ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Georgia

ncbi_genome_representation: full

ncbi_isolation_source: Imported Fresh Produce 14

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Wyoming


ncbi_country: USA: Florida

ncbi_isolation_source: root nodules

ncbi_organism_name: Priestia megaterium

ncbi_submitter: University of Tartu


ncbi_country: Japan

ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Toho University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_assembly_level: Scaffold

ncbi_country: Poland

ncbi_organism_name: Citrobacter sp. wls826

ncbi_submitter: NanKai universit


ncbi_country: Germany: Goettingen

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: wastewater

ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


gtdb_representative: t

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Erysipelotrichaceae bacterium TF05-20AC

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tui Malila hydrothermal plume 10m

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatus Lambdaproteobacteria;x__unclassified Candidatus Lambdaproteobacteria;s__Candidatus Lambdaproteobacteria bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Microbacterium sp. A8/3-1

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Patescibacteria group bacterium UBA5738

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA5738


ncbi_country: Pakistan

ncbi_isolation_source: sputum

ncbi_submitter: National University of Science and Technology


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Stockholm University


ncbi_assembly_level: Chromosome

ncbi_country: Ghana: Greater Accra Region

ncbi_isolation_source: cancer patient

ncbi_submitter: West African Centre for Cell Biology of Infectious Pathogen


ncbi_country: USA: MD

ncbi_isolation_source: feces

ncbi_organism_name: Shigella boydii

ncbi_strain_identifiers: DMB SH20247

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Alabama at Birmingham


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Seattle

ncbi_isolation_source: wound humeral stem explant

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Odoribacter laneus

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: Germany: Hamburg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_assembly_name: Rumen uncultured genome RUG11125

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


gtdb_type_species_of_genus: t

ncbi_country: Chile:Valparaiso;Torpederas Beach

ncbi_isolation_source: Marine sample

ncbi_organism_name: Spiractinospora alimapuensis

ncbi_refseq_category: reference genome

ncbi_submitter: Universidad Tecnica Federico Santa Maria

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC002209

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Guelph

ncbi_isolation_source: Swine manure pit

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Israel: Tel-Hashomer

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Sheba Medical Center


ncbi_country: USA

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mobiluncus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonas alvandae

ncbi_submitter: Cornell University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_country: USA: CT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Zhejiang cancer Hospital


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Marinobacter koreensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Borreliella burgdorferi


ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Michigan


ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Xenorhabdus bovienii

ncbi_submitter: Zurich University of Applied Sciences (ZHAW)


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Staphylococcus petrasii


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG349

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: freshwater MAG --- Umea_bin-07897

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: intestine tissue

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Agro-industry, Prince of Songkla University, wageningen university


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Faecalibaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M13065

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Qinghai Province

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Corynebacterium lujinxingii

ncbi_submitter: China CDC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermodesulfobacteriales bacterium

ncbi_submitter: Portland State University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Rothia mucilaginosa


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Phormidium sp.


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: South Korea: Kyonggi University; Suwon

ncbi_isolation_source: forest soil

ncbi_organism_name: Massilia agilis

ncbi_submitter: University Of Tasmania, Tasmania Inst Agriculture


ncbi_country: Uruguay

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_assembly_name: freshwater MAG --- Loc090402-1m_bin-0126

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom

ncbi_isolation_source: rabbit

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: feces


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: Malaysia

ncbi_isolation_source: water

ncbi_organism_name: Leptospira selangorensis

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: Switzerland

ncbi_isolation_source: sausage (dried; fermented)

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_isolation_source: subacute endocarditis

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: TAILORED-Treatment project


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gluconobacter cerinus

ncbi_submitter: Teagasc


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Serratia sarumanii

ncbi_submitter: Bielefeld University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Spain: Madrid

ncbi_submitter: IRYCIS


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Amesiibacteriota;s__Candidatus Amesbacteria bacterium RIFCSPLOWO2_01_FULL_49_25


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Victivallaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Xinjiang agricultural university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho university


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: chicken fecal

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: chicken fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: China

ncbi_isolation_source: kelp

ncbi_organism_name: Puniceicoccaceae bacterium K14

ncbi_submitter: Shandong university at Weihai


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Ralstonia insidiosa

ncbi_submitter: J.Craig Venter Institute


ncbi_submitter: Mahidol University


ncbi_assembly_name: UNSWCS

ncbi_organism_name: Campylobacter concisus UNSWCS

ncbi_strain_identifiers: UNSWCS

ncbi_submitter: The University of New South Wales


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Robert Koch Institute


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: Swab (dairy plant)

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: China: Henan

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: Huazhong Agriculture university


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Idiomarina sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Acidovorax sp. SUPP2522

ncbi_submitter: Shizuoka University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0632S

ncbi_submitter: Broad Institute


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Macromonas sp.

ncbi_submitter: UNIVERSITY OF NORTH BENGAL


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Federation unviersity


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bilophila wadsworthia


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Florida


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: human gut

ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oxalobacter sp.


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Citrobacter freundii


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_isolation_source: Human (bronchial fluid)

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: geothermally-influenced stream

ncbi_organism_name: Fischerella thermalis WC1110

ncbi_submitter: University of Montana


ncbi_organism_name: Kutzneria sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T35594

ncbi_submitter: Broad Institute


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-339

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chryseobacterium gambrini

ncbi_strain_identifiers: new MAG-339

ncbi_submitter: Micoorganism


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: Japan: Sagami Bay Station P

ncbi_isolation_source: seawater

ncbi_organism_name: Photobacterium aquimaris

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_country: Brazil

ncbi_isolation_source: feces (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Gallintestinimicrobium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Georgia: Dedoplistskaro

ncbi_isolation_source: intestine

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: NCDC of Georgia


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: clinical

ncbi_submitter: FDA/CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:-;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM 43478


ncbi_isolation_source: Mesenteric Lymph Node

ncbi_submitter: Sao Paulo State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: csf

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: Synovial fluid

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Public Health Ontario


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: South Korea: Taean-gun

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Sphingomicrobium sediminis

ncbi_submitter: Korea University


ncbi_isolation_source: DHS Bioreactor

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Water Quality Control Lab, Division of Environmental Engineering, Faculty of Engineering, Hokkaido University


ncbi_country: South Korea

ncbi_isolation_source: blood

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: FL

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Archangium gephyra

ncbi_submitter: Dr. Srikrishna Subramanian, Protein Science and Engineering, Institute of Microbial Technology, Chandigarh, India


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Niallia sp. FSL W8-1348

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Niallia;x__unclassified Niallia;s__Niallia sp. FSL W8-1348


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Methylocystaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University


ncbi_country: Italy

ncbi_organism_name: Bifidobacterium leontopitheci

ncbi_submitter: University of Parma


ncbi_country: Canada: Rouyn-Noranda

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Greece:Thermopyles geothermal spring

ncbi_isolation_source: geothermal water

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Thessaly


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Moline; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Allofournierella massiliensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Korean adult feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Korea Food Research Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolate: AOP28_E1_surf _bin _2

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP28_E1_surf _bin _2

ncbi_submitter: Genoscope


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Atlantic Ocean: East Atlantic Ocean near Canada

ncbi_isolation_source: seawater

ncbi_organism_name: Thalassolituus sp. ESRF-bin18

ncbi_submitter: National Research Council Canada


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 607307-2


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Legionella spiritensis

ncbi_submitter: SC


ncbi_isolation_source: groundwater

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: China Medical University


ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Pennsylvania State University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Colombia: Medellin

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South American MRSA Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UK Health Security Agency


ncbi_country: India

ncbi_isolation_source: stool

ncbi_submitter: Christian Medical College


ncbi_organism_name: Alloalcanivorax dieselolei B5

ncbi_submitter: Third Institute of Oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Martinique

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Connecticut Graf Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Amycolatopsis roodepoortensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Pukyong National University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces flaveolus


ncbi_organism_name: Pseudomonas sp.


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: bacterium UBP9_UBA1085

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP9_UBA1085


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: bacterium 1XD8-76

ncbi_submitter: Chinese Academy of Science


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: Environment

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: BGI


ncbi_assembly_name: Rumen uncultured genome RUG14355

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Imperialibacter sp. EC-SDR9

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_country: Canada: Alberta

ncbi_organism_name: Lutibacter sp.

ncbi_submitter: University of Calgary


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Methylorubrum extorquens

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Chile

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR5872

ncbi_submitter: Broad Institute


ncbi_country: South Korea

ncbi_organism_name: Pseudescherichia sp. L3

ncbi_submitter: Dongguk university


ncbi_country: Italy: Gulf of Naples

ncbi_isolation_source: sediment from river mouth

ncbi_organism_name: Halomonas alkaliantarctica

ncbi_submitter: Stazione Zoologica Anton Dohrn


ncbi_country: USA: NM; Lechuguilla Cave

ncbi_isolation_source: cave surface layer

ncbi_organism_name: Aquamicrobium sp. LC103

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Ireland

ncbi_isolation_source: Kale

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Salmonella, Shigella & Listeria Reference Laboratory


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 3

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Glasgow


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Prevotella sp. UBA3765

ncbi_submitter: University of Queensland


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium sp. E2462

ncbi_submitter: JCVI


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Firmicutes bacterium UBA1426

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA1426


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Santiago

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_strain_identifiers: N


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Colombia

ncbi_isolation_source: xylem

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: UC Davis


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Italy: Sardinia; Santadi

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: University of Minneosta


ncbi_country: Japan

ncbi_isolation_source: patient with whooping cough

ncbi_organism_name: Bordetella pertussis Tohama I

ncbi_strain_identifiers: Tohama I

ncbi_submitter: Serum Institute of India


ncbi_country: Italy

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium xylocopae

ncbi_submitter: University of Bologna


ncbi_country: Netherlands: Breda

ncbi_isolation_source: rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: unverisity medical center groningen


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_organism_name: Enterobacter bugandensis


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Peru

ncbi_isolation_source: String method

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institue


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;s__Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_01_FULL_36_37


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Demequina maris

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Brachybacterium tyrofermentans

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_submitter: Universitaetsklinik Tuebingen


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The University of Queensland


ncbi_isolation_source: bird (jay)

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jiangxi Agricultural University


ncbi_country: China: Shandong

ncbi_isolation_source: saline from maile fever patient 4

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Liaocheng Veteran Hospita


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Thailand: Trang

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Phaeobacter sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_country: Switzerland

ncbi_isolation_source: Tete de Moine

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Agroscope


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: cecal contents

ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- UppL6_bin-1277

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 207

ncbi_organism_name: Staphylococcus succinus

ncbi_strain_identifiers: SNUC 1916

ncbi_submitter: University of Calgary


ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: MI

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California, Davis


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Colombia: Bogota

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: Czech Republic: Moravia

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China

ncbi_isolation_source: Alveolar lavage fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: Portugal

ncbi_submitter: ITQB NOVA


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: Yonsei University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Prevotella corporis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudochrobactrum sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Egerieisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Egerieisoma;x__unclassified Candidatus Egerieisoma;s__Candidatus Egerieisoma sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Monash University


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Citrobacter sp. BNK-41

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterococcus sp. DIV0197

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: IMPAM-CONICET


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Radboud University


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Streptomyces sp. NBC_01077

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Universidad de Concepcion


ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Spyradocola merdavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Christensenellales;f__Christensenellaceae;x__Christensenellaceae incertae sedis;g__Candidatus Spyradocola;s__Candidatus Spyradocola merdavium


ncbi_assembly_name: IMG-taxon 2671180075 annotated assembly

ncbi_organism_name: Nitrosospira sp. Nsp13

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_assembly_name: freshwater MAG --- MJ_bin-1077

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-359

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-359


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: anammox granule sludge

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Chongqing university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Australia: WA; Canna

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. CA10

ncbi_submitter: Curtin University


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: bacterium

ncbi_submitter: Academia Sinica


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 272

ncbi_submitter: SC


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bartonella sp. AR 15-3

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Australia: Sydney

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Western Sydney University


ncbi_country: USA: Minesota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_country: USA: Hickory Corners; Michigan

ncbi_isolation_source: leaf-associated phyllosphere

ncbi_organism_name: Spirosomataceae bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Utah


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: Denmark: Hjorring

ncbi_isolation_source: activated sludge from Hjor_18-Q3-R7-51

ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Fudan University


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC008163

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Shewanellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum


ncbi_country: Taiwan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: AIT AUSTRIAN INSTITUTE OF TECHNOLOGY


ncbi_country: Paraguay: Luque

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Caucasica


ncbi_isolation_source: Bumblebee; B. terrestris

ncbi_organism_name: Secundilactobacillus kimchicus

ncbi_submitter: Ghent University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Universidad Juarez Autonoma de Tabasco

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Pseudoalteromonas sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Acinetobacter proteolyticus

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: Chile: Santiago

ncbi_isolation_source: Pork

ncbi_submitter: Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: fecal composite

ncbi_submitter: USDA


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Crenothrix polyspora

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: EMG


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Kingella sp. (in: b-proteobacteria)

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Neisseriales;f__Neisseriaceae;g__Kingella;x__unclassified Kingella (in: b-proteobacteria);s__Kingella sp. (in: b-proteobacteria)


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Patescibacteria group bacterium UBA1675

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA1675


ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Propionivibrio sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: uncultured Pseudoflavonifractor sp.


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Shenzhen

ncbi_isolation_source: Throat swab 36

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: isolated after culturing directly from an ATCC vial labeled BAA-334

ncbi_organism_name: Streptococcus sp. DBCMS

ncbi_strain_identifiers: DBCMS

ncbi_submitter: FDA


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Grass with Chicken Manure

ncbi_strain_identifiers: GP T1 LAM CEF 3

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Paradip Port; Odisha

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute of Technology Rourkela


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_organism_name: Mucispirillum schaedleri


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Corynebacterium suicordis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: France

ncbi_isolation_source: patient

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Paris Sud


ncbi_isolation_source: from anaerobic green syntrophic mixed culture

ncbi_organism_name: Desulfuromonas acetoxidans

ncbi_submitter: Bellevue University


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Biomin Research Center


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-0397

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Yoonia sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Fusobacteriota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Xiamen University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: Denmark

ncbi_isolation_source: lactic starter

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: CIRM-BIA 635

ncbi_submitter: Brigham Young University


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Maritimibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Dialister sp. CAG:486

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Spain: Salamanca

ncbi_isolation_source: nodules

ncbi_organism_name: Micromonospora noduli

ncbi_submitter: Universidad de Salamanca


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium nuruki

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Spain: Matilla La Seca; Zamora

ncbi_isolation_source: rhizosphere of alfalfa

ncbi_organism_name: Endobacter medicaginis

ncbi_submitter: CSIC


ncbi_country: Switzerland

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangzhou

ncbi_isolation_source: Broncho-alveolar lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College London (UCL)


ncbi_organism_name: Pectobacterium brasiliense

ncbi_strain_identifiers: 1Aia d

ncbi_submitter: Centro de Investigaciones y Transferencias, Universidad Nacional de Villa Maria (CIT-CONICET)


ncbi_country: USA

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_country: Australia

ncbi_submitter: Microbiological Diagnostic Unit

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Limosilactobacillus sp.


ncbi_country: Japan: Yoshiura in Kamogawa

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Flammeovirga kamogawensis

ncbi_submitter: Kyung Hee University


ncbi_country: South Korea

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hallym University


ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Shanghai

ncbi_isolation_source: tap water incubated with methane

ncbi_organism_name: Methylophilus sp. TWE2

ncbi_submitter: fudan university


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Enterorhabdus sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Malawi

ncbi_isolation_source: CSF


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate and no molasses at 250 mg/L thiocyanate

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_assembly_name: Salmonella enterica CVM N32773-SQ v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Pork Chop

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Worthington


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Streptococcus jiangnanensis

ncbi_submitter: Jiangnan University


ncbi_assembly_name: Rumen uncultured genome RUG13358

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Neobacillus sp. Marseille-Q6967

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: Austria: Mondsee

ncbi_isolation_source: Creek Moosbach

ncbi_organism_name: Aquirufa antheringensis

ncbi_submitter: University of Innsbruck


ncbi_country: USA: DC

ncbi_isolation_source: Blood

ncbi_organism_name: Bacillus sp. FDAARGOS_235

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. FDAARGOS_235


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii AB_2008-15-71

ncbi_submitter: Translational Genomics Research Institute


ncbi_organism_name: Mycoplasma sp. Z407A

ncbi_submitter: Institute of Microbiology


ncbi_country: India: Khirganga hotspring; Himachal Pradesh; Northern Hiamayas

ncbi_isolation_source: hotspring water

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: University of Delhi


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China

ncbi_isolation_source: activated sludge

ncbi_organism_name: Sinanaerobacter chloroacetimidivorans


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_country: France

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_country: USA

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: USA: FL

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Cycloclasticus sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Brucella suis bv. 3 str. 686

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella suis;x__Brucella suis bv. 3;x__Brucella suis bv. 3 str. 686


ncbi_assembly_name: Rumen uncultured genome RUG12654

ncbi_organism_name: Selenomonas ruminantium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_country: Chile: Santiago

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: KYUNG HEE UNIVERSITY


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University College Cork


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_strain_identifiers: Bir 310

ncbi_submitter: SC


ncbi_submitter: Bio-Nano Electronics Research Centre, Toyo University


ncbi_country: China: Jiangsu

ncbi_isolation_source: Laying hen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Salinispora tropica CNT250

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Amycolatopsis sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: blood


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_country: USA: Memphis; TN

ncbi_isolation_source: stool sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0054

ncbi_submitter: Broad Institute


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium sp. MSK194

ncbi_submitter: Duke University


ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_assembly_name: freshwater MAG --- A14_bin-0914

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Desulfuromonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: AOP35_03-ete_surf _bin _7

ncbi_organism_name: Actinomycetaceae bacterium

ncbi_strain_identifiers: AOP35_03-ete_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: PARUL UNIVERSITY


ncbi_organism_name: Mycolicibacterium nivoides

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Cellulosimicrobium funkei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nonomuraea sp. NPDC050536


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Opitutaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Paraperlucidibaca wandonensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Iowa


ncbi_assembly_name: Rumen uncultured genome RUG10286

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Bacteroides caccae


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_submitter: Sun Yat-sen University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificota bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2684623024 annotated assembly

ncbi_organism_name: Streptomyces sp. 2112.2

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: delta ANR S2-2

ncbi_submitter: US Army CCDC Chemical Biological Center


ncbi_country: United Kingdom: Hatchlands

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Silvania hatchlandensis

ncbi_submitter: UWE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Pantoea sp.

ncbi_submitter: EBI


ncbi_country: USA: AR

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: USA

ncbi_organism_name: Escherichia coli O26:H11 str. 05-3646

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. 05-3646


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides gordonii;x__Parabacteroides gordonii MS-1 = DSM 23371


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Africa

ncbi_isolation_source: Spinach

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 3874

ncbi_submitter: University of Exeter


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Queen's University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Zhongshania sp.

ncbi_submitter: University of Bristol


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacillus shihchuchen

ncbi_submitter: National Pingtung University of Science and Technology


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Helicobacter sp.

ncbi_submitter: AAFC


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_49_17


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7213

ncbi_submitter: University of Queensland


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories


ncbi_organism_name: uncultured Anaerolinea sp.


ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG294

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Brucella pseudintermedia

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: uncultured Citrobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea: Gyeongbuk

ncbi_isolation_source: steamed conch

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: serial passage in embryonated hens eggs followed by passage in ACCM-2 media

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: Nine mile (Phase II)

ncbi_submitter: Moredun Research Institute


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Costa Rica: San Jose Province; Sabanilla

ncbi_isolation_source: leaf

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: cBio Corp


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Korea:Gwangju

ncbi_isolation_source: kimchi

ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: world institute of kimchi


ncbi_country: USA: IL

ncbi_isolation_source: environmental swab sponge bakery hallway

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: Australia

ncbi_isolation_source: water

ncbi_organism_name: Ignavibacteria bacterium UBA5798

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium UBA5798


ncbi_country: India: Tagor Basti; Sakti Village; Leh

ncbi_isolation_source: pea root nodules

ncbi_organism_name: Rhizobium hidalgonense

ncbi_strain_identifiers: JKLM 19E

ncbi_submitter: National Centre for Cell Science


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Rhodothermaceae bacterium


ncbi_organism_name: Kurthia zopfii


ncbi_country: China: Yunnan

ncbi_organism_name: Dietzia cercidiphylli

ncbi_submitter: Peking University


ncbi_organism_name: Streptococcus pluranimalium

ncbi_submitter: JiLin Agricultural Scuence and Technolog


ncbi_organism_name: Streptosporangium saharense

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Fort Sam Houston

ncbi_isolation_source: wound; right thigh

ncbi_organism_name: Escherichia coli

ncbi_submitter: Miami University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Urethral

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: China: Hunan

ncbi_isolation_source: uterus

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: China

ncbi_isolation_source: cell culture of Alexandrium minutum 1089

ncbi_organism_name: Sulfitobacter alexandrii

ncbi_submitter: East China Sea Fisheries Research Institute


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae WGLW1


ncbi_country: USA

ncbi_strain_identifiers: ISU 931

ncbi_submitter: USDA-ARS


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany

ncbi_isolation_source: soil

ncbi_organism_name: Sutcliffiella horikoshii

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: duodenum

ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: Human Microbiology Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Italy: Molveno (TN)

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_submitter: Institut Pasteur


ncbi_organism_name: Lentimonas sp.

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__Verrucomicrobiota incertae sedis;g__Lentimonas;x__unclassified Lentimonas;s__Lentimonas sp.


ncbi_organism_name: Saccharopolyspora kobensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_strain_identifiers: NCPPB 2655

ncbi_submitter: Oregon State University


ncbi_organism_name: Candidatus Hydrogenedens sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;x__unclassified Candidatus Hydrogenedens;s__Candidatus Hydrogenedens sp.


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Georgia Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Limosilactobacillus fermentum CECT 5716

ncbi_strain_identifiers: CECT 5716

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: New Zealand

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium colombiense

ncbi_submitter: JCVI


ncbi_organism_name: Shewanella algae

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Devosia sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Alistipes avistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. NW91

ncbi_submitter: Sichuan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lund University


ncbi_organism_name: Flavobacteriales bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Firmicutes bacterium CAG:321_26_22

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:321_26_22


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University hospital Lubeck


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Blautia sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: EMG


ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Kangwon Natl. Univ.


ncbi_country: China: Jiangsu

ncbi_isolation_source: probiotic product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: south china agriculture university


ncbi_isolation_source: Ohio soil

ncbi_organism_name: Pseudomonas protegens

ncbi_strain_identifiers: Clinton

ncbi_submitter: Ohio State university


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: Canada: Newfoundland and Labrador;St. John s

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_country: Serbia: Stopanja-Vernjacka Banja

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Rectal

ncbi_submitter: Washington University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Qingdao

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Shandong University


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Ares Genetics


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Thailand


ncbi_assembly_name: freshwater MAG --- LJ-3-15m_bin-0468

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Viet Nam:Dak Lak; Yok Don National Park

ncbi_isolation_source: Soil

ncbi_organism_name: Paenibacillus tyrfis

ncbi_submitter: Lab of Bio-molecular and Gene technology, Institute of Biotechnology and Environment, Tay Nguyen University


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Treponemataceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: St. Louis

ncbi_isolation_source: Intraabdominal infection

ncbi_organism_name: Acinetobacter variabilis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Seoul National University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Fictibacillus phosphorivorans

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: Ireland: Kilkieran Bay

ncbi_organism_name: Streptomyces sp. SM1

ncbi_submitter: University College Cork, Ireland


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium sp. HCS.1

ncbi_submitter: University of Chicago


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Lysobacterales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Brucella abortus 65/63

ncbi_submitter: Broad Institute


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_submitter: Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar II 1,4,12,27:e,n,x:e,n,x