ncbi_organism_name: Algiphilus sp.

ncbi_submitter: Southern University of Science and Technology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: EMG


ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_level: Scaffold

ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Candidatus Brocadia sapporoensis

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__Candidatus Brocadia sapporoensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__Candidatus Brocadia sapporoensis


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_organism_name: Phaeobacter bryozoorum

ncbi_submitter: Technical university of Denmark


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Rothia sp. CCM 9416

ncbi_submitter: Masaryk University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. CCM 9416


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: bark

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: DNASense ApS


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Streptococcus parasanguinis


ncbi_organism_name: Staphylococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Iran

ncbi_organism_name: Mycobacterium tuberculosis NRITLD20

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing; Jiangsu

ncbi_isolation_source: droppings

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: APEC DE058

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: China: Shanghai

ncbi_isolation_source: hospital

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Ruijin Hospital, Shanghai Jiaotong University School of Medicine


ncbi_country: Denmark: Copenhangen

ncbi_isolation_source: enrichment reactor seeded with activated sludge

ncbi_organism_name: Candidatus Fermentibacter danicus

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus


ncbi_country: China: Qixian; Shizhong; Jinan

ncbi_isolation_source: a Fusarium oxysporium growth plate

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Unversity of Jinan


ncbi_organism_name: Buttiauxella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Kazan

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kazan Federal University


ncbi_country: Czech Republic: Netluky

ncbi_isolation_source: Cow stool; the floor of a livestock farm

ncbi_organism_name: Acinetobacter amyesii

ncbi_submitter: National Institute of Public Health


ncbi_country: Guatemala

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Venezuela

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_isolate: Prospectively collected (P)

ncbi_isolation_source: Blood

ncbi_strain_identifiers: Prospectively collected (P)

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_country: China: Hubei

ncbi_isolation_source: catheter

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Wuhan CDC


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Xiapu

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 25493_2

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Palmer Alaska

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Candidatus Alcium sp. P201

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Alcium;x__unclassified Candidatus Alcium;s__Candidatus Alcium sp. P201


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Japan: Pacific Ocean

ncbi_isolation_source: Sea water (open ocean)

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Jiangnan university


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Frankia sp. CIT1

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: McGill University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Shenzhen

ncbi_organism_name: Microbulbifer aggregans

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Sphingobacterium multivorum


ncbi_country: China: Beijing

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: uncultured Leptospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Variovorax sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Lactococcus cremoris subsp. cremoris HP

ncbi_strain_identifiers: HP

ncbi_submitter: University College Cork

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus cremoris;sb__Lactococcus cremoris subsp. cremoris;x__Lactococcus cremoris subsp. cremoris HP

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Arcobacter cryaerophilus gv. pseudocryaerophilus

ncbi_strain_identifiers: LEO 79

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bifidobacterium asteroides


ncbi_submitter: East China Normal University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Australia: Rockhampton

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli O25b:H4

ncbi_submitter: Public Health Agency of Sweden


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: South China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: Peru


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: France: Tregastel

ncbi_organism_name: Pseudomonas sp. TREG-RG-20F-10-E-6-01

ncbi_submitter: INRAE


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Ghana: Accra

ncbi_isolation_source: mid-stream urine sample

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA: Arizona

ncbi_isolation_source: trach asp

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EBI


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Italy

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Udine


ncbi_organism_name: Xanthomonas campestris pv. leeana

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_assembly_name: Rumen uncultured genome RUG12992

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12349

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: University of Sheffield


ncbi_organism_name: Candidatus Fimisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimisoma;x__unclassified Candidatus Fimisoma;s__Candidatus Fimisoma sp.


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Candidatus Enterococcus avicola

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Legionella sp. D16C41

ncbi_submitter: Shenzhen Center for Disease Control and Prevention


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Parma


ncbi_organism_name: Pseudomonas sp. 18173

ncbi_submitter: Beijing Forestry University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured cyanobacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: vaginal metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Idaho; Kimberly

ncbi_organism_name: Rhizobium sp. Kim5

ncbi_submitter: Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico


ncbi_assembly_name: Rumen uncultured genome RUG13817

ncbi_organism_name: Candidatus Ruminimicrobiellum tauri

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: Germany: Paulinaue; Brandenburg

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Robert Koch Institute


ncbi_country: Oman

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rennes Hospital


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Tecnologico Nacional de Mexico/IT de Ursulo Galvan


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Antarctica: Fildes Peninsula; King George Islands; South Shetland Island

ncbi_isolation_source: Fresh water lagoon

ncbi_organism_name: Pseudomonas sp. IB20

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_organism_name: Gleimia hominis

ncbi_refseq_category: reference genome

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: stool

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CDC


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: The University of Queensland


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Barnesiella sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Saccharimonadaceae bacterium

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;x__unclassified Candidatus Saccharimonadaceae;s__Candidatus Saccharimonadaceae bacterium


ncbi_country: Canada: Mont-Saint-Hilaire (QC)

ncbi_isolation_source: tree leaf surface

ncbi_organism_name: Methylobacterium sp. E-046

ncbi_submitter: Universite du Quebec a Montreal


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Czech Republic

ncbi_submitter: Charles University in Prague


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG10892

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Lactobacillus rizhaonensis

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: EBI


ncbi_country: USA: Boston; MA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M0857

ncbi_submitter: Broad Institute


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: University of Aberdeen


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Nagoya University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Erwinia amylovora Ea266

ncbi_submitter: CeBiTec


ncbi_country: Chile

ncbi_isolation_source: Oxygen minimum zone

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: Princeton University


ncbi_country: USA: North Dakota

ncbi_isolation_source: fatal septicaemia and septic arthritis in a 16-month-old American-Indian girl who had no risk factors associated with health care

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: USA: FL

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Milk powder plant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea water

ncbi_organism_name: Aliidiomarina indica

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Psychrobacter urativorans

ncbi_strain_identifiers: CCUG 4982

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Haiti: Cholera Treatment Center; Gressier

ncbi_isolation_source: Stool; Clinical

ncbi_organism_name: Vibrio cholerae


ncbi_country: Italy

ncbi_isolation_source: Not known

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Utrecht University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Denmark: Sydhavn Recycling center; compost

ncbi_isolation_source: compost

ncbi_organism_name: Sphingopyxis sp. PET50

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: USA: Conservancy Park Belleview Lake

ncbi_isolation_source: surface water collection during the late summer

ncbi_organism_name: Roseomonas sp. GC11

ncbi_submitter: Northern Kentucky University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: MD

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Prevotella pallens


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: burned soil

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: University of Aberdeen


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 103

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: SNUC 115

ncbi_submitter: University of Calgary


ncbi_organism_name: Mesorhizobium sp. M1088

ncbi_submitter: Washington State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_country: China

ncbi_isolation_source: hot spring

ncbi_organism_name: Pseudothauera hydrothermalis

ncbi_submitter: institute of microbiology


ncbi_organism_name: Nostoc sp. UCD120

ncbi_submitter: University of Missouri-St. Louis


ncbi_organism_name: Hansschlegelia sp. KR7-227

ncbi_submitter: Kyonggi university


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Borreliella spielmanii A14S

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Hathewaya histolytica

ncbi_submitter: SC


ncbi_country: Czech Republic: Pribram

ncbi_isolation_source: Vaginal swab

ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_strain_identifiers: NIPH 713

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterococcus casseliflavus


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Shigella sonnei

ncbi_submitter: kyungpook national university


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome RUG13606

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Milan


ncbi_organism_name: Sphingomonas sp. DC6200-2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SBM Research Institute of Rospotrebnadzor


ncbi_isolate: AOP7_A2_surf _bin _15

ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_strain_identifiers: AOP7_A2_surf _bin _15

ncbi_submitter: Genoscope


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_submitter: Maynooth University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Huanggang Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Terracidiphilus sp.


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 7806

ncbi_submitter: University of Warwick


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_organism_name: Faecalimonas sp.


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Moritella sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Guangdong

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_country: Taiwan

ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis OFXR-32

ncbi_submitter: Broad Institute


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Christiangramia sp.

ncbi_submitter: Harvard University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Oceanithermus desulfurans

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Cupriavidus alkaliphilus


ncbi_country: USA

ncbi_isolation_source: mobile phone

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Orissa University of Agriculture & Technology


ncbi_organism_name: Micromonospora rifamycinica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Faucicola osloensis

ncbi_submitter: bioBiome, Inc.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Fujian

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_isolation_source: stool sample

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Netherlands: Texel

ncbi_isolation_source: hemolymph

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: sheep gut metagenome


ncbi_country: USA: Oregon

ncbi_isolation_source: cheese processing environment

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Oregon State University


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: United Kingdom: Island of Anglesey; North Wales

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Comamonas kerstersii


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG13699

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Methylocystis sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Kitasatospora sp. NPDC002040

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Pau University


ncbi_country: China: Tibetan Autonomous County of Tianzhu

ncbi_isolation_source: jugular vein blood

ncbi_organism_name: Brucella melitensis

ncbi_strain_identifiers: TZ

ncbi_submitter: Huazhong Angricultural University


ncbi_isolation_source: Pre-flight (to International Space Station) Astronaut Skin Swab

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0802

ncbi_submitter: Broad Institute


ncbi_organism_name: Mesorhizobium ciceri

ncbi_submitter: Murdoch University


ncbi_submitter: HOSPITAL UNIVERSITARIO DONOSTIA


ncbi_organism_name: Shewanella sp. PP-He15 brown

ncbi_strain_identifiers: PP-He15 brown

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Portland State University


ncbi_country: Japan

ncbi_isolation_source: middle urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho university


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_assembly_name: freshwater MAG --- B4coas_bin-1199

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Fusobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Broiler parent107

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: marine

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_organism_name: Burkholderia anthina

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_organism_name: Cardiobacterium hominis


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Romboutsia sp. 1001216sp1

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D9_bin-0973

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Lentisphaerota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__environmental samples;s__uncultured Lentisphaerota bacterium


ncbi_organism_name: uncultured Opitutaceae bacterium


ncbi_organism_name: Hydrogenophaga sp. ANAO-22

ncbi_submitter: Kyushu University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides fragilis


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_strain_identifiers: Fiocruz LV4225

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans str. Fiocruz LV4225


ncbi_organism_name: Pseudonocardia alni

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides xylanisolvens


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: University of British Columbia


ncbi_organism_name: Sphingobacterium siyangense

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Environmental Science and Research


ncbi_country: Japan:Arima Onsen

ncbi_organism_name: Rhodothermus marinus

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Agrobacterium radiobacter

ncbi_strain_identifiers: SEMIA 440

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Candidatus Eremiobacteraceae bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Candidatus Eremiobacterales;f__Candidatus Eremiobacteraceae;x__unclassified Candidatus Eremiobacteraceae;s__Candidatus Eremiobacteraceae bacterium


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_AE_2

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Nocardia sp. NPDC047654


ncbi_organism_name: Pseudomonas sp. NY15356

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Tigheibacillus halophilus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of South Africa


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Institute of Biochemistry and Biophysics, Polish Academy of Sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Planctomycetota bacterium


ncbi_organism_name: Yoonia sp.

ncbi_submitter: Yantai University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Haiti

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CDC


ncbi_organism_name: Staphylococcus aureus M0324

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Kunming Medical University


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Planktothrix agardhii

ncbi_submitter: Justus Liebig Universitat


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Anhui; Wuhu

ncbi_organism_name: Sulfobacillus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: Cambridge; Massachusetts

ncbi_isolation_source: tongue oral cavity

ncbi_organism_name: Streptococcus sp. oral taxon 061

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__unclassified Streptococcus;s__Streptococcus sp. oral taxon 061


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Nigeria: Kebbi

ncbi_organism_name: Ochrobactrum sp. 721/2009

ncbi_submitter: USDA-ARS


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: bacterium HR34

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_assembly_name: Halomonas sp. strain Alg239-R46

ncbi_organism_name: Halomonas sp. Alg239-R46

ncbi_submitter: iBB-IST


ncbi_submitter: Universiteit Gent


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Weissella confusa

ncbi_submitter: Makerere University College of Health Sciences


ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Brown University


ncbi_organism_name: Mycobacterium paraterrae

ncbi_submitter: Research Institute of Tuberculosis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Vagococcus salmoninarum


ncbi_country: South Korea

ncbi_isolation_source: mussel

ncbi_organism_name: Glaciecola sp. MH2013

ncbi_submitter: Kyonggi university


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. AM31-2AC

ncbi_submitter: BGI


ncbi_country: Netherlands

ncbi_isolation_source: grass shoots

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wageningen University & Research


ncbi_country: USA: St. Louis

ncbi_isolation_source: organic material

ncbi_organism_name: Staphylococcus sp. ZWU0021

ncbi_submitter: University of Oregon


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: terrestrial

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.


ncbi_country: China

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Germany

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: University Hospital Dresden


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: cold seep

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Paenibacillus lactis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division CPR2;s__candidate division CPR2 bacterium GW2011_GWC2_39_35


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 11890

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_assembly_name: IMG-taxon 2724679820 annotated assembly

ncbi_organism_name: Muriicola jejuensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UNIVERSITY OF HELSINKI


ncbi_assembly_name: De novo Assembly

ncbi_country: Malaysia

ncbi_isolation_source: tongue

ncbi_organism_name: Enterobacter sp. T1-1

ncbi_submitter: University of Malaya


ncbi_assembly_name: freshwater MAG --- Loc090721-6m_bin-776

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_submitter: University of Queensland


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Denmark: Odense

ncbi_isolation_source: Fecal isolate

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Odense University Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;s__Berkelbacteria bacterium GW2011_GWA2_35_9


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: USA: Rutgers

ncbi_isolation_source: seawater

ncbi_organism_name: Labrenzia sp. CP4

ncbi_submitter: Naval Research Laboratory


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_country: Japan

ncbi_isolation_source: open abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho university


ncbi_organism_name: Planobispora takensis

ncbi_strain_identifiers: TBRC 4238

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Vulcanimicrobiaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Streptococcus gallolyticus subsp. gallolyticus

ncbi_submitter: Genopole Institut Pasteur


ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: WTSI


ncbi_country: Sweden

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Jiangsu

ncbi_isolation_source: blood


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Candidatus Poriferisodalaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. SKLX063170

ncbi_submitter: Zhejiang university


ncbi_organism_name: Inhella sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto de Biomedicina de Sevilla (IBIS)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Galway


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Enorma sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: JAMSTEC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-a_bin-362

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Beijing

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Peking University


ncbi_country: USA: Michigan

ncbi_organism_name: Rhodococcoides fascians 02-816c

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: USA: San Joaquin County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_country: Poland: Warsaw

ncbi_isolation_source: raw sewage

ncbi_organism_name: Ochrobactrum sp. POC9

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: VA

ncbi_organism_name: Shigella boydii

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Niallia sp. FSL K6-0212

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Niallia;x__unclassified Niallia;s__Niallia sp. FSL K6-0212


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Palmer LTER


ncbi_country: Greece: Epirus

ncbi_isolation_source: raw sheep milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: France

ncbi_isolation_source: 88-year old man presenting knee prosthesis infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LNCC


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Dr. D. Y. Patil Medical College, (DPU)


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_strain_identifiers: clinical 3

ncbi_submitter: University of Washington


ncbi_assembly_name: freshwater MAG --- AlinenSediments_bin-0833

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_organism_name: Diaphorobacter nitroreducens


ncbi_organism_name: Enterobacter kobei

ncbi_strain_identifiers: 65f fall

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Poultry

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Pseudobutyrivibrio sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_assembly_name: Rumen uncultured genome RUG12812

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Poland

ncbi_organism_name: Citrobacter sp. wls757

ncbi_submitter: NanKai universit


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22903;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: soil from Salvador

ncbi_organism_name: Streptomyces violaceoruber

ncbi_strain_identifiers: NRRL S-12

ncbi_submitter: University of Illinois


ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_strain_identifiers: DPPM

ncbi_submitter: University of Nebraska-Lincoln


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0170

ncbi_submitter: Broad Institute


ncbi_organism_name: Chromohalobacter sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus faecium EnGen0152


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Stony Brook University


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: marine

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: leaf

ncbi_organism_name: Sphingomonas sp. Leaf230

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Paraglaciecola sp.

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Corynebacterium sp. HMSC05E07

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: India: Vaccine Institute; Gandhinagar; Gujarat

ncbi_isolation_source: blood of buffalo calf after artificial infection with haemorrhagic septicemi causing organism; Pasteurella multocida

ncbi_submitter: Anand Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Pasteurella;s__Pasteurella multocida;sb__Pasteurella multocida subsp. multocida;x__Pasteurella multocida subsp. multocida str. P52VAC


ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Thermoflexus sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Portugal: The Azores

ncbi_isolation_source: hot spring

ncbi_strain_identifiers: Rib

ncbi_submitter: University of Bergen

ncbi_taxonomy: d__Bacteria;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);s__Candidatus Methylacidiphilum fumarolicum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);s__Candidatus Methylacidiphilum fumarolicum


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: University of Utah


ncbi_country: China

ncbi_organism_name: Paenimyroides tangerinum

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Yersinia pestis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Aeromonas sobria

ncbi_submitter: University of Connecticut Graf Lab


ncbi_country: Pakistan: Karak

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: National University of sciences and technology


ncbi_country: China: Beijing

ncbi_organism_name: Lentihominibacter faecis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bradyrhizobium sp. SZCCHNPS2010

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Lactiplantibacillus argentoratensis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Nostoc sp. HK-01

ncbi_submitter: Toyohashi University of Technology


ncbi_organism_name: Prochlorococcus marinus str. MIT 9313

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Prochlorococcaceae;g__Prochlorococcus;s__Prochlorococcus marinus;x__Prochlorococcus marinus str. MIT 9313


ncbi_isolation_source: mediterranean sea - sea grass bed

ncbi_organism_name: Posidoniimonas corsicana

ncbi_submitter: Leibniz-Institute DSMZ German Collection of Microorganisms and Cell Cultures


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Morganella morganii

ncbi_submitter: Agroscope


ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Cornell University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SC


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H3361

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Rhode Island


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolate: MAG 102

ncbi_isolation_source: hydrothermal vent

ncbi_strain_identifiers: MAG 102

ncbi_submitter: WHOI


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_organism_name: Mycoplasma sp. T193

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_country: Denmark

ncbi_isolation_source: Hospital

ncbi_organism_name: Escherichia coli

ncbi_submitter: DTU


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: CAU


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany

ncbi_organism_name: Borreliella bavariensis

ncbi_strain_identifiers: PBN

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Blautia obeum

ncbi_submitter: BGI


ncbi_country: Australia: Clermont; QLD

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Rochester; Minnesota

ncbi_isolation_source: Associated Infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Mayo Clinic


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Pseudomonas sp. UBA6310


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolate: AOP1_C1_surf _bin _14

ncbi_organism_name: Agrococcus casei

ncbi_strain_identifiers: AOP1_C1_surf _bin _14

ncbi_submitter: Genoscope


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: catheter

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: isolated from Haemaphysalis concinna

ncbi_submitter: Department of Bacteriology, Faculty of Medical Scineces, Kyushu University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. heilongjiangensis


ncbi_country: Afghanistan

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: USA: Stillwater; Oklahoma

ncbi_isolation_source: ACCM-D media

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: Cb NMII RSA 439 passage 03

ncbi_submitter: Oklahoma state university


ncbi_country: USA: International Space Station

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Iran

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Vali-e-Asr University of Rafsanjan


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Pseudomonas sp. zfem003

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: clinical material

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Finland: University of Jyvaskyla

ncbi_isolation_source: experimental exposure to phage

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: human skin

ncbi_organism_name: Staphylococcus auricularis

ncbi_submitter: NIH/NHGRI


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Japan

ncbi_isolation_source: water

ncbi_organism_name: Aquitalea magnusonii

ncbi_submitter: Bio-Environmental Engineering Lab, Department of Sustainable Energy and environmental Engineering, Graduate School of Engineering, Osaka university


ncbi_organism_name: Staphylococcus aureus subsp. aureus H19

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus H19


ncbi_country: Georgia

ncbi_isolation_source: Fish tissue

ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: University of Georgia


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Shaanxi

ncbi_isolation_source: farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: USA: KY

ncbi_isolation_source: pleural

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: USAMRIID


ncbi_organism_name: Kitasatospora sp. NBC_01302

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Anode biofilm

ncbi_organism_name: Bacteroidales bacterium UBA7705

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA7705


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: Austria

ncbi_isolation_source: joint

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter suis

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Hangzhou

ncbi_organism_name: Dickeya fangzhongdai

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Ocean University of China


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rhodovulum bhavnagarense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus sp. EU62

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. EU62


ncbi_organism_name: Ochrobactrum sp. RH1CCR137


ncbi_organism_name: Tsuneonella deserti

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: bacterium

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: ovine 3 year old female brain


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Candidatus Apopatosoma intestinale

ncbi_submitter: Stanford University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Apopatosoma;s__Candidatus Apopatosoma intestinale


ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Escherichia coli

ncbi_submitter: Maynooth University


ncbi_organism_name: [Clostridium] leptum


ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Reyranella sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Marinicellaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Sphingorhabdus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang Cancer Hospital


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- Loclat_bin-17915

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_submitter: national health research institutes


ncbi_organism_name: Salmonella sp. 2018-SM11

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_assembly_name: Rumen uncultured genome RUG14698

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: EMG


ncbi_organism_name: uncultured Desulfobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-0744

ncbi_organism_name: uncultured Nitrosomonadales bacterium


ncbi_organism_name: Meridianimaribacter flavus

ncbi_submitter: Tang lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: USA: MS

ncbi_isolation_source: Clinical specimen

ncbi_organism_name: Staphylococcus aureus DAR3512

ncbi_submitter: Broad Institute


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_country: Brazil: Parana

ncbi_isolation_source: blood

ncbi_organism_name: Leptospira interrogans serovar Copenhageni

ncbi_submitter: Oswaldo Cruz Foundation


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_organism_name: uncultured Rikenella sp.


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Tunisia

ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Faculty of Sciences of Tunisia, ElManar, Laboratory of LMBA


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Linnaeus University


ncbi_organism_name: Aminobacter aminovorans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Ares Genetics


ncbi_country: Ireland: Lough Hyne

ncbi_isolation_source: marine sponge

ncbi_organism_name: Pseudovibrio sp. Ad5

ncbi_submitter: University College Cork


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Radboud University


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Colwellia sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Sphingomonas sp. 28-62-11


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_submitter: The University of Auckland


ncbi_organism_name: Rectinema sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Qatar

ncbi_isolation_source: fecal swab

ncbi_submitter: Qatar University


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Yan an

ncbi_organism_name: Brevundimonas sp. BT-123

ncbi_submitter: Yan'an University


ncbi_country: Poland

ncbi_isolation_source: poultry meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Veterinary Research Institute Brno


ncbi_country: USA: Pennsylvania

ncbi_strain_identifiers: ICE 98

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_submitter: National Medicines Institute


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Anaerococcus lactolyticus

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_submitter: ANSES


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Guangxi; Wuyi


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: KU Leuven


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0934

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: USA: Puerto Rico

ncbi_organism_name: Mycolicibacterium frederiksbergense

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Clostridia bin genome 3

ncbi_genome_representation: partial

ncbi_isolation_source: anaerobic digester metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Greece: Athens

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Karolinska Insitutet


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Alberta

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Ghana: Nyankpala site 1

ncbi_isolation_source: Kantong

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_submitter: VETUNI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: urogenital tract; vaginal

ncbi_organism_name: Lactobacillus iners ATCC 55195

ncbi_submitter: Baylor College of Medicine


ncbi_country: Malaysia: Johor

ncbi_isolation_source: BBA

ncbi_submitter: Institute for medical research


ncbi_country: South Korea: Jebu Island

ncbi_isolation_source: tidal flat

ncbi_organism_name: Palleronia caenipelagi

ncbi_submitter: Sungkyunkwan University


ncbi_country: USA: NM

ncbi_isolation_source: ground turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. N30678


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Serratia fonticola

ncbi_submitter: Wellcome Sanger Institute