ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Center for Microbial Communities


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_level: Scaffold

ncbi_organism_name: Weissella hellenica

ncbi_submitter: Collection de l'Institut Pasteur


gtdb_representative: t

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptomyces sp. NBC_00622

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Streptomyces albus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Parafilimonas sp.

ncbi_submitter: University of Sao Paulo


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: SponGES


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Beef Patties

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Kyoto University


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU032


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Monash University


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AF19-15

ncbi_submitter: BGI


ncbi_country: China: Qingdao offshore

ncbi_isolation_source: surface seawater

ncbi_organism_name: Vibrio pelagius

ncbi_submitter: ocean university of China


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Bacillus paramobilis

ncbi_refseq_category: reference genome

ncbi_submitter: INIA


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Mahidol University


ncbi_country: South Africa: Mpumalanga

ncbi_organism_name: Bacillus anthracis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospira sp.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Italy

ncbi_isolation_source: bovine cheese blue

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_isolation_source: Fresh water

ncbi_organism_name: Campylobacter lari

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3774

ncbi_submitter: University of Queensland


ncbi_organism_name: Mycolicibacterium sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_assembly_name: Rumen uncultured genome RUG11396

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Qinghai Province

ncbi_isolation_source: rectal contents

ncbi_organism_name: Luteimonas sp. 100069

ncbi_submitter: China disease prevention and control center


ncbi_country: USA: South Dakota

ncbi_isolation_source: Bioreactor

ncbi_organism_name: Microbacterium sp. TPD7012

ncbi_submitter: MR DNA


ncbi_country: China: Shanghai

ncbi_isolation_source: meat

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Quisquiliibacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Japan: okayama

ncbi_isolation_source: root

ncbi_organism_name: Prosthecodimorpha hirschii

ncbi_submitter: RIKEN


ncbi_isolation_source: fresh water

ncbi_organism_name: Hydrogenobaculum sp. SHO

ncbi_strain_identifiers: SHO

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: South Korea

ncbi_isolation_source: Doenjang; high-salt fermented soybean paste

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Dongduk Women's University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: United Kingdom

ncbi_isolation_source: dead seal liver and kidney

ncbi_organism_name: Vagococcus fessus

ncbi_submitter: Centers for Disease Control and Prevention

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2667527392 annotated assembly

ncbi_organism_name: Herbiconiux ginsengi

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: soil

ncbi_organism_name: Pusillimonas noertemannii BS8

ncbi_submitter: LSHTM


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0354

ncbi_submitter: Broad Institute


ncbi_assembly_level: Chromosome

ncbi_organism_name: Planktothrix rubescens

ncbi_submitter: Justus Liebig Universitat


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Universidad de Chile


ncbi_country: Spain

ncbi_isolation_source: Hospital de Guadalajara (Guadalajara)

ncbi_organism_name: Escherichia coli

ncbi_submitter: CNAG-CRG


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Desulfovibrio desulfuricans

ncbi_submitter: Environmental Microbiology Lab


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Moraxella equi

ncbi_strain_identifiers: CCUG 4950

ncbi_submitter: TAILORED-Treatment project


ncbi_country: Canada: MB

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China: Nanjing

ncbi_isolation_source: urethral discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College


ncbi_isolation_source: human skin

ncbi_organism_name: Porphyromonas cangingivalis

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: tracheal secretions

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National University of Science and Technology


ncbi_organism_name: uncultured Anaerolinea sp.


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Australia: Newcastle

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Canada: Ontario;Grand River North

ncbi_isolation_source: river water

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lentilactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_isolation_source: blood

ncbi_submitter: Sun-yat Sen University


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: Urine sample

ncbi_submitter: Yangzhou University


ncbi_country: Japan

ncbi_organism_name: Cutibacterium acnes subsp. acnes

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Caulobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Technical University of Denmark


ncbi_country: Brazil: Santaluz; Bahia State

ncbi_isolation_source: granulomatous lesion

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Minas Gerais


ncbi_organism_name: Streptomyces sp. NBC_00234


ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: Osaka Institute of Public Health


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Bristol


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_assembly_name: Salmonella enterica CVM 43817 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_submitter: Provincial Hospital Affiliated to Shandong First Medical University


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: China: Guigang City; Guangxi Province

ncbi_isolation_source: stool

ncbi_submitter: SCAU


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: OR

ncbi_isolation_source: chicken breast

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. N653


ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: EMG


ncbi_country: China: Jiangsu

ncbi_isolation_source: duodenum

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: India

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Allomuricauda sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Japan: Akita

ncbi_organism_name: Pseudomonas kitaguniensis

ncbi_submitter: National Agriculture and Food Research Organization (NARO)


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Beijing Forestry University


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Mexico: Churince hydrological system; Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment from the Churince hydrological system

ncbi_organism_name: Streptomyces sp. CC71

ncbi_submitter: CINVESTAV-Langebio


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces toyocaensis

ncbi_submitter: The university of Cambridge


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Treponema succinifaciens

ncbi_submitter: EMG


ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: South Korea

ncbi_submitter: Kyungpook National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar israelensis


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Ireland

ncbi_isolation_source: Cattle/Soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_submitter: Brown University


ncbi_organism_name: Hydrogenophaga sp. T2

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Psychrobacter sp. NPDC078631

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Conexibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Oleispira sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Aichi Prefectural Tobu Livestock Hygiene Service Center


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Paenalcaligenes sp. Me52

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Aliisedimentitalea scapharcae

ncbi_submitter: The Affiliated Yantai Yuhuangding Hospital of Qingdao University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_isolate: Anabaena CCY 9910

ncbi_organism_name: Anabaena sp. CCY 9910

ncbi_strain_identifiers: Anabaena CCY 9910

ncbi_submitter: royal netherlands institute for sea research (nioz)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Anabaena;x__unclassified Anabaena;s__Anabaena sp. CCY 9910


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Edwardsbacteria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Edwardsiibacteriota;x__unclassified Candidatus Edwardsbacteria;s__Candidatus Edwardsbacteria bacterium


ncbi_isolation_source: intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Church and Dwight


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0677

ncbi_submitter: Broad Institute


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_submitter: University of Guelph


ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Granulosicoccus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Malaysia

ncbi_isolation_source: Endotracheal throat swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: China: Dongxing

ncbi_organism_name: Exiguobacterium sp. s160

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s160


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea:Jinju

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: China: Guangdong; Shanwei

ncbi_isolation_source: silt

ncbi_organism_name: Tahibacter harae

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01349

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01349


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shanghai

ncbi_isolation_source: alkaline soil

ncbi_organism_name: Psychrobacter sp. SHUES1

ncbi_submitter: East China Normal University


ncbi_isolation_source: marine sediment

ncbi_organism_name: Flexistipes sinusarabici

ncbi_submitter: University of Tehran


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_organism_name: Acidaminococcus massiliensis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: SCOPE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Kazan (Volga Region) Federal University


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_country: India: Mumbai

ncbi_submitter: Christian Medical College


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Merdibacter sp.

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean

ncbi_isolation_source: Black smoker from hydrothermal field Lucky Strike; mid-Atlantic Ridge

ncbi_organism_name: Persephonella atlantica

ncbi_submitter: Ifremer


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: Cucumber fermentation tank

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: Animal and Plant Health Agency


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Photorhabdus laumondii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Mozambique

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_country: Indian Ocean

ncbi_isolation_source: marine hydrothermal vent chimney ENVO:01000129

ncbi_organism_name: Crassaminicella indica

ncbi_submitter: Institute of Deep-Sea Science and Engineering, CAS


ncbi_organism_name: Staphylococcus capitis subsp. urealyticus

ncbi_submitter: Imperial College London


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: litter

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: LIT17 A36

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: France

ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_isolation_source: Skin sore

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_country: Tunisia: Sousse

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii


ncbi_isolation_source: Trypticase Soy Agar

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ATCC BAA1680

ncbi_submitter: Longhorn Vaccines & Diagnostics


ncbi_country: Greece: Western Macedonia

ncbi_isolation_source: artisanal Greek Kefalograviera cheese

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA4937

ncbi_submitter: University of Queensland


ncbi_country: Argentina: Tandil

ncbi_submitter: Universidad de Chile


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Pseudothioglobus singularis

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus singularis


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0034

ncbi_submitter: Broad Institute


ncbi_isolation_source: clinical material

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: United Kingdom: England

ncbi_isolation_source: Joint fluid

ncbi_submitter: University of Liverpool


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Cancer Hospital Chinese Academy of Medical Sciences, Shenzhen Center


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0021


ncbi_country: Germany

ncbi_isolation_source: nodules

ncbi_organism_name: Sinorhizobium meliloti SM11

ncbi_submitter: University of Florence


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Weissella soli


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Institute of Animal Husbandry and Veterinary, Hubei Academy of Agricultural Sciences


ncbi_country: USA: Massachusetts

ncbi_submitter: Duke University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__ant endosymbionts;g__Candidatus Blochmanniella;s__Candidatus Blochmanniella chromaiodes;x__Candidatus Blochmanniella chromaiodes str. 640


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_assembly_name: LMG 21824 type strain assembly

ncbi_organism_name: Burkholderia sp. LMG 21824

ncbi_submitter: LM-UGent


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: Citrobacter youngae

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: USA: New York

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Enterococcus sp. AZ009

ncbi_submitter: Broad Institute


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: uncultured Paenacidovorax sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_country: Pakistan

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Quaid-I-Azam University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: Netherlands: Wageningen

ncbi_organism_name: Streptacidiphilus sp. P02-A3a

ncbi_submitter: Netherlands Institute of Ecology (NIOO-KNAW)


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Dialister invisus


ncbi_organism_name: Aeromonas media

ncbi_submitter: Northumbria University


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China

ncbi_isolation_source: secretions

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Moscow

ncbi_isolation_source: lumbar liquor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pomona


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bredeney


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Rugosibacter sp.


ncbi_country: Sweden

ncbi_isolation_source: secrete

ncbi_organism_name: Mycobacterium tuberculosis BTB09-151

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Spain: Santander

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: ITACYL


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alcanivorax sp. UBA2114

ncbi_submitter: University of Queensland


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: Japan

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Holdemanella biformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_submitter: Creighton University


ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: ATCC 8480

ncbi_submitter: NIZO food research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;s__Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_01_FULL_43_120


ncbi_assembly_name: IMG-taxon 2599185355 annotated assembly

ncbi_organism_name: Burkholderia sp. NFACC33-1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Cardiff University


ncbi_isolation_source: Proximal colon


ncbi_assembly_name: freshwater MAG --- Loc090116-8m_bin-1509

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Universiteit Antwerpen


ncbi_country: Malawi


ncbi_assembly_name: freshwater MAG --- YR_bin-4384

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_assembly_name: freshwater MAG --- A14_bin-0263

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: South Africa: North West Province

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Agriculture research council


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1083

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Paraflavitalea sp. sgz302552


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-093

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: New Haven; CT

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Treponema denticola

ncbi_strain_identifiers: OMZ 852

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: Decomposed wood of Fagus sylvatica; <5 years decomposition

ncbi_organism_name: Sodalis sp. dw_96

ncbi_submitter: Czech Academy of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Bruguierivoracaceae;g__Sodalis;x__unclassified Sodalis (in: enterobacteria);s__Sodalis sp. dw_96


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Romboutsia hominis

ncbi_submitter: URMITE


ncbi_organism_name: uncultured Marvinbryantia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Sichuan

ncbi_isolation_source: water

ncbi_organism_name: Exiguobacterium sp. PFWT01

ncbi_submitter: Chengdu University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. PFWT01


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: Instituto Nacional de Salud - Peru

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Kvitko Lab


ncbi_country: USA

ncbi_isolation_source: food processing facility

ncbi_organism_name: Stenotrophomonas sp. PS02301

ncbi_submitter: Penn State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: Looe Key National Marine Sanctuary; Florida

ncbi_isolation_source: coral mucus

ncbi_organism_name: Verrucomicrobia bacterium UBA6056

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA6056


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Ponticoccus sp. SC6-15

ncbi_submitter: Shantou University


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Candidatus Pelagibacter sp. Uisw_130

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. Uisw_130


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Mesohalobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Peribacillus sp. NPDC096448

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 623

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella sp. s59033

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_submitter: DOE JGI


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Switzerland

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: USA: Riverside; Ca

ncbi_isolation_source: Nectary

ncbi_organism_name: Apilactobacillus micheneri

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1949S

ncbi_submitter: Broad Institute


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Devosia sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Columbia University Medical Center


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: Xinjiang Normal University


ncbi_organism_name: Bifidobacterium ruminantium

ncbi_submitter: Veterinary Research Institute


ncbi_submitter: Yangzhou University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: EMG


ncbi_organism_name: Oribacterium parvum

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_submitter: Adelaide Medical School


ncbi_country: China

ncbi_organism_name: Sporosarcina pasteurii

ncbi_submitter: Southeast University


ncbi_country: USA: Wyoming

ncbi_isolation_source: retail meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: UIUC


ncbi_country: USA: Dougherty; GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Paucilactobacillus nenjiangensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: India: Kolkata; Dhapa

ncbi_isolation_source: soil

ncbi_organism_name: Paraclostridium sp. AKS81

ncbi_submitter: UNIVERSITY OF CALCUTTA


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus VET0221R

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Toho University


ncbi_country: China: South sea

ncbi_isolation_source: Bottom water

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Third Institute of Oceanography, Ministry of natural resources


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: China: Ya an; Sichuan Province

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13822

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Amycolatopsis halotolerans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: rat gut

ncbi_organism_name: Peptococcaceae bacterium UBA3330

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Guangxi Medical University


ncbi_strain_identifiers: ASNER

ncbi_submitter: Yale University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;x__Candidatus Uzinura;s__Candidatus Uzinura diaspidicola;x__Candidatus Uzinura diaspidicola str. ASNER


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfurobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: France

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Sphaerochaeta sp.


ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: South Africa

ncbi_isolation_source: Leaves and stems

ncbi_organism_name: Pseudomonas sp. I3-I5

ncbi_submitter: University of Johannesburg


ncbi_organism_name: Curtobacterium sp. PhB130

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean: Lau Basin

ncbi_organism_name: Campylobacterales bacterium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Mediterraneibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Streptomyces misionensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Novosphingobium sp.


ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Sediminispirochaeta sp.


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Thalassovita sp. S70

ncbi_submitter: Shenzhen University


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: University Hospital of Larissa


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: plant tissue

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Third Institute of Oceanography


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- KT_bin-2949

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Bacillus sp. 37MA

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 37MA


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Japan:Aichi; Nagoya

ncbi_isolation_source: Nicotiana tabacum root

ncbi_organism_name: Leifsonia sp. LS1

ncbi_submitter: Laboratory of Developmental Signaling Biology, Graduate School of Bioagricultural Sciences, Nagoya University


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: USAMRD-A


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_country: Germany

ncbi_organism_name: Rodentibacter pneumotropicus

ncbi_submitter: University of Copenhagen


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA7009

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA7009


ncbi_country: Switzerland

ncbi_isolation_source: Cheese starter culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_organism_name: Streptomyces sp. NPDC006996

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T28640

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Klebsiella sp. K5-308

ncbi_submitter: Institute of Marine research


ncbi_organism_name: Brucella melitensis

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Tamlana sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Germany: Wietze

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Beijing

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Sciences


ncbi_organism_name: Stenotrophomonas sepilia

ncbi_submitter: University of Technology Sydney


ncbi_country: USA: Colorado

ncbi_isolation_source: oil and gas produced water in membrane bioreactor

ncbi_organism_name: Iodidimonas sp. MBR-14

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Segatella copri

ncbi_submitter: BGI-Shenzhen


ncbi_country: China:Fang county; Hubei province

ncbi_isolation_source: Rice wine starter

ncbi_organism_name: Weissella fangxianensis

ncbi_submitter: Hubei University of Arts and Science


ncbi_organism_name: Fructobacillus fructosus

ncbi_submitter: ghent university


ncbi_country: Turkmenistan: Askabat

ncbi_isolation_source: Desert soil

ncbi_organism_name: Saccharopolyspora aridisoli

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: WTSI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens Db11


ncbi_country: South Korea: Seoul

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yonsei University


ncbi_organism_name: Saccharopolyspora thermophila

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Shewanella fodinae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ornithinimicrobium sp. LYQ103

ncbi_submitter: China CDC


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_assembly_name: Rumen uncultured genome RUG11789

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Russia

ncbi_isolation_source: aborted fetus

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: Federal Research Center of Virology and Microbiology, Branch in Saratov


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Anaerocolumna sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Moraxella sp.

ncbi_submitter: EMG


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Streptomyces sp. NBC_01201

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia

ncbi_isolation_source: Uterus

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Aliarcobacter lanthieri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: China:Jiadengyu national forest park

ncbi_isolation_source: soil sample

ncbi_organism_name: Ornithinimicrobium pratense

ncbi_submitter: Biotechnology Research Institute


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Capnocytophaga haemolytica


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: AAFC


ncbi_country: Chile: Calama

ncbi_isolation_source: soil from a culture of crop

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Universidad Arturo Prat


ncbi_country: Belarus: Gomel

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-12554

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean

ncbi_isolation_source: Northeast pacific open ocean

ncbi_organism_name: Candidatus Synchoanobacter obligatus

ncbi_submitter: Monterey Bay Aquarium Research Instute

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Comchoanobacterales;f__Candidatus Comchoanobacteraceae;g__Candidatus Synchoanobacter;s__Candidatus Synchoanobacter obligatus


ncbi_country: Austria: Upper Austria; Linz

ncbi_strain_identifiers: KpPA

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom

ncbi_organism_name: Anaerostipes hadrus


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptomyces sp. NPDC101151

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: Synechococcus sp. 'PEA 65AY6A-5F PE A'

ncbi_strain_identifiers: PEA 65AY6A-5F PE A

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Synechococcaceae;g__Synechococcus;x__unclassified Synechococcus;s__Synechococcus sp. 'PEA 65AY6A-5F PE A'


ncbi_organism_name: Campylobacter coli

ncbi_submitter: USDA


ncbi_organism_name: Pseudomonas syringae pv. aptata

ncbi_submitter: University of Belgrade, Faculty of Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aptata


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Agroscope


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_organism_name: Halopseudomonas yangmingensis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Actinoplanes sichuanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_country: USA: CA

ncbi_isolation_source: water

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Parvimonas micra

ncbi_submitter: China CDC


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: University of Birmingham


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Myroides odoratus

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: Gladstone Institutes


ncbi_country: China: Xi an; Shanxi Province

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces roseifaciens

ncbi_submitter: Institute of Biology Leiden


ncbi_country: Mexico: Mexico City

ncbi_organism_name: Mycobacterium lepraemurium

ncbi_strain_identifiers: Hawaii

ncbi_submitter: Ecole Polytechnique Federale de Lausanne


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_isolation_source: anal swab

ncbi_submitter: China Agricultural University


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Portugal: North and Centre

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy, University of Porto


ncbi_isolation_source: not available: to be reported later


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bradyrhizobium oligotrophicum

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: Jeotgalicoccus sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: India: Chilika

ncbi_isolation_source: root tissues

ncbi_organism_name: Mangrovibacter phragmitis

ncbi_submitter: Wetland Research and Training Centre


ncbi_organism_name: Vagococcus lutrae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Norway

ncbi_isolation_source: raw chicken

ncbi_organism_name: Pseudomonas sp. MF6751

ncbi_submitter: Nofima


ncbi_country: USA: Florence; South Carolina

ncbi_organism_name: Herbaspirillum sp. 1130


ncbi_assembly_name: PsittaciChina1.0 for CB3

ncbi_country: China: Hubei

ncbi_isolation_source: the spleens of the free-living sparrow

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: BGI-TJ


ncbi_country: Spain: Madrid

ncbi_isolation_source: Human gut

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centro Nacional de Biotecnologia-CSIC


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Nocardioides albus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_organism_name: Lactobacillus hominis


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: RMIT University


ncbi_organism_name: Salaquimonas sp.

ncbi_submitter: Rutgers University


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Actinobacillus porcitonsillarum

ncbi_submitter: EMG


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: South Africa: Westen Cape

ncbi_isolation_source: Paediatric ICU

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Phycisphaerales bacterium


ncbi_assembly_name: freshwater MAG --- Ki3-D3_bin-0145

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: INRA


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella quasivariicola

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Denmark: Hellerup

ncbi_isolation_source: Coastal water

ncbi_organism_name: Aliivibrio sp. S10_S31

ncbi_submitter: DTU


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Anaerococcus vaginalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Zouves Foundation for Reproductive Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V40_P2S30T141

ncbi_submitter: Instituto de ecologia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: France

ncbi_isolation_source: Prepared meat meal

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Alistipes onderdonkii


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Piotr Lukasik


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Luteimonas panaciterrae

ncbi_strain_identifiers: Gsoil 068

ncbi_submitter: Beijing Institute of Technology


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: USA: NY

ncbi_isolation_source: intestine (Canis lupus)

ncbi_submitter: FDA/CFSAN


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Morganella morganii

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Sichuan University


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Spartobacteria bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Streptococcus agalactiae FSL C1-487

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0253R

ncbi_submitter: Broad Institute


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Canada

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Brazil

ncbi_organism_name: Vibrio fluvialis 560

ncbi_submitter: Rede Paraense de genômica e proteômica


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: USDA-ARS 2214

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: United Kingdom

ncbi_isolation_source: cecum

ncbi_organism_name: Pseudoflavonifractor capillosus

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang University School of Medicine


ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Peptoniphilus sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: C1398 mutant T2

ncbi_submitter: Peking University People's hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriia bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_organism_name: Escherichia sp. MOD1-EC2449

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Azotobacter chroococcum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SCOA6012

ncbi_submitter: Broad Institute


ncbi_organism_name: Paenibacillus sp. FSL R7-0048

ncbi_submitter: Penn State


ncbi_country: USA: MD

ncbi_isolation_source: raw cut vegetable

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Providencia vermicola

ncbi_submitter: the seqafrica consortium


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Gammaproteobacteria bacterium UBA4433

ncbi_submitter: University of Queensland


ncbi_country: Germany: Dresden

ncbi_organism_name: Wohlfahrtiimonas chitiniclastica

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Ascidiimonas aurantiaca

ncbi_submitter: Ningbo University


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Springfield

ncbi_isolation_source: indoor dust from athletic faciility office

ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: Northwestern University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: Caecum

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli KTE175


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Candidatus Sulfopaludibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Hengyang

ncbi_isolation_source: Liver puncture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: EMG


ncbi_country: Pakistan: Mithi

ncbi_isolation_source: Plant Root

ncbi_organism_name: Niallia circulans

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: USA: Chicago

ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: University of Chicago


ncbi_country: Romania: Bucharest

ncbi_isolation_source: Enviromental

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_organism_name: Dyella sp.

ncbi_submitter: University of Sao Paulo


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: sediment trap from marine abyssalpelagic zone

ncbi_organism_name: Idiomarina sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Canada: Ontario

ncbi_isolation_source: plant matter [ENVO:01001121]

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: France

ncbi_isolation_source: lymph node

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Veterinary Research Institute


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Fudan University Huashan Hospital


ncbi_organism_name: Sinorhizobium meliloti 2011

ncbi_submitter: LIPM-INRA/CNRS


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: Belgium

ncbi_isolation_source: sourdough; manufactured with wheat; rye and spelt flour

ncbi_organism_name: Levilactobacillus namurensis DSM 19117

ncbi_submitter: Shanghai Majorbio


ncbi_country: Mexico

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium NK4A144

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Translational Health Science and Technology Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Paenibacillus endophyticus

ncbi_strain_identifiers: CECT 8234


ncbi_country: Australia: Black Mountain; Canberra; ACT

ncbi_isolation_source: plant root nodule

ncbi_organism_name: Bradyrhizobium genosp. L

ncbi_submitter: Universite Claude Bernard - Lyon 1


ncbi_country: United Kingdom: Swillington; West Yorkshire

ncbi_organism_name: Pseudomonas syringae pv. philadelphi

ncbi_strain_identifiers: ICMP 8903

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. philadelphi

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: USA: Schaumburg; Illinois

ncbi_isolation_source: sink

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oxford


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Indian Ocean: Northwest Indian Ocean; Tianxiu hydrothermal vent

ncbi_isolation_source: sulfide from Tianxiu hydrothermal vents

ncbi_organism_name: Halomonas sp. MCCC 1A17488

ncbi_submitter: The Third Institute of Oceanography, Ministry of Natural Resources of PR China


ncbi_organism_name: uncultured Bergeyella sp.