ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Bielefeld University


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Iowa


gtdb_representative: f

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Birmingham


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Loc090907-6m_bin-667

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__environmental samples;s__uncultured Candidatus Berkelbacteria bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium R499

ncbi_submitter: Washington University


ncbi_assembly_level: Complete Genome

ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: Antigen 34

ncbi_submitter: Research and Production Enterprise Antigen


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: USA

ncbi_submitter: Icahn School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Iron Curtain Cave; Chilliwack; British Columbia

ncbi_organism_name: Streptomyces sp. ICC1

ncbi_submitter: University Of Ottawa


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Austria

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: EMG


ncbi_organism_name: Peptoniphilus harei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Fannyhessea vaginae

ncbi_refseq_category: reference genome

ncbi_submitter: US Food and Drug Administration

ncbi_type_material_designation: assembly from type material


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Sphingomonas sp. Leaf242

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


gtdb_type_species_of_genus: t

ncbi_organism_name: Thermotoga maritima MSB8

ncbi_submitter: University of California San Diego


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: uncultured Flavonifractor sp.


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Thauera sp.


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Stanford Healthcare


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: uncultured Calditrichaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pseudodesulfovibrio cashew

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Mahidol University


ncbi_assembly_name: IMG-taxon 2654588128 annotated assembly

ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Sutterellaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: New Jersey

ncbi_isolation_source: soil

ncbi_organism_name: Devosia riboflavina

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Texas

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Emeryville

ncbi_isolation_source: compost

ncbi_organism_name: Sorangiineae bacterium NIC37A_2

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: No


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UMCG Groningen


ncbi_submitter: Zhejiang university


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: freshwater MAG --- YR1_bin-0979

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Prevotella denticola

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: BES

ncbi_submitter: Enze Hospital


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020044173

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Oman: Muscat

ncbi_isolation_source: root

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: TRC-Oman


ncbi_country: Italy

ncbi_isolation_source: ready to eat food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Amedibacterium intestinale

ncbi_submitter: URMITE


ncbi_country: China: Zhongshan

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 14ESS1015


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Russia: Moscow

ncbi_isolation_source: digestive system

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: SRCAMB


ncbi_organism_name: Streptomyces sp. NPDC053728

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Malaysia: Sarawak

ncbi_isolation_source: stool

ncbi_submitter: Institute for medical research


ncbi_organism_name: Vibrio sp. M60_M70

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Phocaeicola dorei


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Sheffield


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Micromonospora parva


ncbi_organism_name: Aphanizomenon sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Stakelama sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolate: AOP38_B2_surf _bin _7

ncbi_organism_name: Microbacterium sp.

ncbi_strain_identifiers: AOP38_B2_surf _bin _7

ncbi_submitter: Genoscope


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: Rumen uncultured genome RUG653

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Thailand

ncbi_isolation_source: hilsa fish

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000211


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Izemoplasma sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;x__unclassified Candidatus Izemoplasma;s__Candidatus Izemoplasma sp.


ncbi_country: South Korea

ncbi_isolation_source: plant

ncbi_organism_name: Paraburkholderia tagetis

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Estonia

ncbi_isolation_source: skin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_assembly_name: IMG-taxon 2675903229 annotated assembly

ncbi_organism_name: Clostridium uliginosum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Erasmus University Medical Center


ncbi_country: Japan: off Shimokita Peninsula

ncbi_isolation_source: subseafloor sediment

ncbi_organism_name: Tenericutes bacterium MO-XQ

ncbi_strain_identifiers: MO-XQ

ncbi_submitter: Japan Agency for Marine-Earth Science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__unclassified Mycoplasmatota;s__Tenericutes bacterium MO-XQ


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 2

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of Wyoming


ncbi_organism_name: Prevotella histicola

ncbi_submitter: EMG


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Holophagales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Kenya

ncbi_organism_name: Prevotellaceae bacterium UBA6385


ncbi_organism_name: Proteus vulgaris

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020052553

ncbi_submitter: Broad Institute


ncbi_country: China: Beijing

ncbi_isolation_source: freshwater lake anaerobic enchiment culture with carbon source acetate

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Segatella oulorum


ncbi_organism_name: Porphyromonas macacae

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Sanya people's hospital


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: USA: Palmer Alaska

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Candidatus Hemicellulosilyticus sp. P3

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Hemicellulosilyticus;x__unclassified Candidatus Hemicellulosilyticus;s__Candidatus Hemicellulosilyticus sp. P3


ncbi_isolation_source: Broiler

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Missouri


ncbi_country: Spain

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Puerto Rico

ncbi_isolation_source: large intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_isolation_source: secretion

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_submitter: KULeuven


ncbi_isolation_source: Cold smoked salmon brine injected

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_assembly_name: Rumen uncultured genome RUG10548

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Streptomyces sp. NPDC047803

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: Romania: Bucharest

ncbi_isolation_source: Enviromental

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: USA: Columbia; MO

ncbi_submitter: Cancer Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_country: Switzerland

ncbi_isolation_source: Ear Swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_assembly_name: freshwater MAG --- Umea1_bin-1710

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Lentisphaera araneosa HTCC2155

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Hardjo-bovis

ncbi_submitter: Massey University


ncbi_organism_name: Streptococcus infantarius

ncbi_submitter: SC


ncbi_organism_name: Bacteroides intestinalis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter felis

ncbi_submitter: University of Antwerp, Belgium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: uncultured Nocardioides sp.


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Microcoleus sp. AT8-B1

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Mediterranea massiliensis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Italy: Apulia; Bari

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bari "Aldo Moro", Bari, Italy


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Streptomyces sp. NPDC127097

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptococcus infantarius

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China: Shandi River Basin; Yangquan city

ncbi_isolation_source: River sediment polluted by acid mine drainage

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: China University of Mining and Technology


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Faecimonas intestinavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Faecimonas;s__Candidatus Faecimonas intestinavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Faecimonas;s__Candidatus Faecimonas intestinavium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Denmark: Lyngby; DTU campus; hole in the ground dug out by an animal

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_01565

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chifeng Center for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: China: South China Sea

ncbi_isolation_source: sea water

ncbi_organism_name: Marinifilum sp. JC120

ncbi_submitter: Ocean University of China


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: New Caledonia: Banc de L Orne/Walpole

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Ustalcina ferruginea)


ncbi_organism_name: uncultured Mesorhizobium sp.

ncbi_submitter: EMG


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Universiti of Malaya


ncbi_organism_name: Helicobacter ganmani


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: Venezuela: Caracas

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: BGK

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Russia: Moscow

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Barnesiellaceae;g__Coprobacter;s__Coprobacter fastidiosus;x__Coprobacter fastidiosus NSB1 = JCM 33896


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospira sp.

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Egypt: Alexandria

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_organism_name: Bartonella apis

ncbi_submitter: Ghent University


ncbi_country: South Korea: Cheonan

ncbi_isolation_source: residental environment

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Jeonbuk National University


ncbi_country: Mauritius: Poudre d Or

ncbi_submitter: University of Mauritius


ncbi_country: USA: MA

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Japan

ncbi_isolation_source: river water

ncbi_submitter: Kyoto University


ncbi_assembly_name: Salmonella enterica CVM N50419 v1.0

ncbi_country: USA: CT

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA: Umatilla County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1D9

ncbi_submitter: Oregon State University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacillus thuringiensis serovar aizawai

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar aizawai


ncbi_country: China: Anhui

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_isolation_source: Spinach

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: Spain: Santander

ncbi_isolation_source: clinical

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Federal University of Bahia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Collinsella sp.

ncbi_submitter: AAFC


ncbi_isolation_source: Hairy root tissue

ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Institute for Agricultural and Fisheries and Food Research (ILVO)


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Shanghai Children's Hospital


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 691

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium CG_4_10_14_0_8_um_filter_37_24


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Russia:Krasnoyarsk Region

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of Wyoming


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_isolate: DPGZI

ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: FC

ncbi_submitter: Inner Mongolia University for the Nationalities


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: UZ Brussel


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Phyllobacteriaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: France: Leucate lagoon

ncbi_isolation_source: water

ncbi_organism_name: Vibrio mediterranei

ncbi_submitter: UPMC Observatoire de Banyuls


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: South Korea: Gyeonggi-do

ncbi_isolation_source: chicken meat

ncbi_submitter: Korea University Graduate School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Polynucleobacter meluiroseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptomyces sp. NPDC021354

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella sp. 89780

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Mozambique: Manhica

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Collinsella aerofaciens


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptomyces erythrogriseus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: freshwater MAG --- Umea_bin-08385

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter bacterium nBUS_28


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Denmark: Viby

ncbi_isolation_source: activated sludge from Viby_18-Q3-R106-67

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB05-285

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom:Scotland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Streptomyces sp. WAC06273

ncbi_submitter: McMaster University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pittsburgh


ncbi_country: Canada: Ontario

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: USA

ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: FDA


ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EBI


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Japan

ncbi_isolation_source: feces; 3 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_submitter: bioBiome, Inc.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_assembly_name: Rumen uncultured genome RUG10277

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Brazil: Piracicaba

ncbi_isolation_source: Brazilian ethanol production industries

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Univesity of Sao Paulo


ncbi_country: Belgium

ncbi_isolation_source: tracheal aspiration

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Aminobacterium mobile

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Candidatus Akkermansia intestinavium

ncbi_submitter: Quadram Institutte


ncbi_country: Brazil: Pernambuco

ncbi_organism_name: Xanthomonas citri pv. viticola

ncbi_strain_identifiers: CCRMXCV 80

ncbi_submitter: CAPES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. viticola


ncbi_isolation_source: not provided

ncbi_organism_name: Capnocytophaga sp. oral taxon 338

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;x__unclassified Capnocytophaga;s__Capnocytophaga sp. oral taxon 338


ncbi_assembly_name: Rumen uncultured genome RUG13840

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Bacillus cereus group sp. BceL091

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL091


ncbi_country: India: Maharashtra

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Thermoanaerobacterium sp. CMT5567-10

ncbi_submitter: Agharkar Research Institute


ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: WWTP Brno

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolate: labscale reactor_MAG9

ncbi_organism_name: Niabella sp.

ncbi_strain_identifiers: labscale reactor_MAG9

ncbi_submitter: European Union Horizon 2020 research and innovation programme


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Porcipelethomonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp. NPDC047813

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany

ncbi_isolation_source: cow

ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: farm soil

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: University of California, Riverside


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_country: Australia: Adelaide

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Faecousia faecipullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: EMG


ncbi_country: Puerto Rico: CEIBA

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Prevotella intermedia

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: Atlantic Ocean

ncbi_isolation_source: intestine

ncbi_organism_name: Pseudoalteromonas sp. APC 3213

ncbi_submitter: University College Cork


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: WAGENINGEN UNIVERSITY, LABORATORY OF SYSTEMS AND SYNTHETIC BIOLOGY.


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2865200

ncbi_submitter: IGS


ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: National University of Singapore


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Postoperative maxillary cyst

ncbi_organism_name: Streptococcus chosunensis

ncbi_strain_identifiers: ChDC B353

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_country: Democratic Republic of the Congo: equatorial region

ncbi_isolation_source: fecal samples

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: India: Kolkata

ncbi_isolation_source: Human gut

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Coprobacillus sp. AM18-4LB-d2

ncbi_submitter: BGI


ncbi_country: Austria: Vienna

ncbi_isolation_source: heart

ncbi_organism_name: Morganella morganii

ncbi_submitter: University Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_country: China:Henan; Nanyang

ncbi_isolation_source: trachea

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Chlorogloeopsis sp. ULAP02

ncbi_submitter: University of the Philippines Diliman


ncbi_submitter: University of Galway


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: College of Basic Medical Science


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: WA

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA: GA

ncbi_isolation_source: ground turkey

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_country: Hong Kong: Pokfulam

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Brucella pseudogrignonensis

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Nocardia farcinica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: China:Hebei; Baoding

ncbi_isolation_source: lung


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0067R

ncbi_submitter: Broad Institute


ncbi_organism_name: Microbacterium testaceum StLB037

ncbi_submitter: Utsunomiya University


ncbi_country: India: Kerala

ncbi_isolation_source: throat swab

ncbi_submitter: Christian Medical College


ncbi_country: Ireland

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_organism_name: Streptomyces albiflavescens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Korea

ncbi_isolation_source: ginseng rhizosphere soil

ncbi_organism_name: Mesorhizobium sp. DCY119

ncbi_submitter: UNIST


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Corynebacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: China: Bama; Guangxi

ncbi_isolation_source: gut of healthy centenarian

ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_strain_identifiers: MN-Gup

ncbi_submitter: Mengniu Hi-tech Dairy Product Beijing Co., Ltd.


ncbi_country: Belarus: Gomel

ncbi_organism_name: Corynebacterium belfantii

ncbi_submitter: Northumbria University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Puyang Oil Field General Hospital


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Patiriisocius sp.

ncbi_submitter: University of East Anglia


ncbi_submitter: national health research institutes


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Parma


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Aquificales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: EMG


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Brown University


ncbi_assembly_name: Rumen uncultured genome RUG11749

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Sweden: Tjarno

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Myrtea sp. 'scaly one' KF741663)


ncbi_country: India: Drass; Ladakh

ncbi_isolate: DRA bin11

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: DRA bin11

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Tours

ncbi_isolation_source: bloodstream infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: groundwater

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Paenibacillus terrae HPL-003

ncbi_submitter: Macrogen Inc.


ncbi_organism_name: butyrate-producing bacterium A2-207

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: wastewater

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Southwest Medical University


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 164_1

ncbi_isolation_source: feces

ncbi_organism_name: Oscillibacter sp.

ncbi_strain_identifiers: CIM:MAG 164_1

ncbi_submitter: Mayo Clinic


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Tunisia

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: University of Minneosta


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Huashan Hospital


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Brazil

ncbi_isolation_source: fecal sample

ncbi_organism_name: Aeromonas australiensis

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_organism_name: Bacillaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: Rumen uncultured genome RUG395

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: National Agri-Food and Biomanufacturing Institute


ncbi_organism_name: Xanthomonas sp. WCS2019Cala2-53

ncbi_submitter: Utrecht University


ncbi_organism_name: Vreelandella nanhaiensis

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_country: Sweden: Kalmar

ncbi_isolation_source: WWTP inlet

ncbi_organism_name: Escherichia coli

ncbi_submitter: Region Kalmar County


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Thermus sp.

ncbi_submitter: Montana State University


ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M2


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: SC


ncbi_country: China: Liaoning province

ncbi_isolation_source: secretion

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 648901 39-2


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: coastal seawater

ncbi_submitter: Yonsei University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Roseobacteraceae;g__Sulfitobacter;s__Sulfitobacter donghicola;x__Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565


ncbi_country: USA: Chicago

ncbi_isolation_source: yogurt

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Ireland

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University College Cork


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Singulisphaera sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jeonbuk National University


ncbi_country: USA:Little Rock

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_organism_name: Desulfobacteria bacterium

ncbi_submitter: Moskow Lomosonov State University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: US Food and Drug Administration


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB10-097

ncbi_submitter: Broad Institute


ncbi_country: Kenya

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: Argentina: Tucuman-San Miguel de Tucuman

ncbi_isolation_source: stool

ncbi_organism_name: Shigella flexneri

ncbi_submitter: INSIBIO-UNT


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Kasetsart University


ncbi_country: USA: Washington; Pullman

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1518S


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Stutzerimonas stutzeri SDM-LAC

ncbi_strain_identifiers: SDM-LAC

ncbi_submitter: Shan Dong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;x__Stutzerimonas stutzeri group;x__Stutzerimonas stutzeri subgroup;s__Stutzerimonas stutzeri;x__Stutzerimonas stutzeri SDM-LAC


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Sichuan Agricultural University


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: EMG


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC015492

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: FL Keys

ncbi_isolation_source: coral tissue

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: NOAA/UM


ncbi_country: Russia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Research Institute of Physico-Chemical Medicine


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_country: Thailand

ncbi_strain_identifiers: SGSC 2216

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. SARA36


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Dorea sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Pseudomonas sp. A0308

ncbi_submitter: UMR 1300 BIOEPAR


ncbi_organism_name: Streptomyces massasporeus


ncbi_organism_name: Micrococcus yunnanensis

ncbi_submitter: Texas A&M University, School of Vet Med


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Thermus sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Collinsella intestinalis


ncbi_isolation_source: lake water

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Midgut Rimicaris exoculata metagenome

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: ANIWHA


ncbi_organism_name: Nonomuraea dietziae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Persephonella sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Oxford


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lymph node of a patient with oculo-glandular tularemia

ncbi_submitter: Unite des Rickettsies, CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. holarctica;x__Francisella tularensis subsp. holarctica URFT1


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Butyricimonas synergistica

ncbi_submitter: University of Chicago


ncbi_country: Switzerland

ncbi_isolation_source: powdered infant formula control

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: British Columbia

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Caulobacteraceae bacterium


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Escherichia albertii

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Clostridiales bacterium


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 169 - depth 500m

ncbi_organism_name: SAR324 cluster bacterium REDSEA-S39_B5

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium REDSEA-S39_B5


ncbi_country: Russia: Northern region of Western Siberia

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_isolation_source: pig lungs

ncbi_organism_name: Glaesserella parasuis HPS9

ncbi_submitter: Newport Laboratories, A Sanofi company


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Lodz University of Technology


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: EPFL


ncbi_assembly_name: Salmonella enterica CVM 43814 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: India: Assam

ncbi_isolation_source: hospital patient

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Acetothermia bacterium UBA3574

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Acetothermia bacterium UBA3574


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Streptomyces sp. NPDC057939

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthobacter aminoxidans

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Rio de Janeiro

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospira sp.


ncbi_organism_name: Microcystis aeruginosa

ncbi_submitter: University of Michigan


ncbi_isolate: NHPB

ncbi_organism_name: Candidatus Hepatobacter penaei

ncbi_strain_identifiers: NHPB

ncbi_submitter: University of Virginia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;s__Candidatus Taylorbacteria bacterium RIFCSPLOWO2_01_FULL_45_34b


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Ohio

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Finegoldia magna


ncbi_country: Germany

ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: University of Exeter


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_isolation_source: marine water

ncbi_organism_name: Pacificimonas flava

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AM53-13BH

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: Noakhali Science and Technology Uniersity


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: NHGRI/NIH


ncbi_country: Ethiopia: Addis Ababa

ncbi_isolation_source: Ethiopian Kocho

ncbi_organism_name: Lacticaseibacillus paracasei subsp. paracasei

ncbi_submitter: DuPont Nutrition & Biosciences


ncbi_country: USA: Wyoming

ncbi_isolation_source: retail meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: Helicobacter mehlei

ncbi_submitter: Institute of Microbiology and Parasitology VF UL, Slovenia


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: ANSES Ploufragan


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_submitter: University of Ibadan, Nigeria


ncbi_country: Switzerland: Ellighausen

ncbi_organism_name: Xanthomonas graminis pv. graminis

ncbi_submitter: XTeam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas graminis;x__Xanthomonas graminis pv. graminis


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_43_13


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Feces

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Australia

ncbi_isolation_source: Clinical Lab

ncbi_submitter: La Trobe University


ncbi_country: Russia: Krasnodar Krai; Kuban

ncbi_isolation_source: winter wheat; rhizoplane

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Kazan Federal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: MA; Boston

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Broad Institute


ncbi_country: China: Fuyang

ncbi_isolation_source: sewage

ncbi_organism_name: Rhizobium cremeum

ncbi_submitter: Anhui Agricultural University


ncbi_country: Taiwan

ncbi_isolation_source: freshwater

ncbi_organism_name: Rhizobium alvei

ncbi_submitter: College of Life Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D10_bin-0481

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Escherichia sp. WS2893_2

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: LSHTM


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Salmonella sp. NW842

ncbi_submitter: Sichuan University


ncbi_organism_name: Halarcobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas sp. EB276 TE3739

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Fibrobacteraceae bacterium


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis ERV62

ncbi_submitter: Washington University


ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_country: Democratic Republic of the Congo

ncbi_isolation_source: biopsy

ncbi_organism_name: Mycobacterium ulcerans

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: urine from female

ncbi_organism_name: Escherichia coli TOP2386

ncbi_submitter: National University of Singapore, Genome Institute of Singapore


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pseudomonas sp. UBA4194

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Anaerotruncus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Francisella tularensis subsp. novicida

ncbi_submitter: Northern Arizona University


ncbi_country: China

ncbi_isolation_source: drainage liquid

ncbi_submitter: Yangzhou University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Dissulfurispiraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG11964

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Zytex Biotech Pvt Ltd


ncbi_country: China: Jiangsu

ncbi_isolation_source: Intestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: SRCAMB


ncbi_country: Poland

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Chlamydia abortus

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Burkholderia pseudomallei MSHR840

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Philippines

ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Antarctica

ncbi_organism_name: Ochrobactrum sp. WY7

ncbi_submitter: Sun Yat-Sen University


ncbi_country: China: Anhui

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0941

ncbi_submitter: Broad Institute


ncbi_assembly_name: IMG-taxon 2617270740 annotated assembly

ncbi_organism_name: Priestia flexa

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: South Africa: Durban

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Desulfomonile tiedjei

ncbi_submitter: University Duisburg-Essen


ncbi_country: France: APHM

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-b_bin-120

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: EMG


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_submitter: South China Agricultural University


ncbi_country: USA

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: Aminicenantes bacterium OTU 1

ncbi_genome_category: derived from single cell

ncbi_strain_identifiers: JGI OTU-1

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Aminicenantaceae;g__Candidatus Aminicenans;s__Candidatus Aminicenans sakinawicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Aminicenantaceae;g__Candidatus Aminicenans;s__Candidatus Aminicenans sakinawicola;x__Candidatus Aminicenans sakinawicola JGI OTU-1


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ruminococcaceae bacterium AF52-21

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Faucicola osloensis

ncbi_submitter: University of the Sunshine Coast


ncbi_country: USA: New Hampshire

ncbi_isolation_source: algae from rocky intertidal

ncbi_organism_name: Pseudoalteromonas sp. NEC-BIFX-2020_002

ncbi_submitter: New England College


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: feces


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universiteit Gent


ncbi_country: Singapore

ncbi_isolation_source: 30 sequencing batch reactor activited sludge day 315

ncbi_organism_name: Candidatus Competibacter sp.

ncbi_submitter: Activated sludge

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;x__unclassified Candidatus Competibacter;s__Candidatus Competibacter sp.


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W79990_080112

ncbi_submitter: Broad Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: Rumen uncultured genome RUG11603

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: New York City

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Moscow

ncbi_isolation_source: stool sample

ncbi_submitter: Pirogov Russian National Research Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum;sb__Bifidobacterium longum subsp. longum;x__Bifidobacterium longum subsp. longum 7-1B


ncbi_submitter: Cornell University


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: bone marrow

ncbi_organism_name: Brucella abortus CNGB 436

ncbi_strain_identifiers: CNGB 436

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus CNGB 436


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Minnesota


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: University of Washington


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_isolation_source: egg

ncbi_submitter: Qingdao Agricultural Universtiy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_country: Japan:Wakayama; Wakayama; Wakayama bay

ncbi_isolate: Brittle star

ncbi_organism_name: Paralimibaculum aggregatum

ncbi_strain_identifiers: NKW23;Brittle star

ncbi_submitter: Kyoto University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: human fecal sample

ncbi_organism_name: Haloimpatiens lingqiaonensis

ncbi_submitter: URMITE


ncbi_country: China: Shanxi

ncbi_isolation_source: root

ncbi_organism_name: Streptomyces alfalfae

ncbi_submitter: Hebei Agricultural University


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_country: Mexico: Puebla

ncbi_isolation_source: Peritoneal dialysis fluid

ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Sphingobium sp. CCH11-B1

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AM29-5AC

ncbi_submitter: BGI


ncbi_country: Denmark

ncbi_isolation_source: lactic starter

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: CIRM-BIA 1211

ncbi_submitter: Brigham Young University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Streptomyces sp. NPDC060275

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Shanxi Agricultural University


ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: HO

ncbi_submitter: Cochin hospital


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: 37f fall

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vidyasirimedhi Institute of Science and Technology


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: ZXQ

ncbi_submitter: Enze Hospital


ncbi_organism_name: Ensifer sp.


ncbi_organism_name: Campylobacter jejuni


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Utrecht University


ncbi_country: Germany: Hamburg-Reitbrook

ncbi_isolation_source: water

ncbi_organism_name: Bacteroidetes bacterium UBA7692

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA7692


ncbi_organism_name: Rhodococcus sp. 27YEA6

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 27YEA6


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Micromonospora sediminicola

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Brigham and Women s Hospital

ncbi_isolation_source: vulvar abscess

ncbi_organism_name: Pseudomonas aeruginosa BWH032

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG12605

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium