ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: United Kingdom

ncbi_genome_representation: full

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_assembly_level: Contig

ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Ethiopia: Babile; Somali region

ncbi_isolation_source: fermented camel milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Research Group for Gut, Microbes and Health


ncbi_country: Australia: Melbourne

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_organism_name: Salmonella sp. NW993

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Chromosome

ncbi_country: USA: Seattle; WA

ncbi_isolation_source: epithelial cells

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: Oregon State University


gtdb_representative: t

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: USA: Toombs Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: Tunisia

ncbi_submitter: ANSES


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3842

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3842


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Tenacibaculum sp. 47A_GOM-205m

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Clostridiaceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Oceanospirillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Quzhou

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces sp. NPDC000961

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Isolate 23

ncbi_isolate: Isolate 23

ncbi_isolation_source: blood culture

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Isolate 23

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_country: USA: HHS Region 5

ncbi_isolation_source: clinical urine culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: carbapenem-resistant blaNDM-1

ncbi_submitter: FNLCR


ncbi_assembly_name: Rumen uncultured genome RUG13799

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: Haiti

ncbi_isolation_source: gray water; external clinic

ncbi_organism_name: Vibrio cholerae HE-46

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Ochrobactrum sp. J50


ncbi_country: Germany: Hesse; Gross-Gerau

ncbi_isolation_source: foods

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_country: Spain: Valencia

ncbi_isolation_source: Biofilm clogging water pumps in ice machines

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Darwin Bioprospecting Excellence


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: University of Nigeria, Nsukka, Nigeria


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Hydrogenophaga intermedia

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Wits University


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-0809

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriia bacterium

ncbi_submitter: BILS


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_organism_name: Saccharomonospora xinjiangensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: Enterococcus casseliflavus


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_country: Australia

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of New South Wales


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Cyanobium sp. NIES-981

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Bangladesh:Chokoria; Cox s Bazar

ncbi_isolation_source: Sandy soil

ncbi_organism_name: Catellatospora chokoriensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)

ncbi_type_material_designation: assembly from type material


ncbi_assembly_name: freshwater MAG --- E14_bin-0687

ncbi_isolation_source: pond


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Eubacterium callanderi

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-2267

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: fecal of pig

ncbi_organism_name: Acinetobacter variabilis

ncbi_submitter: Guangxi University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_isolation_source: cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Paraeggerthella hongkongensis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_organism_name: Amycolatopsis arida

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Sichuan

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Chile: Region del Maule; Estero Los Robles

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Chicago

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium xenopi

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Tropheryma whipplei str. DigADP25

ncbi_submitter: ebi


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Brazil: Sao Paulo; Ribeirao Preto

ncbi_isolation_source: Tracheal Secretion

ncbi_submitter: Ribeirao Preto Medical School - USP


ncbi_country: Mexico: Mexico city

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: MN

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: United Kingdom: London

ncbi_isolation_source: carious dentine tooth oral cavity

ncbi_organism_name: Mogibacterium timidum

ncbi_submitter: The Forsyth Institute


ncbi_isolation_source: nasopharynx


ncbi_country: South Korea: Miryang

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Seoul National University


ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Haukeland University Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_organism_name: Vibrio mimicus SX-4

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: Brazil: Rio das Ostras

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Pseudoalteromonas sp. B160

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Denmark: Esbjerg E

ncbi_isolation_source: activated sludge from EsbE_18-Q3-R3-47

ncbi_organism_name: Propionivibrio sp.

ncbi_submitter: Aalborg University


ncbi_country: Switzerland

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Tang lab


ncbi_country: Germany: Goettingen

ncbi_isolation_source: tomato rhizosphere

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: Finland

ncbi_isolation_source: saliva

ncbi_organism_name: Capnocytophaga genosp. AHN8471

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Antarctica

ncbi_isolation_source: microbial mat ULC027

ncbi_organism_name: Phormidesmis priestleyi

ncbi_submitter: ULg


ncbi_country: Canada: Rivire St-Jean; Gasp; Quebec

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_country: Australia: Brisbane

ncbi_isolation_source: lungs of cystic fibrosis patient C

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Queensland


ncbi_country: China: Guangxi

ncbi_isolation_source: stool

ncbi_submitter: Giangxi Center for Disease Prevention and Control


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Limosilactobacillus antri

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_country: Canada: Quebec

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Government of Canada


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_organism_name: Collimonas fungivorans


ncbi_organism_name: Flavobacterium sp. ZB4R12

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Mycobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sutcliffiella horikoshii

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolate: POADKOJP

ncbi_organism_name: Candidatus Stammera capleta

ncbi_strain_identifiers: POADKOJP

ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Weissella hellenica

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Hospital Muenster


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Case 6

ncbi_submitter: National Reference Centre for Multidrug-resistant Gram-negative Bacteria (NRC)


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cb022

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Nanjing university


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Communicable Disease


ncbi_isolation_source: wound material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CEBITEC


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium acidiphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella;s__Legionella sainthelensi;x__Legionella sainthelensi ATCC 35248 = DSM 19231


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_organism_name: Arthrobacter oryzae


ncbi_country: Germany

ncbi_isolation_source: healthy cow feces

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Qingdao Agriculture University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Finniella inopinata

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Rumen uncultured genome RUG14635

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: South Africa: Pietermaritzburg

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: Bahamas: Crescent Pond; Cockburn Town; San Salvador

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: University of Tennessee


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_submitter: Zhejiang university


ncbi_country: Brazil: Botucatu; Sao Paulo State

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sao Paulo State University


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Spain: Palencia

ncbi_isolation_source: lymph node abscess

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency (FOI)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Russia: Moscow

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences


ncbi_assembly_name: Salmonella enterica CVM N45398 v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albany


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_isolation_source: alveolar lavage fluid

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Laboratory for Diagnosis and Treatment of Infectious Diseases


ncbi_organism_name: Sphingobacterium sp. MYb388

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0060

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: The Institute of Medicinal Plant Development


ncbi_organism_name: Bifidobacterium aesculapii

ncbi_refseq_category: reference genome

ncbi_submitter: Kyushu University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P3 C A7

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Mycoplasmataceae bacterium


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: CANDO+P Bioreactor

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Northwestern University


ncbi_isolation_source: Colon

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: University of Bristol


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mesonia sp.

ncbi_submitter: Tang lab


ncbi_country: Thailand: Chiang Mai

ncbi_isolation_source: food

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: Fujian Normal University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Sweden

ncbi_isolation_source: bovine milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_country: Australia: Orange

ncbi_isolation_source: soil

ncbi_organism_name: Rouxiella badensis

ncbi_submitter: Charles Sturt University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Ruminococcus sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospira sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Blood

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria innocua

ncbi_submitter: CSIRO


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_isolate: Pseudomonas sp. Kh13

ncbi_organism_name: Pseudomonas sp. Kh13

ncbi_strain_identifiers: Pseudomonas sp. Kh13


ncbi_country: Poland

ncbi_organism_name: Hafnia alvei

ncbi_submitter: nankai university


ncbi_isolation_source: unknown

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


gtdb_type_species_of_genus: t

ncbi_country: Tunisia: Sfax

ncbi_isolation_source: superficial sediment of a solar saltern

ncbi_organism_name: Paludifilum halophilum

ncbi_submitter: University of Neuchatel


ncbi_organism_name: Francisella adeliensis

ncbi_submitter: Swedish Defence Research Agency (FOI)


ncbi_organism_name: Janthinobacterium sp. B9-8

ncbi_submitter: Nanjing Tech University


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: California Department of Public Health


ncbi_country: Serbia: Rimski Sancevi

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_assembly_name: CrypD

ncbi_isolate: CRYPD

ncbi_isolation_source: gill tissue

ncbi_organism_name: uncultured Candidatus Thioglobus sp.

ncbi_strain_identifiers: CRYPD

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__environmental samples;s__uncultured Candidatus Thioglobus sp.


ncbi_organism_name: uncultured Faecalibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Nocardia puris

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Volcanic Eifel; Andernach

ncbi_isolation_source: groundwater from cold water geyser; filtered on 0.1um pore size filters

ncbi_organism_name: Hydrogenophilus sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Fimenecus;s__Candidatus Fimenecus excrementigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;s__Candidatus Fimenecus excrementigallinarum


ncbi_organism_name: Nocardia sp. NPDC127526

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. NW1248

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Universite Laval


ncbi_organism_name: Achromobacter marplatensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Puia sp. P3

ncbi_submitter: The University of Sydney

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;f__Chitinophagaceae;g__Puia;x__unclassified Puia;s__Puia sp. P3


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_44_13


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: The Ohio State University


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Cuba: San Jose de Las Lajas

ncbi_isolation_source: Rectal Swab

ncbi_submitter: University of Bern


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Denmark: Slagelse

ncbi_isolation_source: urine

ncbi_organism_name: Aerococcus mictus

ncbi_submitter: Region Zealand


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Portugal

ncbi_organism_name: Xanthomonas fragariae

ncbi_strain_identifiers: WHRI 6148

ncbi_submitter: University of Exeter


ncbi_isolation_source: Human

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Infection, Veterinary & Ecological Sciences


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Ningxia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Streptosporangiales bacterium

ncbi_submitter: Princeton University


ncbi_organism_name: uncultured Armatimonadia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: University of Calgary


ncbi_country: New Zealand

ncbi_organism_name: Sphingobium scionense

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA

ncbi_isolation_source: blood culture from newborn with neonatal bacterimia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_country: Sweden

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: mBioClim


ncbi_organism_name: Acinetobacter baumannii AB_TG27339

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: Belgium

ncbi_organism_name: Enterococcus asini

ncbi_submitter: Sciensano


ncbi_isolation_source: Luria Bertani broth Miller

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Georgia


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 30 (4-2661829)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 30 (4-2661829)


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Kitasatospora sp. NPDC048343

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Amylibacter sp.

ncbi_submitter: German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: MD

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: Catheter

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Shenzhen People's Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: fish farm water

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: ITG P18

ncbi_submitter: INRA STLO


ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Hydrococcus sp. Prado102

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Pleurocapsales;f__Hydrococcaceae;g__Hydrococcus;x__unclassified Hydrococcus (in: cyanobacteria);s__Hydrococcus sp. Prado102


ncbi_country: Egypt: Alexandria

ncbi_submitter: University of East Anglia


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: INRAE


ncbi_country: Finland

ncbi_organism_name: Streptococcus halichoeri

ncbi_submitter: Helsinki University


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_organism_name: Yersinia frederiksenii

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Agitococcus sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Microcystis sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Roseobacter sp. HKCC-CH-9351

ncbi_submitter: Shenzhen Research Institute, The Chinese University of Hong Kong


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium sulfidigenes


ncbi_organism_name: Cronobacter dublinensis 1210

ncbi_submitter: LifeTech


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy: Cesena

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. Bc029

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bc029


ncbi_country: Venezuela

ncbi_isolation_source: Soil

ncbi_organism_name: Planobispora longispora

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Stackebrandtia albiflava

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Ponticoccus sp. SC6-49

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Guangdong; South Lake

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: biopsy

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_isolation_source: VPI-5482 strain bearing Engineered Riboregulator and CRISPR Device after conjugation at day 21

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5461

ncbi_submitter: University of Queensland


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 4 / D; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisbacteria bacterium GWD2_39_127


ncbi_country: United Kingdom: Cambridge

ncbi_organism_name: Escherichia coli

ncbi_submitter: MRC Laboratory of Molecular Biology


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter gerneri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Chengdu

ncbi_organism_name: Syntrophomonas sp. UBA5373


ncbi_country: USA: California

ncbi_isolation_source: Advanced Water Purification Facility

ncbi_organism_name: Methylophilus sp.

ncbi_submitter: Colorado School of Mines


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Pseudobowmanella zhangzhouensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Scybalocola faecigallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum


ncbi_organism_name: Escherichia sp. WS504

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Prochlorococcus sp. MIT 0714


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: SA Pathology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Arcicella sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aromatoleum evansii

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: metagenome

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Shigella dysenteriae

ncbi_strain_identifiers: ATCC 9753

ncbi_submitter: CDC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Center for Microbial Communities


ncbi_country: China:Hubei; Xianning

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. Fer1-1

ncbi_submitter: University of Texas at Austin


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IHU Genomes


ncbi_country: Colombia

ncbi_isolation_source: peritoneal fluid

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Calgary


ncbi_isolation_source: gut of vertebrate mammal

ncbi_organism_name: Ruminococcus sp. UBA3387


ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: cold seep

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China

ncbi_isolation_source: hyperthermophilic anaerobic system

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Fribourg


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_62 WWTPs effluent

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Filifactor alocis


ncbi_country: South Korea:Jeju; Mara Island

ncbi_isolation_source: Soil of cliff

ncbi_organism_name: Actinocatenispora rupis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Italy

ncbi_isolation_source: urethral swab

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Guatemala: Quetzaltenango

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: BALF

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Peking University People's Hospital


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: Beijing Institute of Genomics, CAS


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Desulfobulbaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Escherichia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: University of Ibadan, Nigeria


ncbi_country: China: Guangzhou

ncbi_isolation_source: activated sludge from a waste-water treatment plant

ncbi_organism_name: Shewanella decolorationis S12

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: USA: MA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: adult hen caecal content

ncbi_organism_name: Bacteroides sp. ET336

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Center for Laboratory Medicine


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Campylobacter coli

ncbi_submitter: chu de bordeaux


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 106 (4-6881831)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 106 (4-6881831)


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella sp. GG_Kp132

ncbi_submitter: Max Rubner-Institut


ncbi_country: China:Shandong Province

ncbi_isolation_source: peony rhizosphere

ncbi_organism_name: Streptomyces albireticuli

ncbi_submitter: Shandong Agricultural University


ncbi_country: China: Hebei province

ncbi_isolation_source: nasopharyngeal swabs

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Nonlabens sp.

ncbi_submitter: Linnaeus University


ncbi_isolation_source: chicken

ncbi_organism_name: Enterococcus durans

ncbi_strain_identifiers: VREdu

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: addis ababa university


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Candidatus Aalborgicola danicus

ncbi_submitter: Aalborg University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica bacterium RIFCSPHIGHO2_12_FULL_44_12


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: China: Guangxi

ncbi_isolation_source: hot spring

ncbi_organism_name: Thermus arciformis

ncbi_submitter: School of Life Science


ncbi_organism_name: Hyphomonas atlantica

ncbi_submitter: Tang lab


ncbi_country: India

ncbi_isolation_source: Sesame Seed

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000205


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Rumen uncultured genome RUG108

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: stomatology

ncbi_organism_name: Veillonella sp. 3960

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Nitriliruptorales bacterium

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Cambodia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Arizona

ncbi_isolation_source: Alveolar lavage specimen

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers of Disease Control


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Mongolia: Zamyn-Ude

ncbi_organism_name: Yersinia pestis

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing , China


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Minnesota

ncbi_organism_name: Xanthomonas translucens

ncbi_submitter: University of Minnesota


ncbi_country: France: puy de Dome summit

ncbi_isolation_source: cloud water

ncbi_organism_name: Sphingomonas aerolata

ncbi_submitter: Universite de Strasbourg


ncbi_organism_name: Streptomyces sp. NPDC050549

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Siminovitchia fortis

ncbi_submitter: BGI


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__environmental samples;s__uncultured Candidatus Sumerlaeota bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Pseudomonas sp. RHF3.3-3

ncbi_submitter: Ghent University


ncbi_organism_name: Cloacibacterium normanense

ncbi_submitter: Xiamen University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces fungicidicus


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin28

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: HIE bin28

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sulfurihydrogenibium azorense

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_organism_name: Thermosulfidibacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: EPFL


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute


ncbi_assembly_name: uncultured Cand. Thioglobaceae LS08H_Bin2

ncbi_isolation_source: Octocoral

ncbi_submitter: iBB-IST


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA

ncbi_isolation_source: patient with gastritis

ncbi_organism_name: Helicobacter pylori Hp H-1

ncbi_strain_identifiers: Hp H-1

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Kenya

ncbi_organism_name: Cyanobacteria bacterium UBA791

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA791


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA: Washington state; Ritzville

ncbi_isolation_source: wheat rhizosphere

ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: Universite de Moncton


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: Eye

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of California Davis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Japanese tripe stew

ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: NIHS


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: University of Chicago


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: KEMRI


ncbi_country: China: Sichuan

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: acrmg

ncbi_submitter: NHGRI/NIH


ncbi_country: China: Xinjiang Uygur Autonomous Region; Beitun

ncbi_organism_name: Bartonella grahamii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Colombia

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. WAC 06738

ncbi_submitter: McMaster University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Auckland


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_country: Colombia: Antioquia; Rionegro

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Antioquia


ncbi_organism_name: uncultured Crocinitomix sp.


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pseudomonas syringae pv. theae

ncbi_submitter: Shizuoka University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. theae


ncbi_submitter: Microbiology, Fujita Health University School of Medicine


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_isolation_source: baby blood culture

ncbi_submitter: UMR9198, Universite Paris Saclay

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Prevotella melaninogenica


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Humidesulfovibrio sp.

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Cacconaster merdequi

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cacconaster;s__Candidatus Cacconaster merdequi


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_organism_name: uncultured Sandaracinobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_country: Palau

ncbi_isolation_source: marine sediment

ncbi_organism_name: Ornithinimicrobium sp. CNJ-824

ncbi_submitter: Scripps Institution of Oceanography, UCSD


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: tongue scraping

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Tengchong; Yunnan

ncbi_isolation_source: hot spring sludge

ncbi_organism_name: Alicyclobacillus hesperidum URH17-3-68

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: National Cancer Institute - NIH


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_country: Canada: British Columbia

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Candidatus Alistipes avistercoris

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Switzerland

ncbi_isolation_source: meat environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0015

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Bordetella avium

ncbi_submitter: University of Helsinki


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Yingkou

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_assembly_name: Pvir

ncbi_isolate: Pvir

ncbi_organism_name: Candidatus Dasytiphilus stammeri

ncbi_strain_identifiers: Pvir

ncbi_submitter: Max Planck Institute for Chemical Ecology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Dasytiphilus;s__Candidatus Dasytiphilus stammeri


ncbi_country: USA: Columbus; Ohio

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; Subgingival plaque

ncbi_organism_name: Tannerella sp. oral taxon 808

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;x__unclassified Tannerella;s__Tannerella sp. oral taxon 808


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_submitter: University of Alabama Birmingham


ncbi_country: China:Inner Mongolia

ncbi_isolation_source: pasture

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: College of Chemical Engineering, Inner Mongolia University of Technology


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: environment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Chile: Puerto Montt

ncbi_isolation_source: human with diarrhea assosiated with seafood cunsumption; Hospital General

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Omics Solutions


ncbi_country: Brazil

ncbi_organism_name: Xanthomonas campestris pv. viegasii

ncbi_strain_identifiers: NCPPB 4351

ncbi_submitter: University of Exeter


ncbi_submitter: wenzhou medical university


ncbi_country: China: Hangzhou

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Klebsiella sp. 129172

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: USA

ncbi_organism_name: Escherichia coli PA5

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Paenibacillus amylolyticus

ncbi_submitter: Agriculture Victoria


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Waltera sp.


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Ferrimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Dysosmobacter welbionis


ncbi_submitter: Ural Scientific Research Institute of Maternity and Child Care


ncbi_organism_name: Adlercreutzia sp.


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Ghent University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad de Guadalajara


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Ornithinibacillus scapharcae TW25

ncbi_submitter: Kyung Hee University, Republic of Korea


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonella sp.


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: Stool Specimen

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: icddr,b


ncbi_country: Russia: Tatarstan

ncbi_isolation_source: Rhizospheric soil

ncbi_organism_name: Stenotrophomonas indicatrix

ncbi_submitter: Laboratory of Molecular Genetics and Microbiology Methods


ncbi_organism_name: Micromonospora sp. NPDC050200

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__candidate division WOR-1 bacterium RIFOXYC2_FULL_37_10


ncbi_country: Sweden: near Abisko

ncbi_isolation_source: freshwater lake sediment

ncbi_organism_name: bacterium

ncbi_submitter: University of California, Davis


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: National Institute of Allergy and Infectious Diseases, National Institutes of Health


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Qinglan Harbour; Wenchang; Hainan

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Streptomyces qinglanensis

ncbi_submitter: Wuhan University


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Sun-yat Sen University


ncbi_country: Italy: Policoro

ncbi_isolation_source: whole insect macerate from a lab maintained population of field collected O. laevigatus

ncbi_organism_name: Serratia sp. OLDL1

ncbi_submitter: Swansea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. OLDL1


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_organism_name: Escherichia coli DEC10D

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Staphylococcus aureus SA7-LAU WGS

ncbi_country: Lebanon: Byblos

ncbi_isolation_source: Abscess

ncbi_organism_name: Staphylococcus aureus SA7-LAU

ncbi_submitter: Lebanese American University


ncbi_isolation_source: Armpit

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_organism_name: Micromonospora sp. MSM11

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6523

ncbi_submitter: Ministry of Science and Technology of China


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_organism_name: Candidatus Aldehydirespirator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Arachnia sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: caecum

ncbi_organism_name: Parasutterella secunda

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of California at Davis


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany: Wietze

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Streptomyces sp. NPDC096046

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas sp. GD04145

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Rifle well CD01 at time point 5 / E; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWE2_41_25

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWE2_41_25


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: Northeastern University


ncbi_country: Germany: west of Rottenburg an der Laaber

ncbi_isolation_source: sediment|groundwater

ncbi_organism_name: Dechloromonas denitrificans

ncbi_submitter: Helmholtz Zentrum Muenchen


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Ferrovibrio sp.


ncbi_organism_name: Acinetobacter lactucae

ncbi_submitter: Guangxi University


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-700

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: South Africa: Cape Town

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: NM; Lechuguilla Cave

ncbi_isolation_source: cave surface

ncbi_organism_name: Rhizobiaceae bacterium LC148

ncbi_submitter: Deakin University


ncbi_country: Costa Rica

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-5384

ncbi_organism_name: uncultured Flavobacteriia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;x__environmental samples;s__uncultured Flavobacteriia bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Thermobifida alba

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Leibniz Institute for Natural Product Research and Infection Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: Italy: Udine

ncbi_isolation_source: blood

ncbi_submitter: Pseudomonas Italian work group


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hanzhong Central Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Kazakhstan: Aktobe

ncbi_isolation_source: suspension

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: Ramlibacter sp. PS4R-6

ncbi_submitter: Hankyong National University


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: Kenya: Kibera

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Casimicrobiaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Symbiobacteriaceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Halothermothrix sp. UBA3952

ncbi_submitter: University of Queensland


ncbi_country: China: Foshan City; Guangdong Province

ncbi_submitter: SCAU


ncbi_country: South Africa: Free State

ncbi_isolation_source: Processed beef patties sold at a retail outlet

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: Umea University


ncbi_organism_name: Marinomonas arctica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp13 AA75

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp13 AA75

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Sulfurimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Chung Hsing University


ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes inops


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Streptomyces sp. NPDC102424

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Nannocystaceae bacterium


ncbi_organism_name: Streptococcus thermophilus


ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Luteimonas soli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Anhui

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Nebraska

ncbi_isolation_source: cervico-vaginal swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: United State Department of Agriculture


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Brevundimonas vesicularis

ncbi_submitter: Guangxi University


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Adhaeribacter sp.

ncbi_submitter: Colorado State University