ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: surficial creek

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: China: Beijing

ncbi_genome_representation: full

ncbi_isolation_source: ceacal content

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Chinese Academy of Science


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_organism_name: Desulfofustis sp.

ncbi_submitter: Georgia Tech


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from dieased colony 6

ncbi_organism_name: Carboxylicivirga sp.

ncbi_submitter: University of Florida


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_level: Complete Genome

ncbi_country: Pakistan: Punjab

ncbi_isolation_source: sugarcane rhizosphere

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: Universite de Moncton


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Microbacterium sp. MYb32

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 24 year old woman who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: McMaster University


ncbi_country: USA

ncbi_organism_name: Segatella baroniae B14

ncbi_submitter: University of Ljubljana


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Mycoplasmopsis citelli

ncbi_refseq_category: reference genome

ncbi_submitter: SC

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Australia

ncbi_isolation_source: Chardonnay

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Brazil: Cruz das Almas; Bahia State

ncbi_organism_name: Candidatus Cardinium hertigii

ncbi_submitter: International Brevipalpus Genome Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Amoebophilaceae;g__Candidatus Cardinium;s__Candidatus Cardinium hertigii


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Perirectal

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Oxford


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Candidatus Acididesulfobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acididesulfobacter;x__unclassified Candidatus Acididesulfobacter;s__Candidatus Acididesulfobacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus M1072

ncbi_submitter: Broad Institute


ncbi_isolation_source: peritoneal fluid

ncbi_submitter: NIH Intramural Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae KPNIH4


ncbi_submitter: Ulsan National Institute of Science and Technology


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_country: France: Champenoux

ncbi_isolation_source: forest

ncbi_organism_name: Serratia silvae

ncbi_submitter: University Reims Champagne Ardennes UMR FARE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Philippines

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_isolation_source: Caecum


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Ethiopia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Public Health and the Environment (RIVM)


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus sp. IG2

ncbi_submitter: faculty of sciences of sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. IG2


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Chile: Temuco

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Enterococcus faecalis EnGen0340


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas coronafaciens pv. oryzae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. oryzae


ncbi_country: China: Shanghai

ncbi_submitter: Fudan University


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Leicester


ncbi_assembly_level: Chromosome

ncbi_assembly_name: R-75593 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Intestinimonas sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Intestinimonas;x__environmental samples;s__uncultured Intestinimonas sp.


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Desulfosporosinus sp. UBA5179

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Vagococcus salmoninarum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Salmonella sp. SAL00665

ncbi_submitter: Zhejiang university


ncbi_organism_name: Stenotrophobium sp.

ncbi_submitter: Monash University


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Nocardiopsis dassonvillei

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Shewanella sp. S23-S33

ncbi_submitter: McGill University


ncbi_organism_name: Allopontixanthobacter sediminis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Chthoniobacter sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Khyber Medical University, peshawar, KPK, Pakistan


ncbi_organism_name: Escherichia coli

ncbi_submitter: Univeristy of South Australia


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of California Berkeley


ncbi_country: Spain: Loriguilla Reservoir; Valencia

ncbi_isolation_source: freshwater biome

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Italy: Campania

ncbi_isolation_source: CSF

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_organism_name: Escherichia coli KTE187

ncbi_submitter: Broad Institute


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Portugal: Praia da Memoria

ncbi_isolation_source: marine sponge

ncbi_organism_name: Vibrio sp. OPT41

ncbi_submitter: Interdisciplinary Centre of Marine and Environmental Research


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Arachnia propionica F0230a

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Finland: Helsinki

ncbi_isolation_source: rye sourdough

ncbi_organism_name: Limosilactobacillus frumenti

ncbi_submitter: University of Alberta


ncbi_country: China: Tibet

ncbi_isolation_source: lung

ncbi_submitter: Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capripneumoniae


ncbi_assembly_name: Unicycler

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Mahidol University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Tardiphaga sp. 862_B3_N1_1

ncbi_submitter: VIB


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sichuanensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: TX

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Thauera sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: USA

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Cepheid


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Seoul National University


ncbi_isolation_source: Columbia River plume; salinty 25

ncbi_organism_name: Thermus thermophilus

ncbi_submitter: University of Queensland


ncbi_organism_name: Rhodococcus sp. SJ

ncbi_strain_identifiers: SJ

ncbi_submitter: Zhejiang Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. SJ


gtdb_type_species_of_genus: t

ncbi_isolation_source: soda solonchak soil

ncbi_organism_name: Natronosporangium hydrolyticum

ncbi_submitter: Leibniz Institute DSMZ


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: New England Biolabs, Inc.


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Bacteroidetes bacterium SB0668_bin_1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium SB0668_bin_1


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Leyella stercorea

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 12S00040

ncbi_submitter: Broad Institute


ncbi_genome_category: derived from single cell

ncbi_strain_identifiers: SCGC AAA255-P19

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;f__Candidatus Paceibacteraceae;g__Candidatus Paceibacter;s__Candidatus Paceibacter normanii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;f__Candidatus Paceibacteraceae;g__Candidatus Paceibacter;s__Candidatus Paceibacter normanii;x__Candidatus Paceibacter normanii SCGC AAA255-P19


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: EMG


ncbi_organism_name: Peptoniphilus gorbachii


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_country: Zimbabwe

ncbi_organism_name: Brucella abortus F1/06-B21


ncbi_country: Finland: Lake Saimaa

ncbi_isolation_source: lice collected 2009 through 2017 from Pusa hispida saimensis

ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: USA: CT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nitrospira sp. SB0677_bin_15

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: China: 69 Yongding Road; Haidian District; Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Medical University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Ruminiclostridium sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Morbihan

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Anses


ncbi_organism_name: Brevibacterium sp. 239c

ncbi_submitter: INRA GRIGNON


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom:London

ncbi_submitter: The Wellcome Trust Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus TW20


ncbi_organism_name: Bacillus sp. JJ1609

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JJ1609


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia

ncbi_isolation_source: Rectum of horse with oligofructose-induced equine laminitis

ncbi_organism_name: Streptococcus caballi DSM 19004

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: blood sample from a newborn

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Hunter College of City University of New York


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: China: WuHan

ncbi_isolation_source: wholesale market

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Acidaminobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Escherichia coli

ncbi_submitter: King Abdulaziz University


ncbi_submitter: Chirstian Medical College


ncbi_country: China: Kunming

ncbi_isolation_source: sediment of lake

ncbi_organism_name: Massilia sp. YIM B02763

ncbi_strain_identifiers: YIIM B02763

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Oxalobacteraceae;x__Telluria group;g__Massilia;x__unclassified Massilia;s__Massilia sp. YIM B02763


ncbi_country: USA: Georgia

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: USDA-ARS


ncbi_country: USA: Looe Key National Marine Sanctuary; Florida

ncbi_isolation_source: coral mucus

ncbi_organism_name: Roseivirga sp. UBA6061

ncbi_submitter: University of Queensland


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Entomomonas moraniae

ncbi_submitter: China Agricultural University


ncbi_country: USA

ncbi_isolation_source: patient

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: Pacific Ocean

ncbi_isolation_source: marine sediment 2-8 meters below seafloor

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Delaware


ncbi_organism_name: Candidatus Methanoperedens sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Archaea;x__Methanobacteriati;p__Methanobacteriota;x__Stenosarchaea group;c__Methanomicrobia;o__Methanosarcinales;x__ANME-2 cluster;f__Candidatus Methanoperedentaceae;g__Candidatus Methanoperedens;x__unclassified Candidatus Methanoperedens;s__Candidatus Methanoperedens sp.


ncbi_isolation_source: Air filter

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Methylophaga sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_country: Argentina

ncbi_isolation_source: Osteomyelitis

ncbi_organism_name: Staphylococcus aureus DAR3156

ncbi_submitter: Broad Institute


ncbi_organism_name: Curtobacterium sp. 24E2

ncbi_submitter: Connecticut Agricultural Experiment Station


ncbi_isolation_source: cow (Bos taurus)

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:H11;x__Escherichia coli O111:H11 str. CFSAN001630


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Aalborg University


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_J_3

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Southampton


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Pontimonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Paraburkholderia dipogonis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Coriobacteriales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antwerp


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Aeromonas bivalvium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil

ncbi_organism_name: Flavihumibacter soli

ncbi_submitter: chungang university


ncbi_assembly_name: Rumen uncultured genome RUG13143

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-6 day 513

ncbi_organism_name: Candidatus Atribacteria bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Nonomuraea sp. NPDC001023

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aggeu Magalhaes Institute


ncbi_country: Germany: Regensburg

ncbi_isolation_source: perianal skin [UBERON:0012336]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture


ncbi_country: Canada: Montreal

ncbi_isolation_source: Hospital sink

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Klebsiella sp. GB_Kp051

ncbi_submitter: Max Rubner-Institut


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Ardenticatenales bacterium

ncbi_submitter: University of Gothenburg


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: IMG-taxon 2690315654 annotated assembly

ncbi_country: USA: Harvard Forest; Massachusetts

ncbi_organism_name: Terriglobus roseus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG11730

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ligilactobacillus agilis

ncbi_strain_identifiers: LDTM 47

ncbi_submitter: Chung-Ang University


ncbi_country: Kenya

ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: France


ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_country: Nigeria: Sokkoto State;Ilella

ncbi_isolation_source: ant gut

ncbi_organism_name: Mixta sp.

ncbi_submitter: University of Jos


ncbi_assembly_name: Rumen uncultured genome RUG10151

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Pseudobdellovibrio sp. HCB154

ncbi_submitter: Instituto Politecnico Nacional


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Mexico: Los Tuxtlas

ncbi_isolation_source: nitrogen fixing nodule recovered from rainforest acidic soil

ncbi_organism_name: Rhizobium sp. Pop5

ncbi_submitter: Center for Genomic Sciences


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut

ncbi_organism_name: Dorea longicatena

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Microcoleus sp. F10-D1

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus


ncbi_country: Spain: Alicante

ncbi_isolation_source: 5.0 micron fraction from Freshwater Reservoir Amadorio

ncbi_organism_name: Burkholderiales bacterium UBA4615

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Candidatus Fonsibacter sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;x__unclassified Candidatus Fonsibacter;s__Candidatus Fonsibacter sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium GW2011_GWA2_42_16


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kyung Hee University


ncbi_country: South Korea: Gangwon-do

ncbi_isolation_source: Agricultural water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Korea University Graduate School


ncbi_organism_name: Enterobacter sp.

ncbi_submitter: Guangxi University


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Streptomyces sp. NPDC058255


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_isolate: AOP15_B1_surf _bin _1

ncbi_organism_name: Pseudomonas helleri

ncbi_strain_identifiers: AOP15_B1_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Streptomyces sp. NPDC020299


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes putredinis


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver; BC

ncbi_isolation_source: blood

ncbi_organism_name: Eisenbergiella tayi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Senegal: Africa

ncbi_submitter: WUGSC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis;x__Salmonella enterica subsp. enterica serovar Infantis str. SARB27


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: China

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Pontibacillus;s__Pontibacillus halophilus;x__Pontibacillus halophilus JSM 076056 = DSM 19796


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Brazil

ncbi_isolation_source: cowpea nodules from Atlantic Forest Region of Brazil

ncbi_organism_name: Bradyrhizobium pachyrhizi

ncbi_submitter: Embrapa Agrobiologia


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_country: Israel

ncbi_organism_name: Nostoc linckia z3

ncbi_submitter: The University of Hong Kong


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: RIKEN-BRC


ncbi_country: Reunion

ncbi_isolation_source: Citrus leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: cirad

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: plant

ncbi_organism_name: Lactobacillus sp. D1501

ncbi_submitter: nanjing agricultural university


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: France

ncbi_isolation_source: Cecum

ncbi_organism_name: Lachnospiraceae bacterium MD335

ncbi_submitter: Bioaster


ncbi_organism_name: Sporichthya brevicatena

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: CA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Canada: Manitoba

ncbi_isolation_source: Animal - Chicken-Cecum

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20094682


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Limosilactobacillus agrestis

ncbi_submitter: University of Alberta


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Antecubital fossa Swab

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Brazil: Recife

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_organism_name: Yersinia vastinensis

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Czech Republic: Ostrava

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter higginsii

ncbi_submitter: UNIVERSIDAD NACIONAL AUTONOMA DE MEXICO-CCG


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: India

ncbi_organism_name: Chryseobacterium arthrosphaerae

ncbi_submitter: Korea University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_submitter: JCVI


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. 2011C-3679


ncbi_organism_name: Vibrio sp. CDRSL-10 TSBA

ncbi_strain_identifiers: CDRSL-10 TSBA

ncbi_submitter: CSIR-IMTECH


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium GW2011_GWC2_37_14


ncbi_country: Germany

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z

ncbi_organism_name: Desulfobulbus propionicus

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Colombia: Duitama

ncbi_isolation_source: non-complicated Urinary tract infection-ER

ncbi_organism_name: Escherichia coli

ncbi_submitter: Clinical Epidemiology from Colombia Research Group (GRECO-UPTC)


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: China: Guangzhou city

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chinese Academy of Fishery Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium acidiphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Polaromonas sp. YR568

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Agharkar Research Institute


ncbi_organism_name: Arthrobacter sp. UYEF13

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Pseudanabaena sp. M53BS1SP1A06MG

ncbi_submitter: Universite de Montreal


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: China: Chongqing

ncbi_isolation_source: Pit Mud

ncbi_organism_name: Clostridium sp. 'White wine YQ'

ncbi_strain_identifiers: White wine YQ

ncbi_submitter: ChongQing Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;x__unclassified Clostridium;s__Clostridium sp. 'White wine YQ'


ncbi_organism_name: Serratia marcescens

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Cardiff University


ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: feces

ncbi_submitter: Sichuan University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Caldisericales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_country: Brazil

ncbi_isolation_source: kidney

ncbi_organism_name: Francisella orientalis

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: Chile

ncbi_isolation_source: dried cured ham

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Planktomarina sp.

ncbi_submitter: Clemson University


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Teagasc


ncbi_organism_name: Pseudescherichia sp.


ncbi_country: USA: Massachusetts

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: CDC


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Noviherbaspirillum sp.

ncbi_submitter: Zhejiang University


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL020182

ncbi_submitter: Broad Institute


ncbi_organism_name: bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Solibacillus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Germany: Zoo Saarbruecken

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Intestinimonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces roseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Xiamen Medical College


ncbi_organism_name: uncultured Succinatimonas sp.

ncbi_submitter: EMG


ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Cutibacterium sp. V947

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolate: metabat2_coassembly_bwa.378 MAG

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.378 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured archaeon


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus H81898

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_country: South Korea: Jeonju

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Korea Centers for Disease Control and Prevention


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_submitter: University of Gothenburg


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp1 AA113

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp1 AA113

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Ireland

ncbi_organism_name: Segatella copri

ncbi_submitter: University College Cork


ncbi_organism_name: Pseudoflavonifractor capillosus

ncbi_submitter: Veterinary Research Institute


ncbi_country: South Korea

ncbi_organism_name: Parabacteroides sp. AT13

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Sudan

ncbi_isolation_source: Pus from malignancy

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: King Abdulaziz University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CDC


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Liaoning

ncbi_submitter: China Agricultural University


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Mexico: Morelos; Cuernavaca

ncbi_isolation_source: Laboratory sink

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Israel: Eilat

ncbi_isolation_source: sponge

ncbi_organism_name: Microbulbifer spongiae

ncbi_strain_identifiers: MI-G

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: USA: PA

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Czech Republic

ncbi_isolation_source: colon

ncbi_organism_name: Campylobacter jejuni


ncbi_country: USA

ncbi_isolation_source: Chicken carcass

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Seoul National University


ncbi_country: Bangladesh

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolate: Bosea sp. 62

ncbi_organism_name: Bosea sp. 62

ncbi_strain_identifiers: Bosea sp. 62

ncbi_submitter: Elham Karimi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. 62


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 112

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: SNUC 614

ncbi_submitter: University of Calgary


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolate: Bosea sp. 21B

ncbi_organism_name: Bosea sp. 21B

ncbi_strain_identifiers: Bosea sp. 21B

ncbi_submitter: Station Biologique de Roscoff - Sorbonne Universite/CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. 21B


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: Panama: Boco del Toro

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Okeania sp. SIO1H4

ncbi_submitter: UCSD


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Psychromonas sp.


ncbi_country: USA: NY

ncbi_isolation_source: arm

ncbi_organism_name: Wohlfahrtiimonas chitiniclastica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Japan: Tottori; Daisen

ncbi_isolation_source: soil

ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: Okayama University of Science


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Zhumadian

ncbi_organism_name: Streptomyces triticagri

ncbi_submitter: School of life science


ncbi_organism_name: uncultured Ilumatobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0079

ncbi_submitter: Broad Institute


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Pontixanthobacter luteolus

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_country: South Korea: Daejeon

ncbi_organism_name: Chitinophaga sp. HK235

ncbi_submitter: Korea research institute of chemical technology


ncbi_assembly_name: Rumen uncultured genome RUG11319

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UCSI University


ncbi_isolation_source: Wound Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Galway


ncbi_organism_name: Castellaniella ginsengisoli

ncbi_submitter: The University of Georgia


ncbi_isolation_source: low methane producing sheep

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA3723


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Francisellaceae bacterium UBA7831


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Chulalongkorn University


ncbi_submitter: University Hospital Duesseldorf


ncbi_country: China

ncbi_isolation_source: root

ncbi_organism_name: Janibacter endophyticus

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: San Mateo; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of California, Berkeley


ncbi_assembly_name: Rumen uncultured genome RUG14421

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces aureus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_isolate: AOP30_B1_surf _bin _8

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP30_B1_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Undibacterium sp. JH2W

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lentimicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Salmonella sp. NW372

ncbi_submitter: Sichuan University


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Cadiz


ncbi_organism_name: Ancrocorticia sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Hafnia paralvei

ncbi_submitter: Instituto de Productos Lacteos de Asturias (IPLA-CSIC)


ncbi_organism_name: Streptomyces sp. NPDC014773

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Selenomonas montiformis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin71

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MSU bin71

ncbi_submitter: Monash University


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: VHProbi R03

ncbi_submitter: Nutrition &Health Technology Center


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_country: USA: New York City

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_isolate: Faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Municipal Center for Disease Control & Prevention


ncbi_country: USA: New York

ncbi_isolation_source: Urine from long term care facility

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: marine

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: University of Queensland


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: respiratory


ncbi_country: USA: Memphis

ncbi_organism_name: Bacillus cereus

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_organism_name: Escherichia coli 042

ncbi_submitter: Wellcome Trust Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O44:H18;x__Escherichia coli 042


ncbi_country: Brazil

ncbi_isolation_source: Raw Chicken Sausage

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Alloprevotella tannerae


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: Russia: Khabarovsk region

ncbi_isolation_source: Salad with tomato; cucumber and dressing

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Dorea sp. AF24-7LB

ncbi_submitter: BGI


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Mobiluncus sp.


ncbi_country: Iran

ncbi_organism_name: Mycobacterium tuberculosis NRITLD13

ncbi_submitter: Broad Institute


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_submitter: Center for Microbial Communities


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: sputum of patient with tuberculosis-like disease

ncbi_organism_name: Mycobacterium shimoidei

ncbi_submitter: Uppsala University


ncbi_country: Tanzania: Dar es Salaam

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bergen


ncbi_country: Germany: Jena

ncbi_isolation_source: Patient sample

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: CHI: Chlamydien-Wirtszell-Interaktion


ncbi_country: China: Beijing

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: USA: California

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia albertii

ncbi_submitter: USDA, ARS, WRRC


ncbi_submitter: Renji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Candidatus Thiothrix putei

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Terrisporobacter petrolearius

ncbi_submitter: EPFL


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: South Korea: Ungok Wetland of Gochang

ncbi_isolation_source: wetland freshwater

ncbi_organism_name: Niveibacterium umoris

ncbi_submitter: Korea university


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 1110701127


ncbi_country: South Korea

ncbi_isolation_source: Freashwater sediment

ncbi_organism_name: Flavobacterium sp. N2038

ncbi_submitter: Jeju National University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Taipei Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile R20291

ncbi_submitter: Tokyo Medical And Dental University


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Farm environmental

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Marine (Black Sea)

ncbi_organism_name: Synechococcus sp. BS56D

ncbi_submitter: National Research Council (CNR)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Health Agency


ncbi_country: USA

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: China: Zhanjiang

ncbi_isolation_source: cold noodles in sauce samples

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Grimontia marina

ncbi_submitter: Nanjing Agriculture University


ncbi_country: South Korea: Changwon

ncbi_isolation_source: human skin swab

ncbi_organism_name: Haematobacter massiliensis

ncbi_submitter: Changwon National University


ncbi_organism_name: uncultured Ketobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Caldimonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Vibrio kanaloae

ncbi_submitter: University of Vienna


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC006267

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: INRA


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: beijing


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: SRCAMB


ncbi_organism_name: Bradyrhizobium sp. A11

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Gaiellaceae bacterium


ncbi_organism_name: Gardnerella swidsinskii

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Northeastern University


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: University of Oxford


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Thermotogaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Oak Ridge; TN

ncbi_organism_name: Pseudomonas sp. MPR-R2A6

ncbi_submitter: Arkin Lab


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universidad de los Andes


ncbi_isolation_source: Commercial cheese starter culture

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil: Sao Paulo; Santos

ncbi_isolation_source: Sewer

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: OR

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Bai Ma sown mountain

ncbi_isolation_source: soil

ncbi_organism_name: Fictibacillus sp. WQ 8-8

ncbi_submitter: YUNNAN UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Fictibacillaceae;g__Fictibacillus;x__unclassified Fictibacillus;s__Fictibacillus sp. WQ 8-8


ncbi_country: China

ncbi_isolation_source: marine sediments

ncbi_organism_name: Algoriphagus sediminis


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Abuja


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Kineosporiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho university


ncbi_organism_name: Aeromonas sp. R2-1

ncbi_submitter: Hangzhou CDC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_country: China: Hainan

ncbi_isolation_source: marine

ncbi_organism_name: Saccharopolyspora galaxeae

ncbi_submitter: Hainan University


ncbi_country: USA

ncbi_submitter: Broad Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: cheese starter

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Technical University of Munich


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Australia: Victoria

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: CSIRO


ncbi_country: France: Brittany

ncbi_isolation_source: water

ncbi_organism_name: Alteromonas sp. LOR

ncbi_strain_identifiers: LOR

ncbi_submitter: Bar Ilan university


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_country: Uruguay

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Reyranella sp. CPCC 100927

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-377

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_strain_identifiers: new MAG-377

ncbi_submitter: Micoorganism


ncbi_organism_name: Cellulomonas flavigena DSM 20109

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: environment

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Herbaspirillum sp.

ncbi_submitter: Kiel University


ncbi_isolation_source: Sediment of karst cave frome Guilin

ncbi_organism_name: Bradyrhizobium sp. LHD-71

ncbi_submitter: College of life sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_submitter: Sapienza University of Rome


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Drag swab

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Sao Paulo


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: USA: MN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Netherlands

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Flavobacterium ammonificans

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: France: Nantes

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_country: China: Zhengzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: YangZhou university


ncbi_country: New Zealand

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_organism_name: Promineifilum sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Promineifilum;x__unclassified Candidatus Promineifilum;s__Promineifilum sp.


ncbi_isolation_source: ocean water

ncbi_organism_name: Prochlorococcus marinus str. MIT 1327

ncbi_submitter: MIT

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Prochlorococcaceae;g__Prochlorococcus;s__Prochlorococcus marinus;x__Prochlorococcus marinus str. MIT 1327


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: pig gut metagenome


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: household water source

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Bubeng; provine Yunnan

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: PANESsp

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Nagoya University


ncbi_organism_name: Burkholderia contaminans

ncbi_strain_identifiers: CAMPA 1517

ncbi_submitter: Universidad Nacional de La Plata


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- KT_bin-0767

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Actinomadura citrea

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: Rumen uncultured genome RUG14074

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: cervical secretion

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Rathayibacter rathayi

ncbi_strain_identifiers: ICMP 2572

ncbi_submitter: Oregon State University


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: addis ababa university


ncbi_country: Malaysia

ncbi_isolation_source: eye swab

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Washington


ncbi_organism_name: Duncaniella muris


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-686-O05

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_organism_name: Stygiobacter sp. RIFOXYC2_FULL_38_25

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: United Kingdom

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: Corroded Artesian Bore

ncbi_organism_name: Hyphomicrobium sp. CS1BSMeth3

ncbi_submitter: Griffith University


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tsinghua University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Xylanibacter rodentium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella sp. NW246

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: Temple University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: uncultured Methylomirabilota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__environmental samples;s__uncultured Methylomirabilota bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_isolate: AOP4_A1_surf _bin _3

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: AOP4_A1_surf _bin _3

ncbi_submitter: Genoscope


ncbi_organism_name: Nocardia sp. NPDC003275

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_organism_name: Streptomyces bottropensis


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: Yangzhou University


ncbi_organism_name: Halobacteriovorax sp. RT-2-6

ncbi_submitter: Shandong University at Weihai


ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research