ncbi_country: Taiwan: Pingtung County

ncbi_isolation_source: spleen

ncbi_organism_name: Bacillus shihchuchen

ncbi_submitter: Council of Agriculture, Taiwan


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


gtdb_representative: f

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_isolation_source: healthy carrier

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: Germany: Marsberg coppermine Kilianstollen

ncbi_isolation_source: biofilm near Copperflume 1

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Georg-August University Goettingen


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_assembly_level: Scaffold

ncbi_isolation_source: urine

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: URMITE


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A51

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Roseitalea sp.

ncbi_submitter: China University of Geosciences


ncbi_country: Russia: Buryats

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Bangladesh: Mirzapur

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: not provided

ncbi_organism_name: Leptotrichia wadei

ncbi_submitter: EMG


ncbi_assembly_level: Complete Genome

ncbi_country: United Kingdom:Edinburgh

ncbi_isolate: DGE

ncbi_isolation_source: Commercial egg laying facility

ncbi_organism_name: Rickettsiella endosymbiont of Dermanyssus gallinae

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: DGE

ncbi_submitter: Moredun Research Institute


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Yanofskybacteria bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;x__unclassified Candidatus Yanofskybacteria;s__Candidatus Yanofskybacteria bacterium


ncbi_organism_name: Bacteroides uniformis dnLKV2


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: DE

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: Urine Ileal LP

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Blastococcus saxobsidens

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: China: Yunnan

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Qipengyuania thermophila

ncbi_submitter: Xinxiang Medical University


ncbi_country: Antarctica: Prydz Bay

ncbi_isolation_source: sea ice algal assemblage

ncbi_organism_name: Colwellia sp. C1TZA3

ncbi_submitter: University of Tasmania


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Herbaspirillum frisingense

ncbi_submitter: North Carolina State University


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 2591

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Sinorhizobium medicae


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Cobetia amphilecti

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Helicobacter ganmani


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gaiellaceae bacterium


ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Japan

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Novosphingobium sp. KCTC 2891

ncbi_submitter: Nakdonggang National Institute of Biological Resource


ncbi_country: USA: California

ncbi_isolation_source: rectal swab from healthy college student

ncbi_submitter: Santa Clara University


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Alistipes inops


ncbi_isolation_source: fecal samples

ncbi_organism_name: bacterium

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Serratia nevei

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Zhejiang

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Xiaoshan No.3 People's Hospital


gtdb_type_species_of_genus: t

ncbi_organism_name: Halosaccharopolyspora lacisalsi

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanghai

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12254

ncbi_submitter: South China Agricultural University


ncbi_assembly_level: Chromosome

ncbi_isolation_source: gut

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Harbin Meihua Biotechnology Co., LTD


ncbi_organism_name: Streptomyces sp. NPDC005096

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: France: Le Rhue

ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: USDA/ARS/NCAUR


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: University of Debrecen


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes inops


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Bartonella sp. AP21QHHD

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Desulfobulbus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Salmonella sp. C3243

ncbi_submitter: Sichuan University


ncbi_isolate: AOP35_05H_surf _bin _31

ncbi_organism_name: Agrococcus casei

ncbi_strain_identifiers: AOP35_05H_surf _bin _31

ncbi_submitter: Genoscope


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Dallas; TX

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Broad Institute


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Crocinitomix sp.

ncbi_submitter: Stanford University


ncbi_country: India: Kolkata

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Microcoleus sp. Pol14C4

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: BGI


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA724

ncbi_submitter: University of Queensland


ncbi_organism_name: Rhizobium sp. BK049

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Yangzhou University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Streptomyces sp. SAI-133


ncbi_country: Canada: Powell Lake South basin; British Columbia

ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Dalhousie University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 52

ncbi_strain_identifiers: CHS 52

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 52


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA

ncbi_organism_name: Escherichia coli O118:H16 str. 06-3256

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O118:H16;x__Escherichia coli O118:H16 str. 06-3256


ncbi_organism_name: Flavobacteriales bacterium UBA1510


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Kolab Inc


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_country: Vanuatu

ncbi_isolation_source: cutaneous ulcer

ncbi_organism_name: [Haemophilus] ducreyi

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Maricaulis sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG11725

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: IMG-taxon 2593339166 annotated assembly

ncbi_organism_name: Lachnospiraceae bacterium NK3A20

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Reunion

ncbi_isolation_source: Citrus leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: cirad

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Zoogloea ramigera

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces sp. CGMCC 4.1772

ncbi_submitter: Hunan University of Science and Technology


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Roseburia sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Bariatricus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolate: SPRUCE 570

ncbi_organism_name: Smithella sp.

ncbi_strain_identifiers: SPRUCE 570

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: California

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of California San Diego


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: NCTC 8550

ncbi_submitter: KULeuven


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: soil

ncbi_organism_name: Usitatibacter rugosus

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Vagina

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Burkholderia multivorans ATCC BAA-247

ncbi_strain_identifiers: ATCC BAA-247

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;x__Burkholderia cepacia complex;s__Burkholderia multivorans;x__Burkholderia multivorans ATCC BAA-247


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_assembly_name: IMG-taxon 2651870173 annotated assembly

ncbi_organism_name: Phytobacter palmae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Georgia: Keda

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: NCDC Lugar Center


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Lausanne


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Tennessee

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas sp. GM24

ncbi_submitter: Oak Ridge National Lab


ncbi_organism_name: Pseudanabaena sp. UWO311

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Queensland


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA69

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: Kenya Marine And Fisheries Research Institute


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Vienna


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Marinobacterium sediminicola

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Teredinibacter turnerae

ncbi_submitter: Johns Hopkins Applied Physics Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: Shenzhen University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: South Korea: Seoul

ncbi_organism_name: Flaviaesturariibacter aridisoli

ncbi_submitter: Seoul Women's University


ncbi_country: Canada: Quebec

ncbi_isolation_source: dairy milk

ncbi_submitter: McGill University


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Streptomyces sp. NPDC056254

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Methylopumilus sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Metabacillus halosaccharovorans

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces sp. NPDC098085


ncbi_organism_name: Enterococcus pernyi

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Populibacterium corticicola

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Rhizobium sp. 62_C5_N11_2

ncbi_submitter: VIB


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Indian Institute of Technology Roorkee


ncbi_submitter: Fudan University


ncbi_submitter: Umea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_submitter: Teesside University


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Michigan

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Hospital Vall d Hebron (Barcelona)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: uncultured Synergistaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Sulfurimonas sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Georgia

ncbi_isolation_source: Beef

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: National Center for Disease Control and Public Health (NCDC) of Georgia


ncbi_organism_name: Streptomyces coelicolor A3(2)

ncbi_submitter: Sanger Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: Respiratory swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: South Korea

ncbi_organism_name: Bacteroides sp. KFT8

ncbi_submitter: Kyung Hee University


ncbi_assembly_name: freshwater MAG --- AM-2014-D8_bin-0715

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Maribacter caenipelagi

ncbi_strain_identifiers: CECT 8455

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces flaveolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: ileum

ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: University of Minnesota


ncbi_organism_name: Yersinia enterocolitica

ncbi_strain_identifiers: CMP 94

ncbi_submitter: Sassari University


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Amoebophilaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC047880


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: Spain

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus C5453

ncbi_submitter: Broad Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2

ncbi_organism_name: Candidatus Fluviicola riflensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Sichuan

ncbi_isolation_source: patient with infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Paenibacillaceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Japan:Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Bacillus paramobilis

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France: Besancon

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Aquifex aeolicus

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Carleton Univeristy


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: freshwater MAG --- Ki2-D1_bin-0978

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_submitter: University of Milan


ncbi_organism_name: Rhizorhabdus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Iraq

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D9_bin-1150

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_country: USA: Trunk River; Woods Hole; MA

ncbi_isolation_source: Estuary

ncbi_organism_name: Rhodovulum sulfidophilum

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Vienna


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: dtu national food institute


ncbi_country: India:Cochin; Kalamasery retail Market

ncbi_isolation_source: prawn

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Spain: Grande de Gredos

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. es-GGE-1

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Pseudoalteromonas sp. BZA4

ncbi_submitter: Meyer Microbes Lab


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acetobacter indonesiensis

ncbi_submitter: Kinki University


ncbi_organism_name: Spirosomataceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: USDA-ARS


ncbi_country: New Zealand: Manawatu

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter hyointestinalis subsp. hyointestinalis

ncbi_submitter: Molecular Epidemiology and Public Health Laboratory


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Indonesia: Java

ncbi_isolation_source: Ragi-local market

ncbi_organism_name: Streptomyces sp. NRRL F-7442

ncbi_strain_identifiers: NRRL F-7442

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: Air of a duck barn

ncbi_organism_name: Dietzia aerolata

ncbi_submitter: Peking University


ncbi_organism_name: uncultured Rhodohalobacter sp.


ncbi_country: South Korea: Ilsan

ncbi_isolation_source: Korean adult feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Korea Food Research Institute


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Colon

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: South Africa

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium GW2011_GWD1_43_201


ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: DuPont Nutrition and Health


ncbi_organism_name: uncultured Tessaracoccus sp.

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_organism_name: Bacteroides rhinocerotis

ncbi_submitter: Institute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Singapore

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_name: IMG-taxon 2615840624 annotated assembly

ncbi_organism_name: Rhizobium aethiopicum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Streptococcus australis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC086782

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Bacteroides zhangwenhongii

ncbi_submitter: ocean university of china


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Rhizobium sp. SGZ-381

ncbi_submitter: Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Parabacteroides merdae


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Loclat_bin-16243

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Zhuhai

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Jinan University


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Lacticaseibacillus nasuensis JCM 17158

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis;sb__Staphylococcus hominis subsp. hominis;x__Staphylococcus hominis subsp. hominis C80


ncbi_country: Egypt

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar 50:g,z51:-


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Capnocytophaga sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Zurich


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Ear swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: Water column of Rimov Reservoir; Czechia

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: Biology Centre CAS, Institute of Hydrobiology


ncbi_isolation_source: Farm water farm 5

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Brunei


ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S104

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S104


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic

ncbi_isolation_source: Digestive tract

ncbi_organism_name: Pseudoscardovia suis

ncbi_submitter: University of Parma


ncbi_country: China


ncbi_isolation_source: human

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Helicobacter pylori B128

ncbi_submitter: Yonsei University


ncbi_country: USA: DC

ncbi_isolation_source: Abscess

ncbi_organism_name: Acinetobacter nosocomialis


ncbi_organism_name: Helicobacter pylori SA175A

ncbi_submitter: MHH


ncbi_organism_name: Kineosphaera limosa NBRC 100340

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: New Caledonia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira ellisii

ncbi_submitter: Institut Pasteur Montevideo


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Netherlands

ncbi_isolation_source: Alfalfa and radish sprouts

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Radboudumc


ncbi_country: Slovenia: pig farm Ihan

ncbi_isolation_source: feces from large intestine

ncbi_organism_name: Prevotella sp. P4-98

ncbi_submitter: University of Ljubljana


ncbi_country: Hong Kong

ncbi_isolation_source: blood

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: Peru: Junin

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: Health Canada


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Sphingomonas sp. UBA978

ncbi_submitter: University of Queensland


ncbi_country: Colombia

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Mycobacteroides franklinii

ncbi_submitter: San Raffaele Scientific Institute


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: Academia Sinica


ncbi_submitter: United States Department of Agriculture, Agricultural Research Service

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Actinotignum timonense

ncbi_submitter: Loyola University Chicago


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_country: Nigeria

ncbi_isolation_source: Clinical wounds

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Igbinedion University Okada


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: water

ncbi_submitter: King Abdulaziz University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from upstream of wastewater treatment plant

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Pseudomonas sp. B19125

ncbi_submitter: UMR 1300 BIOEPAR


ncbi_organism_name: Xanthomonas arboricola pv. pruni

ncbi_strain_identifiers: NCPPB 416

ncbi_submitter: University of Exeter


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: Avena fatua rhizosphere soil heavy density fraction time point 9 weeks

ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Canada: Ottawa

ncbi_isolation_source: Food starter culture 1

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: University of Ottawa


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Idiomarina sp. UBA4520

ncbi_submitter: University of Queensland


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Denmark

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Statens Serum Institut


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus gallinarum

ncbi_strain_identifiers: P16 C A7

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Longibaculum muris

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Nitratiruptor sp.

ncbi_submitter: Portland State University


ncbi_country: Ireland

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: EMG


ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 236


ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: marine

ncbi_organism_name: Verrucomicrobiales bacterium


ncbi_isolation_source: Throat swab

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Capital Institute of Pediatrics


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter cumulans

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Fermented Okpei-Onitsha

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Nnamdi Azikiwe University


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Singapore Food Agency


ncbi_isolation_source: lake sediment

ncbi_organism_name: Micromonospora craterilacus

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Qipengyuania sp. ASV99

ncbi_submitter: UNIVERSITY OF THE BASQUE COUNTRY UPV/EHU UPV/EHU


ncbi_submitter: Bhagwan Mahavir University


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Plasticicumulans sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Candidatus Scatomorpha merdavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha merdavium


ncbi_organism_name: Bacillus cereus group sp. BceL198

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL198


ncbi_isolation_source: cold seep

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: AAFC


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus pneumoniae GA41301

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Belgium

ncbi_isolation_source: leaves

ncbi_organism_name: Pseudomonas sp. VS40

ncbi_submitter: Hasselt University


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 20

ncbi_strain_identifiers: CHS 20

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 20


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Oman:Jabal Al-Akhdar

ncbi_isolation_source: Leaves

ncbi_organism_name: Sphingomonas sp. LK11

ncbi_submitter: KNU


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Peru

ncbi_organism_name: Vibrio cholerae C6706

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Dialister sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Streptomyces albus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Oklahoma

ncbi_isolation_source: Equine Stall

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_country: Philippines: Marinduque

ncbi_isolation_source: lab-maintained culture

ncbi_organism_name: Hapalosiphonaceae cyanobacterium JJU2

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Zhejiang A and F University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the seqafrica consortium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1645 from squamous cell carcinomas patient MST030

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: University of Queensland


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Sri Lanka

ncbi_isolation_source: neonatal anal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Staphylococcus aureus T16619

ncbi_submitter: Broad Institute


ncbi_isolation_source: Body surface of Pyrosomatidae

ncbi_organism_name: Vibrio chagasii

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_isolation_source: human gut

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: EMG


ncbi_assembly_name: Salmonella enterica CVM N50432 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Ground Beef

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Tissierellales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori UM066

ncbi_submitter: University of Malaya


ncbi_organism_name: Arthrobacter sp. UYCu721

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: CEITEC VETUNI


ncbi_country: South Africa: Prince Msheyeni

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0085


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Phenylobacterium deserti

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Streptomyces antibioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Gelan county; Changshou District; Chongqing city

ncbi_isolation_source: feces

ncbi_organism_name: Tomitella fengzijianii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: France

ncbi_isolation_source: lactic starter (for yoghurt making)

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 67

ncbi_submitter: Brigham Young University


ncbi_assembly_name: freshwater MAG --- AlinenSediments_bin-4729

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: Canada

ncbi_isolation_source: chronic wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: FAFU


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_assembly_name: freshwater MAG --- Day6-4_bin-665

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Vibrio agarivorans

ncbi_strain_identifiers: CECT 5085

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia: Cali

ncbi_isolation_source: subgaleal pus

ncbi_submitter: South American MRSA Consortium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: spontaneous mutant of Mycolicibacterium smegmatis ATCC 19420 with increased resistance to lupulone

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Aberystwyth University


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Texas A&M University


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute of Health


ncbi_organism_name: uncultured Marinilabiliaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Cellular and Intracellular Symbiosis


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Streptomyces hokutonensis

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Escherichia sp. L584-2-1

ncbi_submitter: Yangzhou University


ncbi_organism_name: Dakarella massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Sediment associated with methane hydrate from Krishna Godavari Basin

ncbi_organism_name: Lacrimispora celerecrescens

ncbi_submitter: Agharkar Research Institute


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: LM-UGent


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Clostridium sp. CAG:62_40_43


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: Environment

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: AB

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_country: France: Concarneau bay; Brittany; site Natura 2000 FR5300023

ncbi_isolation_source: Oyster hemolymph

ncbi_organism_name: Pseudoalteromonas ostreae

ncbi_submitter: Universite de Bretagne Occidentale


ncbi_assembly_name: Rumen uncultured genome RUG14278

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG14283

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces enissocaesilis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: food; fresh basil

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 409753-6


ncbi_isolation_source: water

ncbi_organism_name: uncultured Candidatus Kuenenia sp.

ncbi_submitter: CORNELL UNIVERSITY

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__environmental samples;s__uncultured Candidatus Kuenenia sp.


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_submitter: Leiden University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Duke University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_country: China: Poyang Lake; Jiangxi Province

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Yimella sp. cx-51

ncbi_submitter: China CDC


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Nocardioides massiliensis str. GD13

ncbi_organism_name: Nocardioides massiliensis

ncbi_submitter: URMITE


ncbi_country: Greece

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_submitter: University of Toronto


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG6

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_strain_identifiers: labscale reactor_MAG6

ncbi_submitter: TU Delft


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01048

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01048


ncbi_country: Sweden: Gothenborg

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: USA: DC

ncbi_isolation_source: Abscess

ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Nairobi


ncbi_country: Mexico: Sonora; Bahia de Lobos

ncbi_isolation_source: Saline sediment

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Instituto Tecnologico de Sonora


ncbi_country: USA: New York

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonas sp. DCB_BZ

ncbi_submitter: Dominican College of Blauvelt


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ireland: Cork

ncbi_isolation_source: sourdough

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Cork Institute of Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: uncultured Spirochaetia bacterium


ncbi_country: Russia: Centralniy; Kuzbass; Western Siberia

ncbi_isolation_source: leachate from the gold ore mining spoils at an abandoned mining site

ncbi_organism_name: Desulfovibrio sp. TomC

ncbi_strain_identifiers: TomC

ncbi_submitter: Centre Bioengineering RAS


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Kluyvera ascorbata

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: France: Normandy

ncbi_isolation_source: cutaneous/wound

ncbi_submitter: LABEO


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: RWTH Aachen University Hospital


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-0035

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Veillonella magna

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Mycoplasmatales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of California Davis


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_isolation_source: Colon


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Zurich


ncbi_country: China: Jiangsu

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_country: Russia: Moscow

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-0929

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: Canada: BC

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Shigella flexneri

ncbi_submitter: kyungpook national university


ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Caldisericaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: BTEX contaminated soil

ncbi_organism_name: Pseudoxanthomonas spadix BD-a59

ncbi_submitter: Chung-Ang Univ.


ncbi_country: USA: AZ

ncbi_isolation_source: Cattle

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM 22425


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Candidatus Sordicultor fermentans

ncbi_taxonomy: d__Bacteria;p__Atribacterota;c__Atribacteria;o__Atribacterales;f__Candidatus Caldatribacteriaceae;g__Candidatus Sordicultor;s__Candidatus Sordicultor fermentans


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Haliea sp.


ncbi_country: Canada: Richmond Hill

ncbi_isolation_source: Recreational; fresh water Kettle Lake

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_country: Peru: Lima

ncbi_isolation_source: peritoneal fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Naval Research Laboratory


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Acinetobacter sp. CIP-A165

ncbi_submitter: Jilin Agricultural University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC048590

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter cloacae complex sp. SHL017

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. SHL017


ncbi_isolate: SPRUCE 693

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 693

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Heliomicrobium sp.


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured Sulfurimonas sp.


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: uncultured Rhodobacter sp.


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 16d patty soil

ncbi_submitter: Peking university


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Anaerobic digesters

ncbi_submitter: Colorado State University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA6779


ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: Ngtc RS 7

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA

ncbi_isolation_source: air conditioning filter

ncbi_organism_name: Thermoactinomyces intermedius

ncbi_submitter: NCAUR-ARS-USDA


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Microbacterium sediminis

ncbi_submitter: Third Institute of Oceanography,SOA


ncbi_country: China: Guangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Jinan university


ncbi_isolation_source: garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_organism_name: Glaciecola punicea ACAM 611

ncbi_strain_identifiers: ACAM 611

ncbi_submitter: Shandong University


ncbi_isolation_source: low severity burned soil


ncbi_country: USA: NY

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Butyricimonas virosa

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Italy

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Laboratory of Soil Science, Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Granulicella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lactobacillus amylolyticus DSM 11664

ncbi_submitter: Baylor College of Medicine


ncbi_country: China: Wenzhou

ncbi_isolation_source: sediments

ncbi_organism_name: Microbulbifer sp. YPW1

ncbi_submitter: Zhejiang Ocean University


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: The University of Auckland


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: Trueperella pyogenes


ncbi_country: China

ncbi_organism_name: Salinimicrobium terrae DSM 17865

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salinimicrobium;s__Salinimicrobium terrae;x__Salinimicrobium terrae DSM 17865


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Advenella kashmirensis W13003

ncbi_submitter: Tianjin University


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Nanjing

ncbi_isolation_source: soil

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Nanjing Technology University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: Netherlands

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Medical Microbiology, Maastricht University Medical Center


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Gallionellales bacterium GWA2_55_18

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Infection and Immunity, International Institute for Zoonosis Control, Hokkaido University


ncbi_organism_name: Zoogloea sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: University of California, Davis


ncbi_country: China: Changji city; Xinjiang Uygur Autonomous Region

ncbi_organism_name: Companilactobacillus crustorum

ncbi_submitter: Northwest A&F University


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Lu'an People's Hospital


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: blood

ncbi_submitter: wenzhou medical university


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Coprococcus comes

ncbi_submitter: University of Chicago


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Actinomadura fulvescens

ncbi_submitter: University of Wyoming


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis


ncbi_country: Germany

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_strain_identifiers: LT2 KO STM0148

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: USA: Tennessee;Knoxville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Thiopseudomonas sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Czech Republic: Praha

ncbi_isolation_source: Hospital Environment

ncbi_organism_name: Acinetobacter bereziniae NIPH 3

ncbi_strain_identifiers: NIPH 3

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology, Sydney


ncbi_country: USA

ncbi_isolation_source: spacecraft hardware

ncbi_organism_name: Bacillus canaveralius

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: USA: District of Columbia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Anaerolineae bacterium


ncbi_organism_name: Cellulophaga lytica

ncbi_strain_identifiers: DSMZ 7489

ncbi_submitter: Cultivarium


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Atlantibacter subterraneus

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: EMG


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: John Bowman


ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: Universal Sequencing Corporation


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii NIPH 60

ncbi_strain_identifiers: NIPH 60

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii NIPH 60