ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: University of California, Berkeley


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_assembly_level: Contig

ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_assembly_level: Scaffold

ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: MMUST biological


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: BGI-Shenzhen


gtdb_representative: t

ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. PGP41

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Blood

ncbi_submitter: Erasmus University Medical Center


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Clostridiales bacterium UBA1775

ncbi_submitter: University of Queensland


ncbi_country: USA: PA

ncbi_isolation_source: infant

ncbi_organism_name: Escherichia coli DEC2C

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Vibrio nigripulchritudo

ncbi_submitter: Laboratory of Genome Science Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Denmark

ncbi_strain_identifiers: Broiler parent109

ncbi_submitter: University of Copenhagen


ncbi_country: Colombia

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: JCVI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridiaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Syria

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minnesota


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: AAFC


ncbi_isolation_source: unknown

ncbi_organism_name: Acidiferrobacterales bacterium

ncbi_submitter: UNIVERSITY OF JENA


ncbi_organism_name: Bacteroides clarus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: USA: MD

ncbi_isolation_source: Whole Black Pepper

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Henriciella sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Wujia sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Germany

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: Saudi Arabia


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium: Comblain-au-Pont

ncbi_isolation_source: cave

ncbi_organism_name: Streptomyces lunaelactis

ncbi_submitter: Center for Protein Engineering


ncbi_country: USA

ncbi_isolation_source: processed meat

ncbi_organism_name: Escherichia coli 10.0821

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_country: Pacific Ocean

ncbi_isolation_source: sea water

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: China Agricultural University


ncbi_organism_name: Vibrio sp. V17_P4S1T151

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: actinobacterium SCGC AAA041-L13

ncbi_strain_identifiers: SCGC AAA041-L13

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pseudoporcinus

ncbi_submitter: SC


ncbi_country: China: Shache County; Xinjiang

ncbi_organism_name: Shouchella shacheensis

ncbi_refseq_category: reference genome

ncbi_submitter: Sichuan University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: Stool Specimen

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: icddr,b


ncbi_assembly_name: Rumen uncultured genome RUG14639

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_assembly_name: freshwater MAG --- MJ110830A_bin-484

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: PAGU 1798

ncbi_isolate: PAGU 1798

ncbi_organism_name: Fusobacterium watanabei

ncbi_strain_identifiers: PAGU 1798

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Chile

ncbi_isolation_source: salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Shizuoka

ncbi_organism_name: Pseudomonas ficuserectae

ncbi_strain_identifiers: ICMP 7848

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas ficuserectae


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_organism_name: Klebsiella sp. 121960

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_isolation_source: sediment [ENVO_00002007]

ncbi_organism_name: Vibrio alfacsensis

ncbi_submitter: Microbial Evolution and Function Researches, Graduate School of Life Sciences, Tohoku University


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Anaerolineales bacterium UBA2374

ncbi_submitter: University of Queensland


ncbi_country: China: Beijing

ncbi_submitter: Peking University Third Hospital


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NIZO food research


ncbi_country: Thailand

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Health Canada


ncbi_isolation_source: Distilled spirit fermenting cellar

ncbi_organism_name: Pediococcus cellicola

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: maize silage

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_organism_name: bacterium spbL1type3-1

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Lubbock

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas Tech University


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: Technical University of Denmark


ncbi_country: India: Madhya Pradesh; Sehore; Mographool

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Jiangsu

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Caldimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Italy: Torino

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Variovorax sp.


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;x__pseudomallei group;s__Burkholderia pseudomallei;x__Burkholderia pseudomallei NCTC 13392;x__Burkholderia pseudomallei str. NCTC 13392 substr. morphotype_6


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Peru: Lima

ncbi_isolation_source: wildlife

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: Guangxi University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Ruthenibacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gaiella sp.


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-4368

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA191

ncbi_submitter: Broad Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_assembly_name: Burkholderia  cenocepacia BCC1197

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Xanthomonas axonopodis Xac29-1

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Planctomyces sp. SH-PL62

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Texas

ncbi_organism_name: Rhodococcus sp. SORGH_AS_0301

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. SORGH_AS_0301


ncbi_country: Spain: Cantabria; Altamira Cave

ncbi_isolation_source: Cave wall

ncbi_organism_name: Pseudomonas sp. N2-11

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Qingdao Agriculture University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: New Hampshire

ncbi_isolation_source: ascending colon aspirate

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: freshwater anammox upflow column Reactor

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: KAUST


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_47_10


ncbi_country: Tunisia: Jendouba

ncbi_isolation_source: oxygen nozzle from reanimation room of Intensive Care Unit

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Sciences of Tunisia, ElManar, Laboratory of LMBA


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. 2010C-3053


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Helcococcus ovis

ncbi_submitter: University of Florida


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Fusobacterium nucleatum subsp. nucleatum

ncbi_submitter: Forsyth Institute


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: fluid urethra

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Belgium

ncbi_organism_name: Helicobacter heilmannii

ncbi_strain_identifiers: type

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aeromicrobium halocynthiae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Turkey: Kayseri

ncbi_isolation_source: Fish Farm

ncbi_organism_name: Acinetobacter albensis

ncbi_submitter: Erciyes University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: USA: Marcell Experimental Forest

ncbi_isolation_source: soil

ncbi_organism_name: Syntrophaceae bacterium UBA1164

ncbi_submitter: University of Queensland


ncbi_country: Canada: Quebec

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O9:H10

ncbi_submitter: Government of Canada


ncbi_isolation_source: Feral swine feces

ncbi_organism_name: Escherichia coli


ncbi_country: Dominican Republic

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: tracheobronchial wash

ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: School of Veterinary Medicine and Animal Science, University of Sao Paulo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Research Institute for Systems Biology and Medicine


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Finland: Lammi; Lake Lovojarvi

ncbi_isolation_source: lake water

ncbi_organism_name: Methylovulum psychrotolerans

ncbi_submitter: Tampere University


ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;o__Candidatus Polarisedimenticolales;f__Candidatus Polarisedimenticolaceae;x__unclassified Candidatus Polarisedimenticolaceae;s__Candidatus Polarisedimenticolaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Austria: Vienna

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__environmental samples;s__uncultured Candidatus Rokubacteria bacterium


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Aliivibrio sp.

ncbi_submitter: Kiel University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Spirochaetia bacterium


ncbi_organism_name: Salmonella sp. SAL4451

ncbi_submitter: Zhejiang university


ncbi_organism_name: Nevskiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: uncultured Prolixibacteraceae bacterium


ncbi_organism_name: Rhodococcus coprophilus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Variovorax sp. ZT5P30

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Paenibacillaceae bacterium


ncbi_organism_name: uncultured Klebsiella sp.


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bradyrhizobium centrosematis

ncbi_submitter: IRD


ncbi_assembly_name: freshwater MAG --- Ki2-D4_bin-0800

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: China

ncbi_isolation_source: plant root

ncbi_organism_name: Clostridium paridis

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: USA

ncbi_organism_name: Gordonia sp. BP-119

ncbi_submitter: ZHEJIANG UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. BP-119


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Segatella hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces sp. JV186

ncbi_submitter: Washington University in St. Louis


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: colon biopsy

ncbi_organism_name: Brachyspira aalborgi

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Russia: Tomsk

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: Research Institute for Plague Control


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Australia: New South Wale

ncbi_isolation_source: Bile of chicken infected with Spotty Liver Disease

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_isolation_source: Human blood

ncbi_organism_name: Vibrio cidicii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Leptotrichiaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: marathon study consortium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_organism_name: Legionella shakespearei DSM 23087


ncbi_assembly_name: Rumen uncultured genome RUG768

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P10RS

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P10RS


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_country: Spain

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Russia: Kazan

ncbi_isolation_source: breast milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kazan Federal University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Mexico

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CIAD-Mazatlan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: IMG-taxon 2657245723 annotated assembly

ncbi_organism_name: Streptomyces sp. DconLS

ncbi_strain_identifiers: DconLS

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Spain: Asturias

ncbi_organism_name: Bifidobacterium crudilactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: China: Wuhan

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from transplant house

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: University of Queensland


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_country: Norway: Trondheim fjord

ncbi_isolation_source: marine sponge

ncbi_organism_name: Actinoalloteichus sp. GBA129-24

ncbi_submitter: Bielefeld University


ncbi_country: Taiwan

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: Academia Sinica


ncbi_organism_name: Rhodococcus sp. HA99

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. HA99


ncbi_organism_name: Pseudomonas soli

ncbi_submitter: Kyungpook national university


ncbi_organism_name: Aeromonas sp. S17(2024)

ncbi_submitter: the Chinese University of Hong Kong


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Clostridium neonatale

ncbi_submitter: URMITE


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Zhejiang

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Bern


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_country: Brazil: Dourados

ncbi_submitter: LNCC


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: NIH/NCI


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: CHU Montpellier


ncbi_assembly_name: Draft Genome Assembly ORS3365-1

ncbi_country: Senegal

ncbi_organism_name: Mesorhizobium plurifarium

ncbi_submitter: IRD


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolate: W

ncbi_organism_name: Candidatus Dehalogenimonas loeffleri

ncbi_strain_identifiers: W

ncbi_submitter: Shenyang Institute of Applied Ecology, Chinese Academy of Sciences


ncbi_isolation_source: freshwater metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Coprococcus catus

ncbi_submitter: EMG


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: East China University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Brazil: Sobradinho

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: UFMG


ncbi_organism_name: Dorea sp. 5-2


ncbi_country: United Kingdom: London

ncbi_isolation_source: Plaque (caries +)

ncbi_organism_name: Actinomyces oris

ncbi_submitter: King's College London


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo AC


ncbi_country: USA: Kauai Island

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: KIMY

ncbi_submitter: University of California Merced

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Hubei

ncbi_isolation_source: Rice wine Koji

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Microbulbifer halophilus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hainan Medical University


ncbi_submitter: Jilin Agricultural University


ncbi_organism_name: Flavobacterium sp. MAHUQ-57

ncbi_submitter: Gachon University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_submitter: Lund University


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Corynebacterium renale

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Varibaculum cambriense

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EBI


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Stanford University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Spain: Mallora

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces prasinus

ncbi_strain_identifiers: NRRL B-2712

ncbi_submitter: USDA/ARS/NCAUR


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M043S2

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Korea

ncbi_isolation_source: human-associated habitat

ncbi_organism_name: Mycobacterium tuberculosis K

ncbi_strain_identifiers: K

ncbi_submitter: Seoul National University


ncbi_country: Spain: Burgos

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency (FOI)


ncbi_country: Kazakhstan: Akmola region

ncbi_isolation_source: eye

ncbi_organism_name: Moraxella bovoculi

ncbi_submitter: National Center for Biotechnology


ncbi_country: USA

ncbi_isolation_source: leaf sample

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_isolation_source: metagenome

ncbi_organism_name: Succiniclasticum ruminis

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_submitter: Biomin Research Center


ncbi_assembly_name: Rumen uncultured genome RUG12483

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Broad Institute


ncbi_organism_name: Prevotella denticola CRIS 18C-A

ncbi_strain_identifiers: CRIS 18C-A

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella denticola;x__Prevotella denticola CRIS 18C-A


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. m1-16

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. m1-16


ncbi_country: Chile

ncbi_isolation_source: culture

ncbi_submitter: Universidad Mayor

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Oleiphilaceae bacterium

ncbi_submitter: SCOPE


ncbi_country: Egypt

ncbi_isolation_source: fromage Domiati

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: CIRM-BIA 2133

ncbi_submitter: Brigham Young University


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Geobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: China: Zhejiang

ncbi_isolation_source: meat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Alistipes shahii


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Hungatella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: IMG-taxon 2654587897 annotated assembly

ncbi_organism_name: Oceanobacillus limi

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: South Korea: Seoul

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University


ncbi_organism_name: Nocardia sp. NPDC058244

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Thailand: Khon Kean

ncbi_isolation_source: vagina

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: RCEID, Khon Kaen University


ncbi_country: Portugal

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UCIBIO/REQUIMTE, Laboratory of Bacteriology, Faculty of Pharmacy, University of Porto


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Africa: Driefontein mine in Carletonville district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: France: Bordeaux

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: rat gut

ncbi_organism_name: Ruminococcaceae bacterium UBA7189

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonas syringae CC1543

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae CC1543


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: EMG


ncbi_country: China: Shanghai

ncbi_isolation_source: S1-enrichment culture from tap water-filter-ammonium

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Fudan University


ncbi_submitter: University of Waterloo


ncbi_isolate: XDR-PA

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_assembly_name: Protochlamydia naeglerophila

ncbi_organism_name: Candidatus Protochlamydia massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: University of Camerino


ncbi_organism_name: Micromonospora luteifusca

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: South Korea

ncbi_isolation_source: a wastewater treatment plant

ncbi_organism_name: Sphingomonas hankookensis

ncbi_submitter: JIUJIANG UNIVERSITY


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: University of Washington


ncbi_organism_name: [Scytonema hofmanni] UTEX 2349

ncbi_strain_identifiers: UTEX 2349

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Tolypothrichaceae;g__Tolypothrix;s__[Scytonema hofmanni] UTEX B 1581;x__[Scytonema hofmanni] UTEX 2349


ncbi_country: Poland: Warsaw

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_country: France: Normandy

ncbi_isolation_source: blood

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_assembly_name: CCCM 085

ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: CCCM 085

ncbi_submitter: The University of Queensland


ncbi_organism_name: Streptomyces caniscabiei

ncbi_submitter: Oregon State University


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Northeastern University


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Ares Genetics


ncbi_isolation_source: fermentation

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine environments

ncbi_organism_name: Neolewinella lacunae

ncbi_submitter: Shandong University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Washington University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Spain: Bilbao

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis dnLKV2

ncbi_submitter: Broad Institute


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: EMG


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Gordonia sp. CPCC 205333

ncbi_submitter: Institute of Medicinal Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. CPCC 205333


ncbi_assembly_level: Chromosome

ncbi_organism_name: Lacticaseibacillus rhamnosus GG

ncbi_strain_identifiers: GG

ncbi_submitter: University of Milan


ncbi_organism_name: Maricaulis salignorans

ncbi_submitter: Ocean University of China


ncbi_organism_name: Brucella canis

ncbi_submitter: Universidad Autonoma de Ciudad Juarez


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Kasetsart University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Gaiellaceae bacterium


ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: TX

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: France: Champenoux

ncbi_organism_name: Paraburkholderia megapolitana

ncbi_submitter: FARE INRA


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_country: Spain: Madrid

ncbi_isolation_source: Human gut

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centro Nacional de Biotecnologia-CSIC


ncbi_isolation_source: Sputum

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Yakult Central Institute


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Tunku Abdul Rahman


ncbi_organism_name: Selenomonadaceae bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Faecalicatena contorta

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Stellaceae bacterium


ncbi_country: Norway

ncbi_isolation_source: freshwater RAS system; circulating water

ncbi_organism_name: Chryseobacterium sp. 3008163

ncbi_submitter: Norwegian University of Life Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: pasteurized milk

ncbi_organism_name: Bacillus mycoides


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China

ncbi_isolation_source: plant

ncbi_organism_name: Pseudomonas chlororaphis YL-1

ncbi_submitter: Jiangsu Institute of Plant Protection


ncbi_organism_name: Flavonifractor plautii DSM 6740

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Poland: Warszawa

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas alloputida

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Capnocytophaga leadbetteri


ncbi_country: India: Arunachal Pradesh

ncbi_isolation_source: sputum

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pig Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: UHT milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCPF17_031

ncbi_submitter: University of California, Irvine


ncbi_isolation_source: plant metagenome

ncbi_organism_name: Trichormus azollae


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Brisbane

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_assembly_name: IMG-taxon 2690315676 annotated assembly

ncbi_organism_name: Paraburkholderia fungorum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Streptococcus agalactiae GB00923

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: China: Guangzhou

ncbi_isolation_source: Cooked chicken

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Chile: Tarapaca; Salar de Huasco; H4 site

ncbi_isolation_source: Sediment sample

ncbi_organism_name: Exiguobacterium sp. SH4S7

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. SH4S7


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-a_bin-490

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Huashan Hospitial of Fudan University


ncbi_organism_name: Bacillus cereus F837/76

ncbi_submitter: Genoscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus F837/76


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Paenibacillus amylolyticus

ncbi_submitter: AIMST University


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine Faeces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_submitter: MPIPZ


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Seattle

ncbi_organism_name: Mycolicibacterium diernhoferi

ncbi_strain_identifiers: Bard

ncbi_submitter: UW


ncbi_country: China: Tian Jin

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: jiangnan


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Bradyrhizobium sp. S3.5.5

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG14293

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Fujian

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_organism_name: Streptomyces violaceus

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 146457

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Acetobacter sp. P1H12_c

ncbi_submitter: Freiburg University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Middle Oconee Water Reclamation; Athens; GA

ncbi_isolation_source: raw waste water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Georgia


ncbi_country: Egypt: Minya; Mallawi

ncbi_isolation_source: root nodules

ncbi_organism_name: Klebsiella variicola

ncbi_strain_identifiers: FR 73

ncbi_submitter: msa univeristy


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Colombia: Valle del Cauca

ncbi_organism_name: Bacillus sp. Nf3

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Nf3


ncbi_country: Taiwan

ncbi_organism_name: Shewanella algae

ncbi_submitter: National Chung Cheng University


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Anderseniibacteriota;x__unclassified Candidatus Anderseniibacteriota;s__Candidatus Anderseniibacteriota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Psychrobacter sp. JCM 18902

ncbi_submitter: The University of Tokyo


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Sulfuricurvum sp. GWF2_44_89

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: soil

ncbi_organism_name: Listeria immobilis

ncbi_submitter: Cornell University


ncbi_organism_name: gamma proteobacterium IMCC1989

ncbi_submitter: Inha university


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Brazil: Santos

ncbi_isolation_source: oysters (Crassostrea spp.)

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: EcMO

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Modernising Medical Microbiology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Thessaly


ncbi_organism_name: Herminiimonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Cellulomonas sp. NPDC057328

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sphingomonadales bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces goshikiensis


ncbi_isolate: AOP1_LA_G1 _bin _2

ncbi_organism_name: Cellulosimicrobium funkei

ncbi_strain_identifiers: AOP1_LA_G1 _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Jiangxi Medical College, Nanchang University


ncbi_organism_name: Planktothrix sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Streptomyces sp. NPDC053542


ncbi_organism_name: Campylobacter lari

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Academia Sinica


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_assembly_name: Rumen uncultured genome RUG11975

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Netherlands

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Brigham Young University


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chthonomonas sp. UBA2407

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola massiliensis


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_country: Brazil: Belo Horizonte;Pampulha lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M20BS1

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Mariniblastus sp.

ncbi_submitter: EPFL


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: EMG


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: BAL

ncbi_submitter: Sapienza University of Rome


ncbi_submitter: Stockholm University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Ohio

ncbi_isolation_source: Built Environment

ncbi_organism_name: Pseudomonas sp. WP001

ncbi_submitter: University of Oklahoma


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bifidobacterium catenulatum


ncbi_country: USA:Washington; Snake River

ncbi_isolation_source: Kidney; diseased chinook salmon

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;s__Flavobacterium columnare;x__Flavobacterium columnare NBRC 100251 = ATCC 23463


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Brown University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Dorea longicatena

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: KAS


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: Belgium

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Liege


ncbi_assembly_name: IMG-taxon 2600255292 annotated assembly

ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Rhodothermaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parablautia intestinalis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Peptoclostridium difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: China: Zhejiang province

ncbi_isolation_source: activated sludge

ncbi_organism_name: Comamonas resistens


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Eugene; Oregon

ncbi_isolation_source: intestine

ncbi_organism_name: Plesiomonas sp. ZOR0011

ncbi_submitter: University of Oregon


ncbi_organism_name: Candidatus Syntrophosphaera sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;x__unclassified Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Intestinimonas sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Intestinimonas;x__environmental samples;s__uncultured Intestinimonas sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ural Scientific Research Institute of Maternity and Child Care


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: India: Maharashtra

ncbi_isolation_source: dairy product

ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_strain_identifiers: BM 25

ncbi_submitter: Agharkar Research Institute


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Human


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella sp. NW90

ncbi_submitter: Sichuan University


ncbi_organism_name: Hydrogenophaga intermedia

ncbi_submitter: Biology Centre CAS


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Harvard Medical School


ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: Spain: Bilbao

ncbi_isolation_source: cheese

ncbi_strain_identifiers: LBMM 887

ncbi_submitter: Instituto Tecnologico Agrario de Castilla y Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,12:d:-


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Russia: Tuva

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Roseobacteraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Streptomyces polyrhachis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: University of California, Santa Barbara

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Helicobacter rodentium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RIFCSPHIGHO2_12_FULL_41_24


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Raleigh; NC

ncbi_isolation_source: Reduced NaCl fermented cucumber spoilage

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: North Carolina State University


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Mexico: Gulf of California; Pescadero Basin

ncbi_isolation_source: Carbonate sample from the crust; 20 m south of Z vent at the Pescadero Basin.

ncbi_organism_name: Candidatus Desulfofervidus auxilii

ncbi_submitter: California Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Thermodesulfobacteriota;c__Candidatus Desulfofervidia;o__Candidatus Desulfofervidales;f__Candidatus Desulfofervidaceae;g__Candidatus Desulfofervidus;s__Candidatus Desulfofervidus auxilii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Desulfofervidia;o__Candidatus Desulfofervidales;f__Candidatus Desulfofervidaceae;g__Candidatus Desulfofervidus;s__Candidatus Desulfofervidus auxilii


ncbi_country: Thailand

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Thailand-Japan Research Collaboration Center on Emerging and Re-emerging infections, Research Institute for Microbial Diseases, Osaka University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_country: Ireland

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Duodenibacillus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: France: Cotes d Armor

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Anses


ncbi_country: USA: Texas

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Texas Health Science Center


ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Syntrophorhabdaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Bosea sp. CCNWLW174

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. CCNWLW174


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Queensland


ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Zeimonas sediminis

ncbi_submitter: Shenzhen university


ncbi_organism_name: Caproicibacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_submitter: SC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Hydrogenibacillus schlegelii

ncbi_submitter: Wageningen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;f__Bacillales Family X. Incertae Sedis;g__Hydrogenibacillus;s__Hydrogenibacillus schlegelii


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: swine facility

ncbi_strain_identifiers: ISU 839

ncbi_submitter: USDA-ARS


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Fish hatchery

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: lungs

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_submitter: department of Crop Science, Technological Educational Institute of Crete

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas cannabina;x__Pseudomonas cannabina pv. alisalensis;x__Pseudomonas cannabina pv. alisalensis str. PSa866


ncbi_country: United Kingdom: Great Yarmouth

ncbi_isolation_source: surface coastal seawater

ncbi_organism_name: Piscirickettsiaceae bacterium

ncbi_submitter: Ocean university of China


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Ibadan, Nigeria


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_country: USA: Saint Louis; MO

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Seattle

ncbi_isolation_source: tissue right shoulder collar membrame

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG39

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Niabella sp.

ncbi_strain_identifiers: labscale reactor_MAG39

ncbi_submitter: TU Delft


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: South Korea

ncbi_isolation_source: Kochujang

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Canada: Calgary

ncbi_isolation_source: chemostat inoculated with river sediment

ncbi_organism_name: Arenimonas sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Roseovarius sp. MMSF_3359

ncbi_submitter: The University of Melbourne


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Nitratiruptor sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Dickeya solani

ncbi_submitter: Institute for integrative biology of the cell


ncbi_country: Peru: Tumbes

ncbi_isolation_source: Hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Programa Nacional de Innovación en Pesca y Acuicultura


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Palmer LTER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: China: Jiangsu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_submitter: SC


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: University of Chicago


ncbi_country: Brazil: Sobradinho

ncbi_isolation_source: aquaculture system

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFMG


ncbi_organism_name: Nitrobacter hamburgensis X14

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: not available

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Morocco: Taza-Al Hoceima-Taounate

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Microbacterium sp. A84

ncbi_submitter: China CDC


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paraburkholderia phytofirmans

ncbi_submitter: University of Illinois at Chicago


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Nitrospirales bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Lachnobacterium sp.


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Utah