ncbi_country: USA

ncbi_isolation_source: Small intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Church and Dwight


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_level: Contig

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: University of Technology Sydney


gtdb_representative: t

ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Universite Laval


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Pseudanabaena sp. M151S2SP2A07QC

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: gut (caecum)

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: North Carolina State University


ncbi_isolation_source: Food

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand

ncbi_isolation_source: roots

ncbi_organism_name: Micromonospora musae

ncbi_submitter: Japan Collection of Microorganisms, Microbe Division, RIKEN BioResources Center, Tsukuba, Japan

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: MD

ncbi_isolation_source: food product

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lactobacillus jensenii SJ-7A-US

ncbi_submitter: Broad Institute


ncbi_country: China: Hubei

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Brevibacillus parabrevis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Ireland

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Spain: Asturias

ncbi_organism_name: Pseudorhodobacter sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: intestine

ncbi_organism_name: Campylobacter mucosalis

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Italy

ncbi_organism_name: Rhodococcus sp. AG1013

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. AG1013


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_assembly_name: freshwater MAG --- Umea2_bin-1817

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: China

ncbi_isolation_source: seawater

ncbi_organism_name: SAR92 clade bacterium H231

ncbi_submitter: Shandong University Qingdao Campus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Cellvibrionales;f__Porticoccaceae;x__unclassified Porticoccaceae;x__SAR92 clade;s__SAR92 clade bacterium H231


ncbi_assembly_level: Complete Genome

ncbi_submitter: National Veterinary Research Institute (PIWET)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_isolation_source: salty lake

ncbi_organism_name: Alkalihalobacillus sp. YIM B00296

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pavia


ncbi_country: Denmark

ncbi_isolation_source: Hospital ward

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hvidovre Hospital


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Brazil: Tatui

ncbi_isolation_source: Cecum and rectal contents from Capybaras

ncbi_submitter: Brazilian Center for Research in Energy and Materials (CNPEM)


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Desulfuromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: pickle

ncbi_organism_name: Lacticaseibacillus yichunensis

ncbi_refseq_category: reference genome

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: uncultured SAR92 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Cellvibrionales;f__Porticoccaceae;x__unclassified Porticoccaceae;x__SAR92 clade;x__environmental samples;s__uncultured SAR92 cluster bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Shigella boydii

ncbi_strain_identifiers: DMB SH20032

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Fujian Agriculture and Forestry Universit


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Caballeronia novacaledonica

ncbi_submitter: Department of Engineering, Graduate School of Integrated Science and Technology, Shizuoka University


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: uncultured Undibacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: New Zealand: Taranaki

ncbi_submitter: Massey University


ncbi_strain_identifiers: UKGmR

ncbi_submitter: TU Dresden


ncbi_assembly_name: freshwater MAG --- A14_bin-2562

ncbi_isolation_source: pond

ncbi_organism_name: Candidatus Yanofskybacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;x__unclassified Candidatus Yanofskybacteria;s__Candidatus Yanofskybacteria bacterium


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_isolate: Pectobacterium polaris IPO_3720

ncbi_organism_name: Pectobacterium polaris

ncbi_strain_identifiers: Pectobacterium polaris IPO_3720

ncbi_submitter: UNIVERSITY OF HELSINKI


ncbi_country: France: Villejuif

ncbi_isolation_source: Mice - CTX treated

ncbi_organism_name: Enterococcus hirae


ncbi_country: USA

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 1997-7


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Broad Institute


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: EMG


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Enterocola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Enterocola;x__unclassified Candidatus Enterocola;s__Candidatus Enterocola sp.


ncbi_organism_name: Hydrogenophaga intermedia

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Yoonia sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_organism_name: Gemmiger formicilis


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-1007

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Rouxiella aceris

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_country: India: New Delhi

ncbi_isolation_source: air

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Regional Centre for Biotechnology


ncbi_organism_name: Streptomyces cinereoruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Brucella pecoris

ncbi_submitter: Sichuan University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_isolation_source: cold seep

ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_isolate: metabat2_6737_HOM_CTRL_hybrid.262 MAG

ncbi_organism_name: Clostridiales bacterium CHKCI006

ncbi_strain_identifiers: metabat2_6737_HOM_CTRL_hybrid.262 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Candidatus Binatus sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;x__unclassified Candidatus Binatus;s__Candidatus Binatus sp.


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNAERP


ncbi_country: Canada: Quebec

ncbi_isolation_source: dog bite

ncbi_organism_name: Lysobacteraceae bacterium NML03-0222

ncbi_submitter: National Microbiology Laboratory/ Public Health Agency of Canada


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Hangzhou

ncbi_isolation_source: wound drainage fluid

ncbi_organism_name: Raoultella ornithinolytica


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_country: Ireland

ncbi_isolation_source: salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Canada: Keats Island

ncbi_isolation_source: Ixodes angustus

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Paludibacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Kingella sp.

ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Canada: Ontario

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ministry of Health, National Public Health Laboratory


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: New Zealand

ncbi_isolation_source: low density polyethylene (LPDE) from waste management plant

ncbi_organism_name: Shewanella sp. SM78

ncbi_submitter: AgResearch


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universite de Caen


ncbi_country: Greece: Western Macedonia

ncbi_isolation_source: artisanal Greek Kefalograviera cheese

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Guangdong; Yunfu

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_country: Thailand: Phitsanulok

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kasetsart University


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Ochrobactrum sp. MYb15

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pre-capsular lymph node

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Hydrothermota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Hydrothermota;x__unclassified Candidatus Hydrothermota;s__Candidatus Hydrothermota bacterium


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan: okayama

ncbi_isolation_source: root

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: RIKEN


ncbi_organism_name: Bacteroides intestinalis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: not available

ncbi_submitter: SC


ncbi_assembly_name: Csak 2151 final contigs

ncbi_country: USA

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Cronobacter sakazakii 2151

ncbi_submitter: Cronobacter sakazakii Genome Sequencing Consortium


ncbi_isolation_source: Soil

ncbi_organism_name: Microbacterium oxydans

ncbi_submitter: University of Dundee


ncbi_country: Netherlands

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: Streptomyces bobili

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: USA: N. Brookville; Ohio

ncbi_isolation_source: shower drain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Butyribacter intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia: Moscow

ncbi_isolation_source: Municipal sewage sludge treatment plant

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: Rumen uncultured genome RUG14096

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Kosakonia radicincitans

ncbi_submitter: Institute of Biological Research Clemente Estable


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: New York City

ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium bovis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Polyangia bacterium


ncbi_organism_name: Actinomycetota bacterium


ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_organism_name: Lawsonibacter asaccharolyticus

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: University of Rhode Island

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thiodubiliella;s__Candidatus Thiodubiliella endoseptemdiera


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Peribacillus sp. NPDC097284

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: AOP7_D1_surf _bin _9

ncbi_organism_name: Providencia sp.

ncbi_strain_identifiers: AOP7_D1_surf _bin _9

ncbi_submitter: Genoscope


ncbi_organism_name: Sphingobacterium corticis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: Microbiology institute


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Brevinema sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Trinickia sp.

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_submitter: University of California, Berkeley


ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: anammox granule sludge

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Chongqing university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Japan

ncbi_isolation_source: human feces

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_country: Thailand: Samutsakorn

ncbi_isolation_source: saltern field soil

ncbi_organism_name: Streptomyces salinarius

ncbi_submitter: King Mongkut's Institue of Technology Ladkrabang


ncbi_country: Singapore

ncbi_isolation_source: wet market

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Colorado State University


ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_country: South Korea: Jeju

ncbi_isolation_source: soil

ncbi_organism_name: Neobacillus drentensis

ncbi_submitter: Rural department administration, National Institute of Agricultural Sciences


ncbi_assembly_name: Salmonella enterica CVM 43841 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Rhizobiales bacterium 39-66-18


ncbi_organism_name: Varibaculum timonense

ncbi_submitter: URMITE


ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. HMSC19B10

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Explogen LLC


ncbi_organism_name: Eikenella halliae

ncbi_submitter: EMG


ncbi_country: Germany: NRW

ncbi_isolation_source: raw milk

ncbi_organism_name: Galactobacter valiniphilus

ncbi_strain_identifiers: JZ R-35

ncbi_submitter: Universitaet Bonn


ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Agathobacter sp.


ncbi_isolate: isolate

ncbi_isolation_source: Horse

ncbi_organism_name: Brucella intermedia

ncbi_strain_identifiers: isolate

ncbi_submitter: Faculty of Health Sciences


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Soil

ncbi_organism_name: Actinoplanes nipponensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: USA

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: University of Minnesota


gtdb_type_species_of_genus: t

ncbi_country: China

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Aldersonia kunmingensis

ncbi_submitter: Northumbria University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Central Marine Fisheries Research Institute


ncbi_isolation_source: Rifle well CD01 at time point 4 / D; 5m depth; 0.2 filter

ncbi_organism_name: Tenericutes bacterium GWD2_38_27

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__unclassified Mycoplasmatota;s__Tenericutes bacterium GWD2_38_27


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Rutgers University


ncbi_country: Czech Republic: South-Moravian region

ncbi_isolation_source: genital tract swabs

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: State Veterinary Institute Prague


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: INRA


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus intestinalis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COLORADO DENVER, SCHOOL OF MEDICINE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Absicoccus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Algisphaera sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: China: Ningbo

ncbi_isolation_source: Physical

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_country: Russia: Moscow

ncbi_organism_name: Escherichia coli

ncbi_submitter: RCPCM


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Acidithiobacillus sp. IBUN Pt1247-S3

ncbi_strain_identifiers: IBUN Pt1247-S3

ncbi_submitter: NATIONAL UNIVERSITY OF COLOMBIA


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: adult feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_submitter: Lawrence Berkeley National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis;x__Bacillus subtilis subsp. subtilis str. 168


ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: Biosolid 27

ncbi_submitter: Canadian Food Inspection Agency


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Poland: Bialystok

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_isolation_source: Stool

ncbi_submitter: Toho University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: Bythopirellula sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Florida

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Italy: Tuscany

ncbi_isolation_source: total DNA from ciliate isolated from freshwater

ncbi_organism_name: Candidatus Cyrtobacter zanobii

ncbi_submitter: University of British Columbia

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Cyrtobacter;s__Candidatus Cyrtobacter zanobii


ncbi_organism_name: Phocaeicola sartorii


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: St. Louis

ncbi_isolation_source: Urinary tract

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: MI

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_submitter: Puyang Oil Field General Hospital


ncbi_organism_name: Azospirillum sp. B4

ncbi_submitter: Kazusa DNA Research Institute


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: Rumen uncultured genome RUG13733

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Streptococcus constellatus

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium japonicum

ncbi_submitter: VEIL Bradyrhizobium group


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Kitasatospora sp. NPDC088346

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Nacional de Pediatria


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Rothia sp. L_38

ncbi_submitter: JiLin Agricultural Science and Technolog

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. L_38


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Streptomyces virginiae


ncbi_organism_name: Staphylococcus sp. Mo2-1

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Megasphaera sp.


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Caldipriscus sp.

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Caldipriscota;g__Candidatus Caldipriscus;x__unclassified Candidatus Caldipriscus;s__Candidatus Caldipriscus sp.


ncbi_organism_name: Bhargavaea massiliensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Kitasatospora sp. NPDC057738


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__unclassified Actinomycetes;s__Actinobacteria bacterium BACL4 MAG-121001-bin59


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Carboxylicivirga marina

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Streptomyces sp. NPDC091377


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_country: Russia: Krasnodar Krai; Gladkovsky mud volcano

ncbi_isolation_source: pool on the surface of a mud volcano

ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Lacrimispora amygdalina

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;s__Candidatus Adlerbacteria bacterium RIFCSPHIGHO2_02_FULL_54_18


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: CAU


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: India: Sikkim; Yumthang

ncbi_isolation_source: hot spring

ncbi_organism_name: Parageobacillus yumthangensis

ncbi_submitter: sikkim university


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: BGI


ncbi_country: USA: Commercial Solvents Corporation

ncbi_isolation_source: Contaminated fungus plate

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil with plant cover day10_CT

ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Clinical sample

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Ghana: Northern region

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Noguchi Memorial Institute fir Medical Research


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India

ncbi_isolation_source: avian heart (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas gingeri

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: environment

ncbi_organism_name: Rhodoferax koreensis

ncbi_submitter: Korea University


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Japan

ncbi_isolation_source: rice field soil

ncbi_organism_name: Rhodopseudomonas palustris

ncbi_submitter: Bellevue University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: India: Chandigarh

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: Soil

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Belarus: Brest

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_isolation_source: unknown


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Spain: Asturias

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Onthenecus;s__Candidatus Onthenecus intestinigallinarum


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Sandaracinus sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S109

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S109


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: McGill University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. AM36-4AA

ncbi_submitter: BGI


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Coprobacillus sp. AF16-47


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Citrobacter sp. MGH99

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter sp. MGH99


ncbi_organism_name: Paraburkholderia caribensis

ncbi_submitter: The James Hutton Institute


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD7906

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Helicobacter pylori SA302C

ncbi_submitter: MHH


ncbi_country: China: Tianjin

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Qilu university of technology


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Finnish Food Authority


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: AAFC


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Unknown

ncbi_isolation_source: blood


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID4912

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfurobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia: Newcastle

ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterobacter asburiae


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Prevotella sp.


ncbi_country: USA: LA

ncbi_isolation_source: wound

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Mont everest moraine

ncbi_organism_name: Sphingomonas sp. S1-29

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Ghana: Korle Bu

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus UCIM6018

ncbi_submitter: Broad Institute


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avichristensenella;s__Candidatus Avichristensenella intestinipullorum


ncbi_organism_name: Streptomyces ipomoeae


ncbi_country: Philippines: Negros

ncbi_submitter: Philippine Genome Center


ncbi_country: Germany: Hamburg

ncbi_isolation_source: water rainwater-tap Botanic Garden Hamburg

ncbi_organism_name: Janthinobacterium sp. HH102

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Chester


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Cornell University


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidad de las Americas


ncbi_country: Viet Nam

ncbi_submitter: Agroscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;x__unclassified Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis complex sp. N0153


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: China CDC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Terrabacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Pseudanabaena sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: CEBITEC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: New Mexico

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers of Disease Control


ncbi_organism_name: Streptomyces sp. NPDC030592


ncbi_country: Australia: Magnetic Island; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Treponema sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: MER 10

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 69 year old woman who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Cloacibacterium normanense

ncbi_submitter: Linnaeus University


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Corynebacterium sp. HMSC06C06

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1549

ncbi_submitter: Broad Institute


ncbi_organism_name: Blautia producta


ncbi_country: India: Lonar lake

ncbi_isolation_source: saline and alkaline soil

ncbi_organism_name: Streptomyces alkaliphilus

ncbi_submitter: Nicolaus Copernicus University


ncbi_country: Ireland: Castlemaine

ncbi_isolation_source: haemolymph

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: Cefas


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Caldisericota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__environmental samples;s__uncultured Caldisericota bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: pentadecane enrichment inoculated with seawater

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: University of Califronia


ncbi_country: Switzerland

ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_country: Chile: Bahia de Concepcion

ncbi_isolation_source: Marine sediments from a bay

ncbi_organism_name: Desulfococcaceae bacterium HSG9

ncbi_submitter: Aarhus University


ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Sedimenticola;x__unclassified Sedimenticola;s__Candidatus Sedimenticola sp. (ex Thyasira tokunagai)


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Florida

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Verrucomicrobia bacterium UBA6176

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA6176


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Alkalicoccobacillus gibsonii

ncbi_submitter: Penn State


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: France: Normandy

ncbi_isolation_source: sink trap

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Cornell University


ncbi_assembly_name: Rumen uncultured genome RUG274

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_organism_name: Schumannella luteola

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured cyanobacterium


ncbi_country: Russia: Sakha (Yakutia)

ncbi_isolation_source: sputum from COVID-19 patient

ncbi_submitter: Federal State Budgetary Scientific Institution "Institute of Experimental Medicine"


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: Ruminococcus sp. AF31-8BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Yersinia pestis C1989001

ncbi_submitter: Beijing Genomics Institute


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: China: Guangzhou

ncbi_submitter: China Aricultural University


ncbi_isolate: SCLB

ncbi_organism_name: Candidatus Profftella armatura

ncbi_strain_identifiers: SCLB

ncbi_submitter: School of Life Sciences and Food Engineering

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Betaproteobacteria;o__;f__;g__Candidatus Profftella;s__Candidatus Profftella armatura

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Profftella;s__Candidatus Profftella armatura


ncbi_organism_name: bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 213

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 3061

ncbi_submitter: University of Calgary


ncbi_country: USA

ncbi_isolation_source: shipworm Bankia gouldi collected from the Newport River Estuary; Beaufort North Carolina in 1979

ncbi_organism_name: Teredinibacter turnerae T8415

ncbi_submitter: JGI


ncbi_country: Colombia: Bogota

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Paenibacillus ihbetae

ncbi_submitter: BGI


ncbi_assembly_name: Rumen uncultured genome RUG11457

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Case Western Reserve University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands: Breda

ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: unverisity medical center groningen


ncbi_country: South Korea

ncbi_isolation_source: Siniperca scherzeri

ncbi_organism_name: Sphingomonas sinipercae

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_strain_identifiers: Xc 69

ncbi_submitter: Ottawa Research and Development Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium RIFOXYC2_FULL_41_22


ncbi_organism_name: Opitutaceae bacterium TAV5


ncbi_submitter: Ministry of Agriculture and Food, Government of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_submitter: University of Surrey


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Purdue University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean

ncbi_isolation_source: basaltic crustal fluids

ncbi_organism_name: Nitrospirae bacterium JdFR-88

ncbi_submitter: University of Hawaii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium JdFR-88


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Dorea sp.

ncbi_submitter: AAFC


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: SZC

ncbi_submitter: Enze Hospital


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: High-ammonia biogas digester

ncbi_organism_name: Miniphocaeibacter halophilus

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Variovorax boronicumulans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_country: USA: New York

ncbi_isolation_source: resistant mutants selected from H37Rv parent strain

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Texas A&M University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium RIFOXYB2_FULL_41_10


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_submitter: University of California at Davis


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: India: Punjab

ncbi_isolation_source: Rice seed

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Hallella faecis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Neisseria mucosa

ncbi_submitter: University of Malaya


ncbi_country: Ireland

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_country: Spain: Madrid

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: Spain

ncbi_isolation_source: Individual compounds of essential oils

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: CAR

ncbi_submitter: Facultad de Veterinaria, Instituto Agroalimentario de Aragon (IA2)


ncbi_country: China: south-west China; Yunnan Province

ncbi_organism_name: Micrococcus endophyticus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Enterococcus faecalis SLO2C-1

ncbi_submitter: The Genome Institute


ncbi_country: Switzerland

ncbi_isolation_source: Burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Inselspital


ncbi_organism_name: Bacillus cereus

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: uncultured Nocardioides sp.


ncbi_country: China

ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Bilophila sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University College Dublin


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: USA: MI

ncbi_isolation_source: brain pigeon

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Instituto de Biotecnologia


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Paris

ncbi_isolation_source: pus

ncbi_submitter: INSERM


ncbi_country: Norway

ncbi_isolation_source: Cod

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: China: Jiangsu; Suzhou

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: D

ncbi_submitter: Nanjing university


ncbi_country: Antarctica: Western Antarctic Peninsula; King George Island.

ncbi_isolation_source: marine sponge

ncbi_organism_name: Nesterenkonia sp. E16_7

ncbi_submitter: Universidad Mayor


ncbi_isolation_source: anorectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University Hospital Muenster

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Aeromonas caviae

ncbi_strain_identifiers: VRL PW1.8

ncbi_submitter: Institute of Microbial Technology


ncbi_isolation_source: spinach


ncbi_assembly_name: IMG-taxon 2663762746 annotated assembly

ncbi_organism_name: Mameliella alba

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Candidatus Nitrospira allomarina

ncbi_strain_identifiers: VA

ncbi_submitter: Division of Microbial Ecology


ncbi_organism_name: Marinoscillum sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: India: Vellore

ncbi_isolation_source: sputum

ncbi_submitter: Biofilm and Antimicrobial Resistance Consortium of ODA receiving countries


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Africa: Pietermaritzburg

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: marine

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas aeruginosa PAO581

ncbi_submitter: Marshall University School of Medicine


ncbi_country: Chile: Santiago

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pacificimonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolate: AOP5_GZ1_surf _bin _1

ncbi_organism_name: Pseudomonas taetrolens

ncbi_strain_identifiers: AOP5_GZ1_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Patiriisocius sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Marinobacterium sp. YM272

ncbi_submitter: Zhejiang University of Technology


ncbi_organism_name: Streptomyces sp. NPDC018034

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Desulfobacterales bacterium


ncbi_organism_name: Enterobacter hormaechei subsp. oharae

ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. oharae


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_submitter: Academia Sinica


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_isolate: AOP23_AC1_coeur _bin _6

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: AOP23_AC1_coeur _bin _6


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0113R

ncbi_submitter: Broad Institute


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: China CDC


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B346;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2657245703 annotated assembly

ncbi_organism_name: Streptomyces sp. IgraMP-1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: National Research Center "Kurchatov Institute"


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: OM182 bacterium MED-G28

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;s__OM182 bacterium MED-G28


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Dehalococcoidia bacterium UBA6234

ncbi_submitter: University of Queensland


ncbi_country: Australia: Adelaide

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: The Australian Wine Research Institute


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 176 (4-3428664)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 176 (4-3428664)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Olsenella sp.


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp. OF01-18

ncbi_submitter: BGI


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Helicobacter hepaticus


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Rakuno Gakuen University


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Norway: Bergen

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Haukeland University Hospital


ncbi_country: Mediterranean Sea

ncbi_isolation_source: Sea water

ncbi_organism_name: Citromicrobium sp. RCC1897

ncbi_submitter: Xiamen University


ncbi_country: Poland

ncbi_organism_name: Providencia stuartii

ncbi_submitter: NanKai universit


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_country: Israel

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_organism_name: Methylobacter sp.


ncbi_country: Japan

ncbi_isolation_source: water samples from food factories

ncbi_organism_name: Methylobacterium brachiatum

ncbi_submitter: SciBear OU


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Vellore

ncbi_isolation_source: Respiratory specimen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College, Vellore


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Segatella copri

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: China: Beijing

ncbi_submitter: General Hospital


ncbi_organism_name: Parafannyhessea umbonata


ncbi_isolation_source: food

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Microcystis aeruginosa PCC 9432

ncbi_submitter: Genoscope CEA


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_organism_name: Streptococcus parasuis


ncbi_organism_name: Agrobacterium sp. 33MFTa1.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG055

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: South Korea: Gyeonggi-do

ncbi_isolation_source: chicken meat

ncbi_submitter: Korea University Graduate School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Italy

ncbi_isolation_source: Urine

ncbi_submitter: Roma Tre University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841


ncbi_country: United Kingdom: Great Yarmouth

ncbi_isolation_source: surface coastal seawater

ncbi_organism_name: Loktanella sp.

ncbi_submitter: Ocean university of China


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Staphylococcus aureus SA6-LAU WGS

ncbi_country: Jordan: Amman

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus SA6-LAU

ncbi_submitter: Lebanese American University


ncbi_submitter: Makerere University


ncbi_country: United Kingdom: Devon

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Lucinoma borealis)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Natto

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: National Institute of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: USA: PA

ncbi_isolation_source: porcine pig intestine small

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of Washington


ncbi_country: Spain

ncbi_isolation_source: feces

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: University of Surrey


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: society for Innovation and Development, Indian Institute of Science, Bangalore 560012


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_assembly_name: IMG-taxon 2617270883 annotated assembly

ncbi_organism_name: Pediococcus ethanolidurans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: blood

ncbi_organism_name: Faucicola atlantae

ncbi_strain_identifiers: CCUG 6415

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Sphingobacterium siyangense

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: gastric juice

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Reyranella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Lacombe

ncbi_organism_name: Alistipes sp.

ncbi_submitter: AAFC


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Tunku Abdul Rahman


ncbi_country: South Korea: Ulleung island

ncbi_isolation_source: seawater

ncbi_organism_name: Shewanella ulleungensis

ncbi_submitter: Karolinska Institutet


ncbi_country: China: Hangzhou

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: University of Manitoba


ncbi_country: Japan

ncbi_organism_name: Morganella morganii

ncbi_submitter: Toho University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Facultad de Quimica, UNAM


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: seafood

ncbi_organism_name: Vibrio parahaemolyticus S150

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S150


ncbi_assembly_name: Rumen uncultured genome RUG14584

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: EMG


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: Savannah River Site (SRS); Aiken; SC

ncbi_organism_name: Stenotrophomonas sp. MA5

ncbi_submitter: Florida A&M University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfurobacterium sp.

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Halanaerobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Bangladesh: Mymensingh

ncbi_isolation_source: Gut

ncbi_submitter: Bangladesh Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Quadram Institutte


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8890

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_organism_name: Streptomyces sp. CCNWLW237

ncbi_submitter: Northwest A&F University


ncbi_submitter: Center for Microbial Communities


ncbi_country: Austria: Vienna

ncbi_organism_name: Mycoplasma sp. 1578d

ncbi_submitter: Institute of Microbiology


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Candidatus Microsaccharimonas sp.

ncbi_submitter: EPFL

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Microsaccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Microsaccharimonas;x__unclassified Candidatus Microsaccharimonas;s__Candidatus Microsaccharimonas sp.


ncbi_organism_name: Streptomyces sp. NPDC096105


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Pusillimonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Puyang Oil Field General Hospital


ncbi_isolate: AOP42_E1_surf _bin _11

ncbi_organism_name: Leucobacter sp.

ncbi_strain_identifiers: AOP42_E1_surf _bin _11

ncbi_submitter: Genoscope


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of British Columbia