ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Brazil: Blumenau

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: South Korea

ncbi_isolation_source: water

ncbi_organism_name: Janthinobacterium sp. SUN137

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Francisella sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Bacillus safensis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: DTU Food


ncbi_country: USA: Louisville; KY

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Broad Institute


ncbi_organism_name: Angelakisella sp.


ncbi_organism_name: Streptomyces sp. NPDC001982

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Pseudanabaenaceae cyanobacterium SKYG29

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: CAU


ncbi_country: USA

ncbi_organism_name: Escherichia coli


ncbi_country: France

ncbi_isolation_source: wheat and rye sourdough

ncbi_organism_name: Leuconostoc citreum

ncbi_strain_identifiers: LBAE H6

ncbi_submitter: Brigham Young University


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1184


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Streptomyces rochei


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany

ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_country: China: Shaanxi

ncbi_isolation_source: chicken cloacal swab

ncbi_submitter: China Agricultural University


ncbi_country: Poland

ncbi_organism_name: Citrobacter sp. wls716

ncbi_submitter: NanKai universit


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Serratia nematodiphila

ncbi_submitter: McMaster University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Dialister sp.


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Cutaneous biopsy

ncbi_organism_name: Mycobacterium ulcerans

ncbi_submitter: URMITE


ncbi_organism_name: Methylorubrum suomiense

ncbi_refseq_category: reference genome

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Cadiz


ncbi_assembly_name: Ec46A_S2 MIRA assembly

ncbi_organism_name: Escherichia coli

ncbi_submitter: CGS-GL


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium


ncbi_submitter: Huzhou CDC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Neglectibacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: ear of a cat

ncbi_organism_name: Corynebacterium sp. LK22

ncbi_submitter: UPenn


ncbi_submitter: Emory University School of Medicine


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Venezuela

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR5890

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: Norway

ncbi_isolation_source: dairy

ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Russia: Baikal Lake region; Siberia

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium japonicum

ncbi_submitter: ARRIAM


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China

ncbi_organism_name: Vibrio marisflavi CECT 7928

ncbi_submitter: University of Valencia, Spain


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Halobacteriovorax sp. RT-1-2

ncbi_submitter: Shandong University at Weihai


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Christian Medical College


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: EMG


ncbi_isolation_source: meibomian gland content

ncbi_organism_name: Cutibacterium modestum

ncbi_submitter: RIKEN BioResource Research Center


ncbi_country: Italy

ncbi_isolation_source: broncoalveolar lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Crew Resupply Vehicle

ncbi_isolation_source: CRV environmental surface

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Caulobacter sp.

ncbi_submitter: UNESP-FCAV


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_country: China: Nantong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jiangsu Provincial Center for Disease Prevention and Control,China


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: Belgium

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Health Research Institutes


ncbi_country: Japan

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Yonsei University


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Bacillus sp. ISL-53

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ISL-53


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_submitter: Corporacion para la Investigacion de la Corrosion


ncbi_assembly_name: SOAPdenovo v1.06

ncbi_country: Egypt

ncbi_isolation_source: desert soil

ncbi_organism_name: Nocardiopsis alkaliphila YIM 80379

ncbi_submitter: Yunnan Institute of Microbiology, Yunnan University


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: North West University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_isolation_source: Final carcass

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_level: Chromosome

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Ryaniibacteriota;s__Candidatus Ryanbacteria bacterium RIFCSPHIGHO2_12_FULL_44_20


ncbi_organism_name: Psychrobacter glacincola

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Cupriavidus sp. H18C1

ncbi_submitter: University of Bath


ncbi_organism_name: uncultured Syntrophobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Halothiobacillaceae bacterium

ncbi_submitter: University of Bergen


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Pelolinea sp.


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn University


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Clostridiales bacterium UBA1758

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_country: Chile: Yungay; Atacama Desert

ncbi_isolate: ATA bin16

ncbi_isolation_source: soil

ncbi_strain_identifiers: ATA bin16

ncbi_submitter: Monash University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of Florida


ncbi_country: Brazil: Rio de Janeiro State

ncbi_isolation_source: nodules

ncbi_organism_name: Paraburkholderia franconis

ncbi_strain_identifiers: CNPSo 3157

ncbi_submitter: Embrapa Soja


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Japan: Crane site; Tarama Hill; Okinawa Trough

ncbi_isolation_source: seawater and sediment from deep-sea hydrothermal vent field

ncbi_organism_name: Candidatus Portiera sp.

ncbi_submitter: HKUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Johnevansiales;f__Candidatus Johnevansiaceae;g__Candidatus Portiera;x__unclassified Candidatus Portiera;s__Candidatus Portiera sp.


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_country: China: Gansu

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_country: China: Yudu; Jiangxi

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium phaseoli

ncbi_submitter: Northwest A&F University


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_submitter: Centre pasteur du Cameroun


ncbi_country: Ghana: Greater Accra

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Ghana


ncbi_assembly_name: Rumen uncultured genome RUG12480

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Guangdong; Yunfu

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Nigeria

ncbi_isolation_source: leaves from fresh vegetable

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Igbinedion University Okada


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M1105

ncbi_submitter: Broad Institute


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_country: Russia: Samara

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: China: Hainan province

ncbi_isolate: MIAOwCsol

ncbi_organism_name: Wolbachia endosymbiont of Ceratosolen solmsi

ncbi_strain_identifiers: MIAOwCsol

ncbi_submitter: Nankai University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


gtdb_type_species_of_genus: t

ncbi_organism_name: Sporosarcina ureae DSM 2281

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Sporosarcina;s__Sporosarcina ureae;x__Sporosarcina ureae DSM 2281


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Institute of Biotechnology, Univerity of Helsinki


ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Queensland


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: University of Chicago


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_country: USA: Minesota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: geothermally-influenced stream

ncbi_organism_name: Fischerella thermalis WC344

ncbi_submitter: University of Montana


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: USA:New York City

ncbi_isolation_source: New York City MTA subway

ncbi_organism_name: Enterobacteriaceae bacterium UBA2706


ncbi_organism_name: Soonwooa sp.


ncbi_assembly_name: Rumen uncultured genome RUG12614

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Bangladesh: Dhaka

ncbi_submitter: Cardiff University


ncbi_country: USA: Santa Clara

ncbi_isolation_source: Human rectal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_organism_name: Streptococcus oralis


ncbi_country: Japan

ncbi_isolation_source: blood from patient with community-acquired emphysematous osteomyelitis

ncbi_submitter: Saitama medical university


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Colombia: Bogota

ncbi_submitter: Universidad El Bosque


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: USDA


ncbi_country: Switzerland

ncbi_isolation_source: nasal swab

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Bern


ncbi_country: USA:Las Vegas

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_organism_name: Clostridium sp.

ncbi_submitter: China Agricultural University


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_submitter: Institute of Marine Research


ncbi_country: Estonia: Vlijandimaa; Viiratsi

ncbi_isolation_source: manure

ncbi_organism_name: Enterococcus faecalis


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Tang lab


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: University of Alberta


ncbi_country: South Korea

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University College of medicine


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina: Famailla; Tucuman

ncbi_isolation_source: petunia roots

ncbi_organism_name: Azospirillum brasilense

ncbi_submitter: Instituto Nacional de Tecnologia Agropecuaria INTA-EEA Famailla


ncbi_submitter: Beijing macro&micro-test Bio-Tech Co.Ltd


ncbi_organism_name: Micrococcus endophyticus

ncbi_submitter: Hindu College, University of Delhi


ncbi_country: USA: Midwest

ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: University of Chicago


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Virginia

ncbi_isolation_source: Incisional infection

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Aeromonas media

ncbi_submitter: Taizhou Municipal Hospital


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Helicobacter pylori 83

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: China: Luzhou

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_isolation_source: fish

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Salmonella sp. 6412

ncbi_submitter: Zhejiang university


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Anaerotignum lactatifermentans


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: National Institute of Infectious Diseases (INEI) - ANLIS DR. CARLOS G. MALBRAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_assembly_name: freshwater MAG --- VK1_bin-0560

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: James Cook University


ncbi_country: China: Huangfengping; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: South china normal university


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: biofilm

ncbi_organism_name: Acholeplasmataceae bacterium UBA2284

ncbi_submitter: University of Queensland


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Dialister sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Fujian; Longyan

ncbi_isolation_source: mining soil

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: China: Fujian; Zijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Roskilde University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Aeromonas caviae


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: Dual-strain biofilm on Detroit 562 cells

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Emory University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Tanzania: Dar es Salaam

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bergen


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Russia: Borehole near Beyelii Yar in Tomsk

ncbi_isolation_source: groundwater filtered on 0.22 m filters

ncbi_organism_name: Ammonifex sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: Germany: Frankfurt; Zoo

ncbi_isolation_source: oral cavity

ncbi_organism_name: Weissella sp. DD23

ncbi_submitter: University of Kaiserslautern


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Agriphila inquinatella


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Serbia

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_submitter: Columbia University Medical Center


ncbi_country: Russia: Moscow

ncbi_isolation_source: synovial fluid

ncbi_organism_name: Chlamydia psittaci

ncbi_strain_identifiers: GIMC 2004:CpsAP23

ncbi_submitter: N.F.Gamaleya Research Center for Epidemiology and Microbiology


ncbi_organism_name: Desulfotomaculaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: flour/flour products

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Melrose Park; Illinois

ncbi_isolation_source: sink

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_country: Finland: Lake Avantolampi

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Polynucleobacter sp. MG-5-Ahmo-C2

ncbi_submitter: University of Innsbruck


ncbi_country: China: Hunan

ncbi_isolation_source: clinically diseased pig

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_isolation_source: Oil contaminated soil

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Ecology Institute


ncbi_strain_identifiers: CECT 7347

ncbi_submitter: BIOPOLIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum;sb__Bifidobacterium longum subsp. longum;x__Bifidobacterium longum subsp. longum CECT 7347


ncbi_organism_name: Proteiniphilum saccharofermentans


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Guangzhou

ncbi_isolation_source: semen specimen

ncbi_organism_name: Haemophilus seminalis

ncbi_strain_identifiers: SZY H1

ncbi_submitter: Tradictional Chinese medicine University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Fort Collins

ncbi_isolation_source: frozen soil

ncbi_organism_name: Paenibacillus sp. PK4536

ncbi_submitter: Colorado State University


ncbi_organism_name: Marinobacter sp. LV10MA510-1

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: BGI


ncbi_organism_name: Bacillus sp. LFS086

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. LFS086


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Prevotella corporis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4542

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Rhodoplanes serenus

ncbi_submitter: Indiana University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Viet Nam: Nha Trang Bay; South China Sea

ncbi_isolation_source: Seawater from a mussel farm located in a lagoon

ncbi_organism_name: Pseudoalteromonas sp. B530

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 8477

ncbi_submitter: University of Exeter


ncbi_country: Canada: Edmonton

ncbi_isolation_source: whole fly

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: DF

ncbi_submitter: University of Alberta


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (1uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Burkholderia sp. 1988


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 192

ncbi_submitter: Oregon State University


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Aarhus University


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Metabacillus indicus

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Yale University


ncbi_country: USA

ncbi_isolation_source: sterile tissue

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: France

ncbi_isolation_source: cheese rind

ncbi_organism_name: Pseudoalteromonas undina

ncbi_submitter: INRA


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: China: Beipiao

ncbi_isolation_source: root nodules

ncbi_organism_name: Mesorhizobium caraganae

ncbi_submitter: Universidad de Salamanca


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Yangzhou

ncbi_isolation_source: retail chicken meat

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_isolation_source: Nonfat Dry Milk

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000182


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnoanaerobaculum saburreum

ncbi_submitter: EMG


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Griffith University


ncbi_organism_name: Escherichia coli M18

ncbi_submitter: Department of Pediatrics, Washington University School of Medicine


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agriculture University


ncbi_isolation_source: soil

ncbi_organism_name: Terricaulis silvestris

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_country: Russia: Ryazan Region

ncbi_isolation_source: Ready-to-cook chicken cutlets

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Chelativorans sp. M5D2P16

ncbi_submitter: Inner Mongolia University


ncbi_country: USA: NY; New York City

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Federal State Budgetary Scientific Institution "Institute of Experimental Medicine"


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: USA: California; Eel River; South Fork Eel River; near Phillipsville

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_10_PVI_O_A

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Thomasclavelia sp.

ncbi_submitter: Biomin Research Center


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Schaedlerella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Rhodoluna sp.

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Rhodoluna;x__environmental samples;s__uncultured Rhodoluna sp.


ncbi_organism_name: Saccharothrix mutabilis subsp. capreolus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: China: Zhejiang Province; Ximen Island

ncbi_isolation_source: seawater at sediment depth

ncbi_organism_name: Pseudoalteromonas sp. T1lg23B

ncbi_submitter: Zhejiang University of Technology


ncbi_organism_name: Rhodococcus sp. NPDC060176

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NPDC060176


ncbi_isolate: SPRUCE 94

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_strain_identifiers: SPRUCE 94

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bradyrhizobium sp. STM 3557

ncbi_submitter: IRD


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_submitter: Center for Microbial Communities


ncbi_country: Germany: Cologne

ncbi_organism_name: Paenibacillus sp. Soil766

ncbi_submitter: ETH Zurich


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Day2-3_bin-355

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Bacillus sp. JRC01

ncbi_submitter: University of New Hampshire

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JRC01


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Streptomyces sp. NPDC001985

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alloprevotella tannerae


ncbi_isolation_source: freshwater

ncbi_organism_name: Calothrix sp. FACHB-156

ncbi_submitter: South China Normal University


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus Rock1-3

ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus Rock1-3


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Ethiopia: Oromia; North Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: South Korea

ncbi_isolation_source: gut

ncbi_organism_name: Parasphingorhabdus cellanae

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Salmonella enterica CVM N48687 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: USA: New York University; Manhattan; New York City; New York

ncbi_isolation_source: laboratory mutagenesis

ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: CNCTC 10;84 dCas9

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Skin

ncbi_submitter: SC


ncbi_country: China: Wenzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wenzhou Medical University


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Hydrotalea sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: ITAL


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_country: Russia: Azov Sea

ncbi_isolation_source: Azov Sea estuary water

ncbi_organism_name: Paracoccus methylarcula

ncbi_submitter: G.K.Skryabin IBPM PAS


ncbi_assembly_name: freshwater MAG --- MJ2_bin-198

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Madrid

ncbi_isolation_source: urine

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_country: Brazil

ncbi_isolation_source: hospital effluent

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UFRGS


ncbi_country: Japan: Tsukuba

ncbi_isolation_source: gut tissue

ncbi_organism_name: Bombilactobacillus mellis

ncbi_submitter: University of Lausanne


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Dallas; Texas

ncbi_submitter: The University of Texas at Dallas


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Rumen uncultured genome RUG14061

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Poland: Warsaw

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Prof. Waclaw Dabrowski Institute of Agriculture and Food Biotechnology


ncbi_isolation_source: Caecum

ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1367

ncbi_submitter: Broad Institute


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7092

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Pseudomonas sp. MEB105

ncbi_submitter: University of Chicago


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: meat bone meal

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Manhattan;x__Salmonella enterica subsp. enterica serovar Manhattan str. CFSAN001078


ncbi_organism_name: Brucella pseudogrignonensis

ncbi_submitter: NCAUR-ARS-USDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Anaerovibrio lipolyticus


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- Day6-2_bin-364

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Pectobacterium aroidearum

ncbi_strain_identifiers: YKX

ncbi_submitter: Qujing Normal University


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia: Brisbane

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Switzerland: Lullier

ncbi_isolation_source: trunk

ncbi_organism_name: Priestia megaterium

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_country: India: Vellore

ncbi_submitter: Christian Medical College


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Portugal: Faro

ncbi_isolation_source: Mango tissue

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Malaga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Zhongshania guokunii

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Leptothrix sp. (in: b-proteobacteria)

ncbi_submitter: University of Delaware

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Sphaerotilaceae;g__Leptothrix;x__unclassified Leptothrix (in: b-proteobacteria);s__Leptothrix sp. (in: b-proteobacteria)


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: CAU


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Germany

ncbi_isolation_source: stool

ncbi_submitter: Wroclaw University of Environmental and Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: pooled liver/lung homogenate from an aborted fetus

ncbi_organism_name: Waddlia chondrophila WSU 86-1044

ncbi_submitter: Moredun Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Waddliaceae;g__Waddlia;s__Waddlia chondrophila;x__Waddlia chondrophila WSU 86-1044


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: State Research Center for Applied Microbiology and Biotechnology


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Muriventricola aceti

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Pediococcus pentosaceus

ncbi_strain_identifiers: MIANGUAN

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Oceanococcus sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Hefei

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium proteolyticum

ncbi_strain_identifiers: ustc

ncbi_submitter: University of Science and Technology of China


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: South Korea: Seoul

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Asia Pacific Foundation for Infectious Diseases


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Tasman Sea

ncbi_isolation_source: Sea water

ncbi_organism_name: Synechococcus sp. MU1642

ncbi_submitter: Macquarie University


ncbi_organism_name: Sorangium sp. So ce281

ncbi_strain_identifiers: So ce281

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce281


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Youjiang Medical University for Nationalities


ncbi_organism_name: Bacillus cereus group sp. BceL006

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL006


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Pseudomonas sp. Z3-8

ncbi_submitter: KAUST


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudoalteromonas shioyasakiensis

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Candidatus Scatocola faecigallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas paraglycinae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gardnerella pickettii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Ruminococcaceae bacterium UBA2801

ncbi_submitter: University of Queensland


ncbi_isolation_source: Colon


ncbi_country: USA: Minnesota

ncbi_isolation_source: sediment

ncbi_organism_name: Herbaspirillum sp. CAH-3

ncbi_submitter: Univeristy of Minnesota


ncbi_organism_name: Clostridium sp. Hs50

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Planktophila lacus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila lacus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila lacus


ncbi_organism_name: Ignavibacteria bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Switzerland

ncbi_organism_name: Xanthomonas graminis pv. arrhenatheri

ncbi_strain_identifiers: LMG 727

ncbi_submitter: XTeam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas graminis;x__Xanthomonas graminis pv. arrhenatheri

ncbi_type_material_designation: assembly from pathotype material


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium


ncbi_country: USA: San Leandro; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Austria: Vienna

ncbi_isolation_source: feces

ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: University of Vienna


ncbi_organism_name: Pseudoalteromonas tunicata

ncbi_submitter: University of New South Wales


ncbi_country: China:Jilin; Changchun fish ponds

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: jilin university


ncbi_country: China

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: USA: MA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Shenzhen

ncbi_isolation_source: environment

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 306

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: SNUC 895

ncbi_submitter: University of Calgary


ncbi_country: Pakistan: Vehari; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. VH_24

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacterium ginsengisoli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Mahidol University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Nigeria: Igboukwu

ncbi_isolation_source: sold in market

ncbi_organism_name: Citrobacter portucalensis

ncbi_strain_identifiers: Igbk 1

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna


ncbi_country: Serbia: Futog

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Bangladesh: Sunamganj

ncbi_isolation_source: Haor wetland water

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: North South University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_assembly_name: Rumen uncultured genome RUG12570

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Hong Kong: Pokfulam

ncbi_isolation_source: indoor air

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_isolation_source: urine

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: AIMST University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Norway

ncbi_isolation_source: fish gut

ncbi_organism_name: Shewanella baltica

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of aberdeen


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: enrichment on artificial chitin hydrogel particle

ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Changsha

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Xiangya hospital, Central South University


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: SEMIA 587

ncbi_submitter: University of Regina


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: EMG


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Algeria: Baraki-Alger

ncbi_isolation_source: oil-contaminated slough

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Alberta


ncbi_submitter: Universidad del Desarrollo


ncbi_country: Thailand: Nakhon Pathom

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Medical Technology, Mahidol University


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sulfuricurvum sp. IAE1

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-1322

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; P+N+C amendment

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Montana


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Pseudarthrobacter scleromae

ncbi_submitter: Bei Hang Univercity


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Kitasatospora sp. NPDC058170

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. CQ24WZ0440SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Lacisediminihabitans sp.

ncbi_submitter: Monash University


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Ardenticatenaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Poland: Elblag

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Medicines Institute


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Philadelphia; PA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Lactococcus lactis


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Netherlands

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_country: China:Guangdong Province

ncbi_isolation_source: forest soil

ncbi_organism_name: Dyella acidiphila

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 115

ncbi_organism_name: Staphylococcus agnetis

ncbi_strain_identifiers: SNUC 725

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Puerto Rico

ncbi_isolation_source: water

ncbi_organism_name: Salinivibrio sp. PR932

ncbi_submitter: Universidad de Sevilla


ncbi_country: China: The East China Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_country: France: Vosges

ncbi_organism_name: Paraburkholderia madseniana

ncbi_submitter: University Reims Champagne Ardennes UMR FARE


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA

ncbi_isolation_source: Tank Milk

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Sao Paulo


ncbi_isolate: Fecal samples

ncbi_isolation_source: Assistance Publique - Hopitaux de Paris

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Aeromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: soil

ncbi_organism_name: Photorhabdus sp. S10-54

ncbi_submitter: University of Bern


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EBI


ncbi_organism_name: Gardnerella sp. KA00718

ncbi_submitter: Fred Hutch


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Germany

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Lebanon

ncbi_organism_name: Brucella sp. CMUL 003

ncbi_strain_identifiers: CMUL 003

ncbi_submitter: LAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;x__unclassified Brucella;s__Brucella sp. CMUL 003


ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: VA

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Avibacterium paragallinarum

ncbi_strain_identifiers: UR

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_country: China: Tianjin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Disease


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: IMG-taxon 2740891832 annotated assembly

ncbi_organism_name: Ureibacillus xyleni

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Alaska

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow joint cavity

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_country: Brazil:Santa Catarina; Florianopolis

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudescherichia sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_40_32


ncbi_organism_name: Enterococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL043PA1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_country: Philippines: South Cotabato

ncbi_isolation_source: petiole

ncbi_organism_name: Erwinia mallotivora

ncbi_submitter: Institute of Plant Breeding


ncbi_organism_name: Brevundimonas nasdae

ncbi_submitter: EMG


ncbi_country: Norway

ncbi_isolation_source: Expectorate

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: Rumen uncultured genome RUG10721

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Canada: Guelph

ncbi_isolation_source: Dry seeds

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Guelph


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bdellovibrio sp.


ncbi_organism_name: Wolbachia sp.

ncbi_submitter: Northwest A&F University


ncbi_organism_name: uncultured Desulfohalobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Vicinamibacterales bacterium


ncbi_organism_name: Methylophaga sp.

ncbi_submitter: Ocean University of China


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_submitter: The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;x__unclassified Candidatus Dormibacteria;s__Candidatus Dormibacteria bacterium


ncbi_organism_name: Streptomyces galilaeus

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_country: Italy: Ozieri

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: University of East Anglia


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf068

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Canada: Ontario

ncbi_isolation_source: Drainage basin water

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_organism_name: Rhodobacterales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola coprophilus

ncbi_submitter: EMG


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetales bacterium UBA6485

ncbi_submitter: University of Queensland


ncbi_organism_name: Catenibacterium faecis

ncbi_submitter: UIUC


ncbi_isolation_source: anal swab sample

ncbi_submitter: Center for Disease Prevention and Control of PLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Planktomarina sp.

ncbi_submitter: Monash University


ncbi_isolation_source: sea water

ncbi_organism_name: Planktotalea frisia

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: Germany: Berlin

ncbi_isolation_source: gastric corpus

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_submitter: WRAIR-Africa


ncbi_country: Canada: Alberta

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: CNPSo 17

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_country: Germany

ncbi_organism_name: Serratia fonticola

ncbi_submitter: TZW: DVGW-Technologiezentrum Wasser


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Candidatus Midichloriaceae bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;x__unclassified Candidatus Midichloriaceae;s__Candidatus Midichloriaceae bacterium


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: China

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Heilongjiang River Fishery Research Institute, Chinese Academy of Fishery Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: leg ulcer

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: Poultry meat

ncbi_organism_name: Escherichia coli B

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of the Sunshine Coast


ncbi_assembly_name: Rumen uncultured genome RUG10664

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Corynebacterium propinquum


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Limiplasma stercoravium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma stercoravium