ncbi_country: Kenya

ncbi_organism_name: Bacillales bacterium UBA6338

ncbi_submitter: University of Queensland


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Sandaracinus sp.


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_assembly_level: Complete Genome

ncbi_assembly_name: NsDNF

ncbi_isolation_source: activated sludge sample of wastewater treatment plant in Hamburg

ncbi_organism_name: Nitrospira tepida

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: DNF

ncbi_submitter: RADBOUD UNIVERSITY, Department Microbiology

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_country: China: Chifeng

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: China: Shandong

ncbi_organism_name: Escherichia coli

ncbi_submitter: Provincial Hospital Affiliated to Shandong First Medical University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Bryobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: DHS Bioreactor

ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: Water Quality Control Lab, Division of Environmental Engineering, Faculty of Engineering, Hokkaido University


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: Clemson University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cold seep

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: park

ncbi_isolation_source: soil

ncbi_organism_name: Nocardioides silvaticus

ncbi_strain_identifiers: CCTCC AB 2018079

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Marinobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: feces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Coprococcus sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Actinomyces sp.


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Mageeibacillus sp. UBA3781

ncbi_submitter: University of Queensland


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium rhinophilum

ncbi_submitter: Duke University


ncbi_organism_name: Mycoplasma sp. CR

ncbi_strain_identifiers: CR

ncbi_submitter: Institute of Microbiology


ncbi_country: Belgium

ncbi_isolation_source: MiSeq assembly MagCore S15BD05371 (as-2)

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sciensano


ncbi_organism_name: Actinobacillus equuli subsp. haemolyticus

ncbi_submitter: Universiteit Gent


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_country: China: Jinhua

ncbi_isolation_source: fecal swab

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: New Caledonia

ncbi_organism_name: Leptospira meyeri

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Chandigarh

ncbi_isolation_source: Female Behind the ears

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: China: Jiaxing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Second Affiliated Hospital of Jiaxing University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: Angelakisella massiliensis

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_level: Chromosome

ncbi_country: Pakistan: Karak

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: National University of sciences and technology


ncbi_country: China

ncbi_submitter: Yangzhou university


ncbi_organism_name: Dorea sp. 5-2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Robertmurraya massiliosenegalensis


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Mexico: Yucatan

ncbi_organism_name: Escherichia coli

ncbi_submitter: CINVESTAV-IPN


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B387;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Bradyrhizobium sp. AZCC 2230

ncbi_strain_identifiers: AZCC 2230

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Brucella melitensis 64/150

ncbi_submitter: Broad Institute


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9024

ncbi_submitter: Chinese University of Hong Kong


ncbi_submitter: EMG


ncbi_isolation_source: ocean

ncbi_organism_name: Prochlorococcus marinus str. XMU1401

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG13921

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Brazil: Roraima

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: Malawi: Blantyre

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Atlantibacter hermannii


ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: DSMZ Isolate

ncbi_organism_name: Gordonia bronchialis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Paenibacillus alvei

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: faeces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_country: Italy

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus sp.


ncbi_organism_name: Candidatus Poriferihabitaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bosea thiooxidans

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Wayne State University


ncbi_organism_name: Salmonella enterica

ncbi_strain_identifiers: P03.2 FEA

ncbi_submitter: Faculdade de Ciencias Farmaceuticas de Ribeirao Preto


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: Chiang Mai University


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: National Autonomous University of Mexico


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Streptomyces caelestis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: University of Bordeaux


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces amritsarensis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Lachnospiraceae bacterium PF1-4

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: Limnochordales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_assembly_name: Rumen uncultured genome RUG158

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Orsay

ncbi_isolation_source: Rotting Apple

ncbi_organism_name: Comamonas piscis


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Colombia: Cordoba

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: tomato

ncbi_organism_name: Pseudomonas sp. IsoF

ncbi_strain_identifiers: IsoF

ncbi_submitter: University of Zurich


ncbi_organism_name: Candidatus Syntrophosphaera sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;x__unclassified Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera sp.


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EBI


ncbi_organism_name: Actinomadura citrea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: VA

ncbi_isolation_source: feces turkey (Meleagris sp.)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: The University Hong Kong


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Guadeloupe

ncbi_organism_name: Leptospira noguchii

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Fujian

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: USA

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Najit Technologies, Inc.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Thiomonas sp. CB3

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp. CB3


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Brazil

ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H72129_090612

ncbi_submitter: Broad Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Colombia: Bogota

ncbi_submitter: International Center for Microbial Genomics - Universidad El Bosque


ncbi_country: Lebanon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: lebanese american university


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Citrobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: SampleAA

ncbi_submitter: California Department of Public Health


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_country: South Korea: Busan

ncbi_isolation_source: aquarium water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_assembly_name: freshwater MAG --- MJ130820A_bin-350

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Iran: Persian Gulf; Khark

ncbi_isolation_source: marine surface water

ncbi_organism_name: Flexistipes sinusarabici

ncbi_submitter: University of Tehran


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Haloplasmataceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Xiamen

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University


ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Green Canyon; Gulf of Mexico

ncbi_isolation_source: ROV grab from gas hydrate in Gulf of Mexico

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: National Oceanic & Atmospheric Administration


ncbi_country: South Korea: Chungnam

ncbi_isolation_source: center of the feces

ncbi_organism_name: Hallella absiana

ncbi_submitter: ABS Research Support Center


ncbi_isolation_source: human gut

ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Mahidol University


ncbi_organism_name: Streptomyces lavendulocolor

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: USA: GA

ncbi_isolation_source: stream

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_country: Norway: Trndelag

ncbi_isolation_source: Blue mussel

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1561 from squamous cell carcinomas patient MST018

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_submitter: Federal University of Minas Gerais

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: University of Chicago


ncbi_country: China: Guangzhou

ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Jinan University


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: University of Colorado at Boulder


ncbi_organism_name: Segatella hominis


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Duncaniella sp.


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: United Kingdom:Aberdeen

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Gluconobacter thailandicus

ncbi_submitter: Gluconobacter oxydans WSH-003


ncbi_country: Russia: Republic of Khakassia; Shirinsky District

ncbi_isolation_source: Lake Shunet

ncbi_organism_name: Simkaniaceae bacterium

ncbi_submitter: Academia Sinica


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Universidad San Francisco de Quito


ncbi_organism_name: Granulosicoccaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus Tur-5

ncbi_submitter: Broad Institute


ncbi_country: Italy: Caserta

ncbi_isolation_source: lymph node

ncbi_organism_name: Brucella abortus

ncbi_submitter: IZSM-Portici


gtdb_type_species_of_genus: t

ncbi_country: South Korea: Yong-in

ncbi_isolation_source: tree

ncbi_organism_name: Hufsiella ginkgonis

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_isolation_source: blood


ncbi_organism_name: Planktomarina temperata

ncbi_submitter: The University of Melbourne


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Streptococcus lutetiensis


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 3034

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_submitter: Al-Nahrain University


ncbi_organism_name: Pseudomonas sp. M3

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Basfia succiniciproducens

ncbi_submitter: University of Bern


ncbi_country: Russia: Vologda region

ncbi_isolation_source: fen

ncbi_organism_name: Paludisphaera mucosa

ncbi_submitter: Research Center of Biotechnology of RAS


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Minnesota


ncbi_isolation_source: water

ncbi_organism_name: Bacteroidales bacterium UBA1458

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1458


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Pacearchaeota archaeon

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;x__Candidatus Pacearchaeota;x__unclassified Candidatus Pacearchaeota;s__Candidatus Pacearchaeota archaeon


ncbi_organism_name: Bacillus sp. H7(2023)

ncbi_submitter: Illinois Wesleyan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. H7(2023)


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_isolation_source: PMM port 1 of International Space Station

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: USA: Texas

ncbi_isolation_source: Dental plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Treponema pallidum

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Synechococcaceae;g__Synechococcus;s__Synechococcus elongatus;x__Synechococcus elongatus PCC 7942 = FACHB-805


ncbi_assembly_name: CECT 9532

ncbi_organism_name: Mesonia oceanica

ncbi_submitter: UVEG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnoclostridium sp. UBA7290


ncbi_organism_name: Streptomyces sp. NPDC048385

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with normal maize

ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Loc090402-8-9m_bin-0657

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Peru: Junin

ncbi_isolation_source: swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_strain_identifiers: ACVHE

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cepheid


ncbi_organism_name: uncultured Methylococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Accumulibacter jenkinsii

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter jenkinsii


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_country: China: Wenchang

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Pontibacter mangrovi

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Medical University of Gdansk


ncbi_country: India

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: Austria

ncbi_organism_name: Chlamydia suis

ncbi_strain_identifiers: S45 RIF

ncbi_submitter: University of Zurich


ncbi_organism_name: Abiotrophia defectiva

ncbi_submitter: EMG


ncbi_country: USA: Louisiana

ncbi_isolation_source: lungs

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Rikenellaceae bacterium


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-E03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Chuxiong City; Yunnan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yunnan agriculture university


ncbi_organism_name: Enterococcus faecalis


ncbi_country: South Korea: Jeollanam-do Geum river estuary

ncbi_isolation_source: soil

ncbi_organism_name: Schauerella aestuarii

ncbi_submitter: Kunsan National University


ncbi_isolation_source: gut

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: mangrove root bark

ncbi_organism_name: Homoserinibacter sp. GY 40078

ncbi_submitter: Guangxi University for Nationalities


ncbi_organism_name: Synechocystis sp.

ncbi_submitter: CSIR-Centre for Cellular and Molecular Biology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_country: Germany: Koln

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: France: Nancy

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: EMG


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Rectal swab

ncbi_submitter: Universidad Central del Ecuador


ncbi_organism_name: Shewanella sp. BJSY2023SW001

ncbi_submitter: Hangzhou CDC


ncbi_isolation_source: Cloacal swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Victivallales bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Chicago


ncbi_organism_name: Bifidobacterium mongoliense

ncbi_submitter: University of Parma


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Qingdao University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: Hospital Universitario Central de Asturias (Oviedo)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bacillus cereus group sp. MYBK234-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK234-2


ncbi_isolate: SPRUCE 606

ncbi_organism_name: Rectinemataceae bacterium

ncbi_strain_identifiers: SPRUCE 606

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Terriglobus sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Klebsiella sp. R390

ncbi_submitter: Monash University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University


ncbi_organism_name: Carbonactinospora thermoautotrophica

ncbi_strain_identifiers: StC

ncbi_submitter: KAUST, King Abdullah University of Science and Technology


ncbi_organism_name: Streptomyces sp. NPDC087218

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter guillouiae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of British Columbia


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Netherlands

ncbi_isolation_source: Secondary rapid sand filter

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Radboud University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Paenarthrobacter ureafaciens

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Collinsella phocaeensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Micromonospora sp. NBC_00617

ncbi_submitter: Technical University of Denmark


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_organism_name: Firmicutes bacterium HGW-Firmicutes-21

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium HGW-Firmicutes-21


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: South Korea: Sunchang

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: Chryseobacterium shandongense

ncbi_submitter: marine college, shandong university


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Candidatus Onthocola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Onthocola;x__unclassified Candidatus Onthocola;s__Candidatus Onthocola sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Nitrospiria bacterium

ncbi_submitter: Harvard University


ncbi_country: USA: MD

ncbi_organism_name: Butyricimonas virosa

ncbi_submitter: US Food and Drug Administration


ncbi_country: Czech Republic

ncbi_isolation_source: intestinal contents of pig

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Brazil

ncbi_isolation_source: pork carcass swab from slaughterhouse

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Vibrio atlanticus

ncbi_strain_identifiers: CECT 7223

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium felsineum

ncbi_submitter: University of Parma


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: the South China Sea

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Halopseudomonas nanhaiensis

ncbi_strain_identifiers: SCS 2-3

ncbi_submitter: BIOTECHNOLOGY RESEARCH INSTITUTE, CAAS


ncbi_submitter: University of Pretoria


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: South Africa: KwaZulu-Natal

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: China: Guangxi

ncbi_organism_name: Brevibacterium zhoupengii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: South Korea: Jeonnam Province

ncbi_isolation_source: Korean tranditional fermentation liquor

ncbi_organism_name: Pseudomonas sp. G5(2012)

ncbi_submitter: Gwangju Institution of Science and Technology


ncbi_organism_name: Klebsiella sp. GG_Kp177

ncbi_submitter: Max Rubner-Institut


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Weifang People's Hospital


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_strain_identifiers: NBRC 3830

ncbi_submitter: Bacteriology Microbiology, Osaka Institute of Public Health


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: BEI Resources


ncbi_organism_name: Amycolatopsis japonica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_isolation_source: sheep gut metagenome


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Klebsiella pneumoniae UHKPC17

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: spacecraft hardware

ncbi_organism_name: Bacillus sp. T33-2

ncbi_submitter: Jet Propulsion Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. T33-2


ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Sabulitectum sp.

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;g__Candidatus Sabulitectum;x__unclassified Candidatus Sabulitectum;s__Candidatus Sabulitectum sp.


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Region Zealand


ncbi_isolation_source: Screen swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Mozambique

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_country: Belgium

ncbi_isolation_source: Zoo Antwerpen

ncbi_submitter: Faculty of Veterinary Medicine, Ghent University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EBI


ncbi_country: Poland: Bialystok

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institiute


ncbi_country: Taiwan: Taipei City

ncbi_isolation_source: stool

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0304816.15

ncbi_submitter: IGS


ncbi_organism_name: Salipaludibacillus neizhouensis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Enterorhabdus sp.

ncbi_submitter: EMG


ncbi_assembly_name: MSH 10

ncbi_isolation_source: mouth of Mount St. Helen

ncbi_organism_name: Pseudomonas aeruginosa str. MSH 10

ncbi_strain_identifiers: MSH 10

ncbi_submitter: University of Strathclyde

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas aeruginosa group;s__Pseudomonas aeruginosa;x__Pseudomonas aeruginosa str. MSH 10


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: Israel: Karie Deshe

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Weizmann Institute


ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Achromobacter piechaudii NBRC 102461

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Hong Kong

ncbi_isolation_source: water

ncbi_organism_name: Brevundimonas sp. UBA5539

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Nostoc sp. UIC 10607

ncbi_submitter: University of Illinois at Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;s__Nostoc sp. UIC 10607


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Guatemala

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany: Freising

ncbi_isolation_source: MAP pork

ncbi_organism_name: Pseudolactococcus carnosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_isolate: AOP18_D1_surf _bin _17

ncbi_organism_name: Brachybacterium tyrofermentans

ncbi_strain_identifiers: AOP18_D1_surf _bin _17

ncbi_submitter: Genoscope


ncbi_organism_name: bacterium


ncbi_organism_name: Luteibacter sp. Lutesp34

ncbi_submitter: North Carolina State University


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bradyrhizobium sp. 8-10B

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_organism_name: Yoonia sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Granulicella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Nocardia arseniciresistens

ncbi_submitter: Kunming University


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: candidate division WWE3 bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces ehimensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG13887

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Ningxia

ncbi_submitter: Northwest A&F University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_country: China: Nanchang

ncbi_isolation_source: Poyang Lake

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_assembly_name: freshwater MAG --- Loc090116-1m_bin-1452

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Poland

ncbi_organism_name: Citrobacter sp. wls717

ncbi_submitter: NanKai universit


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: AL

ncbi_isolation_source: cloaca

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Escherichia coli CVM N36834PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N36834PS

ncbi_submitter: FDA


ncbi_country: China: Beijing

ncbi_isolation_source: patient

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Thailand: Phitsanulok

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cardiff University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_country: New Zealand: Leeston

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CMB72_RIF L4:1

ncbi_submitter: University of Canterbury


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Volar forearm swab

ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: University of Wisconsin - Madison


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Peru: Lima

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: AAFC


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Citrobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Korea: Jinju

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_organism_name: Desulfovibrio subterraneus

ncbi_submitter: Subsurface Microbiology Research Group, Horonobe Research Institute for the Subsurface Environment (H-RISE), Northern Advancement Centre for Science and Technology (NOASTEC)


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_isolation_source: automotive air conditioning system

ncbi_organism_name: Methylobacterium sp. DB0501

ncbi_submitter: Seoul National University


ncbi_country: Denmark: Aarhus Bay harbour

ncbi_isolation_source: 1 filament amplified by MDA; Aarhus Bay cable garden enrichment

ncbi_organism_name: Candidatus Electrothrix marina

ncbi_submitter: Aarhus University


ncbi_isolation_source: lake water

ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: skin

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: Cutibacterium acnes


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium binae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Exiguobacterium indicum

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium indicum


ncbi_assembly_name: BEG

ncbi_country: Australia: Queensland

ncbi_isolation_source: blood/urine

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: BEG

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alcanivorax sp.


ncbi_organism_name: Mixta calida


ncbi_assembly_name: Rumen uncultured genome RUG362

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Taiwan: Kaohsiung

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Marivita sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Escherichia coli O111:NM

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Boston College


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Affiliated Hospital of Southwest Medical University


ncbi_organism_name: Bacillus safensis subsp. safensis

ncbi_submitter: Kyonggi University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus safensis;sb__Bacillus safensis subsp. safensis


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Aestuariibaculum sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Bergeyella zoohelcum

ncbi_submitter: University of Minnesota


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Nocardiopsis alba

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_country: Portugal: Lisbon area

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1833R

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptococcus pneumoniae SP-BS293

ncbi_submitter: Center for Genomic Sciences, Allegheny-Singer Research Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Cloacibacillus evryensis

ncbi_submitter: EMG


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA3272

ncbi_submitter: University of Queensland


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site C

ncbi_isolation_source: Beach sand

ncbi_organism_name: Halobacteria archaeon

ncbi_submitter: Monash University


ncbi_country: Tanzania

ncbi_isolation_source: milk

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Lentisphaeria bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Icahn School of Medicine


ncbi_country: Thailand: north east region

ncbi_isolation_source: Thai traditional fermented fish

ncbi_organism_name: Salinicoccus sp. ID82-1

ncbi_submitter: Chulalongkorn university


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: sputum of adult cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Canada: QC

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_country: South Korea: Pocheon

ncbi_isolation_source: Laryngopharyngeal lymph node

ncbi_submitter: Animal and Plant Quarantine Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: Niger

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 70082

ncbi_submitter: IGS


ncbi_organism_name: uncultured Desulfuromonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: Sinimarinibacterium flocculans

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_isolation_source: skin infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium sp. NLR13a

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centre for Infectious Disease Research in Zambia


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Arthrobacter sp. Soc17.1.1.1

ncbi_submitter: Network for Extreme Environment Research


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil

ncbi_isolation_source: yolk of a one-day-old chicken with clinical signs of omphalitis

ncbi_organism_name: Escherichia coli O08

ncbi_submitter: UNICAMP


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Jiangxi provience

ncbi_isolation_source: intestinal content

ncbi_organism_name: Leucobacter sp. CX328

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: Brazil: Bahia

ncbi_isolation_source: Biofilm formed on glass slides submerged in a sewage for 72 hours

ncbi_organism_name: Leptospira levettii

ncbi_submitter: Federal University of Bahia


ncbi_country: China: HeNan

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Candidatus Ventrenecus avicola

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__;c__;o__;f__;g__Candidatus Ventrenecus;s__Candidatus Ventrenecus avicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Ventrenecus;s__Candidatus Ventrenecus avicola


ncbi_country: France: Nauviale

ncbi_isolation_source: leaf

ncbi_organism_name: Comamonadaceae bacterium OTU4NAUVB1

ncbi_submitter: INRAE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: New Zealand: Palmerston North

ncbi_isolation_source: fecal material from case of campylobacteroiosis

ncbi_submitter: Institute of Veterinary, Animal and Biomedical Sciences,  Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni H22082


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Bacillus sp. TWP2-2-2

ncbi_submitter: Institute of Tibetan Plateau Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. TWP2-2-2


ncbi_country: USA: Michigan

ncbi_isolation_source: sputum of drowning victim

ncbi_organism_name: Aeromonas veronii bv. veronii

ncbi_submitter: Masaryk University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: France: Limoges

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universite Paris Sud


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_isolation_source: liver equine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_strain_identifiers: OSS 814

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Pseudomonas syringae pv. tagetis

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 7;x__Pseudomonas syringae pv. tagetis


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Limosilactobacillus fermentum


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13760

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Streptomyces sp. rh155

ncbi_submitter: Cornell University


ncbi_organism_name: Microbacterium sp. A204

ncbi_submitter: China CDC


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: lake water

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: Australia: Perth

ncbi_isolation_source: Retail table eggs

ncbi_submitter: Murdoch University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Candidatus Aminicenantaceae bacterium

ncbi_submitter: Tsinghua University

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Aminicenantaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Aminicenantaceae;x__unclassified Candidatus Aminicenantaceae;s__Candidatus Aminicenantaceae bacterium


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: PTC fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: soil

ncbi_organism_name: Myxococcus xanthus

ncbi_submitter: Technical University Dortmund


ncbi_country: Thailand: Thung Chang

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2634166341 annotated assembly

ncbi_organism_name: Microterricola viridarii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Malan

ncbi_submitter: BGI-Qingdao


ncbi_country: China: Guangzhou

ncbi_isolation_source: anode biofilm of a sediment microbial fuel cell

ncbi_organism_name: Thauera humireducens

ncbi_submitter: Guangdong Institute of Eco-Environmental and Soil Science


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_assembly_name: QUAST

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Pukyong national university


ncbi_country: China: Ningxia

ncbi_isolation_source: pig fecal swab

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Montreal

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Legionella quinlivanii

ncbi_submitter: Laboratoire de sante publique du Quebec


ncbi_country: USA: Oregon

ncbi_organism_name: Rhizobium sp. E27B/91

ncbi_submitter: Oregon State University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: Nasal swabs

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Ruijin Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Tongji University


ncbi_country: Germany

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Swansea University


ncbi_country: Poland

ncbi_isolation_source: choana

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Akkermansia sp.


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Trichlorobacter lovleyi

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Dobichau

ncbi_isolation_source: Synovia

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Segatella copri

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_organism_name: Leuconostoc falkenbergense

ncbi_submitter: Teagasc


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: New Zealand: Te Puke

ncbi_isolation_source: kiwifruit orchard

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_strain_identifiers: Psa NZ-63

ncbi_submitter: New Zealand Institute for Plant and Food Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Candidatus Kuenenia sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__environmental samples;s__uncultured Candidatus Kuenenia sp.


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_submitter: Massey University


ncbi_country: Netherlands

ncbi_isolation_source: Tetrachloroethene-amended culture inoculated with sludge from a bioreactor treating chlorinated compound-contaminated water

ncbi_organism_name: Sulfurospirillum diekertiae

ncbi_submitter: Friedrich Schiller University Jena


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: China Agricultural University


ncbi_country: Japan

ncbi_organism_name: Bordetella pertussis

ncbi_strain_identifiers: Pelita III

ncbi_submitter: Virginia Tech


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: New Zealand: Manawatu

ncbi_organism_name: Campylobacter hyointestinalis subsp. hyointestinalis

ncbi_submitter: Molecular Epidemiology and Public Health Laboratory


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Loyola University Chicago


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: China: Tangshan

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis


ncbi_country: China: Zhengzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Christiangramia sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China: Xuzhou

ncbi_isolation_source: milking environment

ncbi_organism_name: Shewanella sp. JNE7


ncbi_country: Germany: Thuringia

ncbi_isolation_source: poultry feces

ncbi_organism_name: Aliarcobacter skirrowii

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Serratia inhibens

ncbi_submitter: Universidad de Santiago de Chile


ncbi_assembly_name: Rumen uncultured genome RUG12998

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA6223