbi_organism_name: Ferrimonas marina

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Staphylococcaceae bacterium UBA6286

ncbi_submitter: University of Queensland


ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CN20


ncbi_assembly_name: Salmonella enterica subsp. enterica strain 100TC3

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. SL254


ncbi_country: Japan: Tokyo

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium nitroreducens

ncbi_submitter: University of Minnesota


ncbi_assembly_name: freshwater MAG --- Loc080925-4m_bin-0407

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Roseiflexaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Blood culture

ncbi_organism_name: Bordetella hinzii

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG796

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Jinhua

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: Dialister sp.


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: China: Jinan

ncbi_isolation_source: lab

ncbi_organism_name: Streptomyces clavuligerus

ncbi_submitter: Shandong First Medical University


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Methylorubrum extorquens PA1

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Wisconsin-Madison and Utah State University


ncbi_assembly_name: uncultured Luminiphilus sp. SW04_Bin2

ncbi_isolation_source: seawater

ncbi_submitter: iBB-IST


ncbi_organism_name: Janthinobacterium sp. CAN_S1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Paenalcaligenes hominis

ncbi_strain_identifiers: microbial

ncbi_submitter: California Department of Public Health


ncbi_country: Russia

ncbi_isolation_source: oilfield

ncbi_organism_name: Geobacillus uzenensis

ncbi_strain_identifiers: BGSC 92A1

ncbi_submitter: University of Pretoria


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stony Brook University


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Escherichia coli

ncbi_submitter: Haikou People's Hospital


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Parascardovia denticolens

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Streptomyces chrestomyceticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Teagasc


ncbi_submitter: Universite de Limoges


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France: Durance River

ncbi_isolation_source: fresh river water

ncbi_organism_name: Dickeya zeae

ncbi_submitter: Sorbonne University


ncbi_organism_name: Vibrio tarriae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Rhabdaerophilum sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli FRIK1985

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Lentisphaerales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Klebsiella pneumoniae 160_1080

ncbi_submitter: JCVI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Microcoleus sp. w1-18aA5

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Streptomyces sp. NPDC051051

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Methylopumilus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Finland

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Acinetobacter faecalis

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Pulmuone Institute of Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus thermotolerans

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Rochester

ncbi_isolation_source: interior clove tissue

ncbi_organism_name: Agrobacterium fabrum

ncbi_submitter: Rochester Institute of Technology


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Chicago


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Methylocystis sp.

ncbi_submitter: South China Agricultural University


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Wenzhou Medical University


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maine


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae 540_1460

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Gordonia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Rumen uncultured genome RUG11637

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Romania: Targoviste

ncbi_isolation_source: Enviromental

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: China: Qinyuan City; Guangdong Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: SouthChina Agriculture University


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Kamakura Women's University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: China: Hubei

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_country: India

ncbi_isolation_source: intestinal tissue

ncbi_submitter: Christian Medical College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: national health research institutes


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_strain_identifiers: CatLush

ncbi_submitter: IBCH RAN


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: South Korea: Ulsan

ncbi_isolation_source: peat bog

ncbi_organism_name: Methylocystis sp. MJC1

ncbi_submitter: Korea Advanced Institute of Science and Technology


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus COAS6044

ncbi_submitter: Broad Institute


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Agrobacterium rubi

ncbi_submitter: Oregon State University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_submitter: Peking University People's Hospital


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Ottawa; Ontario

ncbi_isolation_source: root-nodule

ncbi_organism_name: Bradyrhizobium ontarionense

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Dialister invisus


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_strain_identifiers: LT2 KO STM1182

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Pakistan: Vehari; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. VH_4

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Gemmobacter sp.

ncbi_submitter: University of Waterloo


ncbi_country: Russia: Kalmykia; Lagansky District

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute 'Microbe'


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MIT


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Thauera sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Qatar: Doha

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Sidra Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universidad de los Andes


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: USA

ncbi_isolation_source: Wound/Abscess

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Romboutsia ilealis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG14237

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_isolation_source: River

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Bacillus sp. FSL R9-6406

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R9-6406


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_country: Atlantic Ocean

ncbi_isolation_source: hydrothermal fluid

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Henriciella sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Limosilactobacillus reuteri subsp. murium

ncbi_submitter: Department of Food Science and Technology, Univ. Nebraska Lincoln


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Colombia: Bogota

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Pseudomonas aeruginosa PA14

ncbi_submitter: Technical university of Denmark


ncbi_country: Antarctica: Mackay Glacier regions; Flatiron

ncbi_isolation_source: mineral soil

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: South Korea: Chungcheongnam-do

ncbi_submitter: UNIST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis


ncbi_isolation_source: unknown

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_organism_name: Nonomuraea africana

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab cheek

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_organism_name: Streptomyces sp. JV180

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Nonomuraea sp. NPDC049637

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil: Goias;Unai

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Embrapa Genetic Resources and Biotechnology


ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_assembly_name: IMG-taxon 2634166279 annotated assembly

ncbi_organism_name: Agrococcus jejuensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: BGI-Shenzhen


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Microtetraspora glauca

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_assembly_name: xylosus

ncbi_isolate: Staphylococcus xylosus ATCC 29971

ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: Staphylococcus xylosus ATCC 29971

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Curtobacterium flaccumfaciens


ncbi_country: Russia: North Ossetia

ncbi_isolation_source: cheese

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Brevundimonas sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China:Qinghai Tibetan Plateau

ncbi_isolation_source: water

ncbi_organism_name: Listeria ivanovii

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Solobacterium moorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: New Mexico

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: Texas Tech University


ncbi_organism_name: Rickettsia endosymbiont of Hedychridium roseum

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: NC

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Blautia faecis


ncbi_organism_name: Salmonella sp. 2020_1400

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Salmonella sp. NW240

ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_organism_name: Scardovia wiggsiae

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. 741265140_PSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Reyranella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Streptomyces sp. NPDC088725

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Alistipes inops


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Enterobacter sp. 342

ncbi_submitter: Zhejiang university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0158

ncbi_submitter: Broad Institute


ncbi_organism_name: Holophagales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: INIA Rayentue


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Pennsylvania


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: Canada: Winnipeg

ncbi_isolation_source: blood

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: LCDC 99A005

ncbi_submitter: national microbiology laboratory


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Antarctica: Anvers Island

ncbi_isolation_source: Beneath sea ice. Antarctic waters off the Palmer Peninsula near the U.S. Palmer Station

ncbi_organism_name: Polaromonas vacuolata

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp. UBA6472

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_strain_identifiers: Bir 128


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: MD

ncbi_organism_name: Bacillus cereus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Kitasatospora sp. NPDC091276

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Poland: Wroclaw

ncbi_isolation_source: throat

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Wroclaw University


ncbi_organism_name: Actinomycetes bacterium


ncbi_organism_name: Chlamydia trachomatis G/SotonG1

ncbi_submitter: Sanger Institute


ncbi_country: USA: Kansas

ncbi_submitter: University of Guelph


ncbi_organism_name: Hymenobacter sp. UYCo722

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_country: Denmark

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_submitter: IST Austria


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal: Ria de Aveiro; Aveiro

ncbi_organism_name: Salinicola sp. RZ23

ncbi_submitter: Universidade de Aveiro


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: not provided

ncbi_organism_name: Segatella oulorum


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: eastern Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. NC02

ncbi_submitter: Providence College


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Chr-Hansen


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: Russia: Yakutia

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Federal Research Center for Animal Husbandry named after Academy Member L.K. Ernst


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_country: Pakistan

ncbi_isolation_source: stool from child

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lurie Children's/Northwestern


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Sulfopaludibacter sp. SbA3

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Sulfopaludibacter;x__unclassified Candidatus Sulfopaludibacter;s__Candidatus Sulfopaludibacter sp. SbA3


ncbi_organism_name: Acidaminococcus timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Hydrotalea sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: tissue

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis str. 3776 D15 iv


ncbi_country: France

ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Henan

ncbi_isolation_source: lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Hangzhou

ncbi_isolation_source: rumen content from lactating cow

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: zhejiang university


ncbi_isolation_source: oil production facility

ncbi_organism_name: Thermoanaerobacter sp.

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: [Clostridium] hylemonae DSM 15053

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: patient

ncbi_organism_name: Acinetobacter johnsonii

ncbi_strain_identifiers: DJ-Red

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: USA: New York

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: AMPLIFY consortium


ncbi_country: China

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_isolation_source: screen

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Germany

ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Kitchen B

ncbi_organism_name: Enterobacter mori


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Australia: Victoria

ncbi_isolation_source: Bile of chicken infected with Spotty Liver Disease

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_organism_name: Corynebacterium sp. KPL1995

ncbi_submitter: Broad Institute


ncbi_organism_name: Methylobacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Acinetobacter sp. 25977_7

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 25977_7


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: USA: Honolulu; HI

ncbi_isolation_source: accessory nidamental gland

ncbi_organism_name: Leisingera sp. ANG-M1

ncbi_submitter: University of Connecticut


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_organism_name: Streptococcus sp. SGI.051

ncbi_submitter: University of Manitoba


ncbi_assembly_name: LM05-00008 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: sputum sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Surface of a polyethylene microplastic particle present in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Microbulbifer sp. THAF38

ncbi_submitter: Uni Bielefeld


ncbi_organism_name: Salmonella sp. SAL04189

ncbi_submitter: Zhejiang university


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Brachybacterium tyrofermentans

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_organism_name: Thalassospira alkalitolerans

ncbi_submitter: Ocean University of China


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: uncultured Devosia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Weimeria sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Weimeria;x__unclassified Candidatus Weimeria;s__Candidatus Weimeria sp.


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Saccharofermentanales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Dialister hominis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Pakistan: Lahore

ncbi_isolation_source: plant root

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Forman Christian College


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: EPFL


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: food

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_country: Antarctica: Herring Island

ncbi_isolation_source: soil

ncbi_organism_name: Paracoccus sp. NBH48

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. NBH48


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: fecal composite

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Academia Sinica


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFOXYD12_FULL_56_24


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Wall biofilm

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Clostridium botulinum V891

ncbi_submitter: National Veterinary Institute (SVA), Sweden


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Neptuniibacter victor

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Ministry of Primary Industries


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Fructobacillus evanidus

ncbi_submitter: ghent university


ncbi_organism_name: Staphylococcus aureus VET0200R

ncbi_submitter: Broad Institute


ncbi_country: Afghanistan

ncbi_isolation_source: stray dog fecal sample

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Universidad Nacional Andres Bello


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Telmatospirillum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-a_bin-256

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Universidad Autonoma del Estado de Morelos


ncbi_organism_name: Proteus sp. G2670

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2670


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Quebec

ncbi_organism_name: Escherichia coli O20:H12

ncbi_submitter: Government of Canada


ncbi_country: Japan: Nagano; Suwa

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: Iran

ncbi_isolation_source: Motal cheese

ncbi_organism_name: Lactiplantibacillus plantarum subsp. plantarum

ncbi_submitter: Copenhagen University


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Saudi Arabia: Makkah

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umm Al-Qura University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CFBP 4953


ncbi_country: China

ncbi_isolation_source: secretion

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_country: South Korea: South sea

ncbi_isolation_source: Blowhole swab

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo AC


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: China: Sichuan

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces tendae

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_country: Norway

ncbi_isolation_source: Tissue from head

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: daily product not specified

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: ANSES


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: Pakistan: Chak Shahzad

ncbi_organism_name: Ochrobactrum sp. 30A/1000/2015

ncbi_submitter: USDA-ARS


ncbi_country: China: Fuyang

ncbi_isolation_source: Baijiu distillery sewage

ncbi_organism_name: Rhizobium cremeum

ncbi_submitter: Anhui Agricultural University


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Portnoybacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;x__unclassified Candidatus Portnoybacteria;s__Candidatus Portnoybacteria bacterium


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Bern


ncbi_organism_name: Enterobacter cloacae complex sp. CDL005

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. CDL005


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Belgium

ncbi_isolation_source: Kombucha

ncbi_organism_name: Gluconobacter sp. R71656

ncbi_submitter: Ghent University


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Duncaniella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Massilia sp. METH4

ncbi_submitter: Arizona State University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Zimbabwe

ncbi_organism_name: Pseudomonas savastanoi pv. glycinea

ncbi_strain_identifiers: ICMP 4402

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. glycinea


ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: human gut

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Borreliella lusitaniae

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Moscow

ncbi_organism_name: Enterococcus faecium 17282

ncbi_submitter: Research Institute for Physical-Chemical Medicine


ncbi_isolate: Fecal samples

ncbi_isolation_source: CEREMI

ncbi_strain_identifiers: Fecal samples


ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri 2005GS061

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Swansea University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: AOP25_B1_coeur _bin _14

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP25_B1_coeur _bin _14

ncbi_submitter: Genoscope


ncbi_organism_name: Lacticaseibacillus salsurae

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: Streptomyces sp. NPDC015350

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC088727


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Centre International de Recherche en Infectiologie


ncbi_organism_name: Paratractidigestivibacter faecalis


ncbi_isolation_source: lake water

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: cold seep

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Morganella sp. (in: enterobacteria)

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Morganella;x__unclassified Morganella (in: enterobacteria);s__Morganella sp. (in: enterobacteria)


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany