ncbi_organism_name: Desulfoscipio sp. XC116

ncbi_submitter: Institute of Applied Ecology, Chinese Academy of Sciences


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_assembly_name: freshwater MAG --- Loc080925-5-5m_bin-0723

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: BILS


ncbi_country: Ethiopia

ncbi_isolation_source: food

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_level: Scaffold

ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: England

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


gtdb_representative: t

ncbi_country: China: Nanjing

ncbi_isolate: new MAG-57

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Phycisphaerae bacterium

ncbi_strain_identifiers: new MAG-57

ncbi_submitter: Micoorganism


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Metabacillus idriensis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Massilimicrobiota sp.

ncbi_submitter: Biomin Research Center


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Mycoplasmopsis iners ATCC 19705

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Manitoba;Winnipeg

ncbi_isolation_source: stool

ncbi_submitter: Food and Water Safety Consortium


ncbi_strain_identifiers: mcr mut 6

ncbi_submitter: Paris Saclay


ncbi_organism_name: Blautia sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: Poland

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Hawaii Graf Lab


ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__environmental samples;s__uncultured candidatus Brocadiaceae bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: uncultured Melioribacteraceae bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: Bacillus velezensis M4

ncbi_submitter: Jilin Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- Loc090519-7m_bin-0419

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Freshwater sediment

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Aarhus University


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Monash University


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus LAMC6065

ncbi_submitter: Broad Institute


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus sp. GFQ9D259P-2

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Manitoba

ncbi_isolation_source: Toe

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: wastewater

ncbi_organism_name: Sulfurospirillum sp. hDNRA2

ncbi_submitter: KAIST


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Acinetobacter baumannii 16553_10

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_organism_name: Lactococcus garvieae


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: wound

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Ares Genetics


ncbi_organism_name: Solimonas sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_submitter: University of Helsinki


ncbi_isolation_source: endotracheal aspirate (ETA)

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Zaragoza


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22458;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: bovine milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_organism_name: Rhodococcus rhodochrous ATCC 17895

ncbi_submitter: Delft University of Technology, Department of Biotechnology, Biocatalysis and Organic Chemistry, Julianalaan 136, 2628 BL Delft, the Netherlands


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Harrisoniibacteriota;s__Candidatus Harrisonbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_40_38


ncbi_country: USA: Riverside County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_country: France

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__ant endosymbionts;g__Candidatus Blochmanniella;x__unclassified Candidatus Blochmanniella;s__Blochmannia endosymbiont of Camponotus sp.


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_country: Germany

ncbi_isolation_source: mud

ncbi_organism_name: Clostridium aceticum

ncbi_submitter: Korean Advanced Institute of Science and Technology


ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: United Kingdom

ncbi_organism_name: Streptobacillus moniliformis

ncbi_submitter: Robert Koch Institute


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-1362

ncbi_organism_name: uncultured Schlesneria sp.

ncbi_submitter: BILS


ncbi_submitter: Youjiang Medical University for Nationalities


ncbi_country: Colombia: Barranquilla

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: catheter

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Toho University


gtdb_type_species_of_genus: t

ncbi_organism_name: Pseudobacteriovorax antillogorgiicola

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Australia: Magnetic Island; QLD

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Peru: Junin

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_organism_name: Erysipelotrichales bacterium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Streptomyces sp. NPDC050560

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University of Bern


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Finniella inopinata

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia obeum


ncbi_country: South Korea: Wanju

ncbi_isolation_source: Tomato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: RDA


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-70

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Kineosporiaceae bacterium

ncbi_strain_identifiers: new MAG-70

ncbi_submitter: Micoorganism


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Halopseudomonas aestusnigri

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University (LAU), Byblos campus


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: Groin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Atelocyanobacterium thalassa UBA4158

ncbi_submitter: University of Queensland


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 5486

ncbi_submitter: University of Exeter


ncbi_country: China

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces sp. cmx-4-9

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: Streptacidiphilus jeojiensis

ncbi_submitter: BioPS Co., Ltd.


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Legionella sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: feces

ncbi_organism_name: Ileibacterium valens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medicine Greifswald


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: SC


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: Deep subsurface groundwater

ncbi_organism_name: Orenia metallireducens

ncbi_submitter: University of Illinois, Urbana-Champaign


ncbi_isolation_source: soil

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Streptomyces erythrochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Halomonas organivorans

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Loktanella salsilacus

ncbi_submitter: University of East Anglia


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vels Institute of science technology and advance studies


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Aestuariimicrobium soli

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Pseudomonas sp. SORGH_AS_0199

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nitrospina sp.


ncbi_isolation_source: gut

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_organism_name: Nonomuraea sp. LP-02

ncbi_submitter: Ningbo University


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: Atlantic Ocean

ncbi_isolation_source: Sargassum

ncbi_organism_name: Vibrio sp. D415a

ncbi_submitter: NIOZ Royal Netherlands Institute for Sea Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes MGAS2111

ncbi_submitter: University of Maryland IGS


ncbi_country: China: Guizhou

ncbi_isolation_source: fruit tree rhizosphere soil

ncbi_organism_name: Acinetobacter sp. Ac-14

ncbi_submitter: Nankai University


ncbi_submitter: South China Agricultural University


ncbi_assembly_level: Chromosome

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_organism_name: Coprobacillus sp. AF09-1A

ncbi_submitter: BGI


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: Tanzania

ncbi_isolation_source: Nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA 138T


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_country: Indonesia

ncbi_isolation_source: goat (Capra aegagrus hircus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Kocuria sp.


ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: FIOCRUZ


ncbi_country: Japan: Shizuoka Pref

ncbi_organism_name: Dactylosporangium roseum

ncbi_submitter: INSERM


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Manitoba

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;x__unclassified Actinomyces;s__Actinomyces sp. oral taxon 170;x__Actinomyces sp. oral taxon 170 str. F0386


ncbi_country: USA: MN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: South Korea:Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Nocardioides sp. SYSU DS0663

ncbi_strain_identifiers: SYSU DS0663

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Archangium sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: SC


ncbi_country: USA: South Dakota

ncbi_isolation_source: field isolate

ncbi_organism_name: Brucella abortus 87-2211

ncbi_submitter: Broad Institute


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Tracheal Secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Guangxi University


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium UBA2199


ncbi_country: China: Qingdao

ncbi_isolation_source: plastic debris from sea coast

ncbi_organism_name: Vreelandella venusta

ncbi_strain_identifiers: PBH

ncbi_submitter: The Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: nodule of alfalfa

ncbi_organism_name: Variovorax sp. 553

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual T

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Peptoniphilaceae bacterium

ncbi_submitter: NIH/NHGRI


ncbi_country: Australia: Monaro; NSW

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Japan

ncbi_isolation_source: brewery environment

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Secundilactobacillus;s__Secundilactobacillus paracollinoides;x__Secundilactobacillus paracollinoides DSM 15502 = JCM 11969


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Universiteit Antwerpen


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Enterococcus faecium EnGen0133


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Treponema pallidum

ncbi_strain_identifiers: WiscTPLN

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: Biology Centre CAS


ncbi_country: Australia: NSW

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Poultry

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: United Kingdom102

ncbi_submitter: SC


ncbi_country: Solomon Islands

ncbi_isolation_source: surface of a mussel

ncbi_organism_name: Photobacterium galatheae

ncbi_submitter: Technical University of Denmark


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Georgenia sp. SYP-B2076

ncbi_submitter: Shenyang pharmaceutical university


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Ningxia

ncbi_isolation_source: milk from dairy cow with mastitis

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Science of CAAS


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of Lausanne


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-07108

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Curvibacter sp.

ncbi_submitter: BILS


ncbi_isolation_source: Lower Respiratory Tract Secrection

ncbi_organism_name: Klebsiella variicola


ncbi_country: China: Jinan

ncbi_isolation_source: lab

ncbi_organism_name: Streptomyces clavuligerus

ncbi_submitter: Shandong First Medical University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 12-15 cm

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: University of Queensland


ncbi_isolation_source: pork

ncbi_organism_name: Salmonella sp. YP131-1

ncbi_submitter: Yangzhou University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22466;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Streptomyces sp. NPDC094031

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Enterococcus asini

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_submitter: Colorado State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Brigham Young University


ncbi_organism_name: Streptomyces microflavus


ncbi_organism_name: Chryseobacterium arthrosphaerae

ncbi_strain_identifiers: Water

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas putida


ncbi_organism_name: Streptomyces anthocyanicus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Methylomonas sp.


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium RIFCSPLOWO2_12_38_17


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Salmonella enterica CVM N45936 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Wings

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Vibrio furnissii

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Vicingus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 1314

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_strain_identifiers: CIM:MAG 1314

ncbi_submitter: Mayo Clinic


ncbi_country: USA: Colorado

ncbi_isolation_source: hyporheic zone

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France

ncbi_isolation_source: respiratory sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: AAFC


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Hallerella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mediterraneibacter faecis


ncbi_submitter: National Key Laboratory of Agricultural Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: EF

ncbi_submitter: Tsinghua University


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella sp. K5-233

ncbi_submitter: Institute of Marine research


ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Nanjing Agriculture University


ncbi_assembly_name: Olsenella urinainfantis

ncbi_organism_name: Olsenella urininfantis

ncbi_submitter: URMITE


ncbi_country: Canada: Levit; Alberta

ncbi_isolation_source: goose feces

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O121:H19;x__Escherichia coli O121:H19 str. 2010C-3840


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Italy

ncbi_isolation_source: sorghum sourdough

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_organism_name: Shigella sonnei


ncbi_country: China

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: HuaZhong Agricultural University


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolate: MEAT

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: MEAT;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_country: Italy: Turi

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Alberta


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: South Africa: King Dinuzulu Hospital

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: Germany: North Sea; Helgoland Roads

ncbi_isolation_source: algal culture

ncbi_organism_name: Pseudoalteromonas sp. CR1

ncbi_submitter: Cluster of Excellence Balance of the Microverse


ncbi_country: China: Liaoning

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimonas balearica

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: USA: Azusa; CA

ncbi_organism_name: Pseudomonas fluorescens

ncbi_strain_identifiers: NCTC 9428

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Quebec

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O9:H10

ncbi_submitter: Government of Canada


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: sinus swab

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Paenibacillus vini

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: Bacillus cereus VDM021

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus VDM021


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium RIFOXYC2_FULL_55_14


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Ontonagon; Michigan

ncbi_isolation_source: sink drain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Bradyrhizobium sp. AZCC 1614

ncbi_strain_identifiers: AZCC 1614


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Hubei

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wuhan CDC


ncbi_country: Switzerland: Zurich; Rumlang

ncbi_isolation_source: nymph

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_submitter: University of Trento


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: University of Copenhagen


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Haemophilus sp. HMSC061E01

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Tokyo Medical And Dental University


ncbi_organism_name: Limosilactobacillus pulli

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_country: Switzerland

ncbi_organism_name: Dickeya solani

ncbi_submitter: Institute for integrative biology of the cell


ncbi_country: South Korea

ncbi_isolation_source: makgeolli

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: CJNU 1877

ncbi_submitter: KOREA NATIONAL UNIVERSITY OF TRANSPORTATION


ncbi_country: Mexico

ncbi_isolation_source: river water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Sandiego


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Zhejiang Sci-Tech University


ncbi_organism_name: Kocuria marina

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides fragilis str. S6R5

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. S6R5


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: CA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_country: China:Jian ou

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Metamycoplasma salivarium ATCC 23064

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Houston; TX

ncbi_isolation_source: vagina

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Seattle University


ncbi_country: India

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Daping Hospital of Amry medical university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Haloferula sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Rudaea sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Microbacterium aurantiacum

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Clostridia bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Sterolibacterium sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Weifang

ncbi_isolation_source: chicken manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: University College London (UCL)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Rakuno Gakuen University; Mansoura University; Zewail City of Science and Technology


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H51158

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli 148

ncbi_submitter: University Medical Center Utrecht


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Porticoccaceae bacterium UBA7427

ncbi_submitter: University of Queensland


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Poultry

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Burkholderia alba

ncbi_submitter: Yunnan University


ncbi_organism_name: Brucella canis

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Taiwan

ncbi_isolation_source: hospital environment

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_country: Brazil: Cerrado

ncbi_organism_name: Delftia sp. PE138

ncbi_submitter: Universidade de Brasilia


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: China: the Yellow Sea

ncbi_organism_name: Pseudomonadaceae bacterium SI-3

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: food additive Lactoseven

ncbi_organism_name: Lacticaseibacillus paracasei subsp. paracasei

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Rhodobacterales bacterium


ncbi_country: USA

ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Australia: Brisbane

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: The University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Calgary


ncbi_organism_name: Varibaculum cambriense

ncbi_submitter: EMG


ncbi_organism_name: Holdemanella biformis

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Brazil

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans 11A1

ncbi_submitter: Cornell University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Diarrheal patient

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Gungdong

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Xanthomonas boreopolis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Faecalicatena contorta

ncbi_submitter: EMG


ncbi_organism_name: Alistipes putredinis


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus SJUD6107

ncbi_submitter: Broad Institute


ncbi_country: Belgium

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan:Wakayama; Shirahama

ncbi_isolation_source: garden soil

ncbi_organism_name: Cytophagales bacterium WSM2-2

ncbi_submitter: Department of Civil Engineering, National Institute of Technology, Wakayama college

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;x__unclassified Cytophagales;s__Cytophagales bacterium WSM2-2


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: coronal/gingival

ncbi_organism_name: Capnocytophaga sp. oral taxon 878

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;x__unclassified Capnocytophaga;s__Capnocytophaga sp. oral taxon 878


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_isolate: SPRUCE 585

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_strain_identifiers: SPRUCE 585

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Nanchang

ncbi_isolation_source: brain

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_isolation_source: purulent fluid

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Streptococcus suis

ncbi_submitter: AMSTERDAM UMC


ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_country: China: Sichuang

ncbi_isolation_source: aquarium water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: IMG-taxon 2596583598 annotated assembly

ncbi_organism_name: Ralstonia sp. UNCCL144

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Arthrobacter oryzae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Purdue University


ncbi_assembly_name: Rumen uncultured genome RUG13288

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Galway


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Haliea sp.

ncbi_submitter: Max planck institute for marine microbiology


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer D sample 29 PSU in less than .8 micron size fraction

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_assembly_name: Rumen uncultured genome RUG12089

ncbi_organism_name: uncultured Succiniclasticum sp.


ncbi_submitter: EI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Greece

ncbi_organism_name: Zymomonas mobilis


ncbi_country: USA: Gulf of Mexico

ncbi_isolation_source: marine sediments

ncbi_organism_name: Celeribacter baekdonensis

ncbi_submitter: University of Minnesota


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Lactobacillus helsingborgensis

ncbi_submitter: EMG


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Microgenomates group bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Penn State


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pedobacter jamesrossensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Clostridium sp. HCP1S3_C6

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: University of Parma


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_country: China: Guangdong

ncbi_isolation_source: sediment

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Peking University


ncbi_organism_name: Streptococcus saliviloxodontae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Switzerland: Changins

ncbi_organism_name: Xanthomonas graminis pv. graminis

ncbi_submitter: XTeam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas graminis;x__Xanthomonas graminis pv. graminis


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC078B01

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Italy: Pavia

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Mixta calida

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: China: Beijing

ncbi_isolation_source: respiratory tract infection

ncbi_submitter: AstraZeneca


ncbi_country: Spain

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: SC


ncbi_country: Switzerland: Zurich area

ncbi_isolation_source: phyllosphere material

ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: Agroscope


ncbi_country: Czech Republic: Ostrava

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter sp. ANC 3929

ncbi_submitter: Broad Institute


ncbi_country: China: Nanchang City

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Zhejiang University


ncbi_country: France: Rouen


ncbi_country: Canada: Alberta

ncbi_isolation_source: tissue sample from feedlot cattle

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_organism_name: Chloroflexus sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Lactobacillus delbrueckii


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Carboxylicivirga sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Enterococcus durans

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Singapore

ncbi_isolation_source: terminal ileum of healthy man

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: NNI


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Dexter Reservoir; Oregon

ncbi_isolation_source: cyanobacterial bloom in freshwater lake

ncbi_organism_name: Gloeotrichia echinulata DEX184

ncbi_submitter: Oregon State University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_country: China: Zhejiang Province

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonas triclosanedens


ncbi_country: Slovenia

ncbi_isolation_source: agricultural environmental material

ncbi_organism_name: Dickeya fangzhongdai

ncbi_submitter: National Institute of Biology


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Citrobacter sp. Cpo150

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: genital

ncbi_organism_name: Staphylococcus sp. HMSC069D07

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillus sp. WH-2

ncbi_submitter: Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. WH-2


ncbi_country: Finland

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich, Vetsuisse Faculty


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Colombia

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_genome_category: derived from single cell

ncbi_strain_identifiers: SCGC AAA003-L08

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium SCGC AAA003-L08


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: France: Lyon

ncbi_isolation_source: animal infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Firmicutes bacterium UBA2203

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA2203


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Hafnia alvei

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: Imported chicken meat

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: Netherlands

ncbi_strain_identifiers: STEC 2112

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Spain: Andalusia

ncbi_isolation_source: sausage

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: University of Granada


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Tabrizicola sp.

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shantou University Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Streptococcus suis 89-590

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Kitasatospora aureofaciens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: urethra

ncbi_organism_name: Schaalia turicensis

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Kineosporiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia sp. WS1342

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium C621

ncbi_submitter: Washington University


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: The J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;f__Treponemataceae;g__Treponema;s__Treponema socranskii;sb__Treponema socranskii subsp. socranskii;x__Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Boston College


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: uncultured Halothiobacillus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Singapore General Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chirstian Medical College


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Marinoscillum sp.


ncbi_organism_name: Bacillus paralicheniformis


ncbi_organism_name: Enterobacter cloacae complex sp. CDL018

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. CDL018


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Mexico: Churince; Cuatro Cienegas; Coahuila

ncbi_isolation_source: Sediment top

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Irapuato


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Wildermuthbacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wildermuthiibacteriota;x__unclassified Candidatus Wildermuthbacteria;s__Candidatus Wildermuthbacteria bacterium


ncbi_assembly_name: freshwater MAG --- MJ120516B_bin-043

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium


ncbi_isolation_source: Final carcass

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidad de las Americas


ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Germany: Freising

ncbi_isolation_source: Lupin moromi fermentation

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Streptomyces caelestis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: EPFL


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus koreensis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Portugal

ncbi_isolation_source: Mussels

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaerococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Listeria monocytogenes L99

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Germany: Dresden

ncbi_organism_name: Wohlfahrtiimonas chitiniclastica

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Listeria ivanovii subsp. ivanovii

ncbi_strain_identifiers: WSLC 3010

ncbi_submitter: ETH Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria ivanovii;sb__Listeria ivanovii subsp. ivanovii


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment

ncbi_organism_name: Rossellomorea aquimaris

ncbi_submitter: Cinvestav


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Egypt: Ismailia; El-Kasasin

ncbi_isolation_source: root nodules

ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: FR 19

ncbi_submitter: msa univeristy


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2085

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_country: Germany: Eilenburg

ncbi_isolation_source: active sludge of wastewater treatment plant

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Helmholtz Center for Environmental Research -UFZ


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Thailand: Buriram

ncbi_isolation_source: Agicultural soil

ncbi_organism_name: Bacillus sp. B.PNR2

ncbi_submitter: Mahasarakham University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. B.PNR2


ncbi_country: China

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Second Affiliated Hospial of Zhejiang University, School of Medicine


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0151


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Humaya River; Agua Caliente

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Japan: Tokyo Bay; Honshu

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Hawaii-Manoa


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Shaanxi

ncbi_isolation_source: anal swab

ncbi_submitter: Northwest A&F University


ncbi_isolate: XDR-PA

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA62331

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Shanghai

ncbi_isolation_source: clinic

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Municipal ceter for disease control & prevention


ncbi_country: Estonia

ncbi_isolation_source: urine

ncbi_submitter: University of Tartu


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.501 MAG

ncbi_isolate: bin.501 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Alphaproteobacteria bacterium UBA4588

ncbi_strain_identifiers: bin.501 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Oklahoma State University


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_isolation_source: Fluid

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.103 MAG

ncbi_isolate: bin.103 MAG

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_strain_identifiers: bin.103 MAG


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia

ncbi_isolation_source: cattle feces

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: University of Abuja


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp6 AA51

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp6 AA51

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Escherichia coli

ncbi_submitter: Roskilde University


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces sp. JWR5-1

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_organism_name: Flavobacterium lutivivi

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: Cucumber fermentation tank

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Salmonella sp. NW720

ncbi_submitter: Sichuan University


ncbi_country: South Korea:Seoul

ncbi_isolation_source: a fresh water

ncbi_organism_name: Tahibacter amnicola

ncbi_submitter: Chung-Ang university


ncbi_country: Kenya

ncbi_organism_name: Prevotella sp. UBA7557

ncbi_submitter: University of Queensland


ncbi_assembly_name: Escherichia coli CVM N36093PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N36093PS

ncbi_submitter: FDA


ncbi_organism_name: Acinetobacter sp. V104_13

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA: CA

ncbi_isolation_source: Environmental swab

ncbi_submitter: US Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Sarajane


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Candidatus Scybalosoma faecavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scybalosoma;s__Candidatus Scybalosoma faecavium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Salmonella sp. C3343


ncbi_organism_name: Undibacterium sp. Rencai35W

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Kitasatospora sp. NPDC057512

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: uncultured Melioribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. NW420

ncbi_submitter: Sichuan University


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: McMaster University


ncbi_country: Russia: Bykovsky Peninsula;Polar Fox Lagoon

ncbi_isolation_source: Polar Fox Lagoon sediment taken using 3m corer (60 mm diameter)

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Deferribacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Gansu

ncbi_isolation_source: dental plaque

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Northwest University for Nationalities


ncbi_country: USA: New York State

ncbi_isolation_source: Black Creek Park

ncbi_organism_name: Bacillus sp. RIT694

ncbi_submitter: Rochester Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RIT694


ncbi_country: Ireland

ncbi_isolation_source: Kidney; aborted fetus

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Universitat Rovira i Virgili