ncbi_organism_name: Paenirhodobacter enshiensis

ncbi_submitter: Xiamen University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


gtdb_representative: t

ncbi_country: Sweden

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_level: Scaffold

ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shaanxi

ncbi_isolation_source: lab culture

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Northwest A & F University


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: IA

ncbi_isolation_source: excrement

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Paracoccaceae bacterium


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: Pakistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cardiff University


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Sphingobium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Cardinium sp.

ncbi_submitter: Crop Reserch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Amoebophilaceae;g__Candidatus Cardinium;x__unclassified Candidatus Cardinium;s__Candidatus Cardinium sp.


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: China Jiliang University


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Saudi Arabia: KAUST

ncbi_isolate: amx

ncbi_isolation_source: marine ANAMMOX bioreactor

ncbi_organism_name: Candidatus Scalindua sp.

ncbi_strain_identifiers: amx

ncbi_submitter: KAUST

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;x__unclassified Candidatus Scalindua;s__Candidatus Scalindua sp.


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_level: Complete Genome

ncbi_country: Poland: Kielce

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Jan Kochanowski University


ncbi_country: Colombia: Valle

ncbi_isolation_source: Blood culture

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Mississippi

ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Ralstonia solanacearum UW551

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia solanacearum;x__Ralstonia solanacearum UW551


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Blastopirellula marina

ncbi_submitter: University Duisburg-Essen


ncbi_country: USA: Seymour; Indiana

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium sp. K41

ncbi_submitter: Central Michigan University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: China: Tianjin

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_organism_name: Bauldia sp.

ncbi_submitter: Czech Academy of Science


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 186 (4-3405044)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 186 (4-3405044)


ncbi_country: China: Sichuan

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_strain_identifiers: ScYc-b

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Texas

ncbi_organism_name: Brevundimonas bullata

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada

ncbi_isolation_source: Feedlot Water bowl

ncbi_organism_name: Sphingobacterium faecium

ncbi_submitter: Western College of Veterinary Medicine


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Capnocytophaga sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Akkermansia muciniphila

ncbi_strain_identifiers: CSUN-50 AmII

ncbi_submitter: California State University, Northridge


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: China

ncbi_isolation_source: irrigation Solution

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Bifidobacterium coryneforme

ncbi_submitter: Northeast Agricultural University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Netherlands

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_submitter: Huashan hospital


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Helicobacter winghamensis

ncbi_strain_identifiers: ATCC BAA-431

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: United Kingdom: Boho; Fermanagh

ncbi_organism_name: Streptomyces sp. McG5

ncbi_submitter: Ruder Boskovic Institute


ncbi_organism_name: Hylemonella sp.

ncbi_submitter: University of Calgary


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Helmholtz Center Munich


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasisuis

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of Waterloo


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South Dakota State University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. DSS69

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_organism_name: Streptomyces sp. AA1529

ncbi_submitter: BGI Research


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_strain_identifiers: TIGMIC

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Dethiobacter sp.


ncbi_organism_name: Undibacterium sp. Dicai25W

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Spongiisocius sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Candidatus Spongiisociales;f__Candidatus Spongiisociaceae;g__Candidatus Spongiisocius;x__unclassified Candidatus Spongiisocius;s__Candidatus Spongiisocius sp.


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Micromonospora zamorensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptomyces sp. NPDC057305

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S21

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_submitter: Colorado State University


ncbi_submitter: EPFL


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 251

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Lacombe

ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Suzhou

ncbi_organism_name: Pseudoflavonifractor sp. MSJ-37

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Microbacterium sp.


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: China: Sichuan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University


ncbi_country: USA: Ithaca

ncbi_isolation_source: Brook charr

ncbi_organism_name: Aeromonas salmonicida subsp. salmonicida

ncbi_submitter: Universite Laval


ncbi_country: Australia: Adelaide Hills; SA

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: Veterinary Research Institute


ncbi_country: United Kingdom: Melton Mowbray

ncbi_isolation_source: Metal working fluids

ncbi_organism_name: Comamonas testosteroni

ncbi_submitter: University of Lausanne


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_country: Korea: Gwangyang Province

ncbi_isolation_source: Pepper plant

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Korea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Prevotellaceae bacterium UBA7002


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Velvet assembly of Acinetobacter baumannii ABUH463346

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_organism_name: Betaproteobacteria bacterium


ncbi_country: France

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: Vaccine

ncbi_organism_name: Clostridium botulinum D/C

ncbi_submitter: Anses


ncbi_country: Japan

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Illinois


ncbi_country: USA: Florida; Cedar Key

ncbi_isolation_source: gill

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex. Lucinisca nassula)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alicyclobacillus sacchari

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: swine farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_country: Russia: Krasnoyarsk Region

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_assembly_name: IMG-taxon 2693429864 annotated assembly

ncbi_organism_name: Flavobacterium urocaniciphilum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli 8624

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Zimbabwe

ncbi_strain_identifiers: ICMP 4418

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. striafaciens


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Comenius University Science Park


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences (AMMS)


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Hellea sp.

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-1228

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Institut Pasteur de Dakar


ncbi_country: USA: Indiana

ncbi_isolation_source: swine

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Taiwan

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: Academia Sinica


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Lincoln

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Aricultural University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Methylophaga sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Germany

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Colombia: Tunja

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_submitter: URMC


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Melbourne

ncbi_isolation_source: aerobically stored lamb

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: CSIRO Agriculture and Food


ncbi_country: Netherlands

ncbi_organism_name: Leptospira interrogans serovar Icterohaemorrhagiae

ncbi_strain_identifiers: Langkawi

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Canada

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Minnesota


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Acidaminococcus intestini


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Marinovum sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: China

ncbi_isolation_source: meat

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: China Agricultural University


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Trinidad and Tobago: Trinidad

ncbi_isolation_source: patient

ncbi_submitter: University of Notre Dame

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: KU Leuven


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Brotaphodocola sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: IHMA


ncbi_organism_name: Serratia sarumanii

ncbi_submitter: University of Calgary


ncbi_submitter: West African Centre for Cell Biology of Infectious Pathogens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Virchow


ncbi_organism_name: uncultured Puniceicoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Singapore: Jurong West

ncbi_isolation_source: activated sludge

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_organism_name: Fusobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Pontiella sp.


ncbi_organism_name: Stenotrophomonas sp.


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Togo: Lome

ncbi_submitter: Universite de Lome


ncbi_isolation_source: Rheumatology Clinic

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Elizabethkingia sp. HX XZB

ncbi_strain_identifiers: HX XZB

ncbi_submitter: West China Hospital of Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;g__Elizabethkingia;x__unclassified Elizabethkingia;s__Elizabethkingia sp. HX XZB


ncbi_isolation_source: water

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: sea tidal flat

ncbi_organism_name: Pseudomaricurvus hydrocarbonicus

ncbi_submitter: Xiamen University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Bradyrhizobium symbiodeficiens


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: CDPHE SARS-CoV-2 submissions


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


gtdb_type_species_of_genus: t

ncbi_organism_name: Shiella aurantiaca

ncbi_submitter: Jiangxi Normal University


ncbi_country: Peru: Lima

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: BGI-Shenzhen


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: adult feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_country: China: Yunnan

ncbi_isolation_source: hot spring

ncbi_organism_name: Tabrizicola sp. YIM 78059

ncbi_submitter: Henan Normal University


ncbi_organism_name: Sphingobacterium sp.


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Boston

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Nan Jing

ncbi_isolation_source: Blood culture medium

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Burkina Faso: Kouba; public road

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. BF2-3

ncbi_submitter: University of Bialystok

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. BF2-3


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: Stool Specimen

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: icddr,b


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_assembly_name: MTB TB008 version 1

ncbi_country: Malaysia: Selangor

ncbi_isolation_source: cerebrospinal fluid from patient with tuberculosis

ncbi_organism_name: Mycobacterium tuberculosis PR08

ncbi_submitter: Universiti Teknologi MARA


ncbi_country: Denmark

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli KOEGE 58 (171a)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli KOEGE 58 (171a)


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shanghai

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: SAHMRI


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: Escherichia coli O7:H4

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Shigella flexneri K-227

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Costa Rica

ncbi_isolation_source: Fish tissue

ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: University of Georgia


ncbi_country: Germany

ncbi_submitter: Universite de Lyon


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. Imp1-6

ncbi_submitter: University of Texas at Austin


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Thiothrix sp. UBA2016

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oxford


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter sp.


ncbi_country: USA: Maine

ncbi_isolation_source: hospital patient

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Maine at Presque Isle


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: PROIMI


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Staphylococcus aureus W80011

ncbi_submitter: Broad Institute


ncbi_isolation_source: Cloacal swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: Turkey

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: CAU Kiel


ncbi_country: USA: Michigan

ncbi_isolation_source: University of Michigan Health System

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Michigan


ncbi_country: Canada: Quebec City

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPLOWO2_01_FULL_33_17


ncbi_organism_name: Candidatus Roseilinea sp.

ncbi_submitter: Karlsruhe Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Thermofontia;x__Candidatus Thermofonsia Clade 3;g__Candidatus Roseilinea;x__unclassified Candidatus Roseilinea;s__Candidatus Roseilinea sp.


ncbi_organism_name: Serratia liquefaciens


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Psychromonas sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: burned soil

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Lysinibacillus boronitolerans


ncbi_organism_name: Micromonospora zamorensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Vibrio campbellii

ncbi_submitter: ICAR-Central Institute of Brackishwater Aquaculture


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Enterobacter sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University of British Columbia


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Anaerolineales bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_submitter: Proteon Pharmaceuticals


ncbi_isolation_source: termite gut

ncbi_organism_name: Alistipes sp. UBA928

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Democratic Republic of the Congo: Kinshasa

ncbi_isolation_source: fecal samples

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Firmicutes bacterium UBA6155

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA6155


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: USA: California; Cedars Spring

ncbi_isolation_source: spring water

ncbi_organism_name: candidate division NPL-UPA2 bacterium

ncbi_submitter: National Institute of Advanced Industrial Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__candidate division NPL-UPA2;s__candidate division NPL-UPA2 bacterium


ncbi_organism_name: Pseudomonas sp.


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3109

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Streptococcus suis YS122

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: University of Nebraska-Lincoln

ncbi_isolation_source: whole bodies

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Nebraska-Lincoln


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae MRSN 2404

ncbi_strain_identifiers: MRSN 2404

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MRSN 2404


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Gothenburg


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Frigoribacterium sp. Leaf186

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf101

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Viet Nam

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Taiwan

ncbi_isolation_source: Taiwan

ncbi_strain_identifiers: Zapdos

ncbi_submitter: National Chung Cheng University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Brucella anthropi

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_country: USA: Boston; MA

ncbi_isolation_source: tissue

ncbi_organism_name: Staphylococcus aureus M0380

ncbi_submitter: Broad Institute


ncbi_country: Turkey

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Aarhus University


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d'Aosta


ncbi_organism_name: Enterococcus faecalis EnGen0359


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Arcobacter sp.

ncbi_submitter: Kiel University


ncbi_assembly_name: Rumen uncultured genome RUG13589

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: EMG


ncbi_country: South Korea: Daejeon City

ncbi_isolation_source: bioreactor for the treatment of nickel-complexed cyanide

ncbi_organism_name: Rhizobium daejeonense

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae SGBS022

ncbi_submitter: MD Anderson Cancer Center


ncbi_country: China: Zhangshu City; Jiangxi Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Qipengyuania citrea

ncbi_submitter: University of Southern California


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eubacterium ventriosum


ncbi_country: USA: Vermont

ncbi_isolation_source: Raw cow s milk

ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Tufts University


ncbi_isolation_source: ruminant gastrointestinal tract


ncbi_country: Russia: Rostov-on-Don

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Research Institute for Plague Control


ncbi_country: USA: Kansas

ncbi_submitter: University of Guelph


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Sphingobacterium sp. 40-24

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Tidjanibacter sp.


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Qingdao

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Shandong University


ncbi_country: Germany

ncbi_isolation_source: urine

ncbi_submitter: Swansea University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Spain

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas arboricola pv. corylina

ncbi_strain_identifiers: IVIA 3978

ncbi_submitter: INIA


ncbi_organism_name: Escherichia coli

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. 2009C-4052


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cutibacterium granulosum

ncbi_submitter: Tianjin Nankai Hospital


ncbi_organism_name: Streptomyces galilaeus

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_organism_name: Salmonella sp. SC44

ncbi_submitter: Sichuan University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Microbacterium lemovicicum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: vagina

ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing macro&micro-test Bio-Tech Co.Ltd


ncbi_assembly_name: Rumen uncultured genome RUG13404

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Israel: Evolution canyon; south-facing slope

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus swezeyi

ncbi_submitter: NCAUR-ARS-USDA


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: USA: Rochester; NY

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Klebsiella sp. JB_Kp041

ncbi_submitter: Max Rubner-Institut


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_submitter: University of Ibadan, Nigeria


ncbi_country: Belgium

ncbi_isolation_source: Feces

ncbi_organism_name: Aliarcobacter thereius

ncbi_submitter: Ghent University


ncbi_country: Tasman Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Synechococcus sp. MU1648

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Japan

ncbi_isolation_source: urine

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Sweden

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Micromonospora inaquosa


ncbi_organism_name: Aliirhizobium cellulosilyticum

ncbi_strain_identifiers: SEMIA 452

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)


ncbi_country: Bangladesh

ncbi_isolation_source: feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: enriched from a lab-scale EBPR bioreactor

ncbi_organism_name: Candidatus Accumulibacter cognatus

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter cognatus


ncbi_country: Australia: Brisbane

ncbi_isolation_source: bioreactor

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Queensland university of technology


ncbi_isolation_source: not provided

ncbi_organism_name: Hoylesella saccharolytica


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Qinghai

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Escherichia coli

ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Finland

ncbi_organism_name: Anaerostipes hadrus

ncbi_strain_identifiers: PEL 85

ncbi_submitter: Helsinki University


ncbi_organism_name: Macrococcoides bohemicum


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_country: China

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Streptomyces cinereoruber

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; MPn+N amendment

ncbi_organism_name: Acidovorax sp.

ncbi_submitter: University of Montana


ncbi_assembly_name: Rumen uncultured genome RUG231

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Microgenomates bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Candidatus Microgenomates;s__Candidatus Microgenomates bacterium


ncbi_organism_name: uncultured Bdellovibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__environmental samples;s__uncultured Candidatus Sumerlaeota bacterium


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Psychrobacter sp. PP-21

ncbi_submitter: University of Plymouth


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium 510

ncbi_submitter: Washington University


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Jiangxi Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Institute of Water Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Rhodanobacter sp.


ncbi_organism_name: Enterococcus sp. C52

ncbi_submitter: Northwest A & F University


ncbi_organism_name: Streptomyces sp. NPDC046465

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: soy bean root isolates

ncbi_organism_name: Microbispora sp. NRRL B-24597

ncbi_submitter: University of Illinois


ncbi_isolation_source: anaerobic digsetion effluent

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Kitasatospora sp. NPDC052896


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Portugal: Porto

ncbi_isolation_source: clinical isolate

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsCore2_bin-1585

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: Udder

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_submitter: INRA


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Cyanobacteria bacterium J06614_10

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06614_10


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Leifsonia sp. NPDC080035

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Japan: Tokyo

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Ureibacillus sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Vermont

ncbi_isolate: DproxSym

ncbi_isolation_source: Beetle Malpighian tubules

ncbi_organism_name: Enterobacteriaceae endosymbiont of Donacia proxima

ncbi_strain_identifiers: DproxSym

ncbi_submitter: Johannes Gutenberg University Mainz


ncbi_country: Japan: Aomori

ncbi_isolation_source: bacteriome

ncbi_organism_name: endosymbiont of Sipalinus gigas

ncbi_submitter: The Open University of Japan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Candidatus Nardonella;x__unclassified Candidatus Nardonella;s__endosymbiont of Sipalinus gigas


ncbi_country: France

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_country: Russia: Moscow

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Dolosigranulum pigrum

ncbi_submitter: Amager and Hvidovre Hospital


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0375

ncbi_submitter: Broad Institute


ncbi_organism_name: Elizabethkingia bruuniana

ncbi_submitter: Oklahoma State University


ncbi_country: USA: AR

ncbi_isolation_source: Young Chickens

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N59907F

ncbi_submitter: FDA


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Curtobacterium flaccumfaciens

ncbi_strain_identifiers: GBBC 3204

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: KS

ncbi_organism_name: Escherichia coli

ncbi_submitter: USFDA


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1106


ncbi_submitter: Meijo University faculty of pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis;x__Mycobacterium avium subsp. hominissuis TH135


ncbi_submitter: Zhejiang University


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of New South Wales


ncbi_organism_name: Zoogloea sp.

ncbi_submitter: University of Queensland


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCLR17_051

ncbi_submitter: University of California, Irvine


ncbi_assembly_name: Rumen uncultured genome RUG13474

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Eubacterium pyruvativorans

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Anaerolineales bacterium UBA3499


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_organism_name: Candidatus Thioglobus autotrophicus

ncbi_submitter: University of Washington

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;s__Candidatus Thioglobus autotrophicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;s__Candidatus Thioglobus autotrophicus


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Halifax

ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_organism_name: Pseudoalteromonas sp. BZP1

ncbi_submitter: Meyer Microbes Lab


ncbi_isolation_source: well water

ncbi_organism_name: Dethiobacter sp.

ncbi_submitter: University of Utah


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Small intestine

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Hamburg

ncbi_organism_name: Nitrosomonas sp. Nm84


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Nose anterior

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_country: USA

ncbi_isolation_source: swine facility

ncbi_strain_identifiers: ISU 960

ncbi_submitter: USDA-ARS


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_country: Turkey

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: China:Hebei; Xingtai

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_strain_identifiers: GPS36 HEBXT 2018-6

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Belgium: Ghent

ncbi_isolation_source: feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Wageningen UR


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Netherlands

ncbi_isolation_source: Systemic

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University & Research


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_isolation_source: burned soil

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Chicago


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: United Kingdom: Hope Cove; Devon

ncbi_organism_name: Nonlabens xylanidelens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: South Africa: Prince Msheyeni

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0003

ncbi_submitter: Broad Institute


ncbi_country: Mozambique: Maputo

ncbi_isolation_source: lung sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: FIOCRUZ


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Halothiobacillaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Spirosomataceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: uncultured Elusimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Janibacter terrae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Undibacterium sp. RuTC16W

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: uncultured Terracidiphilus sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA: SD

ncbi_isolation_source: soil

ncbi_organism_name: Listeria immobilis

ncbi_submitter: Cornell University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: University of Vienna


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_submitter: Institute of Antibiotics


ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Food

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii


ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Paenibacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Michigan State University


ncbi_country: Peru

ncbi_submitter: SC


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_submitter: The University of Sydney


ncbi_organism_name: Kitasatospora herbaricolor

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: fermented goods

ncbi_submitter: BGI


ncbi_country: USA: Beloit; WI

ncbi_organism_name: Pseudomonas hunanensis


ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Holophagales bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Tongji University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile DA00307

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.0 m chemocline layer of meromictic lake

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Academia Sinica


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Poland: Rudka

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Korea

ncbi_organism_name: Jongsikchunia kroppenstedtii DSM 45133

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SC


ncbi_country: France: Salin-de-Giraud

ncbi_isolation_source: saltern; microbial mat

ncbi_organism_name: Thiohalocapsa halophila

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Kiel University


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Russia

ncbi_isolation_source: tundra wetland

ncbi_organism_name: Frigoriglobus tundricola

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_isolate: metabat2_coassembly_bwa.516 MAG

ncbi_organism_name: Candidatus Blautia faecigallinarum

ncbi_strain_identifiers: metabat2_coassembly_bwa.516 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Kineosporiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: fastidious anaerobic agar

ncbi_organism_name: Roseburia intestinalis

ncbi_strain_identifiers: NB2A 31_NB


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Dorea sp. 5-2


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-252

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-252


ncbi_organism_name: Halalkalibacterium halodurans

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans


ncbi_country: Antarctica: James Ross Island

ncbi_organism_name: Corynebacterium pygosceleis

ncbi_submitter: Masaryk University


ncbi_organism_name: Candidatus Fimivivens sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivivens;x__unclassified Candidatus Fimivivens;s__Candidatus Fimivivens sp.


ncbi_organism_name: Comamonas kerstersii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: NIH


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: China: Yangzhou

ncbi_isolation_source: Pork

ncbi_submitter: Yangzhou University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Portugal: Braga

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: India: Kheda; Gujarat

ncbi_isolation_source: soil

ncbi_organism_name: Siphonobacter sp. SORGH_AS_0500

ncbi_submitter: Gujarat State Biotechnology Mission


ncbi_assembly_name: Rumen uncultured genome RUG321

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Africa: Stanger

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0019

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_assembly_name: Rumen uncultured genome RUG13100

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Denitrobacterium sp.


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Methanoregulaceae archaeon


ncbi_submitter: University of South Australia


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_submitter: China Agriculture University


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Sweden: Orebro

ncbi_isolation_source: orthopedic joint implant

ncbi_organism_name: Finegoldia magna

ncbi_submitter: Aarhus University


ncbi_organism_name: Candidatus Coproplasma avistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;s__Candidatus Coproplasma avistercoris


ncbi_organism_name: Kitasatospora aureofaciens


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli M16

ncbi_submitter: Department of Pediatrics, Washington University School of Medicine


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Xilinguole; Inner Mongolia

ncbi_isolation_source: diary product

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Arthrobacter koreensis

ncbi_submitter: Colorado State University


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Silanimonas sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA169


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. MPR-ANC1

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_isolation_source: liquor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_submitter: Naresuan University


ncbi_country: USA: MO

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Kazakhstan

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_isolation_source: Cell culture

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__aphid secondary symbionts;g__Candidatus Williamhamiltonella;s__Candidatus Williamhamiltonella defendens


ncbi_organism_name: Akkermansia massiliensis

ncbi_submitter: UIUC


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-355-K15

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa