ncbi_country: USA: NARMS

ncbi_isolation_source: chicken carcass rinsate

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: USDA-ARS-USNPRC-RRC


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: unknown

ncbi_organism_name: Clostridioides difficile


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_organism_name: Flavobacteriales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium


ncbi_organism_name: Microcoleus sp. B4-C5

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_assembly_level: Complete Genome

ncbi_organism_name: uncultured Vibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Fusobacterium sp.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Russia: Samara

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sediment sample collected from floor of cattle farm

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: The REHAB Consortium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Sphingobacterium yanglingense

ncbi_submitter: Max Planck Institute for Biology


ncbi_submitter: Instituto Nacional de Salud Publica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Greece: Western Macedonia

ncbi_isolation_source: artisanal Greek Kefalograviera cheese

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef sponge

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: James Cook University


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Bangladesh

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: NSU Genome Research Institute (NGRI), North South University


ncbi_country: Spain

ncbi_isolation_source: sea water

ncbi_organism_name: Yersinia frederiksenii


ncbi_country: USA: Wisconsin

ncbi_organism_name: Streptomyces sp. b84

ncbi_submitter: Cornell University


ncbi_country: Romania: Bucharest

ncbi_isolation_source: clinical

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_assembly_level: Chromosome

ncbi_country: Canada: British Columbia

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20121812


ncbi_strain_identifiers: XZ-A

ncbi_submitter: Chengdu University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: United Kingdom: London

ncbi_isolation_source: Rectum

ncbi_submitter: Nottingham Trent University


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Persephonella sp.

ncbi_submitter: Portland State University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridium baratii

ncbi_submitter: University of California, Berkeley


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus cecorum;x__Enterococcus cecorum DSM 20682 = ATCC 43198

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: MidWest; broiler breeder farm 13

ncbi_isolation_source: Environmental bootie

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Salmonella sp. NW357

ncbi_submitter: Sichuan University


ncbi_country: Germany

ncbi_isolation_source: water

ncbi_organism_name: Serratia fonticola

ncbi_submitter: TZW: DVGW-Technologiezentrum Wasser


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Pelagimonas sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: waste water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre pasteur du Cameroun


ncbi_assembly_name: freshwater MAG --- I2_bin-059

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Kuwait

ncbi_isolation_source: Tracheal Secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kuwait University


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Brevibacillus sp.


ncbi_country: Malaysia: Selangor

ncbi_isolation_source: kidney

ncbi_organism_name: Leptospira weilii

ncbi_submitter: UPM


ncbi_organism_name: Pseudomonas qingdaonensis


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Public Health Clinical Center


ncbi_assembly_name: Rumen uncultured genome RUG11798

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Odoribacter faecigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptococcus sp. SC1

ncbi_submitter: University Hospital Dresden


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Butyricimonas muris

ncbi_submitter: Institute of Process Engineering, Chinese Academy of Sciences


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- MJ_bin-1555

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Kenya Medical Research Institute


ncbi_isolate: metabat2_coassembly_bwa.334 MAG

ncbi_strain_identifiers: metabat2_coassembly_bwa.334 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Ethiopia: Tigray; West Tigray

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Colorado


ncbi_organism_name: Rhizobium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Herpetosiphonales bacterium

ncbi_submitter: Stockholm University


ncbi_country: China: Hunan

ncbi_organism_name: Paenibacillus sinensis

ncbi_refseq_category: reference genome

ncbi_submitter: China agricultural university


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: USA: Tennessee

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_country: China: Shaoguan; Guangdong

ncbi_isolation_source: plant tissue

ncbi_organism_name: Dickeya fangzhongdai

ncbi_submitter: South China Agricultural University


ncbi_country: Sri Lanka: Peradeniya; Central Province

ncbi_organism_name: Rhizobium sp. CB3090

ncbi_submitter: Murdoch University


ncbi_organism_name: Streptomyces xinghaiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea: Gyeonggido; Giheung

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_strain_identifiers: IRT

ncbi_submitter: Institute for Basic Science (IBS) and Pohang University of Science and Technology (POSTECH)


ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_organism_name: Borreliella bavariensis

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_country: Spain: Barcelona

ncbi_isolation_source: rectal smear

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Hospital Universitari Vall d'Hebron


ncbi_country: Czech Republic: Pardubice region

ncbi_isolation_source: genital tract swabs

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: State Veterinary Institute Prague


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: USA: MD

ncbi_isolation_source: Paprika

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_isolation_source: terrestrial

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: Germany: Hesse; Gross-Gerau

ncbi_isolation_source: swab WC edge inside

ncbi_organism_name: Escherichia coli

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella nigrescens

ncbi_submitter: J. Craig Venter Institute


ncbi_submitter: Universidad de Zaragoza


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria elongata

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Zhengzhou

ncbi_isolation_source: stool

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Neisseria polysaccharea


ncbi_assembly_name: Rumen uncultured genome RUG10553

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lysobacter enzymogenes


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Pseudophaeobacter sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Carnobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: Italy: Florence

ncbi_isolation_source: bronchoaspiration material

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: USA: West Dundee; Illinois

ncbi_isolation_source: sink

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: United Arab Emirates University


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-1025

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Veillonella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Faecalibaculum rodentium


ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: South Korea: Han river

ncbi_isolation_source: freshwater cyanobloom

ncbi_organism_name: Paucibacter sp. B51

ncbi_submitter: Korea University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Serinicoccus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: culture

ncbi_submitter: University of Zurich


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: FL; Ft. Lauderdale

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pseudoalteromonas sp. Of7M-16

ncbi_submitter: Meyer Microbes Lab


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_isolation_source: lung; liver; and kidney sample

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus UCIM6047

ncbi_submitter: Broad Institute


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1452


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Inner Mongolia Medical University


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: South Korea: Suwon

ncbi_organism_name: Xanthomonas citri pv. glycines

ncbi_submitter: National Institute of Crop Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. glycines


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_assembly_name: IMG-taxon 2693429786 annotated assembly

ncbi_organism_name: Bradyrhizobium lablabi

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: take-all decline soil

ncbi_organism_name: Pseudomonas chlororaphis subsp. piscium

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. piscium


ncbi_organism_name: Sphingobacterium paludis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 1073

ncbi_organism_name: Lentisphaerota bacterium

ncbi_strain_identifiers: CIM:MAG 1073

ncbi_submitter: Mayo Clinic

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_country: China: Huizhou

ncbi_isolation_source: seawater

ncbi_organism_name: Thiotrichales bacterium 19S9-12

ncbi_submitter: Guangdong Provincial Hospital of Traditional Chinese Medicine


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Gaiellaceae bacterium


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Corynebacterium casei

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. 418I7

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 418I7


ncbi_organism_name: Endozoicomonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: Frankiaceae bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces canus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Chitinispirillaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: cecum

ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: China Agricultural University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Veillonella ratti

ncbi_submitter: University of Chicago


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_organism_name: Eubacterium sp.


ncbi_country: Canada

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG15

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_strain_identifiers: labscale reactor_MAG15

ncbi_submitter: TU Delft


ncbi_country: USA

ncbi_isolation_source: Unknown

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: blood

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Veillonella tobetsuensis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Guangxi

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Nitratifractor sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_submitter: Wellcome Trust Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. D23580


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0082

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The First Affiliated Hospital of Medical College, Zhejiang University


ncbi_country: Switzerland

ncbi_isolation_source: milk sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_country: China

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Sir Run Run Shaw Hospital


gtdb_type_species_of_genus: t

ncbi_isolation_source: acidic forest soil

ncbi_organism_name: Methylovirgula ligni

ncbi_submitter: Chungbuk National University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_country: Canada: Montreal

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Qinghai-Tibet Plateau

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces pactum

ncbi_submitter: Northwest A&F Unversity


ncbi_assembly_name: IMG-taxon 2724679804 annotated assembly

ncbi_organism_name: Oceanospirillum linum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia: Sydney

ncbi_isolation_source: Influent wastewater

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of New South Wales


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus sp. GC40

ncbi_submitter: Northwest A & F University


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_country: Cameroon: Boteva

ncbi_isolation_source: Cocoyam rhizosphere (white)

ncbi_organism_name: Pseudomonas sp. COW5

ncbi_submitter: KU Leuven


ncbi_isolation_source: cold seep

ncbi_organism_name: Croceicoccus sp. YJ47

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Central venous catheter

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_country: Sri Lanka:Rathnapura

ncbi_isolation_source: blood

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Rajarata University of Sri lanka


ncbi_country: China: Beijing

ncbi_isolation_source: patients

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_assembly_name: Escherichia coli CVM N41556PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N41556PS

ncbi_submitter: FDA


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: Colon

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: raw fermented sausage

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: Pasteurized milk

ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: Cornell University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_submitter: Saint-Louis Hospital


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Belgium: Botanic Garden Meise

ncbi_isolation_source: leaf nodules

ncbi_submitter: University of Zurich


ncbi_isolation_source: Faeces


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Brazil: Paraiba

ncbi_isolation_source: goat milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LAPOA-Federal University of Paraiba (UFPB)


ncbi_country: United Kingdom: Newcastle

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux


ncbi_submitter: University of Verona, Italy


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: faeces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Quadram Bioscience Institute


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Arsukibacterium sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Kenya: Kisumu

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: JMI Laboratories


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_country: Australia: Five Islands

ncbi_submitter: OUTBREAK


ncbi_country: Qatar

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Qatar University


ncbi_organism_name: Staphylococcus saccharolyticus


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Palmer LTER


ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: bglFP 6793

ncbi_submitter: University of Amsterdam


ncbi_isolate: AOP14_B2_surf _bin _7

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: AOP14_B2_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Michigan


ncbi_isolate: AOP33_2_surf _bin _23

ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_strain_identifiers: AOP33_2_surf _bin _23


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Tianjin University of Science and Technology


ncbi_organism_name: Pseudarthrobacter oxydans


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5330

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5330


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Thailand

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Kasetsart University


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Brevibacillus agri

ncbi_submitter: the seqafrica consortium


ncbi_assembly_name: freshwater MAG --- A14_bin-2942

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Cyanobacteria bacterium B1Sed10_56

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium B1Sed10_56


ncbi_organism_name: Cyanobacteria bacterium J06631_12

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06631_12


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-474-04_S3_C2

ncbi_submitter: IGS


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1406589

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: WA

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_assembly_name: Rumen uncultured genome RUG14402

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Microbacterium oxydans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Pre-slaughter chicken

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Thermus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Henan

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Maritimibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Arcticimaribacter;x__unclassified Candidatus Arcticimaribacter;s__Candidatus Arcticimaribacter sp. UBA7428


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Octapeptin C4

ncbi_submitter: The University of Queensland


ncbi_country: Nepal

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: University Hospital Center and University of Lausanne


ncbi_country: Uruguay: Artigas

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: INRS - Institut Armand-Frappier


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Rhizobacter sp. Root1221

ncbi_submitter: Max Planck Institute for Plant Breeding Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp. Root1221


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P92P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: blood from patient with acute articula rheumatism

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_country: Czech Republic

ncbi_isolate: Bordetella pertussis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_strain_identifiers: BP6260;Bordetella pertussis

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences, v.v.i.


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: lesion

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Tennessee


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: James Cook University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospira sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: University of Plovdiv


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_submitter: University of Texas at Dallas


ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Choleraesuis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 221

ncbi_organism_name: Staphylococcus cohnii

ncbi_strain_identifiers: SNUC 1071

ncbi_submitter: University of Calgary


ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacteroides uniformis CL03T00C23

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Australia: Liverpool

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: La Trobe University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: Infant 2 DOL 11 gut

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Hangzhou

ncbi_isolation_source: Ditch

ncbi_organism_name: Chromobacterium haemolyticum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_assembly_name: Rhizobiales bacterium Ga0074135

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Rhizobiales bacterium Ga0074135

ncbi_submitter: University of Glasgow


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: chicken

ncbi_organism_name: Clostridium perfringens


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Limosilactobacillus oris PB013-T2-3

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Ibaraki University


ncbi_organism_name: Pseudobutyrivibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: (MIX) marine epipelagic mixed layer

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_country: China: Chaohu Lake

ncbi_isolation_source: eutrophic water

ncbi_organism_name: Microcystis aeruginosa CHAOHU 1326

ncbi_strain_identifiers: CHAOHU 1326

ncbi_submitter: Shandong University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter defluvii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: GSFC University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Salmonella sp. NW103

ncbi_submitter: Sichuan University


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_organism_name: Elusimicrobia bacterium RBG_16_66_12

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;x__unclassified Elusimicrobiota;s__Elusimicrobia bacterium RBG_16_66_12


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Roseivirgaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG12692

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Medical University of Gdansk


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Japan

ncbi_isolation_source: feces; 3 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Roseburia faecis

ncbi_submitter: bioBiome, Inc.


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with retrograde maize

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-1311

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Francisella orientalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;s__Candidatus Negativibacillus faecipullorum


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: University of Utah


ncbi_country: China: Wuhan

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG176

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Tissierellaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: illeum

ncbi_organism_name: Mycobacterium avium subsp. avium DT 78

ncbi_strain_identifiers: DT 78

ncbi_submitter: University of Wisconsin- Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. avium;x__Mycobacterium avium subsp. avium DT 78


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The First Hospital of Lanzhou University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Netherlands: Flevoland; Emmeloord

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Cypionkella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shanxi

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shanghai Hongkou District Center for Disease Control and Prevention


ncbi_country: China: Hubei province

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_strain_identifiers: HT 20

ncbi_submitter: Shihezi University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis ERV72

ncbi_submitter: Washington University


ncbi_organism_name: Nitrosomonadaceae bacterium


ncbi_country: United Kingdom:Wales

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Acholeplasmataceae bacterium


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: Single cell amplified by MDA; raw seawater

ncbi_organism_name: Prochlorococcus sp. HOT212_60m_826P21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 2 10 to 15cm

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Northeastern University


ncbi_country: China: Nanjing

ncbi_isolation_source: clinically healthy pig

ncbi_organism_name: Streptococcus suis


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Cologne

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Russia: Novgorod

ncbi_isolation_source: spring water

ncbi_organism_name: Dethiosulfovibrio russensis

ncbi_submitter: Marquette University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Helsinki


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: Zhejiang university


ncbi_country: Portugal: Porto

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_organism_name: Bacillus cereus VD140

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus VD140


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD7022

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Hong Kong

ncbi_isolation_source: sediment

ncbi_organism_name: Escherichia sp. E10V10

ncbi_submitter: The Hong Kong University of Science and Technology


ncbi_country: USA: Pittsburgh; PA

ncbi_isolation_source: leg wound

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Candidatus Acididesulfobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acididesulfobacter;x__unclassified Candidatus Acididesulfobacter;s__Candidatus Acididesulfobacter sp.


ncbi_organism_name: Salmonella sp. LS2020056sal


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-2366

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Butyricimonas faecihominis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Candidatus Ventricola intestinavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;s__Candidatus Ventricola intestinavium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-0333

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- MJ110927B_bin-543


ncbi_organism_name: Winogradskyella sp. 4-2091

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Aequorivita sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Elusimicrobia bacterium GWA2_69_24

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;x__unclassified Elusimicrobiota;s__Elusimicrobia bacterium GWA2_69_24


ncbi_isolation_source: Caecum


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-0293


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_country: China: Shuikoushan; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: South china normal university


ncbi_isolation_source: Biopesticide B401/B402 (Certan); Vita-Swarm

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Malaysia: Sabah

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Borneo Medical and Health Research Centre


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. PDM24

ncbi_submitter: University of Chicago


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_assembly_name: LM06-00727 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: Rochester

ncbi_isolation_source: swab of cloaca

ncbi_organism_name: Kluyvera cryocrescens

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Aricultural University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_country: Switzerland

ncbi_isolation_source: environmental swab veterinary clinic

ncbi_organism_name: Enterobacter sp. MV-r1-C


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Wyoming


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-41

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_strain_identifiers: new MAG-41

ncbi_submitter: Micoorganism


ncbi_organism_name: Alkalihalobacillus alcalophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Japan:Mie; Ise bay

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Echinicola sp. 20G

ncbi_submitter: Graduate School of Bioresources, Mie University


ncbi_organism_name: Caballeronia sp. LZ001

ncbi_submitter: University of Texas at Arlington


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Indonesia: Sulawesi Island; Lake Matano

ncbi_isolate: GT-UBC

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodocyclales bacterium GT-UBC

ncbi_strain_identifiers: GT-UBC

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: Top soil

ncbi_organism_name: Paraburkholderia nemoris

ncbi_submitter: GHENT UNIVERSITY


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Australia: Newcastle

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-404-N13

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Ireland

ncbi_isolation_source: Food and food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_isolate: Alteromonas macleodii BGP14

ncbi_isolation_source: alginate-supplemented microcosm

ncbi_organism_name: Alteromonas macleodii

ncbi_strain_identifiers: Alteromonas macleodii BGP14

ncbi_submitter: Institute for Chemistry and Biology of the Marine Environment


ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium


ncbi_country: China

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: Cabernet Sauvignon

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Vibrio parahaemolyticus UCM-V493

ncbi_submitter: University of Delaware

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus UCM-V493


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Xanthomonas sp. LF07-6

ncbi_submitter: Institute of Agricultural Resources and Regional Planning,CAAS


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 250

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Clermont; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0468R

ncbi_submitter: Broad Institute


ncbi_country: China: Hunan; Huangshaping

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Panjin

ncbi_organism_name: Aminobacter anthyllidis

ncbi_submitter: dalian university of technology


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3160-1


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: chicken carcass

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Florida

ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Ottawa Research and Development Center


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Comamonas aquatica

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin S2.13

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Delongbacteria bacterium

ncbi_strain_identifiers: bin S2.13

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Delongiibacteriota;x__unclassified Candidatus Delongbacteria;s__Candidatus Delongbacteria bacterium


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_country: Japan: Izu Oshima

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas allokribbensis

ncbi_submitter: Juntendo University


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Escherichia coli MS 185-1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: McGill University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_organism_name: Maribacter arcticus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Argentina

ncbi_isolation_source: outbreak

ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: BrChau

ncbi_submitter: Northern Arizona University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Halioglobus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: Bangladesh: Dhaka

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Dhaka


ncbi_country: USA: KS

ncbi_isolation_source: bovine liver abscess

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: stool

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: Serratia ficaria

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: CANDO+P Bioreactor

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Denmark: Kolind

ncbi_isolation_source: gingival mucosa

ncbi_organism_name: Ursidibacter maritimus

ncbi_strain_identifiers: Lady

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces lunaelactis

ncbi_submitter: Center for Protein Engineering


ncbi_organism_name: Mycoplasmopsis cynos

ncbi_submitter: University of Guelph


ncbi_country: Israel: Tel Aviv Sourasky Medical Center

ncbi_isolation_source: urine of male patient

ncbi_submitter: Tel Aviv Sourasky Medical center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae ST258;x__Klebsiella pneumoniae subsp. pneumoniae ST258-490


ncbi_country: Australia

ncbi_isolation_source: blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_isolation_source: Ear discharge

ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: GHENT UNIVERSITY


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Aquifex aeolicus

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Ja_bin-1711

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pandoraea pneumonica

ncbi_submitter: Hainan General Hospital


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Clostridium] scindens


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Fervidobacterium nodosum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Salmonella sp. SKLX062317


ncbi_organism_name: Sulfitobacter sp. 1A15299

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Blautia obeum


ncbi_organism_name: uncultured Marinoscillum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Planococcus plakortidis

ncbi_submitter: university of karachi


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Sinimarinibacterium flocculans

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Baskent University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_organism_name: Castellaniella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Italy: Bay of Fetovaia; Elba

ncbi_isolation_source: gill tissue of clam

ncbi_organism_name: Candidatus Thiodiazotropha endoloripes

ncbi_submitter: University of Vienna


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Japan

ncbi_isolation_source: Rat feces

ncbi_organism_name: Butyricimonas synergistica DSM 23225

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Odoribacteraceae;g__Butyricimonas;s__Butyricimonas synergistica;x__Butyricimonas synergistica DSM 23225


ncbi_country: China: Guide

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B3831

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: Denmark

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_country: Greece: Thessaloniki

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Karolinska Insitutet


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter cumulans

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Streptococcus canis

ncbi_submitter: University of Glasgow


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: disinfectant-free drinking water; site 2

ncbi_organism_name: Solirubrobacterales bacterium


ncbi_country: USA:Colorado; Denver; Cherry Creek underneath Market street bridge

ncbi_isolate: MKT

ncbi_isolation_source: Sediment of Cherry Creek; enriched in culture for about 1.5 years

ncbi_organism_name: Candidatus Nitrotoga sp. MKT

ncbi_strain_identifiers: MKT

ncbi_submitter: University of Colorado Denver

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp. MKT


ncbi_isolation_source: Deep sea water

ncbi_organism_name: Micromonospora sp. AKA109

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Ethiopia: Amhara; East Gojjam

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Egypt

ncbi_submitter: bioMerieux


ncbi_organism_name: Oscillibacter sp.


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Colon


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus JKD6159


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Yoonia sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: India

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_country: USA: MI

ncbi_isolation_source: Beef Cows

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N59589F

ncbi_submitter: FDA


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW704-E3

ncbi_submitter: Arkin Lab


ncbi_country: Tanzania: Dar es Salaam

ncbi_isolation_source: patient in hospital

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bergen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lausanne University Hospital


ncbi_assembly_name: Pseudomonas aeruginosa

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Metalachnospira gallinarum

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Metalachnospira;s__Candidatus Metalachnospira gallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Metalachnospira;s__Candidatus Metalachnospira gallinarum


ncbi_country: Brazil

ncbi_isolation_source: soil

ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: University of Brasilia


ncbi_country: South Korea: Hwaseong-si

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yonsei University College of medicine


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Peptoniphilus grossensis


ncbi_organism_name: Paenibacillus sp.

ncbi_submitter: Indian Institute of Technology Kharagpur


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella histicola

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Tongji University


ncbi_country: USA: California; Modesto

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Spain

ncbi_isolation_source: Medical

ncbi_submitter: Instituto de Investigacion Sanitaria y Biomedica de Alicante


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Faecalibaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella sp. S015_62597

ncbi_submitter: Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Pseudomonas sp. RL_15y_Pfl2_60

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen