ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avichristensenella;s__Candidatus Avichristensenella intestinipullorum


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


gtdb_representative: t

ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Northeastern University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Lactiplantibacillus plantarum subsp. plantarum

ncbi_submitter: Gradiant Bioconvergence


ncbi_country: USA: MD

ncbi_isolation_source: food product

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: USA: Walter Reed Army Medical Center

ncbi_isolation_source: warwound (surv)

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Miami University


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Mesoflavibacter profundi

ncbi_submitter: Tang lab


ncbi_country: USA

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: wound swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: peritoneal cavity

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of California Riverside


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Veillonella atypica ACS-134-V-Col7a

ncbi_submitter: J. Craig Venter Institute


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: France

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: Medicago Hapmap Project

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus epidermidis ATCC 12228

ncbi_submitter: Signature Science, LLC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: Rumen uncultured genome RUG12241

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: New Zealand: Manawatu

ncbi_isolation_source: Recto-anal Mucosal Swab (RAMS)

ncbi_submitter: mEpilab, Massey University


ncbi_organism_name: Kingella oralis

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: Food

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Iran: Tehran

ncbi_isolation_source: groundwater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Italy: Emilia Romagna; Casola Valsenio

ncbi_organism_name: Priestia sp. OVL9

ncbi_submitter: University of Florence


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: urine

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprococcus catus


ncbi_submitter: National Institute for Communicable Disease


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 429

ncbi_submitter: SC


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: IL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Canada: Quebec

ncbi_isolation_source: Slaughterhouse-environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Tamazight Cherifi's shared submissions


ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Poland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: University of Queensland


ncbi_organism_name: Maribacter sp. IgM3_T14_3

ncbi_submitter: Technical University of Denmark (DTU)


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_country: China

ncbi_organism_name: Flavobacterium sp. J49

ncbi_submitter: Shandong Uniwersity at Weihai


ncbi_assembly_name: freshwater MAG --- Loclat_bin-11825

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Aalborg University


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: sputum

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Neisseria sp.


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Peribacillus sp. YIM B13472

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Peribacillus;x__unclassified Peribacillus;s__Peribacillus sp. YIM B13472


ncbi_isolate: AOP5_CZ1_surf _bin _23

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP5_CZ1_surf _bin _23

ncbi_submitter: Genoscope


ncbi_organism_name: Streptomyces sp. NPDC057705

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Pseudoalteromonas sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Sarcina ventriculi


ncbi_organism_name: Bacillus mobilis


ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: E

ncbi_isolate: E

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: E

ncbi_submitter: DTU


ncbi_country: India

ncbi_isolation_source: intestine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Neobittarella (ex Bilen et al. 2018);s__Neobittarella massiliensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Neobittarella (ex Bilen et al. 2018);s__Neobittarella massiliensis (ex Bilen et al. 2018)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Candidatus Liberibacter brunswickensis

ncbi_refseq_category: reference genome

ncbi_submitter: Department of Jobs, Precincts and Regions


ncbi_assembly_name: Rumen uncultured genome RUG11615

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Canada: Prince Edward Island

ncbi_isolation_source: urine

ncbi_organism_name: Brevibacterium ravenspurgense

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Microgenomates bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Candidatus Microgenomates;s__Candidatus Microgenomates bacterium


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Larkinella rosea

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: University of Chicago


ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_country: Canada

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: USFDA


ncbi_organism_name: Citrobacter sp. RHBSTW-00107

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: United Kingdom: Taunton

ncbi_isolation_source: stool

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O127:H6;x__Escherichia coli O127:H6 str. E2348/69;x__Escherichia coli O127:H6 str. E2348/69 substr. CVDNalr


ncbi_country: Poland: Gdynia

ncbi_organism_name: Pseudomonas alloputida

ncbi_submitter: National Medicines Institute


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Marivivens sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: South Africa

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_country: China: Shandong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom:England


ncbi_isolation_source: lake water

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: PA

ncbi_isolation_source: fecal cow (Bos taurus)

ncbi_submitter: FDA/CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Korea

ncbi_isolation_source: Isolated on marine agar

ncbi_organism_name: Algoriphagus mannitolivorans DSM 15301

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus;s__Algoriphagus mannitolivorans;x__Algoriphagus mannitolivorans DSM 15301


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Mycobacterium sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Cold smoked salmon dry salted

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_country: China: Hubei

ncbi_isolation_source: Shellfish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: soft tissue (leg)

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Georgia


ncbi_country: Bangladesh: Mymensingh

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Bangladesh Agricultural University


ncbi_country: Canada: Manitoba

ncbi_isolation_source: Foot

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Passaging

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnobacterium sp.


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: Sphingomonas sp. DC5200-3

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Mexico: Puebla

ncbi_isolation_source: Donor s stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Benemerita Universidad Autonoma de Puebla


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: Nonomuraea africana

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_organism_name: Neisseria sp. HMSC072B12

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Fukushima university


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Food Associated Environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Thomasclavelia cocleata


ncbi_organism_name: Xanthomonas hortorum pv. pelargonii


ncbi_country: Canada: Nova Scotia

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Tetragenococcus koreensis

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_organism_name: Clostridioides difficile P13

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Serratia sp. CY82380

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY82380


ncbi_organism_name: Saccharomonospora sp. NPDC006951


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Paris-Sud


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_assembly_level: Chromosome

ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: laboratory derived transposant

ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: China: Beijing

ncbi_isolation_source: Dental Plaque (Non carious)

ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: SC


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- Umea1p2_bin-1005

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx22086

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: NNEfa 3118


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: uncultured Geminicoccaceae bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. 382A5

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 382A5


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_country: USA: White Oak River estuary; North Carolina; USA

ncbi_isolation_source: estuarine anaerobic sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stanford University


ncbi_submitter: Colorado State University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Candidatus Ornithospirochaeta sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;f__Spirochaetaceae;x__Spirochaetaceae incertae sedis;g__Candidatus Ornithospirochaeta;x__unclassified Candidatus Ornithospirochaeta;s__Candidatus Ornithospirochaeta sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Department of biology, School of science, KMITL, Bangkok, Thailand


ncbi_isolation_source: cold seep

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: CHINESE ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Caecum

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Italy

ncbi_isolation_source: oropharyngeal swab

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: Mozambique

ncbi_isolation_source: stool sample


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 1 d SRT; 55C; pH 5.0

ncbi_organism_name: Acetobacter peroxydans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Mecat2 v. JAN-2020

ncbi_country: Saudi Arabia: Al-Kharj

ncbi_isolation_source: kidney

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: King Abdulaziz City for Science and Technology


ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Caulobacteraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Stenotrophomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Mediterranean Sea

ncbi_isolation_source: oysters; cultured off Spanish Mediterranean coast

ncbi_organism_name: Roseibium album

ncbi_strain_identifiers: CECT 5094

ncbi_submitter: UVEG


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Pakistan: Faisalabad

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Mycobacteriales bacterium


ncbi_country: USA: South

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_country: Bangladesh: Chittagong

ncbi_isolation_source: wastewater

ncbi_submitter: Bangladesh Council of Scientific and Industrial Research (BCSIR)


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Hong Kong

ncbi_isolation_source: marine sediment

ncbi_organism_name: Escherichia sp. E4930

ncbi_submitter: The Hong Kong University of Science and Technology


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: metagenome

ncbi_organism_name: Succinivibrio dextrinosolvens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Paris

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Panama: Bocas del Toro; Inner Solarte

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Stony Brook University


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: BGI


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Moldova

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1532 from squamous cell carcinomas patient MST015

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Connecticut

ncbi_organism_name: Brucella melitensis

ncbi_submitter: µFORGE


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Qingdao Agriculture University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Citrobacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: The University of Queensland


ncbi_country: South Korea: Goraebul beach

ncbi_organism_name: Olleya aquimaris

ncbi_submitter: Dong-A University


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Bacillus bombysepticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Phaeovulum sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: EMG


ncbi_organism_name: butyrate-producing bacterium A2-232

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: WHT

ncbi_submitter: Enze Hospital


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Panjin oilfield; Liaoning Province

ncbi_isolation_source: Oil-contaminated soil

ncbi_organism_name: Sphingomonas oleivorans

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Sweden

ncbi_submitter: Uppsala University


ncbi_organism_name: Marivita sp.

ncbi_submitter: Yantai University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: raw meat-based diets for companion animals

ncbi_submitter: University of Zurich


gtdb_type_species_of_genus: t

ncbi_organism_name: Xylocopilactobacillus apis

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: CAPSULE

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- Ki1-0-7m_bin-0073

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: China: Beijing

ncbi_isolation_source: sediment

ncbi_organism_name: Sediminibacterium salmoneum NBRC 103935

ncbi_submitter: INGEBI-CONICET


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Pogonocherus hispidulus


ncbi_assembly_name: IMG-taxon 2724679732 annotated assembly

ncbi_organism_name: Neorhodopirellula lusitana

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG14713

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Streptomyces sp. NPDC059101

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Serratia nevei

ncbi_submitter: McMaster University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Megasphaera sp.


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Romboutsia timonensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin103

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: KAP bin103

ncbi_submitter: Monash University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_country: China: Sichuan

ncbi_organism_name: Enterobacter mori

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Ontario

ncbi_isolation_source: sewage sludge

ncbi_submitter: Oak Ridge National Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Pseudobacteroides;s__Pseudobacteroides cellulosolvens;x__Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Geobacillus thermoleovorans

ncbi_submitter: Jiangsu Normal University


ncbi_submitter: University of the Ryukyus


ncbi_organism_name: Chitinophaga sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom: White Horse Hill (trap soil); Wiltshire

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 648901 6-18


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_country: Canada: Calgary; Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: ANIMAL-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20090530


ncbi_organism_name: Streptomyces sp. NPDC005574

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: P043G W

ncbi_submitter: Imperial College London


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Novosphingobium sp. NRRL B-2648

ncbi_strain_identifiers: NRRL B-2648

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Klebsiella variicola

ncbi_strain_identifiers: AC CHC

ncbi_submitter: UFPR


ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseibium sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: WA

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Washington


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chulalongkorn University


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_country: France

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: patient

ncbi_submitter: Kingston University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Gardnerella;s__Gardnerella vaginalis;x__Gardnerella vaginalis ATCC 14018 = JCM 11026


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_country: Canada: Sainte-Clotide-de-Chateauguay

ncbi_organism_name: Wolbachia endosymbiont of Listronotus oregonensis

ncbi_submitter: Agriculture Agri-food Canada


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: cold seep

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Paenarthrobacter nicotinovorans

ncbi_submitter: North Carolina State University


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_4 depth 0-3 cm

ncbi_organism_name: Candidatus Fermentibacterota bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;x__unclassified Candidatus Fermentibacterota;s__Candidatus Fermentibacterota bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Rhodospirillaceae bacterium TMED140

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Listeria swaminathanii

ncbi_submitter: University of Tennessee


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Colicola caccequi

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Candidatus Colicola;s__Candidatus Colicola caccequi


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter amalonaticus


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Bulgaria

ncbi_isolation_source: Central venous catheter tip

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Antwerpen


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ballast tank

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Shandong university


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_submitter: Quadram Institutte


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D8_bin-1573

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aptata;x__Pseudomonas syringae pv. aptata str. DSM 50252


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: USA: Oregon

ncbi_isolation_source: algal mat from Kah-nee-tah hot spring

ncbi_organism_name: Isosphaera pallida ATCC 43644

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Isosphaerales;f__Isosphaeraceae;g__Isosphaera;s__Isosphaera pallida;x__Isosphaera pallida ATCC 43644


ncbi_organism_name: Halanaerobium congolense

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: food

ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China

ncbi_isolation_source: gastric juice

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_country: Puerto Rico: Carolina

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Paenibacillus sp. FSL H7-0350

ncbi_submitter: Penn State


ncbi_country: Paraguay: Villeta

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- Loclat_bin-15745

ncbi_submitter: BILS


ncbi_submitter: Chirstian Medical College


ncbi_organism_name: Methylobacillus sp. Pita1

ncbi_submitter: IBPM RAS


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Negativibacillus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__unclassified Negativibacillus;s__Negativibacillus sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Anaplasma ovis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Enterococcus sp. AZ162

ncbi_submitter: Broad Institute


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Holophagae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: Faeces

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptomyces sp. NPDC101171

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidaminococcus intestini


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Salmonella sp. SAL04182

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_organism_name: Leclercia sp. M-A074-M

ncbi_submitter: Institut Pasteur


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Photorhabdus sp. RM322S

ncbi_submitter: University of Neuchatel


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Tenacibaculum maritimum NCIMB 2154

ncbi_strain_identifiers: NCIMB 2154

ncbi_submitter: The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum;s__Tenacibaculum maritimum;x__Tenacibaculum maritimum NCIMB 2154


ncbi_organism_name: Providencia sp. 2024EL-00732

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: Turkey: Ankara

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: Frass

ncbi_organism_name: Pseudomonas sp. S36

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: FMVZ-USP UPEC V2-6

ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: UTI

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: UPEC V2-6

ncbi_submitter: FAPESP


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 333

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_submitter: Institute of Marine research


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Brevundimonas diminuta


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Pseudomonas putida


ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Brucella intermedia LMG 3301

ncbi_submitter: Virginia Bioinformatics Institute


ncbi_country: Bangladesh

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Divison of Bacterial Diseases, Centers for Disease Control


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Salmonella enterica


ncbi_country: Eritrea

ncbi_organism_name: Mesorhizobium sp. WSM3862

ncbi_submitter: Curtin University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Ottawa Research and Development Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Curtobacterium sp. 260

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG14794

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Candidatus Egerieicola pullicola

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Egerieicola;s__Candidatus Egerieicola pullicola


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Lake Washington

ncbi_organism_name: Chryseobacterium sp. 52


ncbi_country: USA

ncbi_isolation_source: Full-scale methanogenic bioreactor treating purified terephthalic acid process wastewater

ncbi_organism_name: Pelotomaculum sp. PtaB.Bin013

ncbi_submitter: University of Illinois


ncbi_isolate: XDR-PA

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Brazil: Hospital Universitario de Brasilia; Brasilia-DF

ncbi_isolation_source: tracheal aspiration

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Brasilia


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; time zero; i.e. control

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Institute of Marine Science


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Academia Sinica


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: France

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides salyersiae;x__Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sobrinus TCI-376

ncbi_submitter: JCVI


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Institute of Microbiology


ncbi_isolate: Psychrobacter urativorans ACAM311

ncbi_isolation_source: soil

ncbi_organism_name: Psychrobacter urativorans

ncbi_strain_identifiers: Psychrobacter urativorans ACAM311

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oxalobacter sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_country: Australia

ncbi_isolation_source: BHI

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Griffith University


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium longum subsp. suis

ncbi_submitter: University of Parma


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Herbinix luporum

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: final product sale animal origin

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Coraliomargarita sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA: UT; Canyonlands National Park

ncbi_isolation_source: Chitin enrichment of biocrust soil

ncbi_organism_name: Actinosynnema sp. ALI-1.44

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China

ncbi_organism_name: Nocardioides sp. CGMCC 1.13656

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Sphingopyxis panaciterrulae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Patescibacteria group bacterium UBA6241

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA6241


ncbi_country: Peru

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Besancon

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_isolation_source: Environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Virgibacillus sp. 7505

ncbi_submitter: Bielefeld University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Pernambuco

ncbi_isolation_source: stem

ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: Embrapa Agrobiologia


ncbi_country: Lebanon

ncbi_isolation_source: Fresh Produce 3

ncbi_submitter: University of Wyoming


ncbi_country: China: Guangdong

ncbi_submitter: China Agricultural University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: St. Louis

ncbi_isolation_source: Connective tissue

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Bacillus sp. z60-10

ncbi_submitter: The Third Institute of Oceanography,

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. z60-10


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 947299

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: New York; Ithaca

ncbi_isolation_source: leaf samples

ncbi_organism_name: Curtobacterium sp. PsM8

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Mesoflavibacter profundi

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Streptomyces phyllanthi

ncbi_strain_identifiers: TISTR 2346

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Paraperlucidibaca sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Qujing Normal University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: South Africa: Prince Cyril Zulu CDC

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0081

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella sp. NW201

ncbi_submitter: Sichuan University


ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Umezawaea sp. Da 62-37

ncbi_submitter: Ivan Franko National University of Lviv


ncbi_country: Australia

ncbi_organism_name: Klebsiella africana

ncbi_submitter: Monash University


ncbi_country: Japan

ncbi_isolation_source: This BioSample is a composited single-cell amplified genome (CoSAG) obtained by integrating the following multiple MDA SAG BioSamples: SAMN23498476; SAMN23498477; SAMN23498478; SAMN24966438; SAMN23498479

ncbi_submitter: bitBiome, Inc.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Coprococcus comes

ncbi_submitter: EMG


ncbi_isolation_source: Dual-strain biofilm on Detroit 562 cells

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Emory University


ncbi_country: Belgium: Ghent

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: ANIWHA


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: James Cook University


ncbi_isolation_source: Commerically purchased yogurt starter culture; sequenced from 50 sorted cells

ncbi_organism_name: Lactobacillus acidophilus CFH

ncbi_strain_identifiers: CFH

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: USA: New York State

ncbi_isolation_source: Black Creek Park

ncbi_organism_name: Enterobacteriaceae bacterium RIT691

ncbi_submitter: Rochester Institute of Technology


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil

ncbi_isolation_source: spleen

ncbi_organism_name: Francisella orientalis

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: FL

ncbi_isolation_source: feces calf

ncbi_submitter: US Food and Drug Administration


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halomonas sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium


ncbi_country: Germany: Berlin

ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus canis

ncbi_submitter: FU berlin


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Zobellia uliginosa

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: lactic starter

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_isolation_source: Japanese traditional pickle sunki

ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii

ncbi_strain_identifiers: NRIC 0767

ncbi_submitter: Meiji Co., Ltd


ncbi_country: USA: Davis; CA

ncbi_isolation_source: Drosophila suzukii larvae

ncbi_organism_name: Tatumella sp. UCD-D_suzukii

ncbi_submitter: UC Davis


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Ludwik Rydygier Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Torun


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Shewanella indica

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: USA: Blacksburg

ncbi_isolation_source: Respiratory tract exudate

ncbi_organism_name: [Haemophilus] felis

ncbi_submitter: TAILORED-Treatment project


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Sydney


ncbi_country: Australia: Victoria; Corner Inlet

ncbi_submitter: Federation University Australia


ncbi_country: Finland: Helsinki

ncbi_isolation_source: Processing plant

ncbi_organism_name: Leuconostoc gelidum subsp. gelidum

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;x__Leuconostoc gelidum group;s__Leuconostoc gelidum;sb__Leuconostoc gelidum subsp. gelidum


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_country: Georgia: Tbilisi

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Eliava IBMV


ncbi_organism_name: Clostridium beijerinckii


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Salmonella sp. NW445

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Purdue University


ncbi_country: China: Shandong

ncbi_isolation_source: hospital

ncbi_submitter: Affiliated Hospital of Jining Medical University


ncbi_country: USA

ncbi_submitter: CDC


ncbi_country: Costa Rica: Golfo Dulce Oxygen minimum zone

ncbi_isolation_source: seawater

ncbi_organism_name: Methylococcales bacterium OPU3_GD_OMZ

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG11713

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Providencia zhejiangensis

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: University of Chicago


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: Laboratory

ncbi_organism_name: Streptomyces clavuligerus

ncbi_submitter: John Innes Centre


ncbi_country: Italy

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University of Parma


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Switzerland: Aargau

ncbi_isolation_source: rectal faecal swab

ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: University of Bern


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Hoylesella buccalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella sp. CQ24WZ0631SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces virginiae


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__bacterium (Candidatus Howlettbacteria) CG_4_9_14_3_um_filter_37_10


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Caulobacteraceae bacterium


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: Leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Basel


ncbi_assembly_name: Providencia heimbachae

ncbi_organism_name: Providencia heimbachae

ncbi_submitter: URMITE


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Miltoncostaeales bacterium

ncbi_submitter: Stanford University


ncbi_assembly_name: Pseudomonas stutzeri GOM4

ncbi_country: Mexico: Gulf of Mexico

ncbi_isolation_source: sea water ENVO:00002149

ncbi_organism_name: Stutzerimonas chloritidismutans

ncbi_submitter: Consortium for the Investigation of Gulf of Mexico (CIGOM)


ncbi_country: USA: California; Middletown

ncbi_organism_name: Rhodovulum sp.

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Viet Nam

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli 909945-2

ncbi_submitter: Washington University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA17484

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Sphingobium sp. UBA3351

ncbi_submitter: University of Queensland


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Netherlands

ncbi_isolation_source: Packed-bed column with anaerobic sediment from the Rhine River near Wageningen; The Netherlands and ground anaerobic granular sludge from a sugar refinery in Centrale Suiker Maatschappij; Breda; The Netherlands

ncbi_organism_name: Dehalobacter restrictus DSM 9455

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: MidWest; broiler breeder farm 8

ncbi_isolation_source: Environmental bootie

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Germany

ncbi_organism_name: Limnobacter thiooxidans


ncbi_country: South Africa: Western Cape

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Syntrophomonas palmitatica JCM 14374

ncbi_submitter: The University of Tokyo


ncbi_country: Kosovo

ncbi_isolation_source: stray fox fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_country: United Kingdom: Newcastle

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux


ncbi_isolation_source: soil

ncbi_organism_name: Microvirga zambiensis WSM3693

ncbi_submitter: Seoul Women's University


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0045

ncbi_submitter: Broad Institute


ncbi_country: China: Shiling

ncbi_isolation_source: Tobacco roots

ncbi_organism_name: Umezawaea endophytica

ncbi_submitter: Ivan Franko National University of Lviv


ncbi_country: Nigeria

ncbi_isolation_source: pleural aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Cepheid


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_country: Malaysia

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Malaya


ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Italy

ncbi_isolation_source: Silage Feed

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: China

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Harbin Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_submitter: US FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 4b;x__Listeria monocytogenes serotype 4bV str. LS645


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Savoie region; French Alps

ncbi_organism_name: Mycoplasma feriruminatoris

ncbi_submitter: INRAE Univ Bordeaux


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: China: Nanchang City; Jiangxi Province

ncbi_isolation_source: soil around the root of Dongxiang wild rice

ncbi_organism_name: Burkholderia sp. HAN2018

ncbi_submitter: Huazhong Agriculture University


ncbi_organism_name: Bacteroides clarus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: fermented sausages

ncbi_organism_name: Weissella halotolerans DSM 20190

ncbi_submitter: Shanghai Majorbio


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: L-X

ncbi_submitter: IEM RAMS


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B296;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Pseudomonas sp. NC26

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V17_P4S1T151

ncbi_submitter: Instituto de ecologia


ncbi_assembly_name: Brucella abortus 401

ncbi_country: Russia

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Reseach Institute