ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CEITEC VETUNI


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: EPFL


ncbi_assembly_level: Scaffold

ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Hesse

ncbi_isolation_source: cow udder

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Hessian State Laboratory


ncbi_assembly_name: S.aureus GR1 1.0

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus subsp. aureus GR1

ncbi_submitter: National Center for Biological Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus GR1


ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_assembly_name: V

ncbi_isolate: V

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: V

ncbi_submitter: DTU


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of South Australia


ncbi_organism_name: Eubacteriaceae bacterium


ncbi_assembly_level: Complete Genome

ncbi_country: USA: FL

ncbi_isolation_source: CSF

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: CDC


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Dubosiella newyorkensis


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Eggerthella sp. BIOML-A5

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Eubacterium sp. CAG:161

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:161


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei


ncbi_strain_identifiers: CDC 191

ncbi_submitter: TIGR/J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky;x__Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: IMG-taxon 2681813547 annotated assembly

ncbi_organism_name: Granulicella rosea

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Madrid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


gtdb_type_species_of_genus: t

ncbi_organism_name: Sphingomicrobium lutaoense

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG12040

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Anaerovorax sp.

ncbi_submitter: EMG


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: uncultured Fusobacterium sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Gansu

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Streptomyces prunicolor

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: Malaysia: Negeri Sembilan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for medical research


ncbi_organism_name: Mesorhizobium australicum

ncbi_submitter: Washington State University


ncbi_country: China: Shanghai

ncbi_isolation_source: Plant

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_country: Canada: Guelph

ncbi_submitter: University of Guelph


ncbi_country: Macau: China

ncbi_isolation_source: mangroves

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: Beijing Forestry University


ncbi_organism_name: Mesorhizobium sp. SB112

ncbi_submitter: University Of Warwick


ncbi_organism_name: Brevundimonas sp.


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-414-O11

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Ares Genetics


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Thermoanaerobaculales bacterium

ncbi_submitter: Shanghai Ocean University


ncbi_country: Australia: James Cook University; Rainforest site; Queensland

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: ALLACaus

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: China: Jilin province

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Chinese Academy of Medical Sciences and Peking Union Medical College


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Wanju County

ncbi_isolation_source: Infected leaves

ncbi_organism_name: Pseudomonas coronafaciens

ncbi_submitter: Chonnam National University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: dog

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus sp. UNC437CL72CviS29

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. UNC437CL72CviS29


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mobiluncus curtisii subsp. curtisii

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas alvandae

ncbi_submitter: Michigan State University


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: uncultured Armatimonadia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium sp. CAG:217

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Sinomonas flava

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Thailand: Trang

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Klebsiella pneumoniae UHKPC06

ncbi_submitter: JCVI


ncbi_country: Samoa

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Xylophilus sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Xylophilus;x__environmental samples;s__uncultured Xylophilus sp.


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Candidatus Avelusimicrobium fimicolum

ncbi_submitter: Stanford University School of Medicine


ncbi_submitter: MPIPZ


ncbi_country: Denmark: Esbjerg E

ncbi_isolation_source: activated sludge from EsbE_18-Q3-R3-47

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Alloprevotella sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG10463

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Paenibacillus sp. TCA20

ncbi_submitter: Toyo University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: uncultured Cellulomonadaceae bacterium


ncbi_organism_name: Candidatus Foliamicus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Foliamicales;f__Candidatus Foliamicaceae;g__Candidatus Foliamicus;x__unclassified Candidatus Foliamicus;s__Candidatus Foliamicus sp.


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)

ncbi_submitter: BGI Research


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolate: SPRUCE 497

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 497

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antwerp


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: The Ohio State University


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_submitter: University of Szeged


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: University of Galway


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: France: Britanny

ncbi_isolation_source: laboratory biofilm exposed to PHMB

ncbi_submitter: Anses


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Sphingobacterium sp. ML3W

ncbi_submitter: INRS


ncbi_organism_name: Clostridiales bacterium


ncbi_country: Belgium

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. SHOUNA76

ncbi_submitter: VIB - UGent


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: HBSJRP 18-2.7

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Yangzhou

ncbi_isolation_source: pork from market

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Streptomyces rapamycinicus NRRL 5491

ncbi_strain_identifiers: NRRL 5491

ncbi_submitter: Korea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces violaceusniger group;s__Streptomyces rapamycinicus;x__Streptomyces rapamycinicus NRRL 5491


ncbi_isolation_source: Instant Soup

ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: Universite Catholique de Louvain


ncbi_organism_name: Streptomyces rubradiris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from transplant house

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Mogibacterium diversum

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: South Korea: Jeju

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pedobacter ginsengisoli

ncbi_submitter: Rural development administration


ncbi_organism_name: Mitsuokella multacida


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CN12


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: freshwater MAG --- Umea2p3_bin-1408

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Nigeria: Benin City

ncbi_isolation_source: Vagina

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Calgary


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_organism_name: Acinetobacter sp. YH12152


ncbi_country: USA

ncbi_isolation_source: Veal carcass

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Klebsiella sp. GG_Kp174

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Gardnerella sp.


ncbi_organism_name: Halomonas sp. HP20-15

ncbi_submitter: Pavol Jozef Safarik University in Kosice, Faculty of Science


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: Italy: Bologna

ncbi_isolation_source: urine

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_organism_name: Prolixibacter bellariivorans

ncbi_submitter: RIKEN-BRC JCM


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_country: China: Beitun;Xinjiang

ncbi_isolation_source: Local food from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_organism_name: Curvibacter sp.

ncbi_submitter: Friedrich Schiller University Jena


ncbi_country: USA: Unknown

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Staphylococcus sp. HMSC062B11

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Commercial cheese starter culture

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_country: China: Beijing

ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: The First Affiliated Hospital of Nanchang University,Nanchang University


ncbi_isolate: AOP31_B2_surf _bin _31

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP31_B2_surf _bin _31

ncbi_submitter: Genoscope


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: MLFNT 12

ncbi_submitter: Medical and Environmental Biotechnology Laboratory


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Colombia: Norte de Santander

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: Mesorhizobium huakuii

ncbi_submitter: Queen's University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Jiangnan University


ncbi_country: China: Jinhua

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Rubrivirga sp. IMCC45206

ncbi_submitter: Inha University


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: EMG


ncbi_country: USA: GA

ncbi_isolation_source: peanut butter

ncbi_submitter: Florida Department of Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_organism_name: Pseudomonas kurunegalensis

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_assembly_name: IMG-taxon 2599185149 annotated assembly

ncbi_organism_name: Thermodesulforhabdus norvegica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Escherichia coli

ncbi_submitter: Stanford Healthcare


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium RIFOXYD2_FULL_35_9


ncbi_submitter: Creighton University


ncbi_isolation_source: fertilized egg

ncbi_organism_name: Vibrio apostichopi

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sphingobium sp.


ncbi_organism_name: bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: BCO Bacterial Genomes


ncbi_organism_name: bacterium 1XD42-54


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudobacillus badius

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Malaysia: Kuala Lumpur

ncbi_organism_name: Oecophyllibacter saccharovorans

ncbi_submitter: University of Malaya


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Rumen uncultured genome RUG13917

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: VA

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Olsenella uli


ncbi_assembly_name: Rumen uncultured genome RUG693

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Poland: Torun

ncbi_isolation_source: soil

ncbi_organism_name: Streptantibioticus silvisoli

ncbi_submitter: Nicolaus Copernicus University


ncbi_country: USA: DE

ncbi_isolation_source: environment


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Dialister sp.


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_submitter: Oregon State University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Odense University Hospital


ncbi_country: Denmark: Odense NW

ncbi_isolation_source: activated sludge from OdNW_18-Q3-R42-56

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NC

ncbi_isolation_source: bovine cow blood

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Candidatus Neomicrothrix sp.

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp.


ncbi_country: Belgium: Leuven

ncbi_isolation_source: sputum from a cystic fibrosis patient

ncbi_organism_name: Burkholderia stabilis

ncbi_strain_identifiers: ATCC BAA-67

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Carboxylicivirga sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Alicyclobacillus fastidiosus

ncbi_submitter: Prof. Waclaw Dabrowski Institute of Agriculture and Food Biotechnology State Research Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: China: Jiangsu

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Soil

ncbi_organism_name: Bacillus mycoides

ncbi_strain_identifiers: ATCC 6462

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China: Shenzhen

ncbi_organism_name: Collinsella sp. TM09-10AT

ncbi_submitter: BGI


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: cecal contents

ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Colon

ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Acinetobacter sp. UBA3098


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Palacky University Olomouc


ncbi_assembly_name: freshwater MAG --- Loc080925-5-5m_bin-0739

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Clermont; QLD

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1948

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Dongying

ncbi_isolation_source: oil-polluted soil

ncbi_organism_name: Rhodococcus sp. p52

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. p52


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_01_FULL_52_10


ncbi_assembly_level: Chromosome

ncbi_country: Portugal

ncbi_isolation_source: Anal

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: National Institute of Health, Portugal


ncbi_organism_name: Bacteroidales bacterium


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Russia: Moscow

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SRCAMB


ncbi_country: China: Yangzhou City; Jiangsu Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Denmark

ncbi_isolation_source: rapid sand filter

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-DS1

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acididesulfobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acididesulfobacter;x__unclassified Candidatus Acididesulfobacter;s__Candidatus Acididesulfobacter sp.


ncbi_country: China: Nangjing

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Devosia phytovorans

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Japan:Hokkaido; Sapporo; Jozankei hot spring

ncbi_isolation_source: microbial mat

ncbi_organism_name: Sulfuritortus calidifontis

ncbi_submitter: The Institute of Low Temperature Science, Hokkaido University


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Hawaii Graf Lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Weifang People's Hospital


ncbi_strain_identifiers: NA 50

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Candidatus Cryptobacteroides bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Shigella boydii

ncbi_submitter: University Hospital Basel


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Candidatus Coproplasma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;x__unclassified Candidatus Coproplasma;s__Candidatus Coproplasma sp.


ncbi_organism_name: Candidatus Azotimanducaceae bacterium


ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: China: Bubeng

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: United Kingdom

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: University of Agriculture in Krakow


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_isolation_source: feces

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: University of California, Los Angeles


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Sichuan Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_assembly_name: Rumen uncultured genome RUG12633

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limadaptatus;s__Candidatus Limadaptatus stercorigallinarum


ncbi_country: Canada

ncbi_isolation_source: pig feces

ncbi_organism_name: Aliarcobacter butzleri L354

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: PA

ncbi_isolation_source: rabbit feces

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Paenibacillus forsythiae T98

ncbi_submitter: China Agricultural University


ncbi_country: Taiwan

ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis OFXR-26

ncbi_submitter: Broad Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium minimum

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: National Medicines Institute


ncbi_country: Antarctica: King George Island; Barton Peninsula

ncbi_isolation_source: lichen

ncbi_organism_name: Sphingosinicellaceae bacterium

ncbi_submitter: Korea Polar Research institute


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Tepidanaerobacteraceae bacterium

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_isolation_source: Yellow Sea tidal flat sediment

ncbi_organism_name: Bacillus gaemokensis

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: Greece

ncbi_isolation_source: bronchial secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: bioMerieux


ncbi_isolate: metabat2_XCR1_HOM_7852_bwa.72 MAG

ncbi_organism_name: Candidatus Scatomonas pullistercoris

ncbi_strain_identifiers: metabat2_XCR1_HOM_7852_bwa.72 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scatomonas;s__Candidatus Scatomonas pullistercoris


ncbi_organism_name: Streptomyces gelaticus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Zhaoqing

ncbi_isolation_source: sushi

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Center for Disease Control and Prevention of zhaoqing


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Urinary Tract Infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: South China Sea

ncbi_isolation_source: fluid

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas trivialis

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: drinking water

ncbi_organism_name: Legionellales bacterium UBA4759

ncbi_submitter: University of Queensland


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Spirosoma fluviale

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_isolation_source: Nose

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: China Agricultural University


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Poland: Warszawa

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: National Medicines Institute


ncbi_country: Norway: Bergen

ncbi_isolation_source: synovial fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: Chile: Penas Gulf

ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces sp. G11C(2021)

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: EMG


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_country: China: Yunnan

ncbi_isolation_source: plant sample

ncbi_organism_name: Stenotrophomonas mori

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_organism_name: Duncaniella muris


ncbi_country: USA: Oklahoma

ncbi_isolation_source: in vitro derived from type strain R26

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: landfill soil

ncbi_organism_name: Acinetobacter sp. LUNF3

ncbi_submitter: Langfang Normal University


ncbi_organism_name: Candidatus Ratteibacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Ratteibacteria;x__unclassified Candidatus Ratteibacteria;s__Candidatus Ratteibacteria bacterium


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_country: Russia: Republic of Altai

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute 'Microbe'


ncbi_organism_name: uncultured Chthoniobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Granulicatella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Hainan

ncbi_isolation_source: meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: GENENTECH


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Norway

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter paneuropaeus

ncbi_submitter: University of Innsbruck


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Hospital

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: USA: University of Georgia in Athens; GA

ncbi_isolation_source: single cell amplified by WGA-X; hindgut

ncbi_submitter: University of Georgia


ncbi_country: Kenya: Eastern African Rift Valley

ncbi_isolation_source: soda lake Magadi

ncbi_organism_name: Euhalothece natronophila Z-M001

ncbi_submitter: Chungnam National Univ.


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Dyadobacter sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Streptomyces sp. NBC_00079

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University Hospital Basel


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Van Lang University


ncbi_isolate: AOP1_C1_surf _bin _9

ncbi_organism_name: Vibrio casei

ncbi_strain_identifiers: AOP1_C1_surf _bin _9

ncbi_submitter: Genoscope


ncbi_organism_name: Phascolarctobacterium sp.


ncbi_organism_name: Tianweitania sediminis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Francisellaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Microbacterium alkaliflavum

ncbi_submitter: Guangxi Academy of Science


ncbi_organism_name: Kitasatospora sp. NPDC085930

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: North-West University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Laboratoire de Microbiologie. University hospital Sahloul


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 2 0 to 5cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Kelaniya


ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: fistula fluid

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Streptomyces sp. NRRL F-5126

ncbi_strain_identifiers: NRRL F-5126

ncbi_submitter: University of Illinois


ncbi_country: India: Gujarat

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: DC

ncbi_isolation_source: Blood

ncbi_organism_name: Brevundimonas vesicularis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Italy

ncbi_isolation_source: Pastries

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_country: China: Jiangsu

ncbi_organism_name: Spiroplasma chinense

ncbi_strain_identifiers: CCH

ncbi_submitter: Academia Sinica


ncbi_organism_name: Mesorhizobium sp. L103C105A0

ncbi_submitter: University of Southern California


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Switzerland: Kerzers

ncbi_isolation_source: stream surface water

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Staphylococcus sp. HMSC073E10

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Staphylococcus capitis subsp. capitis

ncbi_submitter: Imperial College London


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_assembly_name: BPB

ncbi_country: Australia

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Burkholderia pseudomallei MSHR303

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Actinomyces sp.


ncbi_organism_name: Sedimentitalea sp. XS_ASV28

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Echinicola rosea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China

ncbi_isolation_source: seed

ncbi_organism_name: Xanthomonas sp. LMG 12461

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_assembly_name: Rumen uncultured genome RUG10641

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: USA: GA

ncbi_isolation_source: eye

ncbi_organism_name: Dolosigranulum pigrum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Georgia


ncbi_country: Netherlands

ncbi_isolation_source: wound

ncbi_strain_identifiers: spa type t111

ncbi_submitter: University of Groningen


ncbi_isolation_source: Blood culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Christian Medical College and Hospital


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Chryseobacterium vietnamense

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: IMG-taxon 2608642216 annotated assembly

ncbi_organism_name: Aristaeella lactis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: Thailand: Satun

ncbi_isolation_source: Rock

ncbi_organism_name: Prauserella cavernicola

ncbi_strain_identifiers: ASG 168

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA13723

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Queensland


ncbi_country: China: Shenzhen; Guangdong

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium japonicum

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Sphingomonas phyllosphaerae

ncbi_submitter: UNESP-FCAV


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Robertmurraya sp.

ncbi_submitter: Ecole Centrale de Lyon


ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_strain_identifiers: 47w winter

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Flavobacterium johnsoniae

ncbi_submitter: Universidad Michoacana de San Nicolas de Hidalgo


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Vienna


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Saccharopolyspora spinosa NRRL 18395

ncbi_submitter: shanghai jiao tong university


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: water

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: CORNELL UNIVERSITY


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Nitrospirae bacterium GWA2_46_11

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium GWA2_46_11


ncbi_country: Switzerland

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Ethiopia: Amhara; North Gondar

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Dokdonia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Xi an

ncbi_isolation_source: OPAHs polluted soil

ncbi_organism_name: Crystallibacter crystallopoietes

ncbi_submitter: Shaanxi microbiology institute


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: France

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: CIRM BIA 1374

ncbi_submitter: Agroscope


ncbi_country: Israel

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C732_98

ncbi_submitter: IGS


ncbi_organism_name: Serratia marcescens H1q

ncbi_submitter: University of Malaya


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Bartonella chomelii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of Alberta


ncbi_assembly_name: IMG-taxon 2675903063 annotated assembly

ncbi_organism_name: Virgibacillus chiguensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Ruminococcus sp. CAG:488

ncbi_submitter: DTU


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Hainan Normal University


ncbi_assembly_name: Ruthe

ncbi_country: Finland

ncbi_organism_name: Rubellimicrobium thermophilum DSM 16684

ncbi_submitter: Roseobacter SFB


ncbi_country: Switzerland: Epilimnion Lake Zurich

ncbi_isolation_source: Surface water from Lake Zurich

ncbi_organism_name: Flavobacterium sp. ZE23DGlu08

ncbi_submitter: University of Zurich


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Atlantic Ocean: Norwegian Sea; Soria Moria Vent Field Gallionella Garden

ncbi_isolation_source: biosyringe of iron mat from hydrothermal vent

ncbi_organism_name: Mariprofundus sp.

ncbi_submitter: University of Bergen


ncbi_country: USA: Raleigh; NC

ncbi_isolation_source: Reduced NaCl fermented cucumber spoilage

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: North Carolina State University


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: bulk soil from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-B-30

ncbi_submitter: Rothamsted Research


ncbi_organism_name: Amaricoccus sp.


ncbi_country: USA: PA

ncbi_isolation_source: canine rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: NanJing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Ligilactobacillus pobuzihii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_country: Peru: Lima

ncbi_isolation_source: Fecal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Naval Medical Research Center, Biological Defense Research Directorate


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H2300

ncbi_submitter: Broad Institute


ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Dechloromonas sp. UBA5021

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG10607

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: rye

ncbi_organism_name: Weissella confusa

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Prevotella jejuni

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Romboutsia sp. 1001216sp1

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Clostridium perfringens


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_isolation_source: Pleural effusion

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Jeotgalicoccus nanhaiensis


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Linnaeus University


ncbi_country: China

ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-1150

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Mariniphaga sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Plague Control Research Institute of Siberia and Far East


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium asiaticum

ncbi_submitter: JCVI


ncbi_country: Denmark

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: CAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: Australia: Newcastle

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Durban

ncbi_isolation_source: Amasi

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Federal Research Centre "Fundamentals of Biotechnology" of the Russian Academy of Sciences


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus sp. FSL A5-0031

ncbi_submitter: Cornell University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Liverpool


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificales bacterium

ncbi_submitter: Portland State University


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: University of Vienna


ncbi_country: USA: Ohio

ncbi_organism_name: Fusobacteriota bacterium

ncbi_submitter: The Ohio State University


ncbi_country: Malaysia

ncbi_isolation_source: faecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Malaya


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: The University of Texas at Dallas


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Marinomonas profundi

ncbi_submitter: Shandong University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Morton Grove; Illinois

ncbi_isolation_source: pond water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: freshwater MAG --- Day2-1_bin-079

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolate: CON6 bin34

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_strain_identifiers: CON6 bin34

ncbi_submitter: China Agricultural University


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: sputum

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: MHB broth

ncbi_organism_name: Escherichia coli

ncbi_submitter: China agriculture university


ncbi_country: China: Jiangyin

ncbi_submitter: Jiangsu Province Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhodoferax sp. OV413

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: France: Loire Atlantique; St Julien de Concelle

ncbi_isolation_source: soft rot on leaf

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Sorbonne University


ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Bacillus atrophaeus BACI051-E

ncbi_submitter: Transformational Medical Technologies Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus atrophaeus;x__Bacillus atrophaeus BACI051-E


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPHIGHO2_12_FULL_37_9


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_organism_name: uncultured Rhodoluna sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Rhodoluna;x__environmental samples;s__uncultured Rhodoluna sp.


ncbi_isolation_source: perianal

ncbi_organism_name: Acinetobacter baumannii TG02017

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Phyllobacteriaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: Kansas

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 1-176-05_S1_C2

ncbi_submitter: IGS


ncbi_country: Norway

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Olav University Hospital


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Planctomicrobium piriforme

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Peru:Ascope; Casa Grande; Toma Jauregui

ncbi_organism_name: Yersinia pestis PY-16

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Prevotella multiformis

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Streptomyces griseoloalbus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Coprothermobacter proteolyticus DSM 5265

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Afghanistan

ncbi_isolation_source: Tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-363-C20

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Qingdao Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Vircell S.L.


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Prochlorotrichaceae cyanobacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Salmonella sp. ZJHZ21_0198

ncbi_submitter: Zhejiang university