ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Monash University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_assembly_level: Scaffold

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolate: SPRUCE 499

ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 499

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


gtdb_representative: f

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: CAU


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: vagina

ncbi_organism_name: Prevotella melaninogenica DNF00666

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: PCC

ncbi_submitter: Chr. Hansen A/S


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: feces

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_assembly_name: freshwater MAG --- KR_bin-3128

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_submitter: University of Idaho


ncbi_organism_name: Anaerostipes hadrus


ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: bacterium

ncbi_submitter: INRA


ncbi_country: USA: California

ncbi_isolation_source: pig ears

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM 4176


ncbi_country: South Africa:Stellenbosch

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Daviesbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;x__unclassified Candidatus Daviesbacteria;s__Candidatus Daviesbacteria bacterium


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_isolation_source: Respiratory swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Switzerland

ncbi_isolation_source: plant tissue

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Sorbonne University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium tibiigranuli

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Virginia

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Northeastern University


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Kenya

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: New Zealand: Manawatu

ncbi_isolation_source: Recto-anal Mucosal Swab (RAMS)

ncbi_submitter: mEpilab, Massey University


ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus USA300;x__Staphylococcus aureus subsp. aureus USA300_TCH959


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: Rain forest

ncbi_organism_name: Bifidobacterium sp. ESL0682

ncbi_submitter: University of Lausanne


ncbi_assembly_level: Chromosome

ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: Porphyromonadaceae bacterium UBA1069


ncbi_isolation_source: nose swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei ABCPW 91

ncbi_strain_identifiers: ABCPW 91

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Colorado

ncbi_isolation_source: uterus

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 3-073-06_S4_C1

ncbi_submitter: IGS


ncbi_submitter: SC


ncbi_isolation_source: ballast tank

ncbi_organism_name: Brevundimonas aurantiaca

ncbi_submitter: Shandong university


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: South Korea

ncbi_isolation_source: sand in sea water

ncbi_organism_name: Sneathiella sedimenti

ncbi_refseq_category: reference genome

ncbi_submitter: Chung-Ang University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: Spain: Amadorio Reservoir; Alicante

ncbi_isolation_source: freshwater biome

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Lomonosov Moscow State University, Faculty of Biology


ncbi_country: Serbia: Mladenovac

ncbi_isolation_source: maize rhizosphere

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aurantiaca


ncbi_organism_name: Archangium sp.

ncbi_submitter: EPFL


ncbi_country: China: Nantong; jiangsu province

ncbi_isolation_source: carcass

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Peptostreptococcales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Taiwan: Hospital

ncbi_isolation_source: plasma

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Chung Cheng University


ncbi_country: USA: California

ncbi_organism_name: Streptomyces sp. SLBN-115

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Cupriavidus basilensis OR16

ncbi_submitter: BAYGEN


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: salt crust

ncbi_organism_name: Bacteroidetes bacterium QS_3_64_15

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium QS_3_64_15


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Vancouver

ncbi_isolation_source: right submandibular abscess

ncbi_organism_name: Eikenella sp. NML03-A-027

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_organism_name: Rhodothermus marinus DSM 4252

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;c__Rhodothermia;o__Rhodothermales;f__Rhodothermaceae;g__Rhodothermus;s__Rhodothermus marinus;x__Rhodothermus marinus DSM 4252


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: isolated from patient

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_organism_name: uncultured Pseudomonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom: Great Britain

ncbi_organism_name: Clostridium novyi A str. 4540

ncbi_submitter: National Veterinary Institute (SVA)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium novyi;x__Clostridium novyi A;x__Clostridium novyi A str. 4540


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Biomin Research Center


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Frigoriglobus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthobacter sp. V2C-8

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Uppsala University


ncbi_organism_name: Paenibacillus sp. KR2-11

ncbi_submitter: Kyonggi university


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_submitter: University of Thessaly


ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Salmonella sp. CQ24WZ0532SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudoclavibacter sp. JSM 162008

ncbi_submitter: Jishou University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Department of Infectious diseases, Faculty of Medicine, University of Miyazaki


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Brazil: Pernambuco

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: mecC 165 PE

ncbi_submitter: LAPOA-Federal University of Paraiba (UFPB)


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: University of Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_100 WWTPs influent

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_country: Malaysia

ncbi_isolation_source: Blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Taiwan

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Chang-Geng Medical Foundation Linkou Chang-Geng Memorial Hospital


ncbi_country: Japan

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Choleraesuis


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Insytitute of microbiology and epidemiology


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_submitter: SC


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lentihominibacter sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Paludibacter jiangxiensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Waltera sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Makerere University


ncbi_country: Lebanon

ncbi_submitter: LAU


ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus acidophilus;x__Lactobacillus acidophilus DSM 20079 = JCM 1132 = NBRC 13951 = CIP 76.13


ncbi_submitter: DS-I Africa


ncbi_country: Costa Rica

ncbi_isolation_source: Fish tissue

ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: University of Georgia


ncbi_country: Canada: Metcalfe Bay; British Columbia

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral mucus

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Jilin

ncbi_organism_name: Snodgrassella sp. M0110

ncbi_submitter: China Agricultural University


ncbi_organism_name: Asticcacaulis sp.


ncbi_organism_name: Sphingomicrobium sp.


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida 2000

ncbi_submitter: Moredun Research Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Caldimonas sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: University of Miami

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Buchnera;s__Buchnera aphidicola;x__Buchnera aphidicola (Myzus persicae);x__Buchnera aphidicola str. G002 (Myzus persicae)


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University College Cork


ncbi_country: China: Beijing

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Peking university people's hospital


ncbi_submitter: Faculty of Public Health


ncbi_organism_name: Shewanella japonica

ncbi_submitter: marine college, shandong university


ncbi_country: Canada: Waterloo; Ontario

ncbi_isolate: BF1 Bin 82

ncbi_isolation_source: biofilm clogging methane capture system of an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_strain_identifiers: BF1 Bin 82

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Universiteit Antwerpen


ncbi_submitter: Zhejiang university


ncbi_country: India: West Bengal

ncbi_isolation_source: root

ncbi_organism_name: Bradyrhizobium sp. WBOS08

ncbi_submitter: University of Calcutta


ncbi_country: USA: Memphis

ncbi_isolation_source: oral

ncbi_organism_name: Streptococcus sp. O1

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: United Kingdom: London

ncbi_isolation_source: Plaque (carries -)

ncbi_organism_name: Actinomyces naeslundii

ncbi_submitter: King's College London


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella sp. S009_62208

ncbi_submitter: Zhejiang University


ncbi_country: China: Huizhou

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_isolation_source: sputum

ncbi_organism_name: Neisseria sp. HMSC064D07

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_country: New Zealand: Christchurch

ncbi_submitter: University of Canterbury


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: SC


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_country: Spain: Hellin; Albacete

ncbi_isolation_source: whole insect macerate from a Lab maintained population of field collected O. laevigatus

ncbi_organism_name: Leucobacter sp. OLCS4

ncbi_submitter: Swansea University


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolate: HCA2 bin11

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: HCA2 bin11

ncbi_submitter: China Agricultural University


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: BAL

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Connecticut

ncbi_isolation_source: normally sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella sp. CN_Kp100

ncbi_submitter: Max Rubner-Institut


ncbi_submitter: EMG


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Poultry

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: Mississippi

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: The University of Texas at Dallas


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: freshwater MAG --- Ja1-D4_bin-926

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: USA: Morgantown

ncbi_isolation_source: leech mucosal secretions

ncbi_organism_name: Pedobacter sp. Hv1

ncbi_submitter: West Virginia University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Jilin University


ncbi_organism_name: uncultured Maribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Academia Sinica


ncbi_submitter: Universidad de Chile


ncbi_organism_name: Salmonella sp. s52026

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Noviherbaspirillum sp.


ncbi_organism_name: Lacibacter sp.

ncbi_submitter: Oregon State University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Izemoplasmataceae bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;x__unclassified Candidatus Izemoplasmataceae;s__Candidatus Izemoplasmataceae bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: national health research institutes


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: CA

ncbi_isolation_source: fire pearl white nectarine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterocloster bolteae


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: USA:California Alameda

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_organism_name: Treponema sp.

ncbi_submitter: McGill University


ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis BCG


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: South Korea: Ilsan

ncbi_isolation_source: Rice field

ncbi_organism_name: Pontibacter oryzae

ncbi_strain_identifiers: KIRAN

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_organism_name: Gordonia aichiensis NBRC 108223

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Guangxi University


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Alistipes equi

ncbi_submitter: Quadram Institute


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_submitter: Northeast Forestry University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: Segatella copri

ncbi_submitter: BGI


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Treponema denticola

ncbi_strain_identifiers: strain e'

ncbi_submitter: The University of Hong Kong


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: China: Jiangxi; Yongping

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_organism_name: Escherichia coli

ncbi_submitter: insitut pasteur


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Moscow

ncbi_isolation_source: aspirate

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: SRCAMB


ncbi_country: China: Shanghai

ncbi_submitter: China Agricultural University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Wenzhou medical university


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_organism_name: Candidatus Niameybacter stercoravium

ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Sutterellaceae bacterium


ncbi_country: Croatia: Pula

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_organism_name: Opitutaceae bacterium


ncbi_country: Brazil: Capao do Leao

ncbi_isolation_source: soil sample

ncbi_organism_name: Curtobacterium sp. csp3

ncbi_submitter: UFPEL


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNIMI


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: USA: College Station; TX

ncbi_isolation_source: salivary gland

ncbi_organism_name: Proteus mirabilis

ncbi_strain_identifiers: Wood

ncbi_submitter: Texas A&M University


ncbi_country: Puerto Rico: ARECIBO

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Colombia: Barranquilla

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Alteromonas sp. 4B03

ncbi_submitter: ETH Zurich


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2144

ncbi_submitter: Broad Institute


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: PA 17

ncbi_isolation_source: cystic fibrosis lung infection

ncbi_organism_name: Pseudomonas aeruginosa str. PA 17

ncbi_strain_identifiers: PA 17

ncbi_submitter: University of Strathclyde

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas aeruginosa group;s__Pseudomonas aeruginosa;x__Pseudomonas aeruginosa str. PA 17


ncbi_country: China

ncbi_isolation_source: Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Acinetobacter baumannii 44362_4

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Germany

ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Proteus vulgaris

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: EMG


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Germany: Kiel

ncbi_isolation_source: Supermarket

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Atopobium deltae


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Streptococcus agalactiae GB00226

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Swansea University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Turicibacter sp. HGF1

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: Aphanamixis polystachya leaf

ncbi_organism_name: Bacillus sp. ME5

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ME5


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Yoonia sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Kasetsart University Chalermphrakiat Sakon Nakhon Province Campus


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Collinsella bouchesdurhonensis


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rickettsia rickettsii

ncbi_strain_identifiers: Cache Creek

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Alistipes ihumii


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aeromonas dhakensis


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Streptococcus suis subsp. hashimotonensis

ncbi_strain_identifiers: PAGU 2482

ncbi_submitter: National Center for Biotechnology Information


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacillales bacterium


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG12341

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_country: Russia: Saratov

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: RARI


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_country: Poland: Warszawa

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 18

ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Dictyoglomus thermophilum H-6-12

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: EBI


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: The University of Melbourne


ncbi_submitter: China Agricultural University


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_country: Singapore

ncbi_isolation_source: rectal

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3795

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Georgia Institute of Technology


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Spain

ncbi_isolation_source: water

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chr-Hansen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Pseudomonas sp.


ncbi_country: China: Nanning

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: EPFL


ncbi_country: Italy: Florence

ncbi_isolation_source: various material

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: HEPA air filter

ncbi_organism_name: Mesobacillus maritimus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: Wastewater effluent sample

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: blood from hospitalized preterm neonate

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Hunan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12536

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Texas

ncbi_isolation_source: environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Carlsbad Caverns; New Mexico

ncbi_organism_name: Streptomyces sp. AC550_RSS872

ncbi_submitter: University of New Mexico


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Bartonella henselae

ncbi_submitter: Ghent University


ncbi_organism_name: Nonomuraea sp. NPDC048892

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Qinghai

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Duganella sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_organism_name: Amycolatopsis sp. NPDC000746


ncbi_country: China: Shandong

ncbi_submitter: Provincial Hospital Affiliated to Shandong First Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Verrucomicrobia bacterium UBA2970

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA2970


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Mageeibacillus sp. UBA1243


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_organism_name: Phytobacter diazotrophicus

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Rubrobacteraceae bacterium


ncbi_country: Hungary

ncbi_isolation_source: soil

ncbi_organism_name: Photorhabdus sp. HUG-39

ncbi_submitter: University of Bern


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Distal colon


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 19

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: University of Wyoming


ncbi_country: China: Fujian

ncbi_isolation_source: activated sludge samples

ncbi_organism_name: Flavobacterium quisquiliarum


ncbi_assembly_name: Rumen uncultured genome RUG11171

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Nanjing

ncbi_isolation_source: clinically healthy pig

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Halomonas sp. THAF12

ncbi_submitter: UC Davis


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Bangladesh

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CDC


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_submitter: the hong kong university of science and technology


ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: colon

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: WTSI


ncbi_organism_name: Cellulomonas cellasea

ncbi_strain_identifiers: NBRC 3753

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Japan: Niigata

ncbi_isolation_source: soil sample

ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Nagaoka University of Technology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Variovorax sp. GB4R4

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Yakult Central Institute


ncbi_organism_name: Rhodococcus gannanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: University of Amsterdam


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Maryland


ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: concordia university


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Beijing

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Peking University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Armatimonadia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Desulfovermiculus sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp11 AA58

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp11 AA58

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Paenibacillus sp.

ncbi_submitter: Cleveland Clinic


ncbi_assembly_name: freshwater MAG --- MJ120730A_bin-063

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS


ncbi_country: Australia: Adelaide Hills; SA

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R965;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Mexico: Queretaro

ncbi_isolation_source: larvae

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: UNIVERSIDAD AUTONOMA DE QUERETARO


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A47

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 321

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: SNUC 5608

ncbi_submitter: University of Calgary


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Gilliamella apis

ncbi_submitter: EMG


ncbi_country: USA: California

ncbi_isolation_source: feces

ncbi_organism_name: Turicibacter sp. TA25

ncbi_submitter: University of California, Los Angeles


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Boston; MA

ncbi_isolation_source: aspirate

ncbi_organism_name: Staphylococcus aureus M0372

ncbi_submitter: Broad Institute


ncbi_organism_name: Lactococcus garvieae


ncbi_country: Italy

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 2-011-08_S3_C3

ncbi_submitter: IGS


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: Muribaculum intestinale


ncbi_country: Sudan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Khartoum


ncbi_organism_name: Streptococcus agalactiae GB00190

ncbi_submitter: The J. Craig Venter Institute


ncbi_assembly_name: freshwater MAG --- Loc090519-8m_bin-1520

ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: Parvimonas micra


ncbi_country: China

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Comoros

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: India: Vellore

ncbi_organism_name: Shigella sp. FC3196

ncbi_submitter: Christian Medical College


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: India: Rongmen

ncbi_isolation_source: Retail chicken

ncbi_organism_name: Escherichia albertii

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Czech Academy of Science


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: Malaysia: Kuala Terengganu; Terengganu

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Western Australia


ncbi_country: Thailand: Trang

ncbi_isolation_source: Pus

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Chicago


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: tahitimassiliensis MT43

ncbi_submitter: URMITE


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_assembly_name: Rumen uncultured genome RUG13028

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Olsenella sp.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12212

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces


ncbi_isolation_source: turban shell

ncbi_organism_name: Microbacterium saccharophilum

ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 1500

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: China: Shenzhen

ncbi_organism_name: Coprococcus sp. AM14-16

ncbi_submitter: BGI


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: Geneseo; NY

ncbi_isolation_source: Integrated Science Center elevator button

ncbi_organism_name: Bacillus sp. Gen2

ncbi_submitter: SUNY Geneseo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Gen2


ncbi_country: Argentina

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: INBIOTEC


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: USA: Georgia;Atlanta

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_assembly_name: IMG-taxon 2695420922 annotated assembly

ncbi_organism_name: Flavobacterium granuli

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Germany

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Leibniz Institute DSMZ-German Collection of Microrganisms and Cell Cultures


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: pork

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_country: France

ncbi_isolation_source: mineral water

ncbi_organism_name: Pseudomonas mandelii

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: YS river water

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: Denmark: Esbjerg E

ncbi_isolation_source: activated sludge from EsbE_18-Q3-R3-47

ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: Aalborg University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptomyces scabiei

ncbi_strain_identifiers: LBUM 1477

ncbi_submitter: Universite de Moncton


ncbi_organism_name: Candidatus Rifleibacteriota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rifleibacteriota;x__unclassified Candidatus Rifleibacteriota;s__Candidatus Rifleibacteriota bacterium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: Laos

ncbi_isolation_source: River

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Bern


ncbi_country: Paraguay: Coronel Oviedo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: uncultured Shewanellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Stenotrophomonas sp. 2YAF26

ncbi_submitter: CCRP


ncbi_organism_name: Delftia acidovorans


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Walailak University


ncbi_isolation_source: Colon


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: China: Fujian

ncbi_isolation_source: 2223E medium

ncbi_organism_name: Psychrobacter sp. Ps1

ncbi_submitter: Xiamen University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0055

ncbi_submitter: Broad Institute


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Roseibium sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Bacillus sp. C1(2022)

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. C1(2022)


ncbi_isolation_source: Aquaculture sediment

ncbi_organism_name: Cereibacter azotoformans

ncbi_submitter: Shanghai Ocean University


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Rakuno Gakuen University; Mansoura University; Zewail City of Science and Technology


ncbi_country: India: Vellore

ncbi_isolation_source: Fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_country: China

ncbi_isolation_source: gold-copper mine soil

ncbi_organism_name: Rhodanobacter denitrificans

ncbi_submitter: Fujian agriculture and forestry university.


ncbi_organism_name: Ichthyenterobacterium magnum

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-0210

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SBM Research Institute of Rospotrebnadzor


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces cyaneofuscatus


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Washington University in Saint Louis


ncbi_isolate: AOP1_H1_surf _bin _12

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP1_H1_surf _bin _12

ncbi_submitter: Genoscope


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: EMG


ncbi_organism_name: Altererythrobacter sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Bradyrhizobium sp. 10926

ncbi_submitter: Embrapa


ncbi_organism_name: Streptomyces sp. NPDC058572


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_assembly_name: freshwater MAG --- Ja1-D2_bin-0650

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: MOX H

ncbi_isolation_source: methanogen symbiont from mussel gill epithellium

ncbi_strain_identifiers: MOX H

ncbi_submitter: CRC 1182 Origin and Function of Metaorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__Bathymodiolus brooksi methanotrophic gill symbiont


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Chloroflexota bacterium


ncbi_organism_name: Citricoccus nitrophenolicus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Ensifer sp. R-19

ncbi_submitter: Iowa State University


ncbi_country: Italy

ncbi_isolation_source: deli meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Norway: Viken

ncbi_isolation_source: Silage

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: USA:California Monterey

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: Ghana: Accra

ncbi_isolation_source: mid-stream urine sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolate: VTEC

ncbi_isolation_source: faeces

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Washington

ncbi_isolation_source: Soil

ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: SC


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacillales bacterium


ncbi_submitter: Justus Liebig University Giessen


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: South China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_assembly_name: freshwater MAG --- KTt_bin-1485

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS


ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Rubellimicrobium sp.

ncbi_submitter: SciBear LLC


ncbi_country: China: Qinghai Province

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Corynebacterium sp. 321

ncbi_submitter: China CDC


ncbi_country: Germany

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Germany: Freising

ncbi_isolation_source: Buckwheat moromi fermentation

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonadaceae bacterium UBA7313

ncbi_submitter: University of Queensland


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_country: Russia: Republic of Kalmykia; Iki-Burulsky district

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_country: Sweden

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: Intrauterine purulent content

ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal University of Rio Grande do Sul (UFRGS)


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil

ncbi_isolation_source: cloacal content

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFOXYD2_FULL_35_12


ncbi_country: Atlantic Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Brevibacterium oceani

ncbi_submitter: Third Institute Of Oceanography,MNR


ncbi_country: Japan

ncbi_organism_name: Pseudomonas syringae pv. theae

ncbi_strain_identifiers: ICMP 3934

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. theae


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Serratia fonticola

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Seawater

ncbi_organism_name: Cobetia amphilecti

ncbi_submitter: marine college, shandong university


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: marine water anammox upflow column reactor biofilm on non-woven sheet

ncbi_organism_name: Candidatus Scalindua sp. AMX11

ncbi_submitter: KAUST

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;x__unclassified Candidatus Scalindua;s__Candidatus Scalindua sp. AMX11


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV115

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Sichuan

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: from type material

ncbi_organism_name: Nosocomiicoccus ampullae

ncbi_submitter: Robert Koch Institute


ncbi_country: Papua New Guinea

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-103

ncbi_submitter: Broad Institute


ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Caen

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus hirae


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolate: metabat2_coassembly_bwa.765 MAG

ncbi_organism_name: Jeotgalicoccus aerolatus

ncbi_strain_identifiers: metabat2_coassembly_bwa.765 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: Cloacal swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_country: India: Madhya Pradesh; Sehore; Mographool

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Congzhengia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: EMG


ncbi_country: China: Shanxi

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_country: Thailand

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Bacillus albus

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Sutterellaceae bacterium


ncbi_isolation_source: dinoflagellate Prorocentrum lima

ncbi_organism_name: Marinovum algicola

ncbi_strain_identifiers: CECT 5396

ncbi_submitter: UVEG


ncbi_assembly_name: IMG-taxon 2593339213 annotated assembly

ncbi_organism_name: Peptostreptococcaceae bacterium pGA-8

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Flavobacterium sp.


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudolysinimonas sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Qipengyuania sp. DGS2-2

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Celeribacter halophilus

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Prochlorococcus sp. MIT 1323

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces venezuelae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Kitasatospora cineracea


ncbi_assembly_name: Rumen uncultured genome RUG11281

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Chicha; maize-based fermented beverage

ncbi_organism_name: Leuconostoc suionicum

ncbi_strain_identifiers: CECT 8486

ncbi_submitter: UVEG


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Moraxella sp.


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_assembly_name: BEF

ncbi_country: Australia: Townsville; Queensland

ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: BEF

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Bangladesh

ncbi_isolation_source: Mastitis milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Bangladesh Agricultural University


ncbi_country: Canada: Alberta

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_assembly_name: freshwater MAG --- Erken-D1_bin-2002

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Microbispora sp. NBC_01189

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: candidate division WOR-3 bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Norway: Viken

ncbi_isolation_source: Silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Switzerland

ncbi_isolation_source: Ear swab

ncbi_organism_name: Macrococcoides canis

ncbi_submitter: University of Bern


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California