ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Candidatus Limisoma sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


gtdb_representative: f

ncbi_assembly_level: Contig

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Coprococcus catus

ncbi_submitter: UIUC


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. IR5458

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5458


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Streptosporangium sp. NPDC052375

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- LinL2_bin-0655

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlamydiae bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;x__environmental samples;s__uncultured Chlamydiae bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: CAU


ncbi_country: Thailand: Roi-Et

ncbi_isolation_source: meat

ncbi_submitter: Faculty of Public Health


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Anaerospora hongkongensis


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: University of Bern


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 co-cultured with S. maltophilia in Synthetic Cystic Fibrosis Media for 24 days in the absence of imipenem

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_country: Russia: Perm Region; Cherdyn

ncbi_organism_name: Borreliella bavariensis

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Ottawa

ncbi_isolation_source: Food starter culture 2

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Ottawa


ncbi_country: South Korea

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University College of medicine


ncbi_organism_name: Actinoplanes sp. NBRC 14428

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Taiwan

ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis OFXR-29

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_39_12


ncbi_country: Romania: Iasi

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_organism_name: Citrobacter sp. CRE-46

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Australia: Victoria

ncbi_isolation_source: aerobically stored beef

ncbi_organism_name: Brochothrix thermosphacta

ncbi_submitter: CSIRO Agriculture and Food; Food Safety and Stability Group


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: France: Bretagne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Limosilactobacillus oris

ncbi_submitter: University of California, Berkeley


ncbi_country: Greece: Piraeus

ncbi_isolation_source: blood

ncbi_submitter: University of Florence


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: AL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Tissierellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecalis EnGen0079


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Puniceicoccaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 18

ncbi_organism_name: Chlorobiaceae bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_organism_name: Rhizobium sp. AN63

ncbi_submitter: University of Massachusetts Amherst


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0919

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University


ncbi_country: Italy

ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: India: Kerala

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Marinobacter sp. LM1

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Leptospira kirschneri

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_country: China: Beijing

ncbi_isolation_source: Sediment of karst cave frome Guilin

ncbi_organism_name: Streptomyces sp. LHD-70

ncbi_submitter: College of life sciences


ncbi_country: Brazil

ncbi_isolation_source: sampled layer chicken litter with drag swab

ncbi_submitter: LAPOA-Federal University of Paraiba (UFPB)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum


ncbi_country: Indonesia

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Saccharospirillaceae bacterium

ncbi_submitter: Academia Sinica


ncbi_isolation_source: faecal

ncbi_submitter: SC


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_isolation_source: Grassland soil of experimental farm

ncbi_organism_name: Labrys miyagiensis

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Paenibacillus sp. FSL F4-0243

ncbi_submitter: Penn State


ncbi_country: China: WuHan

ncbi_isolation_source: bioaerosol of a chicken farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hubei Academy of Agricultural Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Marinobacter sp. MMG032

ncbi_submitter: San Diego State University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: oral swab

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: feces

ncbi_organism_name: Romboutsia ilealis


ncbi_country: China: Jiangsu

ncbi_isolation_source: Intestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Ruminococcus bromii


ncbi_country: China: Chongqing

ncbi_isolation_source: milk from farm

ncbi_submitter: South China Agricultural University


ncbi_country: French Southern and Antarctic Lands

ncbi_isolation_source: albatross chick carcass

ncbi_organism_name: Erysipelothrix amsterdamensis

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_country: China: Tibet

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Rhodobacter sp. SYSU G02092

ncbi_strain_identifiers: SYSU G02092

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;x__Rhodobacter group;g__Rhodobacter;x__unclassified Rhodobacter;s__Rhodobacter sp. SYSU G02092


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangxi Province

ncbi_organism_name: Ornithinimicrobium faecis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Streptomyces manipurensis

ncbi_submitter: University of Gdansk


ncbi_organism_name: Candidatus Alistipes avistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Shinella sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella sp. SKLX119925

ncbi_submitter: Zhejiang university


ncbi_organism_name: Sulfitobacter sp. M23905

ncbi_submitter: The Chinese University of Hong Kong


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Subdoligranulum sp.


ncbi_organism_name: Kitasatospora sp. NPDC048298

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Nocardia asiatica

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Thalassotalea nanhaiensis

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_isolation_source: stool

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 160

ncbi_submitter: SC


ncbi_organism_name: Aeromonas sp. R1-2

ncbi_submitter: Hangzhou CDC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: ballast tank

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Shandong university


ncbi_country: USA: Ohio; western Lake Erie

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Ruminococcus bromii


ncbi_assembly_name: JGI assembly

ncbi_organism_name: Candidatus Kryptonium thompsonii

ncbi_submitter: DOE - Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Kryptoniota;c__;o__;f__;g__Candidatus Kryptonium;s__Candidatus Kryptonium thompsonii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;g__Candidatus Kryptonium;s__Candidatus Kryptonium thompsonii


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: concordia university


ncbi_country: USA: Alabama

ncbi_isolation_source: plaque

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Yangzhou University


ncbi_country: Canada: Nova Scotia

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: IMG-taxon 2706795025 annotated assembly

ncbi_organism_name: Alkalispirochaeta americana

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Sichuan

ncbi_isolation_source: disinfected tableware

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 147

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Florida

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. ASUFL_F2_KS49

ncbi_submitter: Emory University


ncbi_assembly_level: Chromosome

ncbi_country: India: Arunachal Pradesh

ncbi_isolation_source: Endophytic bacteria from Medicinal Plant

ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: CSIR-North East Institute of Science and Technology


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: fodder

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: State Key Laboratory of Animal Nutrition


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Greece:Thermopyles geothermal spring

ncbi_isolation_source: geothermal water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Thessaly


ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_organism_name: Parageobacillus toebii NBRC 107807

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus WMCA6024

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Corynebacterium ammoniagenes

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Guangdong

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Intus Biosciences


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Washington


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Veillonella magna

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


gtdb_type_species_of_genus: t

ncbi_country: China: Beijing

ncbi_organism_name: Ligaoa zhengdingensis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: New York

ncbi_isolation_source: cystic fibrosis isolate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Lebanon

ncbi_isolation_source: Perianal swab

ncbi_submitter: University of Balamand


ncbi_isolation_source: Subcutaneous effusion

ncbi_submitter: University of West London


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: candidate division WWE3 bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Leyella stercorea

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Myxococcus xanthus DK 1622

ncbi_submitter: TIGR


ncbi_country: New Zealand: South Canterbury

ncbi_isolation_source: Pernasal

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: Trueperella abortisuis

ncbi_submitter: Ministry of Agriculture and Food, Government of British Columbia


ncbi_country: Kenya: Kibera

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Univ. of Maryland


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: China: Wuhan

ncbi_isolation_source: fruiting body

ncbi_organism_name: Pseudomonas tolaasii

ncbi_submitter: Jilin Agricultural University


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Luxembourg: Schifflange; Anoxic tank no.1

ncbi_isolation_source: water

ncbi_organism_name: Candidatus Neomicrothrix parvicella


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_organism_name: Cupriavidus basilensis

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni HN-CJD07035


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Netherlands

ncbi_isolation_source: activated sludge

ncbi_organism_name: Haliscomenobacter hydrossis DSM 1100

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Center for Laboratory Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Greece

ncbi_isolation_source: artisanal yoghurt

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: CIRM-BIA 1581

ncbi_submitter: Brigham Young University


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21196


ncbi_country: Switzerland

ncbi_isolation_source: pooled poultry feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Portugal: Oporto

ncbi_isolation_source: Raw-frozen dog food

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Companilactobacillus ginsenosidimutans

ncbi_strain_identifiers: EMML 3041

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: University of Nevada, Reno


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense genomovar finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Australia: Dandaragan; Western Australia

ncbi_organism_name: Candidatus Phytoplasma fabacearum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma fabacearum


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6546

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: USA: MI

ncbi_isolation_source: sand

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: California; San Francisco

ncbi_isolation_source: ethmoid sinus

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: UCSF


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas sp. NY15463

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Roseivirga sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: CDC of Sichuan Province


ncbi_organism_name: Streptococcus australis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_strain_identifiers: Os L e2

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Micavibrio sp.


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Shanghai MasScience Genomics Core

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Campylobacter sp. CFSAN093238

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Curtobacterium flaccumfaciens

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institut de Ciencies del Mar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor


ncbi_country: South Africa: THABO MOFUTSANYANA; Free State Province

ncbi_isolation_source: Cows Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Lebanon

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Lebanese American University


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_assembly_name: IMG-taxon 2608642220 annotated assembly

ncbi_organism_name: Streptococcus gallolyticus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: India: Trans-Himalayan region of Ladakh; Lotus Pond Hot Spring

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: Bose Institute


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Eggerthella lenta


ncbi_isolation_source: Tissue from head

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: South Korea: Chungcheongnam-do

ncbi_isolation_source: green algae

ncbi_organism_name: Cohnella algarum

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Cohnella sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Toho University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingobacterium siyangense


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: IFSC USP


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Tanzania: MARA

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_country: Russia: Krasnodar Krai; Gladkovsky mud volcano

ncbi_isolation_source: pool on the surface of a mud volcano

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: China: Zhejiang Hangzhou

ncbi_isolation_source: Drainage liquid

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Klebsiella oxytoca


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guangdong Ocean University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Missouri; St. Louis

ncbi_isolation_source: sputum

ncbi_submitter: Washington University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;sb__Mycobacterium intracellulare subsp. chimaera


ncbi_country: Australia

ncbi_isolation_source: Gastrointestine

ncbi_organism_name: Prescottella equi

ncbi_submitter: The University of Edinburgh


ncbi_country: Iran

ncbi_organism_name: Rhizobium sp. CC1099

ncbi_submitter: Murdoch University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Integrative Pharmacogenomics Institute (iPROMISE)


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas faucium

ncbi_strain_identifiers: PFa_WLI 23

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: EMG


ncbi_country: USA: Ohio

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Herbaspirillum robiniae

ncbi_submitter: The Ohio State University


ncbi_country: Italy

ncbi_isolation_source: Restaurant

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Sphingobium xenophagum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: USDA


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter sp. 210702-DFI.3.120

ncbi_submitter: University of Chicago


ncbi_country: USA: New York

ncbi_organism_name: Bifidobacterium breve


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: throat swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: North South University


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: HRSE 30

ncbi_submitter: Chung-Ang University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Chile: Tarapaca; Salar de Huasco; H5 site

ncbi_isolation_source: Sediment sample

ncbi_organism_name: Exiguobacterium sp. SH5S4

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. SH5S4


ncbi_country: China: Gansu

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_isolation_source: feedlot

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: USDA-ARS-USMARC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Segatella copri

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Peptoniphilus lacydonensis

ncbi_submitter: University of Minnesota


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Sweden

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: DTU


ncbi_country: China: Shenzhen

ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: BGI


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama Birmingham


ncbi_country: Japan

ncbi_submitter: Toho university


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Bacteroides nordii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: Drexel


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_organism_name: Aeromonas media

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Methylomagnum sp.


ncbi_organism_name: Gemmiger qucibialis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: IA

ncbi_isolation_source: excrement

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: HDDKT

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: separated from the corpses of silkworms that had died due to Bb natural infection in Daiyue district; Taian city; Shandong province; China.

ncbi_organism_name: Bacillus bombysepticus str. Wang

ncbi_strain_identifiers: wang

ncbi_submitter: State Key Laboratory of Silkworm Genome Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus bombysepticus;x__Bacillus bombysepticus str. Wang


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Zipacnadia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;c__Candidatus Zipacnadia;x__unclassified Candidatus Zipacnadia;s__Candidatus Zipacnadia bacterium


ncbi_country: Ethiopia: Oromiya; S/W/Shewa; Tullu bollo

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Pectobacterium parmentieri WPP163

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: USA

ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_country: USA: Ohio

ncbi_isolation_source: CATHETER

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: human skin

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: mssing

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: uncultured Atopobium sp.


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_organism_name: Bartonella heixiaziensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium maltaromaticum


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oxford


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin; prosthetic joint infection

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Prevotella sp.


ncbi_country: Switzerland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: [Eubacterium] saphenum

ncbi_submitter: EMG


ncbi_country: Czech Republic

ncbi_isolation_source: clinical sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, Charles University


ncbi_country: Lebanon

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Menzies School of Health Research


ncbi_country: USA: IA

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa: Madadeni

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0039

ncbi_submitter: Broad Institute


ncbi_country: Haiti

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_assembly_name: Burkholderia  cenocepacia BCC0052

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Canada: British Columbia

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_submitter: University of Tartu


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Xiamen University


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: zooplankton

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: IMG-taxon 2695420956 annotated assembly

ncbi_organism_name: Flavobacterium fluvii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Rhodopirellula sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Paenibacillus sp. FSL H8-0548

ncbi_submitter: Penn State


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: stool

ncbi_submitter: UNIFESP


ncbi_country: USA

ncbi_strain_identifiers: ISU 878

ncbi_submitter: USDA-ARS


ncbi_organism_name: Synechococcus sp. R55.6

ncbi_submitter: University of Montana


ncbi_assembly_name: IMG-taxon 2703719188 annotated assembly

ncbi_organism_name: Candidatus Pantoea floridensis


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Darwin Bioprospecting Excellence


ncbi_country: United Kingdom: England

ncbi_isolation_source: Urine (CYSTO)

ncbi_submitter: University of Liverpool


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Swab from L tympanic bulla

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: Ausgem


ncbi_organism_name: Lysobacter panacisoli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Zhejiang

ncbi_isolation_source: Zhejiang; China

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: China: Xiangtan

ncbi_isolation_source: Abdominal wound discharge

ncbi_submitter: University College London (UCL)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Cryomorphaceae bacterium MED-G14

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: Ireland: Dublin

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium intracellulare subsp. chimaera

ncbi_submitter: Trinity College Dublin


ncbi_isolation_source: unknown

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia wexlerae


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: Institute of Marine Research


ncbi_country: USA: Madison; WI

ncbi_isolation_source: Conversion residue fermenting bioreactor

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: VA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Akkermansia muciniphila CAG:154

ncbi_submitter: DTU


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Gloeotrichia echinulata IR180

ncbi_organism_name: Gloeotrichia echinulata IR180

ncbi_submitter: Oregon State University


ncbi_country: China: Shaanxi

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Fibrobacterota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__environmental samples;s__uncultured Fibrobacterota bacterium


ncbi_isolation_source: sub-seafloor sulfide deposits

ncbi_organism_name: bacterium BMS3Bbin14

ncbi_submitter: JAMSTEC


ncbi_assembly_name: PAIRED

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MASINDE MULIRO UNIVERSITY OF SCIENCE AND TECHNOLOGY


ncbi_organism_name: Phocaeicola coprocola


ncbi_organism_name: uncultured Algimonas sp.


ncbi_organism_name: Bartonella gliris

ncbi_submitter: Military Health Institute


ncbi_organism_name: Pseudoalteromonas marina

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Chthonomonas sp.


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Shewanella oncorhynchi

ncbi_submitter: Nofima


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Nibricoccus sp.

ncbi_submitter: EMG


ncbi_organism_name: Lactococcus lactis subsp. hordniae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Flavobacterium sp. RHBU_3

ncbi_submitter: Hannam University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Spain

ncbi_isolation_source: water

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: UCM


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: ZhengZhou

ncbi_isolation_source: infant sputum

ncbi_submitter: YangZhou university


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: laboratory

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Chr. Hansen


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P7 CL A28

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: USA: Boston

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: freshwater MAG --- E14_bin-1440

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Greece

ncbi_organism_name: Escherichia coli

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: USA: Virginia

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: James Madison University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: Francisella tularensis subsp. novicida

ncbi_submitter: Guangdong Provincial Hospital of Traditional Chinese Medicine


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 0019

ncbi_submitter: The University of Queensland


ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Kasetsart University


ncbi_country: China: Zhejiang

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Streptomyces canus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus WMCA6180

ncbi_submitter: Broad Institute


ncbi_country: Sri Lanka: Jaffna

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: USA: Seattle

ncbi_isolation_source: Airway secretion

ncbi_submitter: SCH


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bifidobacterium crudilactis

ncbi_submitter: Technical University of Denmark


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_assembly_name: freshwater MAG --- B4coas_bin-1759

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_country: China: Chengdu

ncbi_isolation_source: Pork meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: Malaysia: Negeri Sembilan

ncbi_isolation_source: Aquaculture pond water

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mexico: Valparaiso

ncbi_isolation_source: Biological sample of a male horse

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: Laos

ncbi_isolation_source: River

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Bern


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_country: China: Anhui

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Canada: Quebec

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Enemella evansiae

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Colombia

ncbi_isolation_source: carcasses from chicken farm

ncbi_submitter: Universidad de los Andes


ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus hominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI


ncbi_country: Costa Rica: Guanacaste Conservation Area

ncbi_isolation_source: insect

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Cornell University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_country: China: Guizhou

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: China

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;x__unclassified Candidatus Deferrimicrobiaceae;s__Candidatus Deferrimicrobiaceae bacterium


ncbi_country: USA: Philadelphia

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Pennsylvania Perelman School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Shaanxi

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_country: China: Qinghai


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Luxembourg: Schifflange

ncbi_isolation_source: water

ncbi_organism_name: Leptospiraceae bacterium UBA2033

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobia subdivision 6 bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Verrucomicrobia subdivision 6;x__unclassified Verrucomicrobia subdivision 6;s__Verrucomicrobia subdivision 6 bacterium


ncbi_isolation_source: chicken meat products

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces sp. NPDC046557

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides ovatus


ncbi_country: USA: New York; Buffalo

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: University at Buffalo


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2024EL-00227


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Oviedo


ncbi_assembly_name: Streptomyces sp. FH1

ncbi_organism_name: Streptomyces carpaticus

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Westlake University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Serratia sp. CY62683

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY62683


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Coprococcus phoceensis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_country: Argentina: Vila; Santa Fe

ncbi_isolation_source: first pond of the AUR serial dairy industry stabilization pond system

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: INTA


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Streptomyces sp. NPDC088768

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ilyomonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- Loc080925-6m_bin-0044

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 18

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: University of Wyoming


ncbi_isolation_source: Top soil

ncbi_organism_name: Paraburkholderia saeva

ncbi_submitter: GHENT UNIVERSITY


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_assembly_name: Rumen uncultured genome RUG14080

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Campylobacter fetus

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_country: Brazil: Iranduba; Manaus

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College Dublin


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Brevundimonas naejangsanensis

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: IBCH RAN


ncbi_country: Pakistan: Hyderabad

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus sp. seq1

ncbi_submitter: Mohammad Ali Jinnah University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. seq1


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: New Zealand

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: subgingival plaque of chronic periodontitis lesion

ncbi_organism_name: Treponema denticola

ncbi_strain_identifiers: KCOM 3500

ncbi_submitter: Chosun University


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Italy: Rome

ncbi_isolation_source: swab from patient with pharyngitis/tonsilitis

ncbi_submitter: Paul A. Hoskisson

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Corynebacteriaceae;g__Corynebacterium;s__Corynebacterium diphtheriae;x__Corynebacterium diphtheriae bv. gravis;x__Corynebacterium diphtheriae bv. gravis str. ISS 4746


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Rifleibacteriota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rifleibacteriota;x__unclassified Candidatus Rifleibacteriota;s__Candidatus Rifleibacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: France

ncbi_isolation_source: rhizoplane

ncbi_organism_name: Phyllobacterium brassicacearum

ncbi_strain_identifiers: STM 196

ncbi_submitter: ARRIAM


ncbi_country: China

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Texas

ncbi_isolation_source: Bone/Joint

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Utah


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_assembly_name: freshwater MAG --- AM-2014-D3_bin-523

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: Proximal colon


ncbi_country: Colombia: Medellin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: fish gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Viet Nam: Cao Phong; Hoa Binh

ncbi_isolation_source: soil from orange tree roots

ncbi_submitter: ENDOBICA


ncbi_isolation_source: sputum

ncbi_organism_name: Enterococcus sp. HMSC076D08

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: desert soil

ncbi_organism_name: Nocardioides sp. SYSU D00038

ncbi_strain_identifiers: SYSU D00038

ncbi_submitter: Sun Yat-Sen University


ncbi_country: South Korea: Pocheon

ncbi_isolation_source: soil

ncbi_organism_name: Pedobacter ginsenosidimutans

ncbi_submitter: GCAT-SEEK


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_country: Spain: Tarragona

ncbi_isolation_source: Grape must

ncbi_organism_name: Gluconobacter cerinus

ncbi_strain_identifiers: CECT 9110

ncbi_submitter: Universitat Rovira i Virgili


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Microcystis aeruginosa PCC 9806

ncbi_submitter: Genoscope CEA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Duodenibacillus sp.

ncbi_submitter: EMG


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_submitter: University of Calgary


ncbi_country: USA: Kentucky

ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_country: Japan:Yamanashi; Kofu

ncbi_isolation_source: Soil

ncbi_organism_name: Spirilliplanes yamanashiensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_assembly_name: freshwater MAG --- YR_bin-4956

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Canada: Guelph

ncbi_isolation_source: Seed mucilage

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Guelph


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: stool

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Goldcoast


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Nottingham Trent University


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Corallococcus sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: Bolivia: Aranjuez; La Paz

ncbi_isolation_source: Choqueyapu River

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Italy

ncbi_isolation_source: duedonoscope instrument

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Campus Bio-medico of Rome


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F26032

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: LBC


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: Lung tissue

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VIDO Inter-Vac, University of Saskatchewan


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus sp. FSL K6-0138

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-0138


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Deakin University


ncbi_submitter: MRSN BI Team


ncbi_country: China: Tibet

ncbi_isolation_source: hotspring

ncbi_organism_name: Azohydromonas sediminis

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Novosphingobium aquae

ncbi_submitter: Hankyong National University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Streptomyces albogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Stanford University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_12_FULL_64_13


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: Soochow University


ncbi_country: USA: North Carolina

ncbi_isolation_source: Trach

ncbi_organism_name: Klebsiella pneumoniae CHS 53

ncbi_strain_identifiers: CHS 53

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 53


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Citrobacter freundii

ncbi_strain_identifiers: CFTMDU

ncbi_submitter: Tokyo Medical and Dental University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Staphylococcus epidermidis VCU118

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Laos

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_isolation_source: abscess hepatic

ncbi_organism_name: Lactobacillus sp. HMSC078F07

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolate: AOP25_B1_surf _bin _7

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: AOP25_B1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Bradyrhizobium erythrophlei

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: CNR-IPSP S.S. Bari


ncbi_organism_name: Massilia consociata


ncbi_organism_name: Nocardia sp. CA-135953

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Ectopseudomonas chengduensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Phycisphaerales bacterium JB060

ncbi_submitter: JNTUH


ncbi_organism_name: Methylobacterium fujisawaense

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Paenibacillus abyssi


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Netherlands

ncbi_isolation_source: Secondary rapid sand filter

ncbi_submitter: Radboud University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_submitter: Harvard University


ncbi_organism_name: Francisella orientalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pseudacidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The University of Queensland


ncbi_country: Russia: Moscow

ncbi_isolation_source: feces of healthy child (2 years and 6 month old; male)

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA:California;Waddell Creek

ncbi_isolation_source: Water sample

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: EPFL


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaeromassilibacillus sp.


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: USA: AL

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: Paenibacillus sp. FSL H8-0079

ncbi_submitter: Penn State


ncbi_country: USA: Licking County; Ohio

ncbi_isolation_source: groundwater well

ncbi_organism_name: Parcubacteria group bacterium LiPW_15

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium LiPW_15


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Layer chicken liver; farm

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University