ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: East China Normal University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Richmond; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Dialister invisus


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_country: Tanzania

ncbi_isolation_source: nasal swabs from HIV infected patient

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Bergen


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_assembly_level: Complete Genome

ncbi_country: Ghana: Nyankpala site 1

ncbi_isolation_source: Kantong

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_country: USA

ncbi_organism_name: Escherichia coli O145:NM str. 08-4270

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O145:NM;x__Escherichia coli O145:NM str. 08-4270


ncbi_submitter: King Abdulaziz University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Streptomyces sp. NPDC053780

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Yersinia frederiksenii

ncbi_submitter: Nanjing Agriculture University


ncbi_assembly_name: freshwater MAG --- KT5_bin-476

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Psychrobacter namhaensis


ncbi_assembly_name: De novo assembly of KCRI isolate RDK37_44

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Prevotella sp. UBA3713

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli MP020980.2

ncbi_submitter: IGS


ncbi_country: USA: NJ

ncbi_isolation_source: comminuted chicken

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_assembly_name: Salmonella enterica CVM N46852 v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Chicken Breast

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Klebsiella sp. GG_Kp166

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shanghai

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Canada

ncbi_isolation_source: manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Hong Kong

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_assembly_name: IMG-taxon 2681813552 annotated assembly

ncbi_organism_name: Jannaschia aquimarina

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Ear swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_submitter: University of Copenhagen


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Thauera sp. UBA6194

ncbi_submitter: University of Queensland


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1043

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: USA: Rhode Island

ncbi_isolation_source: coastal water

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Nanjing Drum Tower Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Madrid

ncbi_organism_name: Escherichia coli

ncbi_submitter: IRYCIS


ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Flavobacterium hankyongi

ncbi_submitter: Seoul National University


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Thailand: Songklanakarind Hospital; Songkhla

ncbi_isolation_source: Human large intestine

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Portugal: S.Miguel; Azores

ncbi_isolation_source: hot stream water

ncbi_organism_name: Rubrobacter calidifluminis

ncbi_submitter: Center for Neuroscience and Cell Biology


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: bacterium


ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Bacillus cereus group sp. BceL239

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL239


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Anaerococcus obesiensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Enterococcus sp. AZ149

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces globisporus


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Streptomyces sp. NPDC059398


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Hellea sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: Nigeria: Lagos; Takwa Bay

ncbi_isolation_source: shoreline saltwater

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_strain_identifiers: TAK 145

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ GmbH


ncbi_organism_name: Massilia sp.


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Catenuloplanes nepalensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: lichen metagenome

ncbi_organism_name: uncultured Solirubrobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Qinghai

ncbi_isolation_source: sediments

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Raoultella planticola

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Pantoea sp.

ncbi_submitter: EBI


ncbi_country: Denmark

ncbi_isolation_source: rapid sand filter

ncbi_organism_name: Nitrospira sp. CG24D

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Crocosphaera sp.

ncbi_submitter: SCOPE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: snake

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Utrecht University


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. C2751

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Kocuria palustris

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China: Guangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangzhou center for disease control and prevention


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; MPn+N+C amendment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Montana


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Pakistan

ncbi_isolation_source: fecal sample

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: Florida

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Rumen uncultured genome RUG734

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Polaribacter dokdonensis

ncbi_submitter: Cong Sun Research Group


ncbi_country: USA

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: California

ncbi_organism_name: Campylobacter sputorum subsp. bovis

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: annelid root tissue scrapped from turkey femur surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: ProBone


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: China Agricultural University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Singapore

ncbi_isolation_source: air

ncbi_organism_name: Streptomyces sp. SGAir0924

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0042

ncbi_submitter: Broad Institute


ncbi_organism_name: Amycolatopsis mediterranei

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolate: Urine

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: NILS64:B2;O25:H4;STw 131;STp 43;Urine

ncbi_submitter: UMR 1137 IAME


ncbi_country: Italy

ncbi_isolation_source: environmental swab sponge meat facility

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_country: India: Manikaran; Himachal Pradesh

ncbi_isolation_source: water

ncbi_organism_name: Thermus parvatiensis

ncbi_strain_identifiers: RL

ncbi_submitter: University of Delhi


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Hainan

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter sp. YH12134

ncbi_submitter: South China Agricultural University


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: Germany: Altingen; artesian well

ncbi_isolation_source: enrichment culture sampled from a low-nitrate anoxic artesian well

ncbi_organism_name: Thiobacillus denitrificans

ncbi_submitter: University of Tuebingen


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus sp. DE0587

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. DE0587


ncbi_organism_name: Gemmatimonadota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Antarctica

ncbi_isolation_source: chick trachea

ncbi_organism_name: Flavobacterium sp. I-STPP5a

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: China: Hubei

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wuhan CDC


ncbi_organism_name: Buchnera aphidicola (Mindarus keteleerifoliae)

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;s__Candidatus Taylorbacteria bacterium RIFCSPLOWO2_02_FULL_43_11


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Hunan Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_organism_name: Enterococcus sp. DIV0724b

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella sp. Gene22

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Gordonibacter urolithinfaciens


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Aerococcaceae bacterium zg-252

ncbi_submitter: China CDC


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Ignatzschineria indica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Sweden: Oskarshamn

ncbi_isolation_source: Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Oceanicaulis sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Canadian Research Institute for Food Safety

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Poona


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Cologne

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: human gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Leisingera aquaemixtae

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Peptacetobacter sp.

ncbi_submitter: Washington University School of Medicine


ncbi_assembly_level: Chromosome

ncbi_organism_name: Campylobacter jejuni subsp. jejuni 1336

ncbi_submitter: University of Liverpool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 1336


ncbi_country: Spain

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Surrey


ncbi_country: USA

ncbi_isolation_source: Air filter

ncbi_organism_name: Brevibacillus brevis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Cobetia sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Acidaminococcales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Quadram Institute Bioscience


ncbi_assembly_name: Chlorobium sp. AM_0510

ncbi_organism_name: Chlorobi bacterium Chlorobi_1

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobi bacterium Chlorobi_1


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education & Research, Chandigarh


ncbi_isolation_source: anaerobic enrichment of soil with succinate and nitrous oxide

ncbi_organism_name: Stutzerimonas stutzeri DSM 10701

ncbi_submitter: Universitat de les Illes Balears

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;x__Stutzerimonas stutzeri group;x__Stutzerimonas stutzeri subgroup;s__Stutzerimonas stutzeri;x__Stutzerimonas stutzeri DSM 10701


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_submitter: University of Basel


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: China: Harbin

ncbi_isolation_source: soil

ncbi_organism_name: Aquabacterium parvum

ncbi_submitter: Harbin Institute of Technology


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: France

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: 83-year old woman with a hip prosthesis infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LNCC


ncbi_country: Brazil

ncbi_isolation_source: environmental

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


gtdb_type_species_of_genus: t

ncbi_country: Israel

ncbi_organism_name: Amorphus coralli DSM 19760

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: South Korea: Shinnan; Bigeum island

ncbi_isolation_source: soil from farming field

ncbi_organism_name: Altererythrobacter segetis

ncbi_submitter: Institute of Microbial Ecology and Resources


ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Nizhniy Novgorod

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: I.N. Blokhina Research Institute of Epidemiology and Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Agromyces hippuratus


ncbi_country: USA: Boston; MA

ncbi_isolation_source: drainage

ncbi_organism_name: Staphylococcus aureus M0909

ncbi_submitter: Broad Institute


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: unverisity medical center groningen


ncbi_isolation_source: secreta

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Oregon State

ncbi_organism_name: Bacillus sp. HUB-I-004

ncbi_submitter: Heilongjiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. HUB-I-004


ncbi_isolation_source: respiratory


ncbi_organism_name: Porphyrobacter sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_isolation_source: insect (leafhopper)

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: CIRM-BIA 77

ncbi_submitter: Brigham Young University


ncbi_submitter: Universidad del Desarrollo


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sulfurimonas sp.


ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Alistipes onderdonkii


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Streptomyces sp. NPDC059443

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_organism_name: Stenotrophomonas lactitubi


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: alpha proteobacterium HIMB59

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__unclassified Pelagibacteraceae;s__alpha proteobacterium HIMB59


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: UR Kidney ASP

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University


ncbi_country: USA: Colorado

ncbi_organism_name: Streptomyces pseudovenezuelae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Henan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Planococcus maritimus

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Argentina

ncbi_isolation_source: urine

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Caldisericaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Candidatus Fimisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimisoma;x__unclassified Candidatus Fimisoma;s__Candidatus Fimisoma sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Sphingobium sp. CR28

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_isolate: AOP25_F2_surf _bin _1

ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_strain_identifiers: AOP25_F2_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Microbacterium schleiferi

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of La Rioja


ncbi_organism_name: Duodenibacillus massiliensis


ncbi_organism_name: uncultured Chloroflexaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: SPRUCE 673

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_strain_identifiers: SPRUCE 673

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Mycobacterium sp.


ncbi_isolate: SPRUCE 234

ncbi_strain_identifiers: SPRUCE 234


ncbi_assembly_name: freshwater MAG --- Day6-2_bin-209

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: joint fluid

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VIDO Inter-Vac, University of Saskatchewan


ncbi_organism_name: Gaiella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Broad Institute


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Gambia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Australia

ncbi_isolation_source: Unknown

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Nonomuraea sp. NPDC049750

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_organism_name: Idiomarina fontislapidosi

ncbi_strain_identifiers: CECT 5859

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-b_bin-029

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_isolation_source: water collected from the junction between the ocean and a freshwater spring; Jeju Island

ncbi_organism_name: Pseudoprimorskyibacter insulae

ncbi_strain_identifiers: CECT 8871

ncbi_submitter: UVEG


ncbi_organism_name: Campylobacter sp. BCW_6876


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ignatzschineria sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Himachal Pradesh; Pangi

ncbi_isolation_source: Glacial lake sediment

ncbi_organism_name: Iodobacter fluviatilis

ncbi_submitter: CSIR-IHBT PALAMPUR


ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Vibrio parahaemolyticus


ncbi_isolation_source: human gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Halothermothrix sp.


ncbi_organism_name: Gordonibacter pamelaeae

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Desulfovibrionales bacterium GWA2_65_9

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Maryland Baltimore


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Solibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Veillonella sp.


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: USA: Memphis

ncbi_organism_name: Bacillus cereus

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_submitter: Center for Microbial Communities


ncbi_country: Italy

ncbi_isolation_source: salami paste production

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Spongiibacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Portugal: Tropical Botanical Garden of Lisbon

ncbi_isolation_source: cycad coralloid root

ncbi_organism_name: Nostocales cyanobacterium LEGE 12452

ncbi_submitter: CIIMAR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;x__unclassified Nostocales;s__Nostocales cyanobacterium LEGE 12452


ncbi_country: Chile: Santiago

ncbi_organism_name: Escherichia coli

ncbi_submitter: Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H34245

ncbi_submitter: Broad Institute


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1398


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: New Zealand: Queenstown

ncbi_isolation_source: Diseased bee frame

ncbi_organism_name: Paenibacillus larvae subsp. larvae

ncbi_submitter: University of Canterbury


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gaetbulibacter jejuensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Northeast Forestry University


ncbi_country: United Kingdom

ncbi_isolation_source: seawater

ncbi_organism_name: Lentibacter algarum

ncbi_submitter: Ocean university of China


ncbi_organism_name: Streptomyces bungoensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Russia: Yessentuki

ncbi_isolation_source: subsurface water

ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: subacute conjunctivitis

ncbi_organism_name: Moraxella lacunata

ncbi_strain_identifiers: CCUG 4441

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Salmonella sp. 741265054_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Brevundimonas diminuta


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Sanya people's hospital


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_strain_identifiers: FTCR 52

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus atrophaeus subsp. globigii

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus atrophaeus;sb__Bacillus atrophaeus subsp. globigii


ncbi_organism_name: Falsigemmobacter intermedius

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Aminicenantales bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;x__unclassified Candidatus Aminicenantales;s__Candidatus Aminicenantales bacterium


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Soil

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: FRIEDRICH-LOEFFLER-INSTITUT (FLI) Institute for Bacterial Infections and Zoonoses (IBIZ)


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Microbacterium sp. YY-04

ncbi_submitter: Beijing Technology and Business University


ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Granulicella sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Xanthomonas sp. WCS2018Noco2-28

ncbi_submitter: Utrecht University


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Bombilactobacillus mellifer

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli


ncbi_country: Japan

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Chaiwopu Lake

ncbi_isolation_source: lake sediment

ncbi_organism_name: Paucihalobacter ruber

ncbi_submitter: State key laboratory of microbial technology


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of California-Riverside


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: lake water


ncbi_organism_name: uncultured Alloprevotella sp.


ncbi_organism_name: Prochlorococcus marinus str. MIT 9515

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Prochlorococcaceae;g__Prochlorococcus;s__Prochlorococcus marinus;x__Prochlorococcus marinus str. MIT 9515


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_submitter: University of Massachusetts Amherst


ncbi_isolation_source: groundwater

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: South Korea: Incheon Sinseon Reservoir

ncbi_organism_name: Brevibacterium sp. BRM-1

ncbi_submitter: BAERYEO INNOVATION


ncbi_country: Canada: Quebec City

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Poland

ncbi_isolation_source: artisanal sauerkraut

ncbi_organism_name: Levilactobacillus parabrevis

ncbi_strain_identifiers: CIRM-BIA 2229

ncbi_submitter: Brigham Young University


ncbi_country: Morocco: Legzira

ncbi_isolation_source: Shore seawater

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: University of Cambridge


ncbi_country: Peru

ncbi_organism_name: Escherichia coli DEC14C

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Peking

ncbi_isolation_source: tissue sample

ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: China Medical University


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: INTA


ncbi_submitter: ATCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant microti


ncbi_organism_name: Prevotella nigrescens

ncbi_submitter: EMG


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: AL

ncbi_isolation_source: feces duck

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagaceae bacterium UBA1931

ncbi_submitter: University of Queensland


ncbi_organism_name: Mycobacterium terramassiliense

ncbi_submitter: URMITE


ncbi_country: Estonia: Tartu

ncbi_isolation_source: feces

ncbi_submitter: University of Tartu


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: P043G PI

ncbi_submitter: Imperial College London


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Iran: Khorramabad River; Lorstan

ncbi_isolation_source: river sediment

ncbi_organism_name: Mycobacterium sp. ITM-2016-00316

ncbi_submitter: Institute of Tropical Medicine


ncbi_country: Australia

ncbi_isolation_source: Estuarine sediment from Garrison Point; Georges Hall; Sydney; Australia

ncbi_organism_name: Mycolicibacterium rhodesiae NBB3

ncbi_submitter: JGI


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Verrucomicrobia bacterium UBA6614

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA6614


ncbi_country: Denmark: Slagelse

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Region Zealand


ncbi_organism_name: Campylobacter sp. 2014D-0255

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: Czech Republic

ncbi_isolation_source: sputum

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Nottingham Trent University, UK


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Vibrio sp. V18_P1S4T112

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Arsukibacterium sp. UBA3189

ncbi_submitter: University of Queensland


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: pig gut metagenome


ncbi_country: Germany: Werra

ncbi_isolation_source: Muschelkalk

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_organism_name: Heyndrickxia oleronia

ncbi_strain_identifiers: FW 1

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Kuenenbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kueneniibacteriota;x__unclassified Candidatus Kuenenbacteria;s__Candidatus Kuenenbacteria bacterium


ncbi_country: France

ncbi_isolation_source: patient

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universite Paris Sud


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;s__Candidatus Staskawiczbacteria bacterium RIFOXYC2_FULL_37_17


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: University of Nevada, Reno


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Schaedlerella arabinosiphila


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Turicibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: colon biopsy

ncbi_organism_name: Brachyspira aalborgi

ncbi_submitter: Karolinska Institutet


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: BGI-Shenzhen


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Tehran


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 87_1


ncbi_organism_name: Nitriliruptorales bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis pulmonis


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Lunds Universitet


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea National Institute of Health


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC015680

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Candidatus Coproplasma sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;x__environmental samples;s__uncultured Candidatus Coproplasma sp.


ncbi_isolation_source: chicken caecal content


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia

ncbi_isolation_source: ear

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Melbourne


ncbi_organism_name: Enterococcus sp. LW22

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_submitter: Lund University


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sheep faecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium HGW-Dojkabacteria-1


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Spain: Asturias

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_strain_identifiers: USDA 289

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Bacteroides sp. UBA1773

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: China: The East China Sea

ncbi_isolation_source: oxic surface sediment

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: California; Middletown

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: chicken taco

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Dialister sp. CAG:486


ncbi_assembly_name: IMG-taxon 2599185153 annotated assembly

ncbi_organism_name: Nocardia amikacinitolerans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: USDA-ARS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chungcheongnam-do Agricultural Research and Extension Services


ncbi_country: Taiwan

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albany


ncbi_country: Nigeria

ncbi_isolation_source: Peritoneal fluid

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Cancer Hospital Chinese Academy of Medical Sciences, Shenzhen Center


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan:Fukuoka; Asakura-city; Yanaga

ncbi_isolation_source: water

ncbi_organism_name: Chroococcus sp. FPU101

ncbi_submitter: Research Institute of Green Science and Technology, Shizuoka University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Rumen uncultured genome RUG14532

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Spain: off the coast of Alicante

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: France

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 22843

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: UT

ncbi_isolation_source: cloacal mass

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: Finland: Forssa

ncbi_isolation_source: carrot field

ncbi_organism_name: Candidatus Liberibacter solanacearum

ncbi_submitter: University of Helsinki


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Cepheid


ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_isolation_source: deep sea sediment from the Atlantic Ocean

ncbi_organism_name: Roseivivax marinus

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_isolation_source: freshwater

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0046

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Canada: Ottawa

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Ottawa


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: NCIMB 2158

ncbi_submitter: INRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12155

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: China: Beijing

ncbi_organism_name: Segatella copri

ncbi_submitter: China CDC


ncbi_assembly_name: freshwater MAG --- Loc090721-8-6m_bin-0826

ncbi_organism_name: uncultured Thiotrichales bacterium


ncbi_country: India

ncbi_isolation_source: Rice seed

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: USDA ARS


ncbi_country: Canada: Ontario;Toronto

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Proximal colon


ncbi_submitter: FISABIO - Public Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: BGI Research


ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus sp. AZ064

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_strain_identifiers: B

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Pontitalea aquivivens

ncbi_submitter: Keimyung University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Parafannyhessea sp. LCP21S3_E6

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Streptomyces sp. NPDC059696

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Aliiroseovarius sp. PTFE2010

ncbi_submitter: Shandong University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Aestuariivirga sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- D14_bin-1308

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Thiodictyon sp.

ncbi_submitter: BILS


ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: uncultured Sandaracinaceae bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter sp. MGH 37

ncbi_strain_identifiers: MGH 37

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH 37


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Persephonella sp.

ncbi_submitter: Portland State University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W42304


ncbi_country: China

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_assembly_name: freshwater MAG --- Ki1-2-7m_bin-791

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: coffee beans

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Puia sp.

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolate: YS river water

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA4665


ncbi_isolation_source: not provided

ncbi_organism_name: Streptococcus constellatus


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Center for Bioinformatics


ncbi_isolate: Pectobacterium polaris IPO_3841

ncbi_organism_name: Pectobacterium polaris

ncbi_strain_identifiers: Pectobacterium polaris IPO_3841

ncbi_submitter: UNIVERSITY OF HELSINKI


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. ozaenae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. ozaenae


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: EMG


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Stanleyville


ncbi_country: South Korea

ncbi_isolation_source: Sand

ncbi_organism_name: Paenibacillus arenosi

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Actinomyces sp.


ncbi_country: Ireland

ncbi_organism_name: Yersinia enterocolitica


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bulgaria: Bankya

ncbi_isolation_source: home-made cheese without pasteurization

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_organism_name: Streptococcus thermophilus LMG 18311

ncbi_submitter: Univ. Catholique de Louvain, Belgium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Iowa state University


ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Beer

ncbi_organism_name: Gluconobacter oxydans

ncbi_submitter: Ghent University


ncbi_organism_name: Marispirochaeta sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Rhodococcus baikonurensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_assembly_name: Rumen uncultured genome RUG12542

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Dahi fermented milk product

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Quaid-I-Azam University


ncbi_isolation_source: human blood of bacteremia patient

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of California, Davis


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Texas at Dallas


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: France: Lot; Queyssac

ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: CFBP 7653

ncbi_submitter: INRA


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_organism_name: Candidatus Adiutrix sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Desulfarculia;o__Candidatus Adiutricales;f__Candidatus Adiutricaceae;g__Candidatus Adiutrix;x__unclassified Candidatus Adiutrix;s__Candidatus Adiutrix sp.


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcaceae bacterium UBA4712

ncbi_submitter: University of Queensland


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Rossellomorea aquimaris

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Streptomyces sp. NPDC048155

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: fallen leaves

ncbi_organism_name: Actinokineospora globicatena

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Petrotogaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Eubacterium sp. 14-2

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. 14-2


ncbi_country: Denmark

ncbi_strain_identifiers: ICMP 5702

ncbi_submitter: Lincoln University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pectobacteriaceae;g__Pectobacterium;s__Pectobacterium carotovorum;sb__Pectobacterium carotovorum subsp. carotovorum;x__Pectobacterium carotovorum subsp. carotovorum ICMP 5702


ncbi_organism_name: Klebsiella sp. RHBSTW-00464

ncbi_submitter: The REHAB Consortium


ncbi_country: Peru

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Staphylococcus aureus DAR5850

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sultan Qaboos University


ncbi_organism_name: uncultured Microthrixaceae bacterium


ncbi_organism_name: Sorangium sp. So ce394

ncbi_strain_identifiers: So ce394

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce394


ncbi_organism_name: Microgenomates group bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium


ncbi_organism_name: Isosphaerales bacterium

ncbi_submitter: University of Galway


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Bielefeld University


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Zhejiang University


ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Candidatus Aldehydirespirator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: University of Southern California

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis