ncbi_country: China: changzhi

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium changzhiense

ncbi_strain_identifiers: WYCCWR 11290

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: t

ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: Salmonella enterica CVM N45957 v1.0

ncbi_country: USA: TN

ncbi_isolation_source: Chicken Wings

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimonas balearica

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_country: Canada: Ontario

ncbi_isolation_source: kidney of fish with systemic disease

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: Water

ncbi_organism_name: Escherichia coli

ncbi_submitter: MASSEY UNIVERSITY


ncbi_country: Australia

ncbi_isolation_source: Troups Creek Wetland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_level: Scaffold

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__environmental samples;s__uncultured candidatus Brocadiaceae bacterium


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Laboratory of Veterinary Bacteriology UFRGS


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Quanzhou Normal University


ncbi_assembly_level: Chromosome

ncbi_assembly_name: Kle_pne IVRI_FBI_625

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: UIUC


ncbi_organism_name: Roseburia inulinivorans


ncbi_organism_name: Lysinibacillus sp. RSDA_15

ncbi_submitter: Hannam University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Yantai University


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus

ncbi_submitter: North South University


ncbi_country: Venezuela: Caracas

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Haemophilus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Scalinduaceae bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;x__unclassified Candidatus Scalinduaceae;s__Candidatus Scalinduaceae bacterium


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: China: Sichuan

ncbi_isolation_source: patient with infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: University of Haifa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Japan: Nagasaki

ncbi_organism_name: Streptococcus sp. NPS 308

ncbi_strain_identifiers: NPS 308

ncbi_submitter: Department of Pediatric Dentistry, Nagasaki University Graduate School of Biomedical Sciences


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Nocardia violaceofusca NBRC 14427

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Canada: British Columbia

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: China: Xinjiang

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas cerealis pv. cerealis

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas cerealis;x__Xanthomonas cerealis pv. cerealis


ncbi_country: Colombia: Magdalena

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Padova


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: Japan

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Toho university


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: Biotechnical faculty Ljubljana


ncbi_assembly_name: IMG-taxon 2602042028 annotated assembly

ncbi_organism_name: Stutzerimonas balearica DSM 6083

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;x__Stutzerimonas stutzeri group;s__Stutzerimonas balearica;x__Stutzerimonas balearica DSM 6083

ncbi_type_material_designation: assembly from type material


ncbi_country: Algeria

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


gtdb_type_species_of_genus: t

ncbi_organism_name: Mycoplasmoides pneumoniae FH

ncbi_strain_identifiers: FH

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_country: USA

ncbi_isolation_source: sputum samples from patient with COPD

ncbi_organism_name: Bacillus obstructivus

ncbi_submitter: Human Microbiology Institute


ncbi_organism_name: Sphingobium indicum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_country: USA: Ohio

ncbi_isolation_source: WOUND/ABSCESS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rissen


ncbi_isolation_source: human gut

ncbi_organism_name: Mediterraneibacter sp.

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Psychrobacter alimentarius

ncbi_submitter: Genetics & Cytology Department, Biotechnology, National Research Center


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Netherlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Argentina: Buenos Aires

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMPaM(UBA/CONICET)-Facultad de Medicina UBA


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Queensland


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Menzies School of Health Research


ncbi_country: USA: TX

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: poultry farm

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Shandong First Medical University


ncbi_country: Finland: Olkiluoto Island

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulforudis sp.

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Candidatus Desulforudaceae;g__Candidatus Desulforudis;x__unclassified Candidatus Desulforudis;s__Desulforudis sp.


ncbi_organism_name: Klebsiella pneumoniae 120_1020

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: Pontibacterium sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Rhodococcus triatomae NBRC 103116

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Pakistan: Rawalpindi; Fauji Foundation Hospital

ncbi_organism_name: Escherichia coli

ncbi_submitter: National University of Sciences and Technology


ncbi_country: USA: MD

ncbi_isolation_source: Paprika

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: wood

ncbi_organism_name: Propionibacteriaceae bacterium UBA4569

ncbi_submitter: University of Queensland


ncbi_organism_name: Lysinibacillus varians

ncbi_refseq_category: reference genome

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: South Korea: Pocheon Province

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus ginsengarvi

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baylyi


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_isolate: MTUNDRAET4 annotated genome

ncbi_organism_name: Methylocella tundrae

ncbi_strain_identifiers: MTUNDRAET4 annotated genome

ncbi_submitter: RADBOUD UNIVERSITY


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dialister invisus


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_submitter: University of Waterloo


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_country: China: Zhejiang;Linghu

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Zhejiang Institute of Freshwater Fisheries


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas sp. P1.8

ncbi_submitter: JLU


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: India: Thiruvandarkoil lake; Puducherry

ncbi_isolation_source: Eutrophic lake

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Pondicherry university


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomultivorans

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: Bronch wash

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Wenzhou

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Australia: Victoria

ncbi_isolation_source: clinical; PCR+ stool swab

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Western Australia


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: sputum

ncbi_submitter: Jinan University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Prevotella conceptionensis


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: New Mexico; Albuquerque

ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_strain_identifiers: Albuquerque 1 (D-7474)

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Denmark

ncbi_isolation_source: zooplankton aquaculture

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Hangzhou

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College Dublin


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: India

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Pakistan

ncbi_isolation_source: industrial effluent

ncbi_organism_name: Bacillus sp. MB353a

ncbi_submitter: Fatima Jinnah Women University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. MB353a


ncbi_organism_name: Escherichia coli O157:H7 str. K2845

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K2845


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13612

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: slaughtered pig

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar London


ncbi_country: Peru:Ascope; Chicama; Chicama

ncbi_organism_name: Yersinia pestis PY-32

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Chryseobacterium sp. BIGb0186

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Bethesda; MD

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_isolation_source: swine

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: FDA-CVM


ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_assembly_name: Rumen uncultured genome RUG12754

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Germany

ncbi_isolation_source: starter culture

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Argentina

ncbi_isolation_source: pleural fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: Nasal swabs

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Ruijin Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Streptomyces sp. NPDC000971

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Virgibacillus pantothenticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with potato starch

ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Czech Academy of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Turkey: Sanliurfa; Siverek

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_strain_identifiers: NNAb 2479

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: passage 50 in MRS medium of strain P-8

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education


ncbi_organism_name: Lysobacter capsici

ncbi_submitter: G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, PSCBR RAS


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_strain_identifiers: ISU 879

ncbi_submitter: USDA-ARS


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Russia: Pushchino

ncbi_organism_name: Microbacterium sp. KKR3/1

ncbi_submitter: IBPM RAS


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Calgary


ncbi_country: Brazil: Mato Grosso

ncbi_isolation_source: Carcass swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal University of Mato Grosso


ncbi_isolation_source: mudslide

ncbi_organism_name: Pseudomonas azotoformans

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Salmonella sp. C3341

ncbi_submitter: Sichuan University


ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_organism_name: Leyella stercorea


ncbi_organism_name: Hungateiclostridiaceae bacterium KB18

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0073R

ncbi_submitter: Broad Institute


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Stanford University


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: China: Wutian village; Huangmei county; Hubei province

ncbi_isolation_source: rice paddy field

ncbi_organism_name: Richelia sinica FACHB-800

ncbi_strain_identifiers: FACHB 800

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: National Taiwan University


ncbi_organism_name: uncultured Synergistaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: uncultured Sphingopyxis sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: University of California, Davis


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Sanwa Shurui Co., Ltd.


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Micavibrio sp.


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: blood

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Chishuiella sp.


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17


ncbi_country: China: Jiangsu

ncbi_isolation_source: pig

ncbi_submitter: Yangzhou University


ncbi_country: South Korea: Jeju

ncbi_organism_name: Paracoccus spongiarum

ncbi_submitter: Hannam University


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 38

ncbi_submitter: Lebanese American University


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Smithella sp.

ncbi_submitter: University of Waterloo


ncbi_country: Nigeria

ncbi_submitter: Cepheid


ncbi_submitter: Monash University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Gemmatimonadota bacterium


ncbi_isolation_source: terrestrial

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of Queensland


ncbi_country: Canada: Calgary

ncbi_isolation_source: hospital room swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Calgary Laboratory Services


ncbi_country: USA: Quincy; Illinois

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Tech


ncbi_country: Germany: Zingster Strom

ncbi_isolation_source: Cyanobium sp. CZS 25K enrichment culture from brackish water

ncbi_organism_name: Cyanobium sp. CZS25K

ncbi_submitter: Mount Allison University


ncbi_isolation_source: fresh feces

ncbi_organism_name: Morganella morganii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Thermus thermophilus

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_country: Netherlands

ncbi_isolation_source: disinfectant-free drinking water; site 3

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Glasgow


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA1012


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus devriesei


ncbi_organism_name: Prevotella sp.


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;s__Candidatus Nealsonbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_40_24


ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: Xiamen University


ncbi_country: South Korea: Taean beach

ncbi_isolation_source: marine sediment

ncbi_organism_name: Oceanimonas marisflavi

ncbi_submitter: Korea University


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Biomin Research Center


ncbi_country: China: Hainan

ncbi_isolation_source: sewage

ncbi_organism_name: Acinetobacter sp. YH12136

ncbi_submitter: South China Agricultural University


ncbi_country: Russia: Eastern Siberia

ncbi_isolation_source: soda lake

ncbi_organism_name: Candidatus Viridilinea mediisalina

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Japan

ncbi_isolation_source: Deep-sea chimney collected from hydrothermal feild in Suiyo Seamount

ncbi_organism_name: Oceanithermus desulfurans NBRC 100063

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Hong Kong

ncbi_isolation_source: Stanley WWTPs_28 WWTPs effluent

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: Weifang People's Hospital


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: uncultured Tyzzerella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Slovenia: River Sava

ncbi_isolation_source: Sava Riverbank; Slovenia

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Ljubljana, Biotechnical faculty


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: France: Paris; St. Joseph Hospital

ncbi_isolation_source: patient suffering sinusitis

ncbi_submitter: University of Siena


ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_submitter: University of South Australia


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Rhodothermus sp.

ncbi_submitter: Portland State University


ncbi_country: China

ncbi_organism_name: Bradyrhizobium yuanmingense CCBAU 35157

ncbi_strain_identifiers: CCBAU 35157

ncbi_submitter: China Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Acutalibacter ornithocaccae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Veillonella rogosae JCM 15642

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_isolate: Prospectively collected (P)

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Prospectively collected (P)

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nagoya University


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Bordetella parapertussis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli


ncbi_country: India: Karnataka; Gulbarga; Kurgunta

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: freshwater MAG --- Erken-D11_bin-0522

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: Streptomyces griseoaurantiacus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: SAN Group Biotech Germany


ncbi_organism_name: Streptomyces sp. NPDC096176

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine, Chulalongkorn University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R779;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: GA

ncbi_isolation_source: Young Chickens

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N60425F

ncbi_submitter: FDA


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan: Hiroshima; Higashi-hiroshima; Kurose river

ncbi_isolation_source: water

ncbi_organism_name: Aurantimicrobium minutum

ncbi_strain_identifiers: KNC

ncbi_submitter: National Institute of Genetics


ncbi_organism_name: Staphylococcus auricularis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus sp. S105_ASV_20

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Proteus columbae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rhodococcus sp. 15-1154-1

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 15-1154-1


ncbi_organism_name: Brachyspira intermedia

ncbi_submitter: Animal and Plant Health Agency


ncbi_country: Bangladesh

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: South Africa

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Stellenbosch University


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Cloacal swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Acinetobacter haemolyticus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_isolation_source: Amyloid arthropaty

ncbi_organism_name: Enterococcus faecalis EnGen0059

ncbi_strain_identifiers: C 19315 led 1b pp (SCV)

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1397084

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Germany

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: unknown


ncbi_country: Mexico: Sonora

ncbi_isolation_source: Cerebrospinal fluid

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Instituto de Biotecnologia, UNAM


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)


ncbi_isolation_source: terrestrial

ncbi_organism_name: Thermodesulfobacterium commune

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Mycolicibacterium thermoresistibile

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Australia

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_organism_name: Bartonella henselae str. Houston-1

ncbi_submitter: Uppsala Univ.


ncbi_organism_name: Nitratidesulfovibrio sp. 1201_IL3209

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Soochow University


ncbi_isolation_source: Air filter

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Agrotis exclamationis


ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: China: Weifang

ncbi_isolation_source: sputum

ncbi_submitter: University College London (UCL)


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Limnoraphis robusta CCNP1315

ncbi_strain_identifiers: CCNP 1315

ncbi_submitter: Universidade de Sao Paulo, Sao Paulo, Brazil


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Queensland


ncbi_country: Greece: Epirus

ncbi_isolation_source: artisanal Greek feta cheese

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Klebsiella pneumoniae KCTC 2242

ncbi_strain_identifiers: KCTC 2242

ncbi_submitter: Macrogen Inc.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae KCTC 2242


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Octadecabacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Victivallis sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_submitter: City University of Hong Kong


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Quanzhou Bay

ncbi_isolation_source: Coastal sediment

ncbi_organism_name: Aestuariivivens sediminis

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Herbiconiux sp. YIM B11900

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: USDA-ARS


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Shewanella sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Paludibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_organism_name: Pseudomonas brassicacearum subsp. neoaurantiaca

ncbi_submitter: Institut de Recherche LABIRIS


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Scatavimonas sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Scatavimonas;x__unclassified Candidatus Scatavimonas;s__Candidatus Scatavimonas sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: USA: MD

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: dairy

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: FRR B 2941

ncbi_submitter: Queensland Health


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_isolation_source: Deep sediment

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia sp. BCC1644

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Kiritimatiellota bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Kiritimatiellota;x__environmental samples;s__uncultured Kiritimatiellota bacterium


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Tennessee

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: iowa state university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China:Hubei; Wuhan

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: USA:Las Vegas

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Paenarthrobacter nicotinovorans

ncbi_submitter: Universidad Autonoma de Chile


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: Bangladesh

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_country: USA:San Diego


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Limnobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Alistipes inops

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter sp. BCW_6464

ncbi_submitter: University of California at Davis


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium RIFCSPHIGHO2_02_FULL_47_14


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


ncbi_country: Antarctica

ncbi_isolation_source: sea water

ncbi_organism_name: Rhizobiales bacterium IMCC20636

ncbi_submitter: Inha University


ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia: Segamat

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Monash University Malaysia


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3329-1

ncbi_submitter: Broad Institute


ncbi_strain_identifiers: Escherichia coli EC16256

ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_country: Russia: Moscow

ncbi_submitter: SRCAMB


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: Canada: Southern Ontario

ncbi_isolation_source: soil

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of Calgary


ncbi_country: Costa Rica

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- C24_bin-2304

ncbi_isolation_source: pond

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Cleaned poultry house

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Berlin

ncbi_isolation_source: beetle abdomen

ncbi_organism_name: Candidatus Bostrichicola ureolyticus

ncbi_submitter: Johannes Gutenberg-University Mainz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;x__Flavobacteriia incertae sedis;g__Candidatus Bostrichicola;s__Candidatus Bostrichicola ureolyticus


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Canada: Guelph

ncbi_isolation_source: dumpster

ncbi_submitter: University of Guelph


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Nocardiopsis sp.

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Alloprevotella sp.


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Netherlands

ncbi_organism_name: Borreliella bavariensis

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Houston Methodist Research Institute


ncbi_country: South Korea: Seoul

ncbi_isolation_source: carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chungbuk National University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Forsyth Institute


ncbi_country: France: Normandy

ncbi_isolation_source: genital

ncbi_submitter: LABEO


ncbi_assembly_name: freshwater MAG --- Loc090907-1m_bin-580

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Germany: Landstuhl; Landstuhl Regional Medical Center

ncbi_organism_name: Acinetobacter baumannii OIFC110

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: USA

ncbi_isolation_source: cystic fibrosis sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: SC


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermodesulfovibrio sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: EMG


ncbi_country: Denmark: Jaegerspris slot; under dead tree

ncbi_isolation_source: soil

ncbi_organism_name: Micromonospora peucetia

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_country: Tanzania

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Bergen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centers for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. FDA-CDC-AR_0164


ncbi_country: France

ncbi_isolation_source: lettuce field

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: University Claude Bernard Lyon 1


ncbi_organism_name: Arcobacteraceae bacterium


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Mesorhizobium sp. STM 4661

ncbi_submitter: Genoscope CEA


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Bos taurus

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Haemophilus influenzae


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: [Pasteurella] aerogenes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;x__Pasteurellaceae incertae sedis;x__[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex;s__[Pasteurella] aerogenes


ncbi_organism_name: Terracidiphilus sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Baoding

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: CAU


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium Isolate-084 (Janvier)

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella sp. CN_Kp107

ncbi_submitter: Max Rubner-Institut


ncbi_country: Russia: Moscow

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Auburn University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Methylocystis silviterrae

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudidiomarina halophila

ncbi_strain_identifiers: NCAIM B.02544

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacillus sp. BR_16

ncbi_submitter: Banaras Hindu University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BR_16


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus cereus group sp. BceL062

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL062


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: Romboutsia timonensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Bacillus sp. NPDC077411

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. NPDC077411


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Monash University


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Amycolatopsis samaneae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces qinzhouensis

ncbi_submitter: Hunan university of science and technology


ncbi_country: China: Hainan

ncbi_isolation_source: Blood;Aneurysm tissue

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: BGI


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides acidifaciens


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Panama: Portobelo

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Symploca sp. SIO3C6

ncbi_submitter: UCSD


ncbi_country: Portugal

ncbi_isolation_source: activated sludge

ncbi_organism_name: Leucobacter aridicollis

ncbi_submitter: Faculty of Chemical Engineering, University of Porto


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_name: Rumen uncultured genome RUG057

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: freshwater MAG --- KR_bin-3867

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 23

ncbi_submitter: Lebanese American University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA7569

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA7569


ncbi_country: USA: West Virginia

ncbi_isolation_source: hydraulically fractured well fluid

ncbi_organism_name: Puniceicoccaceae bacterium 5H

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NRRL WC-3605

ncbi_strain_identifiers: NRRL WC-3605

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_assembly_name: Rumen uncultured genome RUG12233

ncbi_isolation_source: cattle rumen


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: King Abdulaziz University


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Gilliamella sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O25:H4

ncbi_submitter: Fukuoka Institute of Health and Environmental Sciences


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: prostatic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: Linnaeus University


ncbi_isolation_source: human gut

ncbi_organism_name: Enterobacteriaceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Columbia University Medical Center


ncbi_country: Iraq: Jabal Sinjar

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Kyoto Tachibana University


ncbi_organism_name: Paenisporosarcina sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Rhodococcus erythropolis SK121

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Fujian Agriculture and Forestry Universit


ncbi_country: China: Hong Kong

ncbi_isolation_source: Pleural fluid

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Thermacetogenium sp. UBA5451

ncbi_submitter: University of Queensland


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: pheasant chyme

ncbi_organism_name: Loigolactobacillus coryniformis

ncbi_submitter: Kuban State Agrarian University


ncbi_organism_name: Asanoa sp. NPDC050611

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University of the Basque Country


ncbi_country: China: jiangxi

ncbi_isolation_source: wound secretions

ncbi_organism_name: Pigmentibacter sp. JX0631

ncbi_submitter: Hunan Province People's Hospital, (The First Affiliated Hospital of Hunan Normal University)


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Sulfurovum sp. 24-42-9


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_country: Australia: Northern Teritory

ncbi_organism_name: Sodalis sp. CWE

ncbi_strain_identifiers: CWE

ncbi_submitter: Virginia Commonwealth University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Bruguierivoracaceae;g__Sodalis;x__unclassified Sodalis (in: enterobacteria);s__Sodalis sp. CWE


ncbi_country: China: Jiangsu Province

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Canterbury Health Laboratories


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_country: USA: Little Rock; AR

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_assembly_name: Sutterella canine HQ MAG

ncbi_isolate: Sutterella canine HQ MAG

ncbi_isolation_source: Canine feces

ncbi_organism_name: uncultured Sutterella sp.

ncbi_strain_identifiers: Sutterella canine HQ MAG

ncbi_submitter: Vetgenomics, S.L


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_country: India

ncbi_isolation_source: Soil sample from lime-stone open pit mine

ncbi_organism_name: Nonomuraea indica

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: marine college, shandong university


ncbi_country: USA

ncbi_organism_name: Campylobacter cuniculorum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Hunan

ncbi_isolation_source: Fermented vegetables

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Jiangsu University


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China:Guangdong; Zhaoqing

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: SouthChina Agriculture University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2708742384 annotated assembly

ncbi_country: Slovenia: Pragersko

ncbi_organism_name: Aeromicrobium choanae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Laboratory of Veterinary Bacteriology UFRGS


ncbi_organism_name: Dankookia sp. P2

ncbi_submitter: The University of Sydney


ncbi_submitter: Universidad Nacional del Altiplano Puno


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Bartonella apihabitans

ncbi_submitter: Ghent University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Thermoactinomyces intermedius

ncbi_submitter: China Center of Industrial Culture Collection


ncbi_assembly_name: NHR

ncbi_isolation_source: municipal solid waste

ncbi_organism_name: Enterococcus faecalis CBRD01

ncbi_submitter: Igenbio Inc


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium yonathiae

ncbi_submitter: Duke University


ncbi_country: Argentina

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: IL; Urbana

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WM6368

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: bulk soil from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-B-25

ncbi_submitter: Rothamsted Research


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_isolation_source: Brazillian Cerrado Forest soil

ncbi_organism_name: Streptomyces cavourensis

ncbi_submitter: EMBRAPA Environment


ncbi_country: Canada

ncbi_strain_identifiers: BGSC 4H2

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar canadensis


ncbi_country: USA: Stanford campus; California

ncbi_organism_name: Rosenbergiella nectarea subsp. apis

ncbi_submitter: Complutense University of Madrid


ncbi_country: USA:Texas; Upper Laguna Madre

ncbi_isolation_source: PHA nurdle at the sediment-water interface

ncbi_organism_name: Bacillus sp. SRB3LM

ncbi_submitter: Texas A&M - Corpus Christi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SRB3LM


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-0556

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: anal swabs from commercial chicken farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: China: Taiwan

ncbi_isolation_source: water of a fish culture pond

ncbi_organism_name: Novosphingobium piscinae

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: South Korea: Seoul grand park

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. F9

ncbi_submitter: Korea university


ncbi_organism_name: Shewanella sp. CAL98-MNA-CIBAN-0140

ncbi_submitter: University of Florence


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: nasal swab

ncbi_submitter: China Agriculture University


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-70

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: USA: Ohio

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI