ncbi_assembly_name: Rumen uncultured genome RUG146

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptococcus pneumoniae D39

ncbi_submitter: TIGR


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_assembly_level: Contig

ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: HRSE 10

ncbi_submitter: Chung-Ang University


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: USA: WA

ncbi_submitter: US Food and Drug Administration


ncbi_assembly_level: Chromosome

ncbi_country: France

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Inserm


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Pork Chop

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ohio


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Lebanon: Beirut

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_country: USA: GA

ncbi_isolation_source: chicken bile

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Texas Tech University


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: Peking University People's Hospital


gtdb_representative: t

ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: uncultured Kingella sp.


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: Caldicellulosiruptor bescii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: University of Washington


ncbi_country: Turkey: Ankara

ncbi_isolation_source: blood sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ankara Yildirim Beyazit University


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Qinghai

ncbi_isolation_source: diseased goat

ncbi_organism_name: Brucella melitensis bv. 3

ncbi_submitter: National Institute for Communicable Disease Control & Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: United Kingdom

ncbi_submitter: Public Health England


ncbi_country: Australia: Brisbane

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: The University of Queensland


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Victivallis vadensis

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: USA: New York; NY

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MSKCC


ncbi_country: Australia: Jervis Bay

ncbi_isolation_source: Associated with marine sponge; Sycon capricorn

ncbi_organism_name: Francisella sp. Scap27

ncbi_submitter: The Commonwealth Scientific and Industrial Research organisation


ncbi_isolation_source: clinical sample

ncbi_organism_name: Bacillus basilensis

ncbi_refseq_category: reference genome

ncbi_submitter: University Hospital Basel

ncbi_type_material_designation: assembly from type material


ncbi_submitter: Maynooth University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: EMG


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Capnocytophaga sputigena


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Mycolicibacterium houstonense

ncbi_submitter: Suzhou Medical College of Soochow University


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Methylocystis sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vulcanimicrobiota bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Streptomyces goshikiensis


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 70

ncbi_submitter: Ghent University


ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: Salmonella sp. NW293

ncbi_submitter: Sichuan University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Zodletone Spring; Anadarko; OK

ncbi_isolation_source: spring sediment

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Pelistega suis

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan: Xinbei

ncbi_isolation_source: activated sludge from Linkou wastewater treatment plant

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Egypt: Tanta

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


gtdb_type_species_of_genus: t

ncbi_country: South Korea

ncbi_isolation_source: stool

ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: Seoul National University


ncbi_country: China: South China Sea

ncbi_isolation_source: surface sediments in deep sea

ncbi_organism_name: Billgrantia desiderata

ncbi_submitter: The Third Institute of Oceanography, Ministry of Natural Resources of PR China


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: Belgium: Antwerp

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_assembly_name: freshwater MAG --- MJ130729B_bin-712

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Streptomyces hygroscopicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Mexico: Guadalajara

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: USA

ncbi_isolation_source: sink drain

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Vienna


ncbi_organism_name: Streptococcus gallolyticus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: India: NewDelhi

ncbi_submitter: Christian Medical College


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: University of East Anglia


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_assembly_name: Rumen uncultured genome RUG10474

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Avimonas merdigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Avimonas;s__Candidatus Avimonas merdigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avimonas;s__Candidatus Avimonas merdigallinarum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Olsenella profusa F0195

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute of Public Health NIH - National Research Institute


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Lelliottia nimipressuralis


ncbi_organism_name: Streptomyces sp. NPDC005904


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Pakistan: Thal Desert

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 18

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Denmark

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_country: Norway: Norwegian Sea

ncbi_organism_name: Psychrobacter sp. P11F6

ncbi_submitter: Norwegian University of Science and Technology


ncbi_isolation_source: Human feces

ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The University of Tokyo


ncbi_country: China: Quanzhou Bay

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Paracrocinitomix mangrovi

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Antarctica: King George Island; Barton Peninsula

ncbi_isolation_source: lichen

ncbi_organism_name: Sphingosinicellaceae bacterium PAMC 29367

ncbi_submitter: Korea Polar Research institute


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter sp. 1578804

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 1578804


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Rhodospirillum centenum SW

ncbi_strain_identifiers: ATCC 51521;SW

ncbi_submitter: TGen


ncbi_country: China: Luzhou

ncbi_isolation_source: no

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Southwest Medical University


ncbi_country: Norway: Aas

ncbi_isolation_source: surface water

ncbi_organism_name: Paraburkholderia sp. NMBU_R16

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: uncultured Bacillaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Fourth Hospital of Hebei Medical University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: bacterium Ga0077546

ncbi_submitter: Biology Centre CAS


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: Salmonella enterica CVM 43776 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bradyrhizobium sp. DN5

ncbi_submitter: University of Namibia


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ruian Maternal and Child Health Hospital


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: EMG


ncbi_country: Algeria

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 70021

ncbi_submitter: IGS


ncbi_country: Argentina: Buenos Aires; a tawn park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. AR4-2

ncbi_submitter: University of Bialystok

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. AR4-2


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_country: China

ncbi_isolation_source: seawater

ncbi_organism_name: Hyphomonas sp. CY54-11-8

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Egypt

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Moscow

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG11

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Genetics and Animal Breeding, Chattogram Veterinary and Animal Sciences University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Xanthobacter sp. AM11

ncbi_submitter: University of East Anglia


ncbi_organism_name: Escherichia sp. WS1450

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Candidatus Aphodousia faecalis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Sutterellaceae;x__Sutterellaceae incertae sedis;g__Candidatus Aphodousia;s__Candidatus Aphodousia faecalis


ncbi_organism_name: Streptomyces niveus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycolicibacterium septicum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antwerp


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Enterobacter sp. P82

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Methylobacterium sp. CCH5-D2

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: China: Zhengzhou

ncbi_isolation_source: Powdered Infant Formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Henan Center for Diease Control and Prevention


ncbi_organism_name: [Mannheimia] succiniciproducens MBEL55E

ncbi_submitter: Korea Advanced Institute of Science and Technology, Republic of Korea, Yuseong-gu


ncbi_country: Antarctica: King George Island; Barton Peninsula

ncbi_isolation_source: lichen

ncbi_organism_name: Polymorphobacter sp. PAMC 29334

ncbi_submitter: Korea Polar Research institute


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Zurich


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-L13

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Spain: Catalunya

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_isolation_source: in silico pooling of 166 mouse fecal samples

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: IMG-taxon 2599185167 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFPP28

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Yantai University


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_isolation_source: cold seep

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Guinea

ncbi_organism_name: Escherichia coli

ncbi_submitter: Robert Koch Institute


ncbi_isolate: CON6 bin12

ncbi_organism_name: Catonella sp.

ncbi_strain_identifiers: CON6 bin12

ncbi_submitter: China Agricultural University


ncbi_organism_name: Gluconacetobacter dulcium

ncbi_submitter: Ghent University


ncbi_isolation_source: stool

ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Clostridium sp. HMSC19C09

ncbi_submitter: The Genome Institute at Washington University


ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_country: China: Shenyang; Liaoning

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium sp. L18

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Kazakhstan: Kyzyl-Orda Region; Aralsk District

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague institute "Microbe"


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F89053

ncbi_submitter: Broad Institute


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: INRA-MIG


ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_country: China: Shenzhen

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: USA

ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides fragilis str. S6R6

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. S6R6


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_country: Canada: Nunavut; Ellesmere Island; Lake A

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechococcus sp. CS-1331

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_country: China

ncbi_isolation_source: marine

ncbi_organism_name: Vibrio sp. D54

ncbi_submitter: shandong university


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: Environment

ncbi_submitter: unverisity medical center groningen


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Syntrophobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Spain: Madrid

ncbi_isolation_source: skin

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: seawater plated on vibrio selective media

ncbi_organism_name: Vibrio splendidus 12E03


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: CSF or blood culture

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: Poland: Warsaw

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: China: Hong Kong

ncbi_isolation_source: blood culture

ncbi_organism_name: Acinetobacter baumannii AB405E4

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_isolation_source: osteomyelitis

ncbi_organism_name: Staphylococcus aureus M2

ncbi_submitter: Institute for Genome Sciences


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_country: Taiwan

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Itami


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany: Biebertal

ncbi_organism_name: Devosia epidermidihirudinis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: DHS Bioreactor

ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: Water Quality Control Lab, Division of Environmental Engineering, Faculty of Engineering, Hokkaido University


ncbi_country: Spain

ncbi_isolation_source: patient

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_isolation_source: soil

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Sudan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: King Abdulaziz University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Microtetraspora glauca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Weissella confusa

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oribacterium sinus

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Vulcanococcus sp. CPBay_Sum27G08_21

ncbi_submitter: Clemson University


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: caecum

ncbi_organism_name: Pseudoflavonifractor phocaeensis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Chile: Santiago

ncbi_isolation_source: beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cinvestav


ncbi_organism_name: Streptomyces sp. NPDC005551


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Egibacter sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Parafrigoribacterium soli

ncbi_strain_identifiers: SYSU BS000078

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-9448

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bordetella pertussis CHLA-13

ncbi_submitter: JCVI


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Czech Republic

ncbi_isolation_source: spleen

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Eubacterium sp. CAG:786

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:786


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Francisellaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: bacterium

ncbi_submitter: Universite Laval


ncbi_country: USA: Yellowstone Lake; Wyoming

ncbi_isolation_source: sediments washed off of a biofilm that was attached to a sub-lacustrine hydrothermal vent

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Montana State University


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Manitoba


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus sp. PVC-6B

ncbi_submitter: SHANGHAI JIAO TONG UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. PVC-6B


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_submitter: University of Texas at Austin


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Anaerolinea sp.


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Albidovulum sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0058

ncbi_submitter: Broad Institute


ncbi_isolation_source: Vegetable

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Institute of Crop Sciences, Chinese Academy of Agricultural Science


ncbi_isolation_source: fecal sample

ncbi_organism_name: Helicobacter saguini

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Guangxi; Dashan

ncbi_organism_name: Sulfurirhabdus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Alphaproteobacteria bacterium TMED62

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Canada

ncbi_organism_name: Helicobacter pylori R018c

ncbi_submitter: IGS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ileibacterium valens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus sp. CAG:988

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CAG:988


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alphaproteobacteria bacterium UBA7371

ncbi_submitter: University of Queensland


ncbi_country: Ethiopia

ncbi_isolation_source: injera fermented dough

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: Brigham Young University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Stanford University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: pepper

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidade de Sao Paulo


ncbi_assembly_name: IMG-taxon 2667527413 annotated assembly

ncbi_organism_name: Pseudomonas guineae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC053782

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: EMG


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;s__Candidatus Shapirobacteria bacterium CG10_big_fil_rev_8_21_14_0_10_48_15


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Holdemanella biformis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Germany

ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_country: Netherlands: Utrecht

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: TU Delft


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of California at Davis


ncbi_organism_name: Sphingobacterium humi

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Ghent University Department of Pharmaceutical Sciences Laboratory of Pharmaceutical Microbiology


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: dog oral cavity

ncbi_organism_name: Capnocytophaga cynodegmi

ncbi_submitter: Osaka Institute of Public Health


ncbi_isolation_source: anaerobic bioreactor

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ


ncbi_country: Antarctica

ncbi_organism_name: Flavobacterium sp. 28A


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Algeria

ncbi_isolation_source: Water treatment plant sample

ncbi_submitter: Universite Laval


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Trebonia sp.

ncbi_submitter: National University of Singapore


ncbi_country: Antarctica: Zhongshan Station

ncbi_isolation_source: Antarctic sea ice

ncbi_organism_name: Rhodococcus sp. NJ-530

ncbi_submitter: First Institute of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NJ-530


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: water

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H49917

ncbi_submitter: Broad Institute


ncbi_country: Thailand

ncbi_isolation_source: oil palm rhizosphere soil

ncbi_organism_name: Streptomyces palmae

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Florida Keys; Sand Key

ncbi_isolation_source: marine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_country: Japan: Off Shimokita Peninsula

ncbi_isolation_source: marine sediment

ncbi_organism_name: Pelolinea submarina

ncbi_submitter: Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: Bhutan

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_organism_name: Patescibacteria group bacterium UBA1549

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA1549


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 54 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Streptomyces sp. NPDC014779

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Deferribacter desulfuricans SSM1

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_submitter: Christian Medical College


ncbi_country: China: Hefei

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: the First Affiliated Hospital of Anhui Medical University


ncbi_country: South Korea: Jeju

ncbi_isolation_source: larvae

ncbi_organism_name: Tenebrionicola larvae

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan university


ncbi_organism_name: Marinobacter sp. LN3S78

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: Methylomonas sp. MS20

ncbi_submitter: Faculty of Science, Chiang Mai University


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Streptomyces sp. NPDC058475

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Anaerolinea sp.


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: Poland: Baltic Sea; Gdansk Bay; Sopot

ncbi_isolation_source: coastal site with brackish water

ncbi_organism_name: Limnohabitans sp. Bal53

ncbi_submitter: Biology Centre CAS


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Hainan

ncbi_isolation_source: Poultry

ncbi_organism_name: Escherichia albertii

ncbi_strain_identifiers: Sample 168

ncbi_submitter: Zigong Center for Disease Control and Prevention


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Shigella boydii

ncbi_strain_identifiers: NCTC 9850

ncbi_submitter: CDC


ncbi_country: China: Bejing

ncbi_isolation_source: Anus

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Catenibacterium sp. CAG:290

ncbi_submitter: DTU


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: India: Assam

ncbi_isolation_source: hospital patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Romania: Brasov

ncbi_isolation_source: feces

ncbi_submitter: Cantacuzino National Institute of Medico-Military Research-Development


ncbi_organism_name: Mesosutterella multiformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Huizhou

ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Qipengyuania intermedia

ncbi_submitter: Guangdong Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_country: China: Hangzhou

ncbi_isolation_source: bloodstream

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: CNPSo 104

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Zymomonadaceae;g__Zymomonas;s__Zymomonas mobilis;sb__Zymomonas mobilis subsp. mobilis;x__Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821


ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Cloacibacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Greece: Larissa

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Manitoba

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_country: USA: Utah

ncbi_isolation_source: Turbid saltwater

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. novicida;x__Francisella tularensis subsp. novicida U112


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Malaysia

ncbi_strain_identifiers: USAMRU Malaysia #20

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;x__pseudomallei group;s__Burkholderia thailandensis;x__Burkholderia thailandensis USAMRU Malaysia #20


ncbi_country: USA: IL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_isolation_source: pasta filata cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Argentina: Rosario

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerofustis stercorihominis

ncbi_submitter: University of Chicago


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: France: grocery store

ncbi_isolation_source: Fleur de sel salt

ncbi_organism_name: Guptibacillus hwajinpoensis

ncbi_submitter: UC Davis


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli BWH 24

ncbi_strain_identifiers: BWH 24

ncbi_submitter: Broad Institute


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2248


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Cyclobacteriaceae bacterium


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aliisedimentitalea sp. MJ-SS2

ncbi_submitter: Sungkyunkwan University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Micrococcus luteus SK58

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Modestobacter sp. Leaf380

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: marine

ncbi_organism_name: Pseudomonas sp.


ncbi_isolation_source: not provided

ncbi_organism_name: Streptococcus oralis


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Sichuan

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: [Eubacterium] saphenum

ncbi_submitter: University of Alberta


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: INRAE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Italy: Sicilia; Messina; Tusa

ncbi_isolation_source: spleen; lymph nodes

ncbi_organism_name: Brucella abortus

ncbi_submitter: University of New Hampshire


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Japan:Ibaraki; Lake Kasumigaura

ncbi_isolation_source: water

ncbi_organism_name: Microcystis aeruginosa NIES-3787

ncbi_submitter: National Institute for Environmental Studies


ncbi_country: Poland: Kozienice

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acidiphilium sp.

ncbi_submitter: EMG


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: JAC 231

ncbi_submitter: Federal University of Maranhao


ncbi_country: Canada: Ottawa; Ontario

ncbi_isolation_source: agricultural site

ncbi_organism_name: Lysobacter antibioticus

ncbi_submitter: Rutgers, The State University of New Jersey


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Parabacteroides timonensis

ncbi_submitter: URMITE


ncbi_country: USA

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Medicago Hapmap Project


ncbi_organism_name: uncultured Legionella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rugamonas sp.


ncbi_organism_name: Bacillus sp. TD11

ncbi_submitter: Kohat University of Science & Technology, Kohat Pakistan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. TD11


ncbi_submitter: Bacteriology1, National Institute of Infectious Diseases - Japan


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Vienna


ncbi_organism_name: Alistipes dispar

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of California Berkeley


ncbi_isolate: MIP2405 B

ncbi_organism_name: Empedobacter brevis

ncbi_strain_identifiers: MIP2405 B

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: USDA-ARS


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Synechococcus sp. R70.1

ncbi_submitter: University of Montana


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Eubacteriales bacterium


ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Alberta

ncbi_isolation_source: Ground beef from beef processing plant

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Denmark

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Statens Serum Institut


ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus str. JKD6008


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiaceae bacterium AF31-3BH

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Madrid

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Collinsella phocaeensis

ncbi_submitter: EMG


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: BIOPHYT

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Kocuria sp. CPCC 205231

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Kocuria;x__unclassified Kocuria;s__Kocuria sp. CPCC 205231


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Microbiology and Infectious Diseases, Toho University School of Medicine


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: China: Weihai

ncbi_isolation_source: offshore sediment

ncbi_organism_name: Mycolicibacterium sp. F2034L

ncbi_submitter: Shandong University,Weihai


ncbi_country: USA: New York

ncbi_isolation_source: unknown environmental sample

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Aequorivita sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Beijing

ncbi_isolation_source: mash of wine

ncbi_organism_name: Pontibacter beigongshangensis

ncbi_submitter: Beijing Technology and Business University


ncbi_organism_name: Pseudoflavonifractor capillosus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Isosphaeraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Switzerland

ncbi_isolation_source: milk sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_submitter: SC


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Metallibacterium sp.


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11242

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Chelatococcus sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of California Davis


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: VETUNI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Ligilactobacillus salivarius


ncbi_country: USA: Colorado

ncbi_isolation_source: hyporheic zone

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Planctomycetes bacterium ADurb.Bin401

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium ADurb.Bin401


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_country: France

ncbi_isolation_source: root

ncbi_organism_name: Leifsonia sp. Root227

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: EPFL


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Rubrobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: USA: Florida

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Pasteurella testudinis

ncbi_submitter: SC


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Radboud University


ncbi_isolation_source: feces

ncbi_organism_name: Psychrobacter sp. 4Dc

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Antarctica: James Ross Island; Hill above Cape Lachman

ncbi_isolation_source: volcanic tuff

ncbi_organism_name: Hymenobacter glacialis

ncbi_submitter: Masaryk University


ncbi_organism_name: Leclercia adecarboxylata


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Italy

ncbi_isolation_source: rectal swab

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: SAHMRI


ncbi_organism_name: Mycobacterium canetti

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_organism_name: Litorivicinaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine, Chulalongkorn University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: University of Zurich


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gallintestinimicrobium sp.


ncbi_organism_name: Aquificota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-1258

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus ureilyticus

ncbi_strain_identifiers: RSM-JSascm

ncbi_submitter: St. Francis University College of Health and Allied Sciences


ncbi_isolate: AOP42_A2_surf _bin _21

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP42_A2_surf _bin _21

ncbi_submitter: Genoscope


ncbi_isolation_source: Richmond Mine C75 location

ncbi_organism_name: Nitrospirae bacterium UBA6678

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium UBA6678


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Peribacteraceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;x__unclassified Candidatus Peribacteraceae;s__Candidatus Peribacteraceae bacterium


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: Corn Polenta

ncbi_submitter: UCR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens ATCC 13880


ncbi_isolation_source: Wisconsin Soil

ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: Ohio State university


ncbi_assembly_name: freshwater MAG --- G1coas_bin-1575

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_organism_name: Streptomyces sp. NBC_00663

ncbi_submitter: Technical University of Denmark


ncbi_country: Antarctica

ncbi_isolation_source: Antarctica soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: University of New South Wales


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Pseudomonas sp. 18058

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Ausgem


ncbi_country: Thailand

ncbi_isolation_source: pickle (saumure)

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_strain_identifiers: CIRM-BIA 2174

ncbi_submitter: Brigham Young University


ncbi_country: Bulgaria

ncbi_isolation_source: feces

ncbi_organism_name: Lapidilactobacillus dextrinicus

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Azonexus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: XDL

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: China: Guangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sun Yat-sen University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacillus cereus group sp. BCN31

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN31


ncbi_assembly_name: freshwater MAG --- Umea3_bin-2596

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Burkholderia pyrrocinia

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: human gut

ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter radioresistens


ncbi_organism_name: Chlamydia trachomatis

ncbi_strain_identifiers: male 54

ncbi_submitter: Hokkaido University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_organism_name: Actinobacillus equuli subsp. haemolyticus

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Tianjin

ncbi_organism_name: Klebsiella quasipneumoniae subsp. similipneumoniae

ncbi_submitter: City University of Hong Kong


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: California

ncbi_isolation_source: Advanced Water Purification Facility

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Colorado School of Mines


ncbi_country: China: Bohai Gulf

ncbi_isolation_source: marine sediment

ncbi_organism_name: Halomonas marinisediminis

ncbi_submitter: Binzhou Medical University


ncbi_organism_name: Butyrivibrio fibrisolvens

ncbi_submitter: AgResearch Ltd.


ncbi_country: USA: AR

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater aquifer

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: The Ohio State University


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Xanthomonas alfalfae

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: cornea of a patient with ulcerative keratitis

ncbi_organism_name: Pseudomonas aeruginosa 39016

ncbi_submitter: Centre for Genomics Research, University of Liverpool


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Benemerita Universidad Autonoma de Puebla


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: China

ncbi_isolation_source: Hematology

ncbi_organism_name: Escherichia coli

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Paenibacillus cellulositrophicus

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Roseovarius confluentis

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Lactobacillus amylovorus


ncbi_organism_name: uncultured Motilibacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Streptomyces sp. NPDC014684

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Pseudoalteromonas lipolytica

ncbi_submitter: ShangHai Ocean University


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Research Center of Biotechnology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin50

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MDV bin50

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces sp. NPDC048305


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Babeliaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Babeliaceae;x__environmental samples;s__uncultured Candidatus Babeliaceae bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; Equitorial atlantic

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GP01-A6

ncbi_submitter: Arkin Lab


ncbi_country: Hungary: Bugyi

ncbi_isolation_source: enrichment culture AER2 inoculated with biofilm which develop in hydrocarbon contaminated groundwater; aerobic enrichment culture amended with 20 ppm diesel fuel/ crude oil mixture (3:2; v/v) as carbon and energy sources

ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Szent Istvan University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Beijing

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_submitter: Peking University


ncbi_country: USA: Massachusetts

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: blood culture

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Robert Koch Institute


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Norway

ncbi_isolation_source: Human

ncbi_organism_name: Brucella melitensis

ncbi_submitter: NORWEGIAN INSTITUTE OF PUBLIC HEALTH


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Oregon State University


ncbi_country: Russia: Dagestan

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Australia: Brisbane

ncbi_isolation_source: clinical

ncbi_submitter: The University of Sydney


ncbi_country: USA: California

ncbi_isolation_source: Advanced Water Purification Facility

ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Colorado School of Mines


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Erysipelotrichaceae bacterium 3_1_53

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_organism_name: Halobacteriovorax marinus SJ

ncbi_strain_identifiers: SJ

ncbi_submitter: Wellcome Trust Sanger Institute


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: State of Palestine: Jerusalem

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Lawsonibacter asaccharolyticus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhengzhou University


ncbi_country: China: Hunan

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Central south university


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 78

ncbi_submitter: SC


ncbi_country: Canada: London

ncbi_isolation_source: intestine

ncbi_organism_name: Oxalobacter paeniformigenes

ncbi_submitter: University of Western Ontario


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Ares Genetics


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: midwestern

ncbi_isolation_source: Water from tanks in pens

ncbi_submitter: University of Nebraska-Lincoln

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Uganda


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: NCPPB 1144

ncbi_submitter: University of Exeter