ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Ruminococcus sp.


ncbi_assembly_level: Contig

ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Pseudomonas fildesensis

ncbi_submitter: Universidade Federal do Rio de Janeiro (UFRJ)


ncbi_organism_name: Elizabethkingia anophelis subsp. anophelis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Roxel

ncbi_isolation_source: compost

ncbi_organism_name: Arthrobacter sp. MYb222

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_country: South Korea: Yong-in

ncbi_isolation_source: tree

ncbi_organism_name: Deinococcus arboris

ncbi_refseq_category: reference genome

ncbi_submitter: Hankuk University of Foreign Studies

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Parvimonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Oricola sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: South Africa

ncbi_isolation_source: water

ncbi_submitter: University of Pretoria


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bilophila sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


gtdb_representative: t

ncbi_organism_name: Candidatus Faeciplasma avium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Faeciplasma;s__Candidatus Faeciplasma avium


ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_assembly_level: Complete Genome

ncbi_country: Switzerland

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Treponema vincentii

ncbi_strain_identifiers: OMZ 806

ncbi_submitter: The University of Hong Kong


ncbi_country: Turkey: Adana

ncbi_isolation_source: cloacal swab

ncbi_strain_identifiers: HMKU_VET6 mcr-1

ncbi_submitter: Hatay Mustafa Kemal University, Faculty of Veterinary Medicine


ncbi_assembly_name: IMG-taxon 2693429865 annotated assembly

ncbi_isolation_source: limestone

ncbi_organism_name: Geodermatophilus sabuli

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Jinan

ncbi_isolation_source: Bumble bee gut

ncbi_organism_name: Gilliamella sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Thessaly


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: USA: New York

ncbi_isolation_source: cystic fibrosis isolate

ncbi_submitter: AstraZeneca


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sphingomonas sp. SKA58

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Universidad El Bosque


ncbi_country: Canada

ncbi_submitter: University of Guelph


ncbi_organism_name: Proteus faecis

ncbi_submitter: FDA-CVM


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Geodermatophilaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing City

ncbi_isolation_source: nasopharyngeal swabs

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium


ncbi_country: China: Guangxi

ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology, Beijing


ncbi_country: Spain

ncbi_isolation_source: human milk from Spanish woman

ncbi_organism_name: Limosilactobacillus gastricus PS3

ncbi_submitter: Era7 Bioinformatics


ncbi_country: Chile: Biobio Region

ncbi_isolation_source: Activated sludge from wastewater plant

ncbi_organism_name: Stutzerimonas balearica

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: United Kingdom:England

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The REHAB Consortium


ncbi_country: China: Tibetans

ncbi_isolation_source: feces from diarrhoeal outpatients

ncbi_organism_name: Escherichia coli

ncbi_submitter: beijing


ncbi_organism_name: Microbacterium sp. WCS2018Hpa-23

ncbi_submitter: Utrecht University


ncbi_isolation_source: burned soil

ncbi_organism_name: Caballeronia sp.

ncbi_submitter: Colorado State University


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_country: USA:North Carolina

ncbi_isolation_source: Cecum

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: Viet Nam

ncbi_organism_name: Shigella sonnei


ncbi_country: China:Zhejiang Province

ncbi_isolation_source: sputum

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang University


ncbi_submitter: Inner Mongolia Minzu University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: IMG-taxon 2616644821 annotated assembly

ncbi_organism_name: Palleronia pelagia

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Hungatella hathewayi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: bovine farcy

ncbi_organism_name: Mycolicibacterium farcinogenes

ncbi_submitter: Uppsala University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_assembly_name: IMG-taxon 2617270931 annotated assembly

ncbi_organism_name: Devosia psychrophila


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus sp. E17BB

ncbi_submitter: China Agricultural University


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_assembly_name: freshwater SAG --- SB-2103-1078-H21

ncbi_isolation_source: freshwater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Parasphingorhabdus sp. DH2-15

ncbi_submitter: Chung-Ang university


ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Staphylococcus saprophyticus


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_4 depth 0-3 cm

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Chloroflexota bacterium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_isolation_source: Pharyngeal tonsil

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SC


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alcanivorax sp. UBA2685

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Sao Carlos

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Celeribacter arenosi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Colon

ncbi_organism_name: Lactobacillus taiwanensis


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Wisconsin-Madison, Utah State University, and Danisco USA Inc.


ncbi_organism_name: Jiangellales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Russia: Moscow

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Laboratory

ncbi_organism_name: Chlamydia muridarum

ncbi_submitter: University of Kansas


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China

ncbi_isolation_source: throat swab

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Ideonella sp.

ncbi_submitter: Aalborg University


ncbi_country: India

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Christian Medical College, Vellore


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: addis ababa university


ncbi_assembly_name: AiOr

ncbi_isolate: AiOr

ncbi_organism_name: Candidatus Frankia alpina

ncbi_strain_identifiers: AiOr


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Ibadan, Nigeria


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Isolate 13;Patient 13

ncbi_submitter: University of Pittsburgh


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bologna


ncbi_country: Australia: Brisbane

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-0481

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Vibrio rotiferianus

ncbi_submitter: marine college, shandong university


ncbi_country: China: Shanghai

ncbi_isolation_source: Environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: FDA/CDC


ncbi_submitter: IZLSLER


ncbi_organism_name: Rhodovulum visakhapatnamense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Methylopumilus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_country: Svalbard: Spitsbergen

ncbi_isolation_source: Arctic Soil

ncbi_organism_name: Hymenobacter polaris

ncbi_submitter: Kyonggi University


ncbi_isolate: VTEC

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_assembly_level: Chromosome

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alcanivorax sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Ogasawara Trench

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; deep-ocean trench

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium AC-647-P02_OGT_505m


ncbi_country: China: Guangdong

ncbi_isolation_source: lung

ncbi_submitter: China Agricultural University


gtdb_type_species_of_genus: t

ncbi_organism_name: Samsonia erythrinae


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: Sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0638

ncbi_submitter: Broad Institute


ncbi_isolation_source: urine

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: NM

ncbi_isolation_source: Turkey; Ground

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM N18486


ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2011EL-2105


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Microbacterium sp. MYb62

ncbi_submitter: Zoological Institute, Kiel University


ncbi_country: China: Anhui

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: lettuce

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Geminocystis sp. CENA526

ncbi_submitter: Center for Nuclear Energy in Agriculture (CENA) -University of Sao Paulo (USP)


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Venezuela

ncbi_organism_name: Staphylococcus aureus DAR5860


ncbi_organism_name: Escherichia coli

ncbi_submitter: Paris Saclay University


ncbi_country: China: Fujian

ncbi_isolation_source: feces

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Chester


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Unidad de Genomica y Bioinformatica


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Dialister hominis


ncbi_isolation_source: soil

ncbi_organism_name: Massilia phosphatilytica

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Rifleibacterium sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rifleibacteriota;x__Candidatus Rifleibacteriota incertae sedis;g__Candidatus Rifleibacterium;x__unclassified Candidatus Rifleibacterium;s__Candidatus Rifleibacterium sp.


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: EMG


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: France

ncbi_isolation_source: Finger scar

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Pakistan

ncbi_isolation_source: water

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: meat


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Shanghai

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_country: India

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_organism_name: Smithellaceae bacterium


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-0976

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__environmental samples;s__uncultured Candidatus Peregrinibacteria bacterium


ncbi_country: Australia: Newcastle

ncbi_organism_name: Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Bacillus sp. FSL L8-0167

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL L8-0167


ncbi_organism_name: uncultured Acholeplasma sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Holdemanella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_organism_name: Pseudomonas sp. 2024-245

ncbi_submitter: Instituto Nacional de Rehabilitacion


ncbi_organism_name: Neisseria sicca

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Congzhengia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SBM Research Institute of Rospotrebnadzor


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Blautia caecimuris

ncbi_submitter: Yale University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Sichuan University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_assembly_name: freshwater MAG --- VK3_bin-0480

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsCore2_bin-1845

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Clostridium baratii

ncbi_submitter: China Conservation and Research Center for the Giant Panda


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: University of Waterloo


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Nepal: Gokyo Ri

ncbi_isolation_source: alpine soil

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS


ncbi_country: Antarctica

ncbi_isolation_source: H2-incubated subglacial sediment

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: Institute of Oceanography, Shanghai Jiao Tong University, China


ncbi_assembly_name: Rumen uncultured genome RUG573

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Nostoc sp. CALU 1950

ncbi_submitter: Saint Petersburg State Universiry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;s__Nostoc sp. CALU 1950


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Croatia

ncbi_organism_name: Brucella ovis F8/05B

ncbi_submitter: Broad Institute


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: cornea

ncbi_organism_name: Moraxella sp. K2450

ncbi_submitter: Lycoming College


ncbi_submitter: Sichuan University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Selenomonas ruminantium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Cyanobacteria bacterium P01_A01_bin.84

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_A01_bin.84


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Enterococcus sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Slaughterhouse

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: university of burgos


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG11111

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Ares Genetics


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Florida

ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_strain_identifiers: Xv 72

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21267


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 169 - depth 10m

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_assembly_name: IMG-taxon 2619619004 annotated assembly

ncbi_organism_name: Sulfitobacter brevis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Lithuania

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: USA: Florida; Cedar Key

ncbi_isolation_source: gill

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex. Lucinisca nassula)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas cremoricolorata;x__Pseudomonas cremoricolorata DSM 17059 = NBRC 16634


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: soil immersed in hot spring water

ncbi_organism_name: Ectopseudomonas toyotomiensis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: USA: TN

ncbi_isolation_source: Sow

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N60123F

ncbi_submitter: FDA


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Kobe Institute of Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Acetobacter pomorum

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa

ncbi_isolation_source: water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pretoria


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: HKUST


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Cambridge


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Michigan State University


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Hungary: Bugyi

ncbi_isolation_source: enrichment culture AER2 inoculated with biofilm which develop in hydrocarbon contaminated groundwater; aerobic enrichment culture amended with 20 ppm diesel fuel/ crude oil mixture (3:2; v/v) as carbon and energy sources

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Szent Istvan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: river water

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Centre pasteur du Cameroun


ncbi_isolation_source: Blood


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Vibrio chaetopteri

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-2272

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S046_64203

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- MJ111018B_bin-0382

ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_organism_name: Ruegeria sp. HKCCD5849

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: EMG


ncbi_organism_name: Fusobacterium nucleatum


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: Russia: Stavropol

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Prevotella sp. UBA3846

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: secretions

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China:Suizhong County; Huludao City; Liaoning Province

ncbi_isolation_source: sediment

ncbi_organism_name: Sphingobacterium sp. SYP-B4668

ncbi_submitter: Shenyang Pharmaceutical University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tobacco research institute


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: USA

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: spacecraft surface

ncbi_organism_name: Robertmurraya korlensis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Methylobacter sp.

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: China: Jiangsu

ncbi_isolation_source: soil under the long-term application of triazophos

ncbi_organism_name: Teichococcus rhizosphaerae

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: vagina

ncbi_organism_name: Prevotella bivia DNF00188

ncbi_submitter: JCVI


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: S. Gallicano Institute, IRCCS


ncbi_organism_name: Alteromonas macleodii

ncbi_strain_identifiers: PAB 2.8

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Halanaerobiaceae bacterium


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Legionella longbeachae

ncbi_submitter: Eawag


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Candidatus Berkiella sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Berkiellales;f__Candidatus Berkiellaceae;g__Candidatus Berkiella;x__unclassified Candidatus Berkiella;s__Candidatus Berkiella sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Iran: Aran-Bidgol Salt Lake

ncbi_organism_name: Nesterenkonia sp. F

ncbi_strain_identifiers: F

ncbi_submitter: Iranian Biological Resource Center


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: central nervous system

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: Poland: Plonsk

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Enterobacter hormaechei


ncbi_isolation_source: mesocosm experiment

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Marvinbryantia sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Udea olivalis


ncbi_country: India

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Clostridium sp. CAG:217

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Proteus sp. G4412

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4412


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: Culture Collection

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus mycoides;x__Bacillus mycoides NBRC 101238 = DSM 11821

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Porticoccus sp.

ncbi_submitter: University of East Anglia


ncbi_submitter: Monash University


ncbi_organism_name: Kiloniellales bacterium

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_isolation_source: tracheal swab of layer chicken

ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Konkuk university


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus mitis


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Hungary: BTEX contaminated site in Siklos

ncbi_isolation_source: benzene-degrading enrichment culture

ncbi_organism_name: Ideonella benzenivorans

ncbi_submitter: Hunagrian University of Agriculture and Life Sciences


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae MGH 39

ncbi_strain_identifiers: MGH 39

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MGH 39


ncbi_country: South Africa: KwaZulu-Natal region

ncbi_organism_name: Mycobacterium tuberculosis KZN 4207

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis KZN 4207


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: BGI


ncbi_organism_name: Escherichia coli IS25

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Zymo Research Corporation


ncbi_country: Malaysia: Taiping Rubber Plantation; Perak

ncbi_isolation_source: root nodule

ncbi_organism_name: Burkholderia sp. USMB20

ncbi_submitter: USM


ncbi_country: USA: Stanford campus (California)

ncbi_isolation_source: NCBITaxon:7460 | Mouthparts of Gut of Apis mellifera

ncbi_organism_name: Acinetobacter baretiae

ncbi_submitter: Cornell University


ncbi_organism_name: Micromonospora sp. NPDC127501

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Colon

ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_country: Finland: University of Jyvaskyla

ncbi_isolation_source: experimental exposure to phage

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Treponema sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: SC


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Xiamen University


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-262

ncbi_submitter: Broad Institute


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Streptococcus pyogenes ABC020015294


ncbi_country: Germany

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Robert Koch Institute


ncbi_country: USA: NM

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with hylon

ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_isolation_source: human stool

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Anseong-si

ncbi_isolation_source: bark

ncbi_organism_name: Mucilaginibacter corticis

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_isolation_source: Seto Island Sea

ncbi_organism_name: Sulfitobacter sp. M36

ncbi_submitter: The Chinese University of Hong Kong


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: China:Yunnan province

ncbi_isolation_source: feces

ncbi_submitter: Yunnan Animal Science and Veterinary Institute


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Bern


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM1482

ncbi_submitter: IGS


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: wet soil

ncbi_organism_name: Sphingomonas alba

ncbi_submitter: Hankyong National University


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Enterobacter pasteurii

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_organism_name: uncultured Nannocystaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Salmonella sp. C3309

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonas syringae pv. aptata

ncbi_submitter: University of Belgrade, Faculty of Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aptata


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: INIA Rayentue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: UZ Gent


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Jytland

ncbi_isolation_source: Oral cavity

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Aarhus University


ncbi_organism_name: alpha proteobacterium Q-1

ncbi_submitter: Chiba University


ncbi_country: USA: Columbus; Ohio

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Negativicoccus succinicivorans


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Poland

ncbi_organism_name: Hafnia alvei

ncbi_submitter: nankai university


ncbi_country: Nigeria

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Iran

ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_isolate: gp1 AA130

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp1 AA130

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus infantis

ncbi_submitter: Cinvestav


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microcoleus sp. herbarium8

ncbi_submitter: Palacky University Olomouc


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-686-P16

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: France: Wissous

ncbi_isolation_source: urine

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Aquiluna sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Aquiluna;x__environmental samples;s__uncultured Aquiluna sp.


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Empedobacter sp. UBA1574

ncbi_submitter: University of Queensland


ncbi_country: China: Guangzhou

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: China:loess plateau

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Science


ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_country: South Africa: Mafikeng

ncbi_isolation_source: root

ncbi_organism_name: Enterobacter mori

ncbi_submitter: North-West University


ncbi_organism_name: Streptococcus pyogenes ABC020048184

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: eye

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA - AMRF 3

ncbi_submitter: Aravind Medical Research Foundation


ncbi_country: China: WuHan

ncbi_isolation_source: wholesale market

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Pakistan: Rawalpindi

ncbi_isolation_source: rhizospheric soil of plants growing naturally in the vicinity of discharge point of an industrial area

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: AIT Austrian Institute of Technology Austria


ncbi_isolation_source: feces

ncbi_organism_name: Fusobacterium hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_assembly_name: freshwater MAG --- Loclat_bin-05257

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Acidimicrobium sp. UBA3010


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Shigella flexneri K-227


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: Unknown

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactobacillus johnsonii


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus;s__Deinococcus radiodurans;x__Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539


ncbi_organism_name: Roseitalea porphyridii

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Lincang; Yunnan

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobacterium sp. lm-10

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_organism_name: Peribacillus sp. FSL E2-0159

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Peribacillus;x__unclassified Peribacillus;s__Peribacillus sp. FSL E2-0159


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC050264

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Thailand

ncbi_isolation_source: strain Burkholderia pseudomallei 134 catamine resistant isogenic selectant

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: EMG


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV039

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: New York; Buffalo

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: University at Buffalo


ncbi_country: USA: Florida; Tampa

ncbi_isolation_source: Patient stools

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of South Florida


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Iowa

ncbi_organism_name: Streptomyces torulosus

ncbi_strain_identifiers: NRRL B-3889

ncbi_submitter: USDA/ARS/NCAUR


ncbi_organism_name: Streptomyces sp. NPDC006514


ncbi_country: USA: Hawaii; Kaneohe Bay

ncbi_organism_name: Fluctibacter corallii

ncbi_submitter: Southern Oregon University


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Tibet; Nyingchi

ncbi_isolation_source: grass roots

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: Rainer Borriss's shared submissions


ncbi_organism_name: Pantoea sp. GABEPS69

ncbi_submitter: University of Galway


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: groundwater

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: chongqing

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: MDR-CQG

ncbi_submitter: Chongqing People's Hospital


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: NIH/NHGRI


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_submitter: University of Melbourne


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Marques de Valdecilla


ncbi_submitter: Vinoba Bhave University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: Ructibacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: McMaster University


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: Thiohalospira sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Germany: Kilianstollen; Marsberg

ncbi_isolation_source: biofilm

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Agathobaculum sp.


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Salmonella sp. NW1069

ncbi_submitter: Sichuan University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Fusobacterium animalis 21_1A

ncbi_submitter: Broad Institute


ncbi_organism_name: Sulfurovaceae bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Africa

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Brevibacterium sp. UMB1308A

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_assembly_name: Rumen uncultured genome RUG10922

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Proteus sp. (in: enterobacteria)

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. (in: enterobacteria)


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: China: Hang Zhou

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces albus


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Huzhou

ncbi_isolation_source: stool

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Stenotrophomonas sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: General University Hospital of Patras


ncbi_organism_name: Castellaniella sp. FW104-16D08

ncbi_submitter: ENIGMA


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Primary Effluent)

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0501

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar London


ncbi_country: USA: Ohio

ncbi_isolation_source: WOUND/ABSCESS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: South Korea

ncbi_submitter: Korea Zoonosis Research Institute


ncbi_submitter: University of Galway


ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: USA

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: NHGRI/NIH


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Seawater (1m depth)

ncbi_organism_name: Loktanella sp.

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Life Science


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Streptococcus australis ATCC 700641

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Hunan Province

ncbi_isolation_source: soil

ncbi_organism_name: Paracoccus sp. FO-3

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. FO-3


ncbi_assembly_name: Streptococcus tigurinus AZ_3a

ncbi_country: Switzerland

ncbi_isolation_source: blood culture

ncbi_submitter: Geneva University Hospitals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis;sb__Streptococcus oralis subsp. tigurinus;x__Streptococcus oralis subsp. tigurinus AZ_3a


ncbi_organism_name: uncultured Pseudoflavonifractor sp.

ncbi_submitter: EMG


ncbi_organism_name: Leptotrichia hongkongensis


ncbi_organism_name: Azospirillum sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptococcus sp. Marseille-P6264

ncbi_submitter: URMITE


ncbi_organism_name: Streptococcus agalactiae FSL S3-105

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Malaysia: Johor

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Hahella sp. CR1

ncbi_submitter: FACULTY OF SCIENCE, UNIVERSITI TEKNOLOGI MALAYSIA


ncbi_organism_name: Porphyromonas endodontalis


ncbi_country: Spain: Madrid

ncbi_isolation_source: Rectal colonization

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Germany

ncbi_isolation_source: meat

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion


ncbi_submitter: Xiangya hospital, Central South University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Abuja


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Streptomyces sp. NPDC101150

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_organism_name: Tardiphaga sp. 619_E2_N8_6

ncbi_submitter: VIB


ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Capnocytophaga cynodegmi

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Actinoplanes sp. NPDC051851


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: Achromobacter kerstersii

ncbi_submitter: University of Technology Sydney


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Hong Kong

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Mycolicibacterium neoaurum

ncbi_submitter: UNESP-FCAV


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Minnesota

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus sp. UMNPBX10

ncbi_submitter: University of Minnesota


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: VHProbi V22

ncbi_submitter: Nutrition &Health Technology Center


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium HUM_9


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: India: Unkeshwar

ncbi_isolation_source: sediment

ncbi_organism_name: Streptomyces sp. DASNCL29

ncbi_submitter: CSIR- National Chemical Laboratory


ncbi_organism_name: Bifidobacterium animalis


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Streptococcus agalactiae MRI Z1-217

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: Klebsiella pneumoniae

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_strain_identifiers: Klebsiella pneumoniae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Bacteroidales bacterium MB20-C3-3

ncbi_submitter: Sanming University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium MB20-C3-3


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: San Francisco

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: Pacific Ocean: New Britain Trench

ncbi_isolation_source: deep seawater

ncbi_organism_name: Parasedimentitalea marina

ncbi_submitter: Shanghai Ocean University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: Supragingival and interproximal dental plaque

ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: infant stool

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: EMG


ncbi_country: Poland: Elblag

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: Blood culture

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Erysipelothrix rhusiopathiae subsp. ohloneorum


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Egypt

ncbi_isolation_source: Raw milk cheese


ncbi_isolation_source: human gut

ncbi_organism_name: Enterocloster lavalensis


ncbi_country: Argentina: Tandil

ncbi_submitter: Universidad de Chile


ncbi_country: USA: OR

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Streptomyces sabulosicollis

ncbi_submitter: Indonesia Endowment Fund for Education (LPDP)


ncbi_country: China: Yangjiang

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: South China Agricultural University


ncbi_country: China: Tibet

ncbi_isolation_source: Tibet kefir

ncbi_organism_name: Lacticaseibacillus casei

ncbi_submitter: Beijing Technology and Business University


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD15584

ncbi_submitter: Broad Institute


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Helicobacter sp. UBA3407


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: alternating anaerobic and microareobic bioreactor

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Bern


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: Colombia

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_country: Sri Lanka: Kandy

ncbi_isolation_source: isolated from septicaemic giant gouramy

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Faculty of Veterinary Medicine and Animal Science, University of Peradeniya


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Maribacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: France

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lactobacillus acidophilus

ncbi_strain_identifiers: CIRM-BIA 902

ncbi_submitter: Brigham Young University


ncbi_country: USA: California

ncbi_isolation_source: stool sample

ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_submitter: KEMRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Sphingomonas humi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Mozambique

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Mesocricetibacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: IMG-taxon 2695420961 annotated assembly

ncbi_organism_name: Flavobacterium johnsoniae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_assembly_name: STM8789 genome assembly

ncbi_country: Senegal

ncbi_organism_name: Mesorhizobium sp. SOD10

ncbi_submitter: IRD


ncbi_country: Sweden: Bothnian Sea

ncbi_isolation_source: Bothnian Sea site NB8 sediments 37-42 cm depth; used to inoculate methane- and iron-fed bioreactor (T0); bioreactor biomass 16 months after reactor inoculation (T1); and 29 months after reactor inoculation (T2)

ncbi_organism_name: Devosia sp.

ncbi_submitter: Radboud University Nijmegen


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: USA: Houston; TX

ncbi_isolation_source: vagina

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Seattle University


ncbi_country: Portugal: National Park of Peneda-Geres; Ermida

ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Universidade do Minho


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Segatella copri

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolate: Clostridium neonatale JD106

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale JD106

ncbi_submitter: universite paris cite