ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_submitter: ICAR Research Complex for NEH Region


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


gtdb_representative: t

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Iran: Kermanshah

ncbi_isolation_source: Wheat rhizosphere

ncbi_organism_name: Pseudomonas sp. SWRI99

ncbi_submitter: KU Leuven


ncbi_assembly_level: Scaffold

ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. avium;x__Mycobacterium avium subsp. avium ATCC 25291

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: South Korea:Jinju

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: IMG-taxon 2690315617 annotated assembly

ncbi_organism_name: Variovorax sp. YR634

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonas circumdentaria

ncbi_submitter: Center for Bioinformatics


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jeonbuk National University


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Hubei

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S088_02709

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Tannerella sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_country: Ecuador

ncbi_isolation_source: land iguanas

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Poland

ncbi_isolation_source: soil

ncbi_organism_name: Catenulispora pinisilvae

ncbi_submitter: Nicolaus Copernicus University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: The East China Sea

ncbi_isolation_source: Near bottom seawater

ncbi_organism_name: bacterium

ncbi_submitter: Ocean University of China


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: University of Florida


ncbi_organism_name: Streptomyces bluensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salinarimonas sp. NSM

ncbi_strain_identifiers: NSM

ncbi_submitter: Bellevue University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Serratia sp. BNK-31-a

ncbi_submitter: National Institute of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. BNK-31-a


ncbi_organism_name: uncultured Chthoniobacter sp.


ncbi_organism_name: Zhengella sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: EMG


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;x__unclassified Candidatus Marinacidobacterales;s__Candidatus Marinacidobacterales bacterium


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_submitter: Hazara University


ncbi_assembly_name: Rumen uncultured genome RUG026

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. K5453

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K5453


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


gtdb_type_species_of_genus: t

ncbi_isolation_source: Environmental; Sorghum bicolor

ncbi_organism_name: Robbsia andropogonis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Klebsiella sp. 96938

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_assembly_name: freshwater MAG --- Loc090721-7m_bin-539

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_country: China: Tibetans

ncbi_isolation_source: feces from diarrhoeal outpatients

ncbi_organism_name: Escherichia coli

ncbi_submitter: beijing


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Denmark

ncbi_isolation_source: Denmark

ncbi_organism_name: Spirabiliibacterium pneumoniae

ncbi_refseq_category: reference genome

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Cote d Ivoire: Cote d Ivoire;Africa; Ebrie Laguna

ncbi_organism_name: Hathewaya limosa

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: sediment

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Staphylococcus sp. 50Mo3-2

ncbi_submitter: Chung-Ang university


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas intestinigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas intestinigallinarum


ncbi_organism_name: Rhodococcus daqingensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Rhabdochlamydiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium RIFCSPLOWO2_01_FULL_39_12


ncbi_assembly_level: Chromosome

ncbi_organism_name: Enterobacter sp. BIDMC100

ncbi_submitter: Ministry of Public Health-Thailand

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. BIDMC100


ncbi_organism_name: uncultured Psychromonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Morocco: Maamora Forest

ncbi_organism_name: Sinorhizobium meliloti

ncbi_strain_identifiers: CCMM B554 (FSM-MA)

ncbi_submitter: BRC


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: United Kingdom: London

ncbi_isolation_source: Cough Swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: China: Henan

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium GW2011_GWA2_41_24


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Austria

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Iowa State University


ncbi_country: Netherlands

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: collective feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: China

ncbi_organism_name: Citrobacter youngae

ncbi_submitter: The First Affiliated Hospital of Chongqing Medical University


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia sp. AU12872

ncbi_submitter: JCVI


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Caedimonas sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Microgenomates bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Candidatus Microgenomates;s__Candidatus Microgenomates bacterium


ncbi_assembly_name: freshwater MAG --- MJ130729A_bin-102

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Sudan: Khartoum

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National University Research Institute


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GFQ9D203P-1

ncbi_submitter: South China Agricultural University


ncbi_country: Denmark: Tjele

ncbi_isolation_source: hind-gut

ncbi_organism_name: Megasphaera sp. DJF_B143

ncbi_submitter: Aarhus University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Lund University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: Mediterranean Sea

ncbi_organism_name: Alteromonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Acidithiobacillus sp. BN09-2

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Anaerostipes avistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Candidatus Saccharimonas aalborgensis

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__Candidatus Saccharimonas aalborgensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__Candidatus Saccharimonas aalborgensis


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Oman

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Sultan Qaboos University


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Laboratory of Applied Microbiology, Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture


ncbi_isolation_source: Urinary tract infection

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Mycobacterium sp.


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Thammasat University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Brevibacillus sp. FIR094

ncbi_submitter: Centro Nacional de Pesquisa em Energia e Materiais (CNPEM)


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: bacterium ADurb.Bin270

ncbi_submitter: University of Illinois


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Kocuria rhizosphaericola

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn university


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-1414

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: EPFL


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_country: Germany

ncbi_isolation_source: Bronchial secretions/BAL

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SurvCARE


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Loyola University Chicago


ncbi_assembly_name: HelPylUM018 1.0

ncbi_country: Malaysia

ncbi_organism_name: Helicobacter pylori UM018

ncbi_submitter: University of Hyderabad


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: Ontario County; NY

ncbi_isolation_source: plant

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: bacterium

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium D16-36

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangsu

ncbi_isolation_source: seawater from white shrimp (Litopenaeus vannamei) tank

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Japan

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Yakult Central Institute


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfotomaculaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: Colon


ncbi_country: China: Fangchenggang City; Guangxi Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Sphaerotilaceae;g__Rubrivivax;s__Rubrivivax benzoatilyticus;x__Rubrivivax benzoatilyticus JA2 = ATCC BAA-35


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0596

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: SCOPE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: Canada: Liard River

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: South Korea:Gyeongsangbukdo

ncbi_isolation_source: pig

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Maine

ncbi_isolation_source: foregut

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Elanco Animal Health


ncbi_organism_name: Defluviitoga tunisiensis

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Sutterella seckii

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: University of Malaya


ncbi_organism_name: Xylanimonas ulmi


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Iran: East Azerbaijan

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas khavaziana

ncbi_submitter: KU Leuven


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Bronchial washing (contralateral lung; no tumour)

ncbi_organism_name: Segatella salivae

ncbi_submitter: University of the Sunshine Coast


ncbi_organism_name: Microbacterium sp. LjRoot45

ncbi_submitter: Aarhus University


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL007PA1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 117

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China

ncbi_organism_name: Salinarimonas rosea DSM 21201

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter sp. KAM394

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 227

ncbi_organism_name: Staphylococcus agnetis

ncbi_strain_identifiers: SNUC 4805

ncbi_submitter: University of Calgary


ncbi_isolate: Patient #46

ncbi_isolation_source: Skin

ncbi_organism_name: Cutibacterium acnes

ncbi_strain_identifiers: Patient #46

ncbi_submitter: sapienza university


ncbi_country: USA: New Hampshire; Mont Vernon

ncbi_isolation_source: freshwater stream

ncbi_organism_name: Bacillus thuringiensis

ncbi_strain_identifiers: MW


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SC


ncbi_isolation_source: soil

ncbi_organism_name: Sphingobium sp. CFD-2

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Flagellimonas algarum

ncbi_submitter: Keimyung University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Dalian Medical University


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: The Lu'an People's Hospital


ncbi_submitter: Malawi Liverpool Wellcome Programme

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_country: Japan

ncbi_organism_name: Sharpea azabuensis DSM 18934


ncbi_country: Spain: Seville

ncbi_isolation_source: drinking water distribution system

ncbi_organism_name: Massilia aurea

ncbi_submitter: University Of Tasmania, Tasmania Inst Agriculture


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Bifidobacteriaceae bacterium MCC02031

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: control oxisol soil plot 2

ncbi_organism_name: Hamadaea sp.

ncbi_submitter: Arizona State University


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Hiroshima University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Colombia: Bucaramanga

ncbi_submitter: Universidad El Bosque


ncbi_country: Taiwan

ncbi_isolation_source: Taiwan

ncbi_strain_identifiers: Wartortle

ncbi_submitter: National Chung Cheng University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Sphingomonas aerolata

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_assembly_name: Peptoclostridium difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Russia: Kazan

ncbi_isolation_source: an anaerobic reactor

ncbi_organism_name: Staphylococcus sp. EZ-P03

ncbi_submitter: Kazan (Volga Region) Federal University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Sathyabama Institute of Science and Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thalassolituus sp. LLYu03

ncbi_submitter: ShanghaiOceanUniversity


ncbi_organism_name: Shewanella marisflavi

ncbi_submitter: Yangzhou University


ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Methylibium sp. Pch-M

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Salmonella sp. SKLX078111

ncbi_submitter: Zhejiang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_organism_name: Alistipes sp.


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Marinospirillum alkalitolerans

ncbi_submitter: National Centre For Cell Science (NCCS)


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: South Korea: Seongnam

ncbi_isolation_source: green onion

ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: Gachon University


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Black Sea sulfidic water cellulose enrichment

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_country: Argentina

ncbi_isolation_source: outbreak

ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: BrGarc

ncbi_submitter: Northern Arizona University


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Arizona

ncbi_isolation_source: Sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_02_FULL_46_12


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Normandie Univ


ncbi_country: China: Shanghai

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_organism_name: Bradyrhizobium yuanmingense

ncbi_strain_identifiers: USDA 230

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Caldisericum exile

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: liver

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Rumen uncultured genome RUG12130

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succiniclasticum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Acinetobacter baumannii 24845_10

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Russia: Republic of Altai; Kosh-Agach District; Tashanta Village

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute 'Microbe'


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Poland

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_isolation_source: small intestine

ncbi_organism_name: Limosilactobacillus mucosae DSM 13345

ncbi_submitter: Shanghai Majorbio


ncbi_country: Italy

ncbi_organism_name: Bacillus sp. AG1163

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AG1163


ncbi_organism_name: Brevibacillus porteri

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Hungary

ncbi_isolation_source: BAL

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Public Health and Pharmacy Center


ncbi_country: Japan

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_submitter: University of Texas at Dallas


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: China: Hainan

ncbi_isolation_source: coconut palm rhizosphere soil

ncbi_organism_name: Actinoplanes flavus

ncbi_submitter: School of life science


ncbi_assembly_name: Rumen uncultured genome RUG077

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany

ncbi_isolation_source: Kiel Fjord

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Loch Norse

ncbi_isolation_source: surface water collection during the winter

ncbi_organism_name: Shewanella sp. NKUCC06_TVS

ncbi_submitter: Northern Kentucky University


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Eubacteriales Family XIII. Incertae Sedis bacterium


ncbi_country: Ireland

ncbi_isolation_source: Broiler; caecal contents

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Cork Institute of Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: biopsy

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Aliterella sp. RAGGC_92

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Pseudolysinimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Clostridium] innocuum


ncbi_country: Malaysia

ncbi_isolation_source: Endotracheal tube swab

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. HYC2

ncbi_submitter: New Drug Research & Development Company of NCPC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Streptomyces racemochromogenes

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Estonia

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Honghe

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Snodgrassella sp. B3800


ncbi_country: Hong Kong: Chek Chau

ncbi_organism_name: Roseobacter sp. HKCCD7389

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Thermoanaerobacter kivui

ncbi_submitter: Graz University of Technology


ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Staphylococcus aureus DAR5845

ncbi_submitter: Broad Institute


ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Vibrio sp. 2026

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Thalassospira sp. CH_XMU1448-2

ncbi_submitter: Third Institute of Oceanography


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium D16-29

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: uncultured Pedosphaera sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: University hospital Hamburg-Eppendorf


ncbi_isolate: AOP18_B2_surf _bin _1

ncbi_organism_name: Paucilactobacillus nenjiangensis

ncbi_strain_identifiers: AOP18_B2_surf _bin _1

ncbi_submitter: Genoscope


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;x__unclassified Candidatus Krumholzibacteriota;s__Candidatus Krumholzibacteriota bacterium


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: CAU


ncbi_organism_name: uncultured Pirellulaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Laboratory of Bioinformatics, Biomathematics and Biostatistics; Institut Pasteur de Tunis


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas sp. F1002

ncbi_submitter: Wageningen University & Research


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: South Korea: Goseong

ncbi_isolation_source: Marine algae

ncbi_organism_name: Phaeobacter sp. J2-8

ncbi_submitter: Chung-Ang university


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_assembly_name: Rumen uncultured genome RUG13415

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Butyricicoccus sp. AM05-1

ncbi_submitter: BGI


ncbi_country: Hungary

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobacterium pedocola

ncbi_submitter: Seqomics Ltd.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: Kenya: Kakamega

ncbi_isolation_source: P5 gut compartment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Istituto di Scienze Biomediche della Difesa


ncbi_organism_name: Prevotella jejuni


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Washington


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Plant Pathology Faculty of Agriculture, Kyushu University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Cantharis nigra


ncbi_organism_name: Massilia sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Trichodesmium colonies collected on the surface of the Caribbean Sea

ncbi_organism_name: Ruegeria sp. TrichCH4B

ncbi_submitter: Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: Harvard University


ncbi_country: Australia: Brisbane

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: The University of Queensland


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Chloroherpetonaceae bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_organism_name: Eggerthella hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China

ncbi_isolation_source: pickle

ncbi_organism_name: Lacticaseibacillus mingshuiensis

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Staphylococcus aureus F48420

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudonocardia autotrophica

ncbi_submitter: Fraunhofer Institute for Interfacial Engineering and Biotechnolgy IGB


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Melbourne


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: uncultured Eggerthella sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas at San Antonio


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled cattle faecal samples collected from floor of farm

ncbi_submitter: The REHAB Consortium


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Emcibacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Russia: Moscow

ncbi_isolation_source: liquor

ncbi_submitter: SRCAMB


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Betaproteobacteria bacterium


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Smithella sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 129

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pakistan

ncbi_submitter: Cardiff University


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Bradford; NH

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Hubbard Center for Genome Studies


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_organism_name: Corallococcus caeni

ncbi_submitter: Microbial Ecology and Technology Research Group Bioproduction Research Institute, National Institute of Adovanced Industrial Science and Technology (AIST)


ncbi_country: India: Madhya Pradesh; Sehore

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: thermophilic anaerobic digestion

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Streptomyces sp. NBC_01725

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_country: USA

ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: University of California, Davis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Chongqing

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Southwest University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M064S2

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: uncultured Eggerthella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Prevotellaceae bacterium


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Mauritius


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Montana State University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: terrestrial

ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: University of Queensland


ncbi_country: Ecuador: Quito

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad San Francisco de Quito


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD14437

ncbi_submitter: Broad Institute


ncbi_country: Trinidad and Tobago: Trinidad

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas melonis

ncbi_submitter: The University of The West Indies, St. Augustine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: KAUST


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_submitter: Khyber Medical University, peshawar, KPK, Pakistan


ncbi_organism_name: Lelliottia nimipressuralis

ncbi_submitter: The Institute of Chemical Biology and Fundamental Medicine SB RAS


ncbi_organism_name: Bacillus sp. Ba 3

ncbi_strain_identifiers: Ba 3

ncbi_submitter: CAS Center for Excellence in Molecular Plant Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Ba 3


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: EMG


ncbi_organism_name: Rhizobium wenxiniae

ncbi_submitter: University of Washington


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Dourados

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Italy: Marche; Ancona; Filottrano

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZSAM


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Streptococcus agalactiae CCUG 37737

ncbi_submitter: The J. Craig Venter Institute


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Kordiimonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Shandong

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: North Dakota

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: freshwater lake; 40-80 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Germany: Sylt

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: amniotic fluid

ncbi_organism_name: Prevotella amnii CRIS 21A-A

ncbi_strain_identifiers: CRIS 21A-A

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella amnii;x__Prevotella amnii CRIS 21A-A


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_organism_name: Aeromonas aquatica

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: USA: Seattle

ncbi_isolation_source: vagina

ncbi_organism_name: Megasphaera hutchinsoni

ncbi_submitter: University of Washington


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolate: metabat2_pooled_metaflye.372 MAG

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_strain_identifiers: metabat2_pooled_metaflye.372 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: Lysogeny broth

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Candidatus Segatella caccae


ncbi_country: Canada: Manitoba

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Japan:Okayama; tsuyama

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Bacteriology, Hiroshima University Graduate School of Biomedical & Health Sciences


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: Cambridge; Massachusetts

ncbi_isolation_source: stool

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: UCSF


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacteriaceae bacterium


ncbi_country: Colombia

ncbi_isolation_source: Surgical wound

ncbi_organism_name: Staphylococcus aureus DAR5805

ncbi_submitter: Broad Institute


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Proteiniclasticum ruminis


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Lithuania

ncbi_isolation_source: raw cow milk

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_organism_name: Leptospira interrogans serovar Bataviae

ncbi_strain_identifiers: USDA BTL-020

ncbi_submitter: USDA


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Romboutsia ilealis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Empedobacter sp.


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany

ncbi_isolation_source: feed

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: PAGS


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Washington University School of Medicine


ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Cycloclasticus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Viet Nam

ncbi_isolation_source: laboratory selection

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium thermophilum

ncbi_submitter: EMG


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium mongoliense

ncbi_submitter: University of Parma


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pelagibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Schleiferilactobacillus harbinensis

ncbi_submitter: Teagasc


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Neobacillus thermocopriae

ncbi_submitter: Tecnologico Nacional de Mexico/Instituto Tecnologico de Veracruz


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Aquirufa ecclesiirivi

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Bryobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northwestern University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Mogibacterium diversum

ncbi_submitter: EMG


ncbi_country: USA:New York City

ncbi_isolation_source: New York City MTA subway

ncbi_organism_name: Enterobacteriaceae bacterium UBA3242

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Chongqing University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Spain: Madrid

ncbi_isolation_source: stomach

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Chromobacterium phragmitis

ncbi_submitter: Universidade Estadual de Londrina - UEL


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F76996

ncbi_submitter: Broad Institute


ncbi_country: Thailand


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Mesotoga sp.

ncbi_submitter: University of Waterloo


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: meat

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Brucellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Gemmobacter sp.

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_country: China

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: Georgia

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces caniferus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Slovakia

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: JLU


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-332

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bacteroidia bacterium

ncbi_strain_identifiers: new MAG-332

ncbi_submitter: Micoorganism

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: South Africa

ncbi_organism_name: Kaistella sp. SH19-2b

ncbi_submitter: University of the Western Cape

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;x__Chryseobacterium group;g__Kaistella;x__unclassified Kaistella;s__Kaistella sp. SH19-2b


ncbi_country: Sri Lanka: Colombo

ncbi_isolation_source: Raw chicken meat

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Agona

ncbi_submitter: Nanyang Technological University


ncbi_country: Hong Kong

ncbi_isolation_source: wound tissue

ncbi_organism_name: Superficieibacter sp. HKU1

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EMBL-EBI


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Tongue

ncbi_organism_name: Fusobacterium pseudoperiodonticum

ncbi_strain_identifiers: KCOM 2653

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_organism_name: Pseudomonas amygdali pv. dendropanacis

ncbi_strain_identifiers: CFBP 3226

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. dendropanacis


ncbi_country: Belgium

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: nasopharynx


ncbi_country: Argentina

ncbi_isolation_source: fermented wheat flour

ncbi_organism_name: Pediococcus argentinicus

ncbi_submitter: Shanghai Majorbio


ncbi_country: Australia: Brisbane

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: China Agricultural University


ncbi_country: Portugal

ncbi_isolation_source: epiphytic infection of leaf

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Instituto Pedro Nunes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: Russia: Moscow

ncbi_isolation_source: blood

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: South Korea: Jinju

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: USA: CA

ncbi_isolation_source: frozen vegetable

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Pseudomonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_organism_name: Candidatus Dorea intestinavium

ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pseudacidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium UBA5749


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_isolation_source: human skin

ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_submitter: Centre for Molecular and Biomolecular Informatics (Radboudumc Nijmegen)


ncbi_country: Switzerland: Bern

ncbi_submitter: University of Applied Sciences of Western Switzerland hepia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: China: the Yellow Sea

ncbi_organism_name: Parasedimentitalea huanghaiensis

ncbi_submitter: Jining Medical University


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Candidatus Borkfalkia faecigallinarum


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of East Anglia


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-0431

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: South Africa: King Dinuzulu Hospital

ncbi_isolation_source: sputum

ncbi_submitter: Broad Institute


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: South Korea: andong

ncbi_organism_name: Paenibacillus andongensis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Myxococcota bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Teagasc


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_submitter: University of Alberta


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_assembly_name: Rumen uncultured genome RUG12433

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_submitter: Tsinghua University


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: Faeces


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_4 depth 0-3 cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Guatemala: San Vicente Pacaya

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus siamensis

ncbi_submitter: Instituto de Investigaciones Agropecuarias

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus siamensis


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: South Korea

ncbi_isolation_source: sea water

ncbi_organism_name: Malaciobacter marinus

ncbi_strain_identifiers: CECT 7727

ncbi_submitter: Universitat Rovira i Virgili


ncbi_country: Canada: Toronto

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: Germany

ncbi_isolation_source: human stomach

ncbi_organism_name: Helicobacter pylori HP87hu

ncbi_submitter: MHH


ncbi_country: USA: NC

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: Maq reference guided assembly

ncbi_country: USA

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis;x__Mycobacterium avium subsp. hominissuis 3388


ncbi_assembly_name: IMG-taxon 2675903144 annotated assembly

ncbi_organism_name: Nitrosospira briensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Draconibacterium aestuarii

ncbi_submitter: Zhejiang University


ncbi_country: Antarctica: Lake Vostok

ncbi_isolation_source: Lake Vostok accretion ice

ncbi_organism_name: Methylobacterium sp. V23

ncbi_submitter: Fundacion Instituto Leloir, IIBBA-CONICET


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Japan:Ishikawa; Kanazawa city

ncbi_isolation_source: human urine

ncbi_organism_name: Proteus vulgaris

ncbi_submitter: Department of Clinical Laboratory, Kanazawa Medical University Hospital


ncbi_country: Kenya

ncbi_organism_name: Prevotellaceae bacterium UBA6848

ncbi_submitter: University of Queensland


ncbi_country: Canada: Manitoba

ncbi_isolation_source: Soy bean root

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: University of Manitoba


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Paracoccaceae bacterium


ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13322

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_assembly_name: IMG-taxon 2639762581 annotated assembly

ncbi_organism_name: Stenotrophomonas indicatrix


ncbi_country: France

ncbi_isolation_source: PACA; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_country: Ireland: Dublin

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Maynooth University


ncbi_country: Japan:Akita; Nikaho

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Institute os Infectious Diseases


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: UANTW


ncbi_organism_name: Carboxydocellales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Qinghai

ncbi_isolation_source: Saline water

ncbi_organism_name: Pseudidiomarina planktonica

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_country: Switzerland: Bern

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Applied Sciences of Western Switzerland hepia


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Dialister sp.


ncbi_country: USA: NY

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UMCG Groningen


ncbi_organism_name: Selenomonas sputigena


ncbi_country: Russia: Novgorod Region

ncbi_isolation_source: meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Catellatospora aurea

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Cyanobacteriota bacterium PSP.bin.10

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteriota bacterium PSP.bin.10


ncbi_country: Malaysia

ncbi_isolation_source: soil

ncbi_organism_name: Pandoraea pnomenusa

ncbi_submitter: University of Malaya


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Candidatus Enterosoma sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Enterosoma;x__unclassified Candidatus Enterosoma;s__Candidatus Enterosoma sp.


ncbi_country: Trinidad and Tobago

ncbi_isolation_source: urine

ncbi_submitter: University of the West Indies


ncbi_country: Italy

ncbi_isolation_source: cervical lymph node of a girl

ncbi_organism_name: Mycobacterium florentinum

ncbi_submitter: Uppsala University


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: clinical material

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universitaetsklinikum Freiburg