ncbi_organism_name: Streptomyces stelliscabiei

ncbi_submitter: USDA Agricultural Research Service


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


gtdb_representative: f

ncbi_organism_name: uncultured Marinovum sp.


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Thomasclavelia sp.


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides cellulosilyticus CAG:158

ncbi_submitter: DTU


ncbi_organism_name: uncultured Lachnobacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_level: Complete Genome

ncbi_country: China: Taizhou

ncbi_isolation_source: blood

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Zhejiang Provincial Center for Disease Control and Prevention


ncbi_assembly_level: Chromosome

ncbi_country: India:New Delhi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: All India Institute of Medical Sciences


ncbi_organism_name: Escherichia coli O157:H7 str. K2622

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K2622


ncbi_country: USA: Georgia

ncbi_isolation_source: Vidalia onion field

ncbi_organism_name: Pantoea stewartii subsp. indologenes

ncbi_submitter: University of Georgia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_country: France

ncbi_isolation_source: rectal swab

ncbi_strain_identifiers: HAM

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: United Kingdom

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R969;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: [Clostridium] scindens


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Yunnan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: University of Chicago


ncbi_isolation_source: Cattle Hide

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: Canada: Lacombe

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC059272

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Parabacteroides merdae


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Proteobacteria bacterium UBA2411

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA2411


ncbi_organism_name: Enterobacter cloacae complex sp.6730552

ncbi_submitter: Tel Aviv Sourasky Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp.6730552


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: [Eubacterium] saphenum

ncbi_submitter: AAFC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_country: India: Vellore

ncbi_isolation_source: Fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_country: Japan: Motobu; Okinawa

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_name: Escherichia coli CVM N38833PS v. 1.0

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N38833PS

ncbi_submitter: FDA


ncbi_country: India: Rajsthan

ncbi_isolation_source: Rectal swab

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_country: China: Innermogolia

ncbi_isolation_source: sediments

ncbi_organism_name: Desulfamplus sp.

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: BGI-Shenzhen


ncbi_country: India: Punjab

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Guru Nanak Dev University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine sediment

ncbi_organism_name: Ruegeria atlantica

ncbi_strain_identifiers: CECT 4293

ncbi_submitter: UVEG


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_assembly_name: freshwater MAG --- E14_bin-0378

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Lubbock; TX

ncbi_isolation_source: indwelling urinary catheter

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Vagina

ncbi_organism_name: Megasphaera sp. MJR8396C

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: deep sea sediment sample 4871-20 in thermophilic enrichment culture

ncbi_organism_name: Desulfotomaculum sp.

ncbi_submitter: Marine Biological Laboratory


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: J.Craig Venter Institute


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China: Guangdong

ncbi_isolation_source: joint

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0099

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_country: Switzerland

ncbi_submitter: University of Zurich


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_country: Spain

ncbi_isolation_source: clam aquaculture

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: USA: Black Gap WMA

ncbi_organism_name: Rickettsia parkeri

ncbi_strain_identifiers: Black Gap

ncbi_submitter: Old Dominion University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Listeria swaminathanii

ncbi_submitter: University of Tennessee


ncbi_country: Brazil: Recife

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_country: Tunisia

ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium acaciae

ncbi_submitter: Ottawa Research and Development Center


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Achromobacter denitrificans

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Streptomyces sp. NPDC051001

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea: Dokdo

ncbi_isolation_source: soil

ncbi_organism_name: Metabacillus elymi

ncbi_refseq_category: reference genome

ncbi_submitter: Kyungpook National University


ncbi_country: South Korea: Jeju

ncbi_organism_name: Chengkuizengella axinellae

ncbi_submitter: Hannam University


ncbi_assembly_name: freshwater MAG --- AM4_bin-513

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Sichuan Province

ncbi_isolation_source: Large-scale pig farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan Agricultural University


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Arizona

ncbi_isolation_source: trach asp

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Pantoea sp. UBA6567

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IA

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Serratia nevei

ncbi_submitter: McMaster University


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: University of Bern


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-6040

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_country: Greece: Athens

ncbi_isolation_source: stool samples

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Lu'an People's Hospital


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_assembly_name: freshwater MAG --- E-2_bin-272

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: [Ruminococcus] torques


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fidelibacterota bacterium UBA6529

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA6529


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: >63 micron

ncbi_organism_name: Vibrio kanaloae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ghana: Accra

ncbi_isolation_source: mid-stream urine sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment


ncbi_country: USA

ncbi_organism_name: Pseudomonas sp. PDM14

ncbi_submitter: University of Chicago


ncbi_isolate: new MAG-197

ncbi_organism_name: Candidatus Accumulibacter phosphatis

ncbi_strain_identifiers: new MAG-197

ncbi_submitter: Micoorganism

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter phosphatis


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Atopobium sp. UBA4302

ncbi_submitter: University of Queensland


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Actinomadura nitritigenes

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Methylocystis sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Phascolarctobacterium faecium


gtdb_type_species_of_genus: t

ncbi_isolation_source: Freshwater; mud

ncbi_organism_name: Rhodomicrobium vannielii ATCC 17100

ncbi_submitter: Washington University in St. Louis


ncbi_country: United Kingdom: Sussex

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: Enteral feeding tube

ncbi_organism_name: Escherichia coli K1

ncbi_submitter: Nottingham Trent University, UK


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: China: Hangzhou

ncbi_isolation_source: Vaginal secretion

ncbi_organism_name: Mobiluncus curtisii

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Switzerland

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Neisseria basseii

ncbi_submitter: University of Oxford


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jeonbuk National University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: zhejiang province people's hospital


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC056462

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Geobacteraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shandong University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Psychrobacter sp. 1U1

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: uncultured Thalassospira sp.


ncbi_country: Canada: Aklavik; Northwest Territories

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: Chicken salad

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_submitter: University of Alberta


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Cameroon

ncbi_isolate: Ngousso

ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: Ngousso

ncbi_submitter: Pacific Biosciences


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: EMG


ncbi_organism_name: Xenorhabdus vietnamensis

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Prevotellamassilia timonensis


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Institute of Animal Husbandry and Veterinary, Hubei Academy of Agricultural Sciences


ncbi_organism_name: Bacillus sp. S14(2024)

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. S14(2024)


ncbi_country: Mozambique

ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Russia: Kazan

ncbi_isolation_source: aborted fetus

ncbi_organism_name: Brucella abortus 82

ncbi_submitter: "National Center for Biotechnology" RSE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Streptomyces sp. NBRC 109706

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: Oahu Island

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: OIPI

ncbi_submitter: University of California Merced

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Maribacter arcticus

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: Southern Medical University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Microbacterium aurugineum

ncbi_submitter: Fudan University


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroides stercorirosoris


ncbi_country: Canada

ncbi_isolation_source: Mussel

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Denmark: Roskilde

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Region Zealand


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Myxococcales bacterium UBA6777

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: KOlimastIR


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Escherichia sp.


ncbi_organism_name: Bacillus atrophaeus


ncbi_country: New Zealand

ncbi_isolation_source: skin lesion

ncbi_organism_name: Piscirickettsiaceae bacterium NZ-RLO2

ncbi_submitter: Ministry for Primary Industries


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: water sample

ncbi_organism_name: Pseudomonas sp. AU10

ncbi_submitter: Universidad de la Republica


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Switzerland

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Jena

ncbi_isolation_source: rectal swab neonate

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_country: Montenegro: Kotor

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha lotti

ncbi_submitter: University of California, Davis


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hopital Bicetre


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: laboratory transconjugant

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Heidelberg University Hospital


ncbi_country: USA: Monterey Canyon; California

ncbi_isolation_source: degrading whale carcass at 2891 m depth

ncbi_organism_name: Sulfurospirillum sp.

ncbi_submitter: Queen Mary University of London


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Thessaly


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Laboratorios veterinarios Lasser


ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Chlamydia psittaci

ncbi_strain_identifiers: JY;CPS-BY

ncbi_submitter: Lanzhou Veterinary Research Institute


ncbi_organism_name: Curtobacterium sp. NPDC088465

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides clarus


ncbi_organism_name: Pseudomonas kulmbachensis

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 2 / B; 5m depth; 0.2 filter

ncbi_organism_name: Chloroflexi bacterium GWB2_54_36

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium GWB2_54_36


ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Georgia

ncbi_isolation_source: Aromatherapy Bottle

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_isolation_source: oil production facility

ncbi_organism_name: Desulfomicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Pittsburgh


ncbi_country: South Africa

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 33

ncbi_submitter: SC


ncbi_country: Guinea-Bissau

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-422-N09

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Candidatus Avelusimicrobium alvi

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Aggregatibacter sp.

ncbi_submitter: EMG


ncbi_country: Canada: Liard River

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: Distal colon


ncbi_organism_name: Caldimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Dialister sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-361

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-361


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Stellenbosch University


ncbi_organism_name: uncultured Leptotrichia sp.


ncbi_country: China: Xuanwei

ncbi_isolation_source: sputum culture of lung cancer patient

ncbi_organism_name: Sphingomonas sp. LC-1

ncbi_submitter: The Third Affiliated Hospital of Kunming Medical University


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Brazil

ncbi_isolation_source: root canal

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Florida


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Chicken meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Planktophila dulcis

ncbi_submitter: University of Zurich

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis


ncbi_isolation_source: Sargasso Sea

ncbi_organism_name: Synechococcus sp. WH 8109

ncbi_submitter: Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: Alphaproteobacteria bacterium LSUCC0396

ncbi_submitter: University of Southern California


ncbi_country: Colombia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antioquia


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Southern Ocean

ncbi_organism_name: Pseudoalteromonas sp. S3178

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: University of Vienna


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWF1_34_20


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Roseivirga sp.

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; 10% subassembly


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Australia

ncbi_isolation_source: gut necropsy from a sheep with clinical Ovine Johne s disease

ncbi_submitter: The Commonwealth Scientific and Industrial Research Organisation (CSIRO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis;x__Mycobacterium avium subsp. paratuberculosis CLIJ361


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Utah


ncbi_country: Canada: Ontario

ncbi_isolation_source: waste water from culvert

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_50_16


ncbi_country: India: Rompicharla; Guntur; Andhra Pradesh

ncbi_isolation_source: root

ncbi_organism_name: Rhizobium mesosinicum

ncbi_submitter: IUNFC


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Cupriavidus necator

ncbi_submitter: Technical University of Denmark


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: Massachusetts

ncbi_organism_name: Pseudomonas sp. MWU13-2105

ncbi_submitter: Midwestern University


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: SC


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Devriesea agamarum

ncbi_submitter: Ghent University, Faculty of Veterinary Medicine


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: bacterium

ncbi_submitter: McGill University


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Enterobacter sp. 01-M-03-SI-ECC

ncbi_submitter: TRAPREA


ncbi_organism_name: Nonomuraea helvata

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudomonas mandelii


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Yoonia sp. R2-816

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital affiliated to Shanghai Jiao Tong University School of Medicine


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Actinobacteria bacterium UBA4592

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Pelagibacter sp. HIMB1509

ncbi_submitter: Hawaii Institute of Marine Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. HIMB1509


ncbi_organism_name: uncultured Oleiphilus sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterococcus lactis

ncbi_strain_identifiers: CICC 6078

ncbi_submitter: China National Research Institute of Food and Fermentation Industries


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Spain

ncbi_organism_name: Arcobacter sp. F155

ncbi_submitter: Universitat Rovira i Virgili


ncbi_organism_name: Enterococcus sp. C87

ncbi_submitter: Northwest A & F University


ncbi_country: China

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Lactobacillus acetotolerans


ncbi_organism_name: Lactobacillus intestinalis


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: J. Craig Venter Institute


ncbi_country: France: Crozon

ncbi_organism_name: Pseudomonas sp. CROZ-RG-20F-R04-15

ncbi_submitter: INRAE


ncbi_country: Antarctica: Pony Lake

ncbi_organism_name: Serratia sp. PL17

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. PL17


ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter sp. 89

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_isolation_source: Caecum

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_isolation_source: vaginal microbiome

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: India

ncbi_organism_name: Vibrio fortis

ncbi_submitter: Institute of Life Sciences


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: 20 years wild ginseng rhizosphere soil

ncbi_organism_name: Variovorax saccharolyticus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC091371

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Desulfobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Shenzhen

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: BGI


ncbi_country: USA: CO; Denver; VA Hospital

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Colorado


ncbi_country: USA: Susanville; California

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Spain: Santander

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: ITACYL


ncbi_country: China: Beijing City

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium scardovii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Sichuan; Pingwu

ncbi_organism_name: Gilliamella sp. Pas-s25

ncbi_submitter: China Agriculture University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: tannery effluent

ncbi_organism_name: Microbacterium sp. BLY

ncbi_strain_identifiers: BLY

ncbi_submitter: Babasaheb Bhimrao Ambedkar University, Lucknow


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EBI


ncbi_country: USA: Boston; MA

ncbi_isolation_source: tip

ncbi_organism_name: Staphylococcus aureus M0581

ncbi_submitter: Broad Institute


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus lugdunensis UCIM6116


ncbi_organism_name: uncultured Hyphomonas sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_assembly_name: Rumen uncultured genome RUG13015

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea

ncbi_organism_name: Staphylococcus sp. SM3655

ncbi_submitter: Korea University


ncbi_assembly_name: freshwater MAG --- Umea1_bin-0509

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Thiomicrospira sp.

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom: University of Nottingham; Sutton Bonington Dairy Centre

ncbi_isolation_source: slurry tank

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Nottingham


ncbi_country: China

ncbi_isolation_source: ICU

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: Australia: Perth

ncbi_isolation_source: Retail table eggs

ncbi_submitter: Murdoch University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_country: South Africa: Eisleben; Botlokwa; Limpopo

ncbi_isolation_source: medicinal plant

ncbi_organism_name: Peribacillus sp. AS_2

ncbi_submitter: University of Johannesburg


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_country: Finland: Olkiluoto

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_country: China:Puqian Bay

ncbi_isolation_source: Intertidal sediment samples from Puqian Bay;China

ncbi_organism_name: Streptomyces sp. HNA39

ncbi_submitter: Zhejiang Ocean University


ncbi_country: China: Shihezi;Xinjiang

ncbi_isolation_source: Cooked meat products from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: urine

ncbi_submitter: SRCAMB


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacterium sp. 14-2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. 14-2


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_assembly_name: Pseudomonas sp

ncbi_country: Chile

ncbi_isolation_source: Glacial Collins

ncbi_organism_name: Pseudomonas sp. K2I15

ncbi_submitter: University of Copenhagen


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Ureibacillus chungkukjangi

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Bacteroides sp. AM07-16

ncbi_submitter: BGI


ncbi_isolation_source: metagenome

ncbi_organism_name: Dolosigranulum pigrum

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Corynebacterium variabile


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Sweden

ncbi_organism_name: Alloscardovia omnicolens DSM 21503

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Iran: Tehran

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: University of Tehran


ncbi_country: China: Shatin

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Lewinella sp.

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2599185188 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC45

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: IMG-taxon 2602042103 annotated assembly

ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: USDA


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Bangladesh: Nandipara

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oxford University Clinical Research Unit


ncbi_country: Tanzania: picknic lake with hippos in Ngorongoro crater

ncbi_isolation_source: turbid lake in tropical area

ncbi_organism_name: Limnohabitans sp. Hippo4

ncbi_submitter: Biology Centre CAS


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Yanofskybacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;x__unclassified Candidatus Yanofskybacteria;s__Candidatus Yanofskybacteria bacterium


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA:New York City

ncbi_isolation_source: New York City MTA subway

ncbi_organism_name: Enterobacteriaceae bacterium UBA3249

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroides sp.


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Stirling


ncbi_organism_name: Enterococcus sp. DIV0198e

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: South China Agricultural University


ncbi_isolate: SPRUCE 248

ncbi_organism_name: Terriglobales bacterium

ncbi_strain_identifiers: SPRUCE 248

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Aquirhabdus sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Actinotignum sp. GS-2025e

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Yakult Central Institute


ncbi_organism_name: Streptomyces cucumeris

ncbi_submitter: BGI Research


ncbi_organism_name: Streptomyces sp. NPDC056492

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Synergistales bacterium


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.723 MAG

ncbi_isolate: bin.723 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Polaribacter sejongensis

ncbi_strain_identifiers: bin.723 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_organism_name: Frigidibacter mobilis

ncbi_submitter: Peking University


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia albertii

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: PEI

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: EMG


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Ohio

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Collinsella bouchesdurhonensis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Candidatus Sulfopaludibacter sp. SbA3

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Sulfopaludibacter;x__unclassified Candidatus Sulfopaludibacter;s__Candidatus Sulfopaludibacter sp. SbA3


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: potato tuber

ncbi_organism_name: Streptomyces solaniscabiei

ncbi_submitter: Agricultural Reasearch Council


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: Sudan

ncbi_isolation_source: Sepsis

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: King Abdulaziz University


ncbi_country: China: Hainan Province

ncbi_isolation_source: spleen of pantropical spotted dolphin

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Rippkaea orientalis PCC 8801

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Spain: Maria de la Salut; Majorca Island

ncbi_isolation_source: agricultural soil [ENVO:00002259]

ncbi_organism_name: Pseudomonas sp. PGPR81

ncbi_submitter: Universitat de les Illes Balears (UIB)


ncbi_isolation_source: miscellaneous body fluid

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 25681_5

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Asaia bogorensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: South Korea: Seoul

ncbi_organism_name: Acetobacter pomorum

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Nocardia brasiliensis

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: China: Jiangsu

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: MI

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Liaoning

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_country: Philippines

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: France: Besancon

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 34

ncbi_submitter: Ghent University


ncbi_country: Cambodia:Phnom Penh

ncbi_isolation_source: pus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NWAFU


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Ligilactobacillus animalis

ncbi_submitter: INRA Jouy-en-Josas


ncbi_organism_name: Streptococcus suis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Chamaesiphon sp. OTE_75_metabat_567


ncbi_country: Cameroon

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_strain_identifiers: IPCG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada

ncbi_isolation_source: colon tissue of a pig with mucohaemorrhagic diarrhea

ncbi_organism_name: Brachyspira hampsonii 30599

ncbi_submitter: University of Saskatchewan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira;s__Brachyspira hampsonii;x__Brachyspira hampsonii bv. I;x__Brachyspira hampsonii 30599


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Mesorhizobium ciceri

ncbi_submitter: Murdoch University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: 2403PM;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_country: USA: West Wareham; Massachusetts

ncbi_isolation_source: roots

ncbi_organism_name: Pseudomonas sp. MWU12-3103b

ncbi_submitter: Midwestern University


ncbi_country: India: Mumbai

ncbi_isolation_source: diseased Culex fatigans larve

ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingorhabdus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0247

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Brazil

ncbi_isolation_source: Petroleum production water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Vienna


ncbi_country: China

ncbi_isolation_source: lettuce

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The National University of Malaysia (UKM)


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caecimuris


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_submitter: Instituto Nacional de Rehabilitacion Luis Guillermo Ibarra Ibarra


ncbi_organism_name: Bradyrhizobium sp. STM 3561

ncbi_submitter: IRD


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bacillus siamensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus siamensis


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces althioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Brevundimonas aurantiaca

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_assembly_name: freshwater MAG --- Umea2_bin-3220

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_organism_name: Salmonella sp. NW441

ncbi_submitter: Sichuan University


ncbi_organism_name: Fluviibacter sp.

ncbi_submitter: UNIVERSITY OF NORTH BENGAL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: tracheal suction

ncbi_organism_name: Burkholderia pseudomallei HBPUB10303a

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Washington

ncbi_isolation_source: humeral explant from a patient with failed shoulder athroplasty

ncbi_organism_name: Cutibacterium acnes 18B

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE84

ncbi_submitter: Broad Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Segatella copri

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC002131


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Aklavik; Northwest Territories

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Ulvibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: China: Sichuan; Yibin

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: sea water

ncbi_organism_name: Sphingorhabdus lutea

ncbi_submitter: Korea University


ncbi_assembly_name: reference map

ncbi_organism_name: Mycobacterium tuberculosis INS_SEN

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_submitter: Kansas State University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom

ncbi_isolation_source: not available: not collected

ncbi_organism_name: Streptococcus pseudoporcinus

ncbi_submitter: SC


ncbi_country: Canada: Quebec

ncbi_isolation_source: swab

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Government of Canada


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Humaya River; Agua Caliente

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Luminiphilus sp.


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: human stool

ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Spain

ncbi_isolation_source: rhizomes

ncbi_organism_name: Pseudomonas fitomaticsae

ncbi_submitter: Center for Research in Agricultural Genomics (CRAG)


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: Homo Sapiens

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Nottingham


ncbi_country: Australia: Westmead; Sydney

ncbi_submitter: University of Sydney


ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 60:r:e,n,x,z15


ncbi_organism_name: Sulfurisoma sediminicola

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Tenacibaculum sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Malaysia

ncbi_isolation_source: water

ncbi_organism_name: Leptospira selangorensis

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_country: Thailand

ncbi_isolation_source: other

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: HANYANG UNIVERSITY


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_country: Algeria: Gara Djebilet Mine

ncbi_isolation_source: crushed rocks in Gara Djebilet Iron Mine

ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Clostridium sp. HGF2

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Prevotella pectinovora


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Perm region

ncbi_isolation_source: oil-polluted soil

ncbi_organism_name: Rhodococcus rhodochrous

ncbi_strain_identifiers: IEGM 757

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Sinus

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Utah


ncbi_country: USA:New York; Morrisania

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Curtobacterium sp. PhB42

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: water

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_country: Netherlands

ncbi_isolation_source: Dairy starter

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Radboudumc


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: China: Sichuang

ncbi_isolation_source: aquarium water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Burkholderia pseudomallei


ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: beef

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Photobacterium frigidiphilum

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Center for Genome Regulation (CRG)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Rariglobus sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella sp. R45

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Streptomyces paradoxus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paenirhodobacter enshiensis

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Hominilimicola sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Massachusetts

ncbi_organism_name: Neptunomonas sp. CHC150

ncbi_submitter: MIT


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Octapeptin C4

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Queensland


ncbi_isolation_source: unknown

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sobrinus

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: United Kingdom: England

ncbi_isolation_source: Laboratory

ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Germany

ncbi_isolation_source: environmental

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: freshwater lake Microcystis colony

ncbi_organism_name: Burkholderia sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Ghana

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: LABEO


ncbi_country: China: Jiangsu

ncbi_isolation_source: stool

ncbi_submitter: Yangzhou University


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV157

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: metagenome

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_submitter: Makerere University


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium CG_4_8_14_3_um_filter_42_11


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Phormidesmis sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- VK3_bin-0704

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan: Karachi

ncbi_isolation_source: pleural fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Karachi


ncbi_country: Chile: Region de Aysen

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_submitter: Mahidol University


ncbi_assembly_name: IMG-taxon 2599185224 annotated assembly

ncbi_organism_name: Natronincola peptidivorans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: India

ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: AKAD

ncbi_submitter: Dr. Harisingh Gour University (A Central University), Sagar, (M.P.), India


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Georgia Institute of Technology


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: annelid root tissue scrapped from turkey femur surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Emcibacteraceae bacterium

ncbi_submitter: ProBone


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Bacteroidetes bacterium MED-G17

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium MED-G17


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_country: Japan

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_country: India: Iewduh; Shillong

ncbi_isolation_source: Poultry feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: New Caledonia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira wolffii

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_assembly_name: freshwater MAG --- AM-2014-D6_bin-147

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium