ncbi_country: China: Anhui; Tongling

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Bacillus sp. RC55

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RC55


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


gtdb_representative: t

ncbi_organism_name: Micrococcus flavus

ncbi_refseq_category: reference genome

ncbi_type_material_designation: assembly from type material


ncbi_country: Norway

ncbi_isolation_source: Atlantic Mackerel

ncbi_organism_name: Shewanella baltica

ncbi_submitter: Institute of Marine Research


ncbi_country: China: South Taiwan

ncbi_isolation_source: fresh water

ncbi_organism_name: Luteimonas aquatica

ncbi_submitter: Shandong University


ncbi_organism_name: Streptomyces sp. NBC_00075

ncbi_submitter: Technical University of Denmark


ncbi_country: Brazil: Canaa dos Carajas

ncbi_isolation_source: water

ncbi_organism_name: Candidatus Colwellbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;x__unclassified Candidatus Colwellbacteria;s__Candidatus Colwellbacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: South Africa: North West Province

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Agriculture research council


ncbi_country: Canada: Prince Edward Island

ncbi_isolation_source: Imported/domestic retail Mussels

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_assembly_name: Rumen uncultured genome hRUG884

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Lacticaseibacillus paracasei subsp. paracasei

ncbi_submitter: University of Ulsan/Asan medical center


ncbi_country: China: Guangdong

ncbi_isolation_source: Clinical Microbiology Laboratory

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangdong Provincial People's Hospital


ncbi_country: USA: DE

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2651870123 annotated assembly

ncbi_organism_name: Arachidicoccus rhizosphaerae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 390

ncbi_submitter: SC


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Mediterraneibacter gnavus CC55_001C

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_organism_name: Clostridium tertium

ncbi_submitter: Icahn School of Medicine


ncbi_country: South Korea: Gyeongnam

ncbi_isolation_source: stool

ncbi_submitter: Korea Centers for Disease Control & Prevention (KCDC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Patiriisocius hiemis

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: Malaysia: Selangor

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: University Putra Malysia


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Tokyo Medical and Dental University


ncbi_country: India: Jetpur; Gujarat

ncbi_isolation_source: Textile industry effluent

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: AIMST University


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Paenibacillus albilobatus

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_submitter: Universiti Sains Malaysia


ncbi_country: USA: Oregon

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Malaysia

ncbi_organism_name: Leptospira yasudae

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: uncultured Enterocloster sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Korea: Gyeongsang

ncbi_isolation_source: cloaca

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Chung-Ang University


ncbi_country: Colombia: Bucaramanga

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: Pakistan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cardiff University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_country: Pacific Ocean: Okinawa through

ncbi_organism_name: Methylococcaceae bacterium HT5

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolate: HCA1 bin25

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: HCA1 bin25

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: IMG-taxon 2599185260 annotated assembly

ncbi_organism_name: Legionella israelensis DSM 19235

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_submitter: BIOTEC


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: China: Heilongjiang

ncbi_submitter: South China Agricultural University


ncbi_country: China: Zhejiang

ncbi_isolation_source: retail chicken

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Leptospiraceae bacterium UBA7801

ncbi_submitter: University of Queensland


ncbi_country: China: Hangzhou

ncbi_isolation_source: bloodstream

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Bacteroidales bacterium UBA1751

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1751


ncbi_organism_name: Enterococcus timonensis

ncbi_submitter: URMITE


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: secretion

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Prevotella pallens

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Guangxi Institute of Fisheries


ncbi_country: Portugal

ncbi_organism_name: Mycobacterium paragordonae

ncbi_submitter: Centre for Functional Diversity


ncbi_organism_name: Bellilinea sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG13424

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Megasphaera sp.


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Meleagridis


ncbi_country: Colombia: Antioquia

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium UBA2933

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2933


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab cheek

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Nanjing Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Pedobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Exiguobacterium oxidotolerans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium oxidotolerans


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: UIUC


ncbi_submitter: Academy of Military Medical Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Qingdao Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Chlorobaculum sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Paludibacter sp.

ncbi_submitter: University of British Columbia


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay warer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: South Korea

ncbi_isolation_source: Korean fermented food

ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: Korea Food Research Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Hungatella sp.


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: USDA-ARS


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Faeces


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Cyanide and thiocyanate bioreactor

ncbi_organism_name: Acidovorax sp. SCN 68-22

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Germany: Volcanic Eifel; Andernach

ncbi_isolation_source: groundwater from cold water geyser; filtered on 0.1um pore size filters

ncbi_submitter: University Duisburg-Essen


ncbi_assembly_name: Rumen uncultured genome RUG10954

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Uniwersytet Warminsko-Mazurski w Olsztynie


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guigang City; Guangxi Province

ncbi_isolation_source: stool

ncbi_submitter: SCAU


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_organism_name: Rhodococcus sp. UFZ-B548

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. UFZ-B548


ncbi_country: Taiwan

ncbi_isolation_source: bloodstream

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: China: Ningbo

ncbi_isolation_source: mudflats

ncbi_organism_name: Streptomyces sp. 2P-4

ncbi_submitter: Zhejiang Pharmaceutical University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Denmark: Region Zealand

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus oralis subsp. dentisani

ncbi_submitter: Slagelse Hospital


ncbi_country: Canada: Montreal; QC

ncbi_isolation_source: Neck/Axilla

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_organism_name: Prochlorothrix sp.

ncbi_submitter: CSIR-Centre for Cellular and Molecular Biology


ncbi_organism_name: Nodosilinea sp.


ncbi_country: Brazil: Cave Furna do Fim do Morro do Parafuso; Paripiranga; Bahia

ncbi_isolation_source: dripping water of limestone cave

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universidade Estadual de Santa Cruz


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Mycobacterium leprae


ncbi_organism_name: Escherichia coli

ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_country: India

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: gentamicin fermentation residues

ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: CAAS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea:Sunchang

ncbi_isolation_source: Cheonggukjang

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. VRA16 Mangrove soil

ncbi_strain_identifiers: VRA16 Mangrove soil

ncbi_submitter: UNIVERSITY OF NORTH BENGAL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__unclassified Streptomyces;s__Streptomyces sp. VRA16 Mangrove soil


ncbi_country: Belarus: Mogilev

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: Northumbria University


ncbi_country: South Africa: Tau Tona mine in Carletonville district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Anaerolinea thermophila

ncbi_submitter: University Duisburg-Essen


ncbi_country: USA

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UC San Diego


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Enterococcus faecalis EnGen0090

ncbi_submitter: Broad Institute


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1168S


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Lebanon

ncbi_organism_name: Brucella sp. CMUL 018

ncbi_strain_identifiers: CMUL 018

ncbi_submitter: LAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;x__unclassified Brucella;s__Brucella sp. CMUL 018


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: water

ncbi_organism_name: Thiomicrospira cyclica ALM1

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin3

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_strain_identifiers: LAG bin3

ncbi_submitter: Monash University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_isolation_source: Chicken meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ligilactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_assembly_name: freshwater MAG --- E5_bin-113

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Chitinophagia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AK

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA3507

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA3507


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Neomicrothrix sp. UBA7828

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA7828


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei TSV 43

ncbi_strain_identifiers: TSV 43

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__environmental samples;s__uncultured Latescibacterota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology


ncbi_country: Russia

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Australia: Sydney; Freshwater Beach

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Synechococcus sp. HB1133

ncbi_submitter: Macquarie University


ncbi_assembly_name: IMG-taxon 2671180227 annotated assembly

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: nose

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG369

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Neoaquamicrobium sediminum

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Agrobacterium sp. 719_389

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Streptomyces sp. NBC_00210

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Adeleke University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Shanghai Municipal Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rissen


ncbi_organism_name: Streptomyces tricolor

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Allorhizocola sp.

ncbi_submitter: University of California Davis


ncbi_country: Cameroon: Northern Cameroon

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_assembly_name: Rumen uncultured genome RUG13108

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Desulfovibrio desulfuricans

ncbi_submitter: University of Chicago


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Chongqing

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_country: Argentina: San Juan

ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis CNGB 1076

ncbi_strain_identifiers: CNGB 1076


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Spain

ncbi_isolation_source: scallop

ncbi_organism_name: Phaeobacter gallaeciensis DSM 26640

ncbi_submitter: DSMZ


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Escherichia coli CVM N34054PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N34054PS

ncbi_submitter: FDA


ncbi_country: China: Henan

ncbi_submitter: China Agricultural University


ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Missouri

ncbi_isolation_source: soil from timothy field

ncbi_organism_name: Kitasatospora aureofaciens

ncbi_strain_identifiers: NRRL B-2657

ncbi_submitter: University of Illinois


ncbi_country: Madagascar

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Methylobacterium brachiatum

ncbi_submitter: Northwest Missouri State University


ncbi_organism_name: Knoellia pratensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Taiwan

ncbi_isolation_source: spring water

ncbi_organism_name: Chromobacterium aquaticum

ncbi_submitter: NCAUR-ARS-USDA


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Hunan

ncbi_isolation_source: sputum

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: Germany: Berlin

ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: Institute for Microbiology and Epizootics, Freie University Berlin


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Alkalinema sp. FACHB-956

ncbi_submitter: South China Normal University


ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri 2005AH264

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Ecuador: Quito

ncbi_isolation_source: osteomyelitis aspirate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South American MRSA Consortium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: Minnesota

ncbi_isolation_source: Attic structure in St. Paul; MN

ncbi_organism_name: Wolbachia pipientis

ncbi_submitter: University of Minnesota


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: INRA


ncbi_country: Italy: Perugia

ncbi_isolation_source: throat swab

ncbi_submitter: University of Camerino


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_country: South Korea: Gimje

ncbi_isolation_source: Potato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: National Institute of Agricultural Sciences, RDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_isolation_source: human stool

ncbi_organism_name: Lactobacillaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Mozambique

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4000

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Broad Institute


ncbi_organism_name: Segatella salivae


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 43

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Zhoushan island; Zhejiang

ncbi_isolation_source: sterile tools

ncbi_organism_name: Croceicoccus naphthovorans

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridium sp. HMSC19A10

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Dialister invisus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Antarctica: South Shetland Islands; Midge Lake

ncbi_organism_name: Synechococcus sp. CS-1327

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: Klebsiella pneumoniae

ncbi_isolation_source: Human

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Klebsiella pneumoniae

ncbi_submitter: Instituto de Salud Carlos III


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Proximal colon


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Tang lab


ncbi_country: China: Shanghai

ncbi_isolation_source: patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Municipal Center for Disease Control and Prevention


ncbi_country: USA: TX

ncbi_isolation_source: soil

ncbi_organism_name: Francisella sp. TX07-6608

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Caecum


ncbi_country: Germany

ncbi_organism_name: Bifidobacterium boum

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Slaughterhouse

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Japan

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Desemzia sp. FAM 23991

ncbi_submitter: Agroscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Desemzia;x__unclassified Desemzia;s__Desemzia sp. FAM 23991


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Cronobacter muytjensii 530

ncbi_submitter: LifeTech


ncbi_organism_name: Lawsonibacter sp.


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Spirochaetota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp18 AA62

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp18 AA62

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Escherichia coli

ncbi_submitter: Julian Sommer


ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Tabrizicola sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada

ncbi_isolation_source: Feedlot Water bowl

ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: Western College of Veterinary Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Candidatus Cloacimonadota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Oligoflexales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Pacific Ocean

ncbi_isolation_source: basaltic crustal fluids

ncbi_organism_name: Pseudomonas sp. JdFR-91

ncbi_submitter: University of Hawaii


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Golm

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas sp. Root329

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_isolation_source: host sputum

ncbi_organism_name: Chlamydia pneumoniae

ncbi_submitter: University of Vienna


ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Yonsei University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Guangzhou

ncbi_isolation_source: power plant biotrickling filter

ncbi_organism_name: Chelatococcus daeguensis

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Belgium

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: LHUB-ULB


ncbi_country: Sweden: Umea

ncbi_isolation_source: biopsy from the small intestine of a child with coeliac disease

ncbi_organism_name: Lachnoanaerobaculum umeaense

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Beduini sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Salmonella sp. M206


ncbi_organism_name: Pediococcus pentosaceus

ncbi_strain_identifiers: VHProbi M59

ncbi_submitter: Nutrition &Health Technology Center


ncbi_organism_name: Mycobacterium sp. pV006

ncbi_submitter: Engelhardt Institute of Molecular Biology RAS


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: Streptococcus acidominimus


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. AFS001701

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS001701


ncbi_organism_name: Brevibacillus laterosporus


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Faecalibacterium taiwanense

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_country: USA

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: Fermented Fish

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Agro-industry, Prince of Songkla University, wageningen university


ncbi_country: Germany

ncbi_isolation_source: Dust

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China

ncbi_isolation_source: Yogurt

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: Campylobacter coli CVM N20344 v1.0

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter coli CVM N20344

ncbi_submitter: FDA/CVM


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_submitter: Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__;f__Candidatus Competibacteraceae;g__Candidatus Contendibacter;s__Candidatus Contendibacter odensensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Contendibacter;s__Candidatus Contendibacter odensensis;x__Candidatus Contendobacter odensis Run_B_J11


ncbi_assembly_name: IMG-taxon 2593339199 annotated assembly

ncbi_organism_name: Paenibacillus sp. UNC496MF

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Alicyclobacillus sendaiensis NBRC 100866

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Brazil: Uberlandia

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Actinotignum timonense

ncbi_submitter: Loyola University Chicago


ncbi_country: Japan

ncbi_isolation_source: Lichen

ncbi_organism_name: Actinomycetospora sp. NBRC 106375

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Finland

ncbi_isolation_source: whole insect

ncbi_organism_name: Arsenophonus nasoniae

ncbi_strain_identifiers: FIN

ncbi_submitter: University of Liverpool


ncbi_country: China: Qiongdong sea region

ncbi_isolation_source: coral

ncbi_organism_name: Allosaccharopolyspora coralli

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Denmark

ncbi_isolation_source: Ulcer

ncbi_organism_name: Acinetobacter seifertii

ncbi_strain_identifiers: NIPH 973

ncbi_submitter: Broad Institute


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Campylobacter jejuni CVM 41923 v1.0

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter jejuni CVM 41923

ncbi_submitter: FDA/CVM


ncbi_organism_name: Hungatella hathewayi 12489931


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_country: New Zealand

ncbi_organism_name: Thermonema lapsum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain: Asturias

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: China: Beijing

ncbi_isolation_source: BALF

ncbi_organism_name: Nocardia puris

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_assembly_name: Salmonella enterica subsp. salamae strain DMA-1

ncbi_country: India

ncbi_isolation_source: mouse stool sample

ncbi_submitter: CSIR-IMTECH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae str. DMA-1


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Italy: Stenico (TN)

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium botulinum D/C

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Streptococcus suis

ncbi_strain_identifiers: CG

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_organism_name: bacterium


ncbi_organism_name: Aerococcus viridans

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Roseburia intestinalis


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_submitter: Tai Zhou Hospital of Traditional Chinese Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Waltera sp.


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University College Cork


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_organism_name: Christensenellales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12414

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: cold seep

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal University of Sao Paulo


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: California

ncbi_isolation_source: Reservoir water column

ncbi_organism_name: Microcystis aeruginosa KLA2

ncbi_submitter: University of Massachusetts Dartmouth


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain

ncbi_isolation_source: Lung swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_isolation_source: lake water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Azerbaijan

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWA2_31_9b

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWA2_31_9b


ncbi_country: Germany: Cologne

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: uncultured Heliomicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Anhui

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Laboratory for Diagnosis and Treatment of Infectious Diseases


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Antarctica: King George Island; Admiralty Bay

ncbi_isolation_source: petroleum-contaminated soil collected near the petroleum pumping and storage warehouse at the Henryk Arctowski Polish Antarctic Station

ncbi_organism_name: Pseudomonas sp. ANT_H14

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_assembly_name: freshwater MAG --- Umea_bin-01567

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: BILS


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Pseudonocardia benzenivorans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_assembly_level: Chromosome

ncbi_organism_name: Fischerella sp. NIES-4106

ncbi_submitter: Toyohashi University of Technology


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Germany

ncbi_organism_name: Escherichia coli

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: The University of Texas at Dallas


ncbi_country: Australia: Coral Sea

ncbi_organism_name: Pseudoalteromonas maricaloris

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Novosphingobium sp. BK258

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: California; Concord

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: manure

ncbi_strain_identifiers: CM EMB KAN 4

ncbi_submitter: Maynooth University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Shandong

ncbi_isolation_source: fecal samples

ncbi_submitter: Provincial Hospital Affiliated to Shandong First Medical University


ncbi_organism_name: Rickettsiales bacterium


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: EMG


ncbi_submitter: Swansea University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Flavobacterium psychrophilum


ncbi_country: Japan

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: Zhejiang University


ncbi_country: USA: California; Eel River; Dobbyn Creek near Alderpoint

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Runella slithyformis

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Canada: Montreal

ncbi_isolation_source: sputum

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Brazil

ncbi_strain_identifiers: IBSBF 1182

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. IBSBF 1182


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces yanii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Streptomyces sp. NPDC095613

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_assembly_name: freshwater MAG --- MJ111018B_bin-0386

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Alberta

ncbi_isolation_source: Sewage influent

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Lethbridge Research and Development Centre


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: USA: FL

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Florida


ncbi_isolation_source: abscess from caseous lymphadenitis

ncbi_organism_name: Corynebacterium pseudotuberculosis 267

ncbi_submitter: Rede Paraense de Genomica e Proteomica


ncbi_country: Costa Rica

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU2 evolved under selective conditions; LB evolved gen 500 Population GS

ncbi_organism_name: Citrobacter freundii

ncbi_strain_identifiers: RU2 LB30

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: cheese

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: The Ohio State University


ncbi_organism_name: Klebsiella quasipneumoniae subsp. quasipneumoniae

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: lung

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Ares Genetics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1419S

ncbi_submitter: Broad Institute


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Streptomyces brevispora

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Rariloculaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Rariloculales;f__Candidatus Rariloculaceae;x__unclassified Candidatus Rariloculaceae;s__Candidatus Rariloculaceae bacterium


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Jiangnan University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Proteus mirabilis

ncbi_strain_identifiers: COFI-RLBCAU-II

ncbi_submitter: College of Fisheries, RLBCAU


ncbi_organism_name: Arenibacter amylolyticus

ncbi_submitter: Ocean University of China


ncbi_organism_name: Breznakia sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_isolate: MIP2440 A

ncbi_organism_name: Brochothrix thermosphacta

ncbi_strain_identifiers: MIP2440 A

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Enterococcus sp. DIV0445

ncbi_submitter: Broad Institute


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Israel: Jerusalem; The Tisch Family Biblical Zoo

ncbi_organism_name: Priestia megaterium

ncbi_submitter: The Hebrew University of Jerusalem


ncbi_organism_name: Roseburia intestinalis


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Listeria innocua

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: hydrothermal vent fluid

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_isolation_source: wound

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Lachnoanaerobaculum sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_country: China: Chongqing

ncbi_isolation_source: feces from farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Legionellales bacterium


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-11782

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Marivita sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: marine sediment sample bbl-31

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: University of California, Santa Barbara

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_isolation_source: mouse gut metagenome


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_submitter: Cleveland Clinic

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_country: USA: WA

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Washington


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Xiamen University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: JCVI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia

ncbi_isolation_source: dairy

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: FRR B 2952

ncbi_submitter: Queensland Health


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Upper gallery; wall diverticulum

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_organism_name: Hallerella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- AM-2014-D2_bin-537


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Roseateles sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Italy

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Japan

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: EMG


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Morocco: Rabat

ncbi_isolation_source: sputum culture

ncbi_submitter: MedBiotech laboratory, faculty of medicine and pharmacy, rabat/ Mohamed V university rabat


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_country: Brazil

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Escherichia coli

ncbi_submitter: WRAIR-Africa


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: Aquaculture pond water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_organism_name: Roseovarius confluentis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_isolation_source: unknown

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: Artisanal dry-fermented salami

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: University of Bologna


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Gar NS 7

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Soochow University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Anaplasma phagocytophilum str. MRK

ncbi_strain_identifiers: MRK

ncbi_submitter: University of Florida


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Endomicrobiia bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Anaerolineales bacterium UBA6663

ncbi_submitter: University of Queensland


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: a diarrheal child

ncbi_organism_name: Streptococcus lutetiensis 033

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: soil

ncbi_organism_name: Alkalicoccobacillus gibsonii

ncbi_submitter: Chung-Ang Univiersity


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universiti Sains Malaysia


ncbi_isolation_source: bark

ncbi_organism_name: Verrucomicrobium sp.

ncbi_submitter: DNASense ApS


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 117

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Ontario

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_country: Norway: Ostfold

ncbi_isolation_source: symptomatic onion

ncbi_organism_name: Rahnella perminowiae

ncbi_submitter: University of the West of England


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0487

ncbi_submitter: Broad Institute


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: NIH/NHGRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: [Clostridium] leptum


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Peptidiphaga sp.

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Carnobacterium maltaromaticum


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Cryptobacteroides bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides bacterium


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Ecuador: Quito

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: Belgium

ncbi_isolation_source: milk

ncbi_strain_identifiers: B524_MRSA_SCCmec type IVa

ncbi_submitter: University of Liege-Faculty of veterinary medicine


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_organism_name: Cuspidothrix sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_country: Austria

ncbi_submitter: Medical University of Vienna


ncbi_country: USA

ncbi_organism_name: Chlamydia muridarum

ncbi_submitter: UTHSCSA


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_country: India: Maharashtra

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Advanced Enzyme Technologies Limited


ncbi_country: China: Weihai

ncbi_isolation_source: sediment

ncbi_organism_name: Marinicauda salina

ncbi_submitter: Shandong University


ncbi_country: China: Guizhou; Fuquan

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Neisseria gonorrhoeae MS11

ncbi_submitter: Broad Institute


ncbi_country: Poland: Lodz

ncbi_isolation_source: skin

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Western Australia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: India: Agartala

ncbi_isolation_source: Sputum of tuberculosis patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Centre for Genetic Engineering and Biotechnology


ncbi_organism_name: Sutterella parvirubra

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWD2_38_11


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Dickeya chrysanthemi

ncbi_submitter: Cornell University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Jiangxi; Yinshan

ncbi_organism_name: Leptospirillum sp.


ncbi_submitter: Virginia Polytechnic Institute and State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. tularensis;x__Francisella tularensis subsp. tularensis TI0902


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Ecole Centrale de Lyon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: blood culture

ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_assembly_name: BSN12 Closure

ncbi_country: USA: Detroit; MI

ncbi_isolation_source: blood

ncbi_submitter: Wayne State University


ncbi_organism_name: Gluconobacter thailandicus NBRC 3257

ncbi_strain_identifiers: NBRC 3257

ncbi_submitter: Yamaguchi University


ncbi_country: India: Sundarbans

ncbi_isolation_source: soil

ncbi_organism_name: Halobacillus sp. GSS1

ncbi_submitter: JADAVPUR UNIVERSITY


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Changchun Veterinary Research Institute,


ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Limosilactobacillus portuensis

ncbi_submitter: University of Texas at Dallas


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolate: VTEC

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_isolation_source: rice

ncbi_organism_name: Geomonas sp. RF6

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2745


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Huashan Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Draconibacterium sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Icahn School of Medicine


ncbi_country: India: Vellore

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient2 sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People Hospital


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Microbacterium sp. EYE_512

ncbi_submitter: China CDC


ncbi_country: Nepal: Himalayas; soil from near a hot spring

ncbi_isolation_source: alpine soil [ENVO:00005741]

ncbi_organism_name: Streptomyces sp. MBT65

ncbi_submitter: Institute of Biology, Leiden University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: eye (conjunctivitis/blepharitis)

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Institute for Microbiology and Epizootics, Freie University Berlin


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Sweden: Orebro

ncbi_isolation_source: orthopedic joint implant

ncbi_organism_name: Finegoldia magna

ncbi_submitter: Aarhus University


ncbi_assembly_name: De novo assembly of KCRI isolate RDK04_284D

ncbi_isolation_source: wound swab

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)