ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Heyndrickxia coagulans


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pseudomonas sp. 5S3

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: Rumen uncultured genome RUG14677

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Northeast Normal University


ncbi_organism_name: Maridesulfovibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: lake water

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Agriterribacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Chile: Manao Bay; Ancud

ncbi_isolation_source: aquaculture marine sediment

ncbi_organism_name: Rhodococcus sp. MS16

ncbi_submitter: Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. MS16


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolate: Trichococcus pasteurii

ncbi_organism_name: Trichococcus pasteurii

ncbi_strain_identifiers: Trichococcus pasteurii

ncbi_submitter: WAGENINGEN UNIVERSITY


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: CO

ncbi_isolation_source: milk bovine cow

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: University of Balochistan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: University of Southern California


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Opitutaceae bacterium


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: China CDC


ncbi_country: India: Chandigarh

ncbi_isolation_source: air

ncbi_organism_name: Saccharibacillus alkalitolerans

ncbi_refseq_category: reference genome

ncbi_submitter: Institute of Microbial Technology

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: International Space Station

ncbi_isolation_source: Overhead 4 Node 1

ncbi_organism_name: Pantoea sp.

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Phyllobacterium sp.

ncbi_submitter: Argonne National Laboratory


ncbi_country: China: Anhui

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: USA

ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: NCPPB 4613

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T57415

ncbi_submitter: Broad Institute


ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: University of Bern


ncbi_isolation_source: mammary gland

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: ECC-M

ncbi_submitter: National Animal Disease Center / ARS / USDA


ncbi_country: China: Wuhan

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: college of life science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Harrisoniibacteriota;s__Candidatus Harrisonbacteria bacterium RIFCSPLOWO2_01_FULL_40_28


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Michigan

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__;c__;o__;f__;g__Candidatus Avacholeplasma;s__Candidatus Avacholeplasma faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Avacholeplasma;s__Candidatus Avacholeplasma faecigallinarum


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_assembly_name: Rumen uncultured genome RUG11078

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: India

ncbi_isolation_source: soil

ncbi_organism_name: Chromobacterium alkanivorans

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_organism_name: Lentilactobacillus diolivorans

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus SAFR-032

ncbi_submitter: BGI


ncbi_country: USA: Laysan; Hawai i

ncbi_isolation_source: hypersaline lake water

ncbi_organism_name: Pantoea anthophila

ncbi_submitter: University of Hawaii at Manoa


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_isolation_source: kimchi

ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: World Institute of Kimchi


ncbi_isolation_source: tidal flat sediment on the southern coast of Korea

ncbi_organism_name: Salinimonas lutimaris

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas sp. ESBL1

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: Nitrosopumilus sp.

ncbi_submitter: Tang lab


ncbi_submitter: Korea Polar Research Institute


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Kosakonia cowanii

ncbi_submitter: The Institute of Chemical Biology and Fundamental Medicine SB RAS


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolate: AOP27_A1_surf _bin _14

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: AOP27_A1_surf _bin _14

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Salmonella sp. SKLX080037

ncbi_submitter: Zhejiang university


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Hamburg-Eppendorf


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Streptomyces sp. NPDC058175

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: PA

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: China:Shenyang; Fifth Xi River

ncbi_isolate: XRTCP

ncbi_isolation_source: enrichment cultures inoculated with river sediment

ncbi_organism_name: Dehalobacter sp.

ncbi_strain_identifiers: XRTCP

ncbi_submitter: Institute of Applied Ecology (CAS)


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_organism_name: Pontimonas sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Anaerosporobacter sp.

ncbi_submitter: EBI


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Kitchen B

ncbi_organism_name: Tatumella sp. JGM91

ncbi_submitter: Cornell University


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_organism_name: Arsenophonus sp.

ncbi_submitter: University of South Bohemia in Ceske Budejovice, Faculty of Science


ncbi_organism_name: Sporosarcina sp.


ncbi_isolation_source: clinical

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Halanaerobiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-426-G02

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: NIFDC


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_country: China: Shanghai City

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Serratia fonticola

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Beijing

ncbi_isolation_source: fecal sample

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium HUM_16


ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: France: estuaire de l Aulne (Rade de Brest)

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudomonas sp. AF03-9

ncbi_submitter: IFREMER


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Basel


ncbi_country: USA: MD

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: Pakistan


ncbi_country: India

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_assembly_name: x

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Collinsella stercoris

ncbi_submitter: Washington University School of Medicine


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: Rumen uncultured genome RUG13891

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_country: China

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agriculture University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bauldia litoralis

ncbi_submitter: University of Southern California


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Finland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: CIRM BIA 265

ncbi_submitter: Agroscope


ncbi_organism_name: Neobacillus drentensis

ncbi_submitter: Auburn University


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: CSIR-NCL


ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_assembly_name: freshwater MAG --- MJ120531B_bin-482

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1223

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1223


ncbi_organism_name: Streptomyces sp. NPDC079141

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Antioquia


ncbi_isolation_source: Tracheal Aspirate/Wash

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_strain_identifiers: Lallmahomed 30

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Australia: Sydney

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Sydney


ncbi_country: United Kingdom: Gloucestershire

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in a breeding trial plot

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: gdodcwi15 v01

ncbi_country: USA:Silver Spring; MD

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae MRSN 1319

ncbi_strain_identifiers: MRSN 1319

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MRSN 1319


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: China Agricultural University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Kvitko Lab


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0389R

ncbi_submitter: Broad Institute


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Gemmobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Alcanivoracaceae bacterium


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: Collage of Public Health, Imam Abdulrahman Bin Faisal University (IAU University)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Streptosporangium longisporum

ncbi_submitter: Jiangsu Normal University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Weifang People's Hospital


ncbi_isolate: AOP35_01H_surf _bin _33

ncbi_organism_name: Agrococcus casei

ncbi_strain_identifiers: AOP35_01H_surf _bin _33

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Galway


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella sp. S008_62011

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: Unknown

ncbi_submitter: SC


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_assembly_name: freshwater MAG --- E-4_bin-069

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: candidate division FCPU426 bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division FCPU426;s__candidate division FCPU426 bacterium


ncbi_organism_name: Adlercreutzia sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: DG


ncbi_organism_name: Tissierellaceae bacterium

ncbi_submitter: Indian Institute of Technology Kharagpur


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: Rumen uncultured genome RUG11663

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Paris Saclay University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_organism_name: Salmonella enterica subsp. enterica


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_submitter: University of Tartu


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: New Zealand

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Massey University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_assembly_name: freshwater MAG --- MJ111018B_bin-0660

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Microbacterium sp. CFBP 8790

ncbi_submitter: INRAE


ncbi_strain_identifiers: OSS 713

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Russia: Sakhalin Island

ncbi_organism_name: Exiguobacterium sp. s37

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s37


ncbi_country: Norway: Svalbard; Spitsbergen

ncbi_isolation_source: ice-free soil under anthropogenic influence from the patio of the Polish Polar Station Hornsund

ncbi_organism_name: Rhodococcus sp. ARC_M5

ncbi_submitter: University of Warsaw

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. ARC_M5


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge bioreactor

ncbi_organism_name: Caballeronia sp. PC1

ncbi_submitter: Tsinghua University


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Belgium

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: PREPARE (Platform foR European Preparedness Against (Re-)Emerging Epidemics, EU-FP7, # 602525


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: India

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_country: Colombia: Bolivar

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: China: Beijing

ncbi_organism_name: Blautia sp. NSJ-140

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus pneumoniae PT8114

ncbi_submitter: Yale University


ncbi_country: China: Hubei

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Italy: Bologna

ncbi_isolation_source: bronchial lavage

ncbi_submitter: University of Trento

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;sb__Mycobacterium intracellulare subsp. chimaera


ncbi_country: USA: GA

ncbi_isolation_source: stream

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly


ncbi_assembly_name: IMG-taxon 2617270731 annotated assembly

ncbi_organism_name: Flagellimonas zhangzhouensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Spain

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Bacteroidota bacterium


ncbi_organism_name: Mycolicibacterium frederiksbergense

ncbi_submitter: Aarhus University


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Cellvibrionales bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: Ghana: Accra

ncbi_isolation_source: sediment; water and sewage treatment plant

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Ghana


ncbi_country: Colombia: Cali

ncbi_isolation_source: Landfill Leachates

ncbi_organism_name: Vibrio injensis

ncbi_submitter: Universidad Santiago de Cali


ncbi_organism_name: Absicoccus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Virginia

ncbi_organism_name: Bacteroides zoogleoformans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Japan: Gumma

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Tokyo Institute of Technology


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA40563

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_name: Salmonella enterica CVM N45952 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR2017

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sapienza University of Rome


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- E14_bin-0077

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Alkalihalobacillus sp. NPDC127517

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthobacter aminoxidans

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Streptomyces sp. NPDC090231


ncbi_organism_name: Comamonas sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Alcanivorax sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Synechococcus sp. MIT S9508

ncbi_strain_identifiers: MIT S9508

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: tidal flat

ncbi_organism_name: Pollutimonas harenae

ncbi_submitter: ELTE Eotvos Lorand University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mexico: Cuatro Cienegas Coahulia; Churince intermediate lagoon

ncbi_isolation_source: lagoon sediment

ncbi_organism_name: Streptomyces sp. CC77

ncbi_submitter: CINVESTAV-Langebio


ncbi_country: Australia: Australian Capital Territory

ncbi_submitter: The University of Queensland


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Lentibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_isolation_source: meromictic lake

ncbi_organism_name: Candidatus Thiodictyon syntrophicum

ncbi_submitter: University of Geneva


ncbi_organism_name: Carnobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Mycolicibacterium goodii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: Loki non-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Halopseudomonas xinjiangensis

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: skin scrapings from the infected head

ncbi_organism_name: Corynebacterium capitovis DSM 44611

ncbi_submitter: Bielefeld University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- KR_bin-1614

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: NCGM


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU1 evolved under selective conditions; BHI evolved gen 950 Population GS

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: RU1 BHI3

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: USA: Las Vegas; NM

ncbi_isolation_source: liver; spleen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis;x__Yersinia pestis subsp. pestis bv. Orientalis;x__Yersinia pestis biovar Orientalis str. AS200901539


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Kenya

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium catenulatum PV20-2

ncbi_submitter: ETH Zurich


ncbi_organism_name: Mycolicibacterium crocinum

ncbi_submitter: Research Institute of Tuberculosis


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WM6386

ncbi_submitter: University of Illinois


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Candidatus Pseudothioglobus aerophilus

ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus aerophilus


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Stahliibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Stahliibacteriota;x__unclassified Candidatus Stahliibacteriota;s__Candidatus Stahliibacteriota bacterium


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Lachnoanaerobaculum sp. MSX33

ncbi_submitter: JCVI


ncbi_organism_name: Clostridioides difficile F601

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China:Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_strain_identifiers: Xcv DC 98 P2A

ncbi_submitter: Ottawa Research and Development Center


ncbi_assembly_name: Rumen uncultured genome RUG11628

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_organism_name: Escherichia coli


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Tunisia: Tunis; Mohamed Kassab Hospital

ncbi_isolation_source: COVID-19 hospitalized patient in the Intensive Care Unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Tunis El Manar


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Leclercia sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_country: USA

ncbi_isolation_source: bronchus

ncbi_organism_name: Mycobacterium tuberculosis 1821ADB45

ncbi_submitter: Vanderbilt University


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Waddliaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_country: China: Tianjin

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: USDA


gtdb_type_species_of_genus: t

ncbi_country: China: East China Sea

ncbi_isolation_source: water

ncbi_organism_name: Minwuia thermotolerans

ncbi_submitter: Zhejiang University


ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: the seqafrica consortium


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sp. GD03909

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Corpse

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_organism_name: Stenotrophomonas sp. GD03877


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Mycoplasmataceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Listvyanka village; South Baikal

ncbi_isolation_source: Brandtia sp.

ncbi_organism_name: Streptomyces sp. IB2014 016-6

ncbi_submitter: Saarland University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonas nitroreducens

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_genome_representation: partial

ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Kunming University


ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Teagasc


ncbi_organism_name: Thalassovita sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptomyces sp. NPDC059513

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: freshwater lake; 80 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium CG_4_9_14_0_2_um_filter_38_9


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Clostridiaceae bacterium UBA6110

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Mammaliicoccus sp. FSL K6-3158

ncbi_submitter: Penn State


ncbi_country: China

ncbi_organism_name: Pseudactinotalea suaedae

ncbi_submitter: China CDC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled faeces sample collected from floor of poultry farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_country: Nepal: Ralpa-Ramdi

ncbi_isolation_source: Wild animal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_country: Antarctica: James Ross Island; Black Lake

ncbi_isolation_source: Microbial mat BL2

ncbi_organism_name: Brunnivagina elsteri CCALA 953

ncbi_strain_identifiers: CCALA 953

ncbi_submitter: University of Iceland


ncbi_organism_name: Streptococcus pyogenes GA41039

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Guizhou

ncbi_isolation_source: pig

ncbi_submitter: Massey University


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__environmental samples;s__uncultured Candidatus Competibacteraceae bacterium


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Azospirillum sp. 47_25


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Trebonia sp.


ncbi_assembly_name: De novo assembly of KCRI isolate R0009_566A

ncbi_isolation_source: wound swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: Thailand: Nakhonratchasrima

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_country: Russia

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: uncultured Colwellia sp.

ncbi_submitter: EMG


ncbi_country: Israel: Jerusalem; The Tisch Family Biblical Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: The Hebrew University of Jerusalem


ncbi_organism_name: Allorhizobium borbori

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Human fecal samples

ncbi_submitter: microbial pathogenic ecology group


ncbi_isolation_source: sewage


ncbi_organism_name: Enterococcus dongliensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Thailand: Songkhla

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 12 - depth 25m

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: sediments

ncbi_organism_name: Aliiroseovarius sp. S1339

ncbi_submitter: shandong university


ncbi_country: Germany: Magdeburg

ncbi_isolation_source: gastric antrum Patient476

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_organism_name: Escherichia coli

ncbi_submitter: Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_assembly_name: Rumen uncultured genome RUG13125

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yonathiibacteriota;s__Candidatus Yonathbacteria bacterium CG17_big_fil_post_rev_8_21_14_2_50_43_9


ncbi_country: Germany

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Cologne


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_country: Poland: Piersciec

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Silesia in Katowice


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Proteus vulgaris

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1976

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway

ncbi_isolation_source: Blood culture

ncbi_submitter: St. Olav University Hospital


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine


ncbi_isolate: CFBP 4784

ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_strain_identifiers: CFBP 4784

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_organism_name: Sphingobacterium sp.


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_assembly_name: freshwater MAG --- Erken-D7_bin-0350

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Italy: Putifigari

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_country: China: Jiangsu

ncbi_isolation_source: bile

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Aarhus University


ncbi_country: USA: California; Middletown

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Malaysia: KL

ncbi_isolation_source: gastric biopsy tissue

ncbi_organism_name: Helicobacter pylori UM111

ncbi_submitter: UM-UNSW-MGRC


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12120

ncbi_submitter: South China Agricultural University


ncbi_country: China: Hunan

ncbi_isolation_source: farming pond

ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Detroit; Michigan; urban community garden

ncbi_isolation_source: soil

ncbi_organism_name: Rahnella sp. GSA61A

ncbi_submitter: Wayne State University


ncbi_organism_name: Pararhodobacter sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: BGI


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: China: Urumqi;Xinjiang

ncbi_isolation_source: Prepared meat products from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Asaia bogorensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Kyushu University


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_country: Russia: Tyva Republic

ncbi_isolation_source: Khadyn soda lake; Tyva Republic; Russia

ncbi_organism_name: Candidatus Contubernalis alkaliaceticus

ncbi_submitter: National Research Center "Kurchatov Institute"


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medicine Greifswald


ncbi_organism_name: Meiothermus ruber

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Shewanella frigidimarina

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Mahidol University


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Serratia sp. CY27690

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY27690


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Kyoto University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Micromonospora sp. DT229

ncbi_submitter: University of Liege


ncbi_organism_name: Aeromonas veronii


ncbi_country: China: Shanghai

ncbi_isolation_source: anammox sludge

ncbi_organism_name: Calditrichia bacterium

ncbi_submitter: East China of university of science and technolongy


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Multivorans sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;f__Candidatus Multivoraceae;g__Candidatus Multivorans;x__unclassified Candidatus Multivorans;s__Candidatus Multivorans sp.


ncbi_organism_name: Vreelandella titanicae

ncbi_submitter: Shanghai Jiaotong University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: Berkeley; California; bioreactor at Lawrence Berkeley National Laboratory

ncbi_isolate: Tolsyn

ncbi_isolation_source: bioreactor seeded with sewage sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: Tolsyn

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacterium plexicaudatum

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnobacterium sp.


ncbi_assembly_name: freshwater MAG --- C-2_bin-299

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Curvibacter sp.

ncbi_submitter: BILS


ncbi_submitter: EPFL


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_country: United Kingdom

ncbi_organism_name: Brachyspira sp. SAP_772

ncbi_submitter: University of Southampton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira;x__unclassified Brachyspira (in: bacteria);s__Brachyspira sp. SAP_772


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22965;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Spain: Salamanca

ncbi_organism_name: Phyllobacterium endophyticum

ncbi_submitter: Universidad de Salamanca


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01958

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_isolation_source: sediment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Ciceribacter selenitireducens ATCC BAA-1503

ncbi_submitter: CBMSO


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Lithuania

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_isolate: metabat2_coassembly_bwa.708 MAG

ncbi_organism_name: Clostridia bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.708 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Xanthomonas citri pv. punicae

ncbi_submitter: University of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. punicae


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Preputial swab

ncbi_organism_name: Actinobaculum suis

ncbi_submitter: School of Veterinary Medicine and Animal Science / University of Sao Paulo


ncbi_country: Portugal

ncbi_isolation_source: Wastewater effluent

ncbi_submitter: Universidade de Aveiro


ncbi_country: Belgium

ncbi_submitter: University of Liege


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: chicken breast

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Verrucomicrobia bacterium UBA1731

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA1731


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cb016

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Australia: Brisbane

ncbi_organism_name: Alistipes sp.


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 325

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SNUC 1326

ncbi_submitter: University of Calgary


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus sp. S784/96/1

ncbi_submitter: APHA


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Alistipes communis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AM44-9AT

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Tanzania: Dar es Salaam

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bergen


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: China

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Actinomyces sp. zg328

ncbi_submitter: China CDC


ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Solomon Islands: Temotu

ncbi_isolation_source: Right conjunctiva of a child with trachoma

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: London School of Hygiene & Tropical Medicine


ncbi_isolation_source: Cloacal swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_organism_name: Erythrobacter sp. NFXS35

ncbi_submitter: iBET


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Toho University


ncbi_country: USA: Massachusetts; Petersham

ncbi_isolation_source: see publication for details

ncbi_organism_name: Paenibacillus sp. RC67

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Pseudolactococcus raffinolactis


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: oil-polluted soil

ncbi_organism_name: Rhodococcus maanshanensis

ncbi_strain_identifiers: IEGM 1396

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_organism_name: Bulleidia sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Prevotella sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: WRAIR-Africa


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Franconibacter helveticus 513

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_organism_name: Ornithinimicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CGMCC 8198

ncbi_submitter: Tianjin University of Science and Technology


ncbi_isolation_source: activated sludge

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Kasetsart University


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-115

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Algeria: In Amenas

ncbi_isolation_source: Crude oil

ncbi_organism_name: Sediminivirga luteola

ncbi_submitter: Pasteur Institute of Algeria


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Aerococcus sanguinicola

ncbi_submitter: Loyola University Chicago


ncbi_isolate: Lactobacillus mudanjiangensis AMBF249

ncbi_isolation_source: Spontaneous fermented carrot juice

ncbi_organism_name: Lactiplantibacillus mudanjiangensis

ncbi_strain_identifiers: Lactobacillus mudanjiangensis AMBF249

ncbi_submitter: UANTW


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Caldilineaceae bacterium SB0661_bin_34

ncbi_submitter: University of Queensland


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Phyllobacteriaceae bacterium UBA1059


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Kenya: Kilifi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Micromonospora matsumotoense

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: Ireland: Dublin

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Maynooth University


ncbi_country: South Korea: Wanju

ncbi_isolation_source: Lettuce

ncbi_organism_name: Pseudomonas sp. V104_6

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Methylophilus sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Rakuno Gakuen University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter sp. TUM15366

ncbi_submitter: Toho University


ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Microbacterium enclense

ncbi_submitter: Jet Propulsion Laboratory


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Propionibacterium sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: France

ncbi_isolation_source: wheat sourdough

ncbi_organism_name: Leuconostoc citreum

ncbi_strain_identifiers: LBAE B3

ncbi_submitter: Brigham Young University


ncbi_organism_name: Candidatus Competibacter sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;x__unclassified Candidatus Competibacter;s__Candidatus Competibacter sp.


ncbi_isolate: AOP5_CZ1_surf _bin _21

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: AOP5_CZ1_surf _bin _21

ncbi_submitter: Genoscope


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA4166

ncbi_submitter: University of Queensland


ncbi_country: Belgium

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Hasselt University


ncbi_country: USA: St. Joseph; Minnesota

ncbi_isolation_source: standing water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: China: NanChang; JiangXi

ncbi_isolation_source: patient blood

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_strain_identifiers: NUFHKp

ncbi_submitter: Shanghai JiaoTong University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Campylobacter volucris

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Riflemargulisbacteria;x__unclassified Candidatus Riflemargulisbacteria;s__Candidatus Riflemargulisbacteria bacterium


ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA: MI

ncbi_isolation_source: brain pigeon

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides uniformis dnLKV2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: South Australia

ncbi_submitter: Curtin University


ncbi_country: South Korea

ncbi_isolation_source: marine

ncbi_organism_name: Neobacillus thermocopriae

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Kitasatospora sp. NPDC127111

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Gordonibacter sp.

ncbi_submitter: University of Iowa


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Escherichia coli KTE203

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Turkey: Aydin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hatay Mustafa Kemal University, Faculty of Veterinary Medicine


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: Blood culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: uncultured Hyphomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Shewanella chilikensis

ncbi_submitter: South China Agriculture University


ncbi_country: Niger

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-265


ncbi_organism_name: Sinimarinibacterium flocculans

ncbi_submitter: Tang lab


ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Sedimenticola;x__unclassified Sedimenticola;s__Candidatus Sedimenticola sp. (ex Thyasira tokunagai)


ncbi_assembly_name: IMG-taxon 2547132468 annotated assembly

ncbi_organism_name: Stenotrophomonas sp. CC120222-04

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Harvard University


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: United Kingdom

ncbi_isolation_source: seawater

ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Ocean university of China