ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Australia: Monaro; NSW

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: University of Queensland


ncbi_assembly_level: Contig

ncbi_country: USA

ncbi_isolation_source: WOUND/ABSCESS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Thailand: Phitsanulok

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Faculty of Public Health


ncbi_country: Tanzania: Mara

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


gtdb_representative: t

ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Pelagimonas sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Senegalimassilia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: Yonsei University


ncbi_country: USA: Arizona

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. AZ1_KS37

ncbi_submitter: Emory University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: KAZAKH RESEARCH INSTITUTE OF PROCESSING AND FOOD INDUSTRY


ncbi_country: Sweden

ncbi_isolation_source: VSK

ncbi_organism_name: Mycobacterium tuberculosis BTB05-001

ncbi_submitter: Broad Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: Erwinia persicina


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Zigong

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Thailand: central

ncbi_isolation_source: allelic exchange mutant of Burkholderia thailandensis E264; causing a deletion of the amrR-oprA operon

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Sandia National Laboratories


ncbi_isolation_source: caecum

ncbi_organism_name: Pseudoflavonifractor sp. An44

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: bacterium


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Campylobacter armoricus

ncbi_submitter: Collection de l'Institut Pasteur

ncbi_type_material_designation: assembly from type material


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Ligilactobacillus acidipiscis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Ghana: Northern region

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Noguchi Memorial Institute fir Medical Research


ncbi_isolation_source: rhizosphere soil of watermelon

ncbi_organism_name: Brevibacillus brevis FJAT-0809-GLX

ncbi_submitter: FJAT, Fujian Academy of Agriculture Sciences


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Ruminococcus sp. UBA4310

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Enterenecus faecium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__;g__Candidatus Enterenecus;s__Candidatus Enterenecus faecium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Enterenecus;s__Candidatus Enterenecus faecium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospira eligens

ncbi_submitter: BGI


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Estonia: Tartumaa; Laeva vald

ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: marine

ncbi_organism_name: Spongiibacteraceae bacterium


ncbi_country: China: Ningxia

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Laboratory for Diagnosis and Treatment of Infectious Diseases


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Fish hatchery

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Desulfofustis sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR2034

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P29P

ncbi_submitter: South China Agricultural University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Veillonella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Moritella sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Francisella tularensis subsp. novicida

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_submitter: Boston College


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Austria: Upper Austria; Linz

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_submitter: Yangzhou University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University Hong Kong


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA1658


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0055

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Germany: Goettingen

ncbi_isolation_source: tomato rhizosphere

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: FIOCRUZ


ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: Guangdong Women and Children Hospital


ncbi_isolation_source: feces dairy cow (Bos taurus)

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro;x__Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001673


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA7547

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA7547


ncbi_country: USA: Alaska

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_country: USA: midwestern

ncbi_isolation_source: Manila ropes placed above water tanks and feed bunks used as sampling devices

ncbi_submitter: University of Nebraska-Lincoln

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_country: China: Mianyang

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Costa Rica: Guanacaste Conservation Area

ncbi_isolation_source: pupa

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Variovorax sp. NFACC26

ncbi_submitter: University of the Pacific


ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: FAFU


ncbi_organism_name: Marinobacter sp. DUT-1

ncbi_submitter: Dalian university of technology


ncbi_organism_name: Vulcanimicrobiota bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Purdue University


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-1899

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Manhattan; KS

ncbi_isolation_source: Probiotic

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Kansas State University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Blautia obeum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Beijing

ncbi_isolation_source: vaginal

ncbi_organism_name: Fannyhessea vaginae

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: China: Fujian Province

ncbi_isolation_source: surface water from the Jiulong River at depth of 0m

ncbi_organism_name: Bowmanella sp. JS7-9

ncbi_submitter: Third Institute of Oceanography,State Oceanic Administration


ncbi_organism_name: Corynebacterium belfantii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: vagina

ncbi_organism_name: Atopobium massiliense

ncbi_submitter: URMITE


ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: Newcastle University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: USA: Hanford Site; WA

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonas sp. DVZ24

ncbi_submitter: Howard University


ncbi_submitter: MIT

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis;x__Bacillus subtilis subsp. subtilis str. AG1839


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Zetaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Limnobacter sp.


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: Cow

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: Oral

ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: King's College London


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Hefei

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Caulobacter flavus

ncbi_refseq_category: reference genome

ncbi_submitter: Anhui Agricultural University


ncbi_organism_name: uncultured Myxococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France

ncbi_isolation_source: liver abscess

ncbi_submitter: Monash University


ncbi_country: China

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: City University of Hong Kong


gtdb_type_species_of_genus: t

ncbi_organism_name: Piscibacillus salipiscarius JCM 13188

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Bordetella sp.

ncbi_submitter: EMG


ncbi_submitter: Center for Microbial Communities


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human skin

ncbi_organism_name: Serratia marcescens

ncbi_submitter: NIH/NHGRI


ncbi_country: Spain: Salamanca

ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: Universidad de Salamanca


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_country: Germany: Wietze

ncbi_isolation_source: tar pit sediment

ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: University of Goettingen


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Streptomyces brasiliscabiei

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute


ncbi_country: Spain: Asturias

ncbi_organism_name: Nitrococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Jiangsu

ncbi_submitter: China Agricultural University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Ensifer sp.

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: artisanal lactic starter (for Gruyere de Comte cheese making)

ncbi_organism_name: Lactobacillus johnsonii

ncbi_strain_identifiers: CIRM-BIA 650

ncbi_submitter: Brigham Young University


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Lachnospiraceae bacterium 62-35

ncbi_submitter: Nanjing University


ncbi_organism_name: Streptomyces sp. NRRL WC-3540

ncbi_strain_identifiers: NRRL WC-3540

ncbi_submitter: University of Illinois


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Ningxia Hui Autonomous Region Center for Disease Control and Prevention


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Massachusetts

ncbi_organism_name: Bordetella bronchiseptica 99-R-0433

ncbi_submitter: JCVI


ncbi_isolation_source: marine

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: World Institute of Kimchi


ncbi_country: Kenya: Kisii

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Dog Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC-RRC


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: China: Xi an

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: France

ncbi_isolation_source: cheese (Beaufort)

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 704


ncbi_organism_name: Microbispora sp. ATCC PTA-5024

ncbi_strain_identifiers: ATCC PTA-5024

ncbi_submitter: LAPTOP


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;x__unclassified Candidatus Krumholzibacteriota;s__Candidatus Krumholzibacteriota bacterium


ncbi_country: Spain: Madrid

ncbi_isolation_source: abcess in patient

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: TAILORED-Treatment project


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_organism_name: Corynebacterium matruchotii


ncbi_country: USA: Chicago; Illinois

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Malaya


ncbi_organism_name: Qipengyuania citrea

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Henan

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: USA: NY; New York City

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: USA: OR

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Argentina

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Segatella copri

ncbi_submitter: Stanford University


ncbi_organism_name: Actinomyces bouchesdurhonensis

ncbi_submitter: EMG


ncbi_country: China: Huizhou

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: California; Los Angeles County

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China: Beijing


ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Micromonospora sp. CA-246542

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. ADAK22

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridium butyricum

ncbi_strain_identifiers: NBRC 3315

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Pseudoalteromonas nigrifaciens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Thermodesulfobacteriota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. C3189

ncbi_submitter: Sichuan University


ncbi_organism_name: Nocardia fusca


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Oligoflexia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Linnaeus University


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Dourados

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Sphingomonas paucimobilis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Rahnella variigena

ncbi_submitter: Tsinghua University


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Spirochaetales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli


ncbi_country: Australia: Brisbane

ncbi_isolation_source: uterus

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Massachusetts; Boston

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Streptomyces sp. NPDC048357

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood culture

ncbi_submitter: Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Actinotignum timonense

ncbi_submitter: Capital Region


ncbi_country: New Zealand

ncbi_isolation_source: rectal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Achromobacter insolitus

ncbi_submitter: University of Queensland


ncbi_country: Italy: Lazio; Rome province

ncbi_isolation_source: Apricot

ncbi_organism_name: Pantoea agglomerans

ncbi_strain_identifiers: ISF 438

ncbi_submitter: University of Rome "La Sapienza"


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agriculture University


ncbi_organism_name: Streptomyces nigra


ncbi_country: Pacific Ocean: South China Sea

ncbi_isolation_source: Sea sediment

ncbi_organism_name: Alphaproteobacteria bacterium LMO-S08

ncbi_submitter: Shanghai Jiao tong University


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Ecuador: Quito

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Mesonia mobilis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: University of Nebraska-Lincoln

ncbi_isolation_source: whole bodies

ncbi_organism_name: Emticicia sp.

ncbi_submitter: University of Nebraska-Lincoln


ncbi_organism_name: Candidatus Brocadiia bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;x__unclassified Candidatus Brocadiia;s__Candidatus Brocadiia bacterium


ncbi_organism_name: Acidovorax sp. BLS4

ncbi_submitter: The University of the West Indies


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Sulfitobacter mediterraneus KCTC 32188

ncbi_submitter: Yonsei University


ncbi_country: Mexico: Lake Texcoco

ncbi_isolation_source: freshwater

ncbi_organism_name: Spirulina major CS-329

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_isolation_source: metagenome

ncbi_organism_name: Shigella sp.


ncbi_country: Italy

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium Isolate-104 (HZI)

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Symbiothrix sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Symbiothrix;x__unclassified Candidatus Symbiothrix;s__Candidatus Symbiothrix sp.


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_assembly_name: Rumen uncultured genome RUG12381

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Queensland

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Tenacibaculum maritimum NCIMB 2154

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum;s__Tenacibaculum maritimum;x__Tenacibaculum maritimum NCIMB 2154


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: autopsy brain sample

ncbi_organism_name: Burkholderia pseudomallei MSHR305

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Bern


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: South Korea: Incheon

ncbi_isolation_source: sediment

ncbi_organism_name: Roseithermus sacchariphilus

ncbi_submitter: Korea Institute of Ocean Science & Technology (KIOST)


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Kalgoorlie

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Paenibacillus violae

ncbi_submitter: Dongguk university


ncbi_country: Japan: Hokkaido

ncbi_isolate: Mycoplasma canadense #HAZ360_1

ncbi_isolation_source: cow s milk (ENVO:0010035)

ncbi_organism_name: Metamycoplasma canadense

ncbi_strain_identifiers: Mycoplasma canadense #HAZ360_1;HAZ360_1

ncbi_submitter: National Institute of Animal Health, National Agriculture and Food Research Organization


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita' degli Studi di Milano


ncbi_country: Uruguay: Rocha

ncbi_isolation_source: lymph nodes

ncbi_submitter: Institut Pasteur de Montevideo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: USA: Allegan County; MI

ncbi_isolation_source: Sixteen Lake

ncbi_organism_name: Microcystis aeruginosa SX13-11

ncbi_submitter: University of Michigan


ncbi_country: South Korea: Baekje barrage

ncbi_isolation_source: Cyanobacterial bloom

ncbi_organism_name: Rhizorhabdus phycosphaerae

ncbi_submitter: korea university


ncbi_country: India:Bay of Bengal

ncbi_isolation_source: coastal surface seawate

ncbi_organism_name: Flavobacterium nitratireducens

ncbi_submitter: Inha Univ.


ncbi_country: Thailand


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhodoluna limnophila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Idiomarina abyssalis

ncbi_submitter: University of Queensland


ncbi_organism_name: Arthrobacter sp. GCM10020060

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: China: Shanghai

ncbi_isolation_source: leaves

ncbi_organism_name: Sphingomonas sp. NIC1

ncbi_submitter: Shanghai Jiaotong University


ncbi_organism_name: Chryseobacterium gleum


ncbi_country: Italy

ncbi_isolation_source: rectal swab

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: China: Zhengzhou

ncbi_isolation_source: stool

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_country: USA: IA

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Brazil: Mato Grosso

ncbi_isolation_source: beef

ncbi_submitter: Federal University of Mato Grosso


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: not provided

ncbi_organism_name: Actinomyces oris


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Citrobacter sp. C348

ncbi_submitter: Faculty of Pharmacy, University of Porto


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: CKDBio


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: uncultured Methylomarinum sp.


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: freshwater MAG --- Loc081215-4m_bin-2050

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Hydrogenophilales bacterium 17-61-9


ncbi_organism_name: Christensenellaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG027

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_organism_name: Enterobacter cloacae subsp. dissolvens

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. dissolvens


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Boston; MA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M0025

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterococcus faecalis EnGen0338


ncbi_organism_name: Kitasatospora sp. NPDC007106

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Gallispira edinburgensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallispira;s__Candidatus Gallispira edinburgensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallispira;s__Candidatus Gallispira edinburgensis


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_country: Japan

ncbi_isolation_source: Rhizosphere soil of fern

ncbi_organism_name: Actinorhabdospora filicis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Canada: Manitoba

ncbi_isolation_source: Elbow wound

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_country: Italy: Marche

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Nankai University


ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Pseudomonas sp. B33.4

ncbi_submitter: University of Neuchatel


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Xiehe Shenzhen Hospital of Huazhong University of Science and Technology


ncbi_country: Zambia

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Research Center for Zoonosis Control


ncbi_organism_name: uncultured Megamonas sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: Intrauterine purulent content

ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal University of Rio Grande do Sul (UFRGS)


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_country: New Zealand:Palmerston North

ncbi_isolation_source: Spontaneous mutation of the Escherichia coli laboratory strain JW5503 of the Keio collection

ncbi_submitter: Massey University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Germany: Thuringia

ncbi_isolation_source: Veterinary

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Northumbria University


ncbi_country: USA: Durham; NC

ncbi_isolation_source: urine foley

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Alabama in Huntsville


ncbi_country: China: Hangzhou

ncbi_submitter: Hangzhou First People's hospital


ncbi_country: Jordan

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: gut content

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Qinghai Province

ncbi_isolation_source: trachea

ncbi_organism_name: Corynebacterium sp. zg-331

ncbi_submitter: China CDC


ncbi_country: China

ncbi_isolation_source: faece

ncbi_submitter: Yangzhou University


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Cryobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides faecis


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Flaviramulus sp.

ncbi_submitter: Linnaeus University


ncbi_organism_name: Mesotoga sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: wastewater

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: China: Nantong; Jiangsu province

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_organism_name: uncultured Psychroserpens sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_isolation_source: human gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Candidatus Eremiobacter antarcticus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Candidatus Eremiobacterales;f__Candidatus Eremiobacteraceae;g__Candidatus Eremiobacter;s__Candidatus Eremiobacter antarcticus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Candidatus Eremiobacterales;f__Candidatus Eremiobacteraceae;g__Candidatus Eremiobacter;s__Candidatus Eremiobacter antarcticus


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium RIFCSPHIGHO2_12_FULL_55_11


ncbi_organism_name: Serratia symbiotica str. Tucson

ncbi_strain_identifiers: Tucson

ncbi_submitter: The University of Arizona


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: poultry meat product

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_country: India: vadodara

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_country: USA: University of Nebraska-Lincoln

ncbi_isolation_source: whole bodies

ncbi_organism_name: Hydromonas sp.

ncbi_submitter: University of Nebraska-Lincoln


ncbi_organism_name: Sulfurimonas sp. SAG-AH-194-L11

ncbi_submitter: The Third Institute of Oceanography, Ministry of Natural Resources


ncbi_assembly_name: IMG-taxon 2521172670 annotated assembly

ncbi_organism_name: Pseudomonas sp. LAIL14HWK12:I8

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Ghana

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Segatella oulorum

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Terrestrial

ncbi_organism_name: Calothrix membranacea FACHB-236

ncbi_submitter: South China Normal University


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Guinea-Bissau

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_country: Gabon

ncbi_organism_name: Bifidobacterium moukalabense

ncbi_submitter: National Institute of Genetics


ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Chthonomonadales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Faecalibacterium hattorii

ncbi_submitter: UIUC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Singapore General Hospital


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_submitter: National Health Research Institutes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_organism_name: Pirellula sp.

ncbi_submitter: EPFL


ncbi_organism_name: Mesomycoplasma hyopneumoniae

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: CORNELL UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_country: France: Villejuif

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus hirae


ncbi_organism_name: Bacillota bacterium


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: zooplankton

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: EMG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: Max Planck Institute for Evolutionary Biology


ncbi_assembly_name: IMG-taxon 2636416057 annotated assembly

ncbi_organism_name: Pseudomonas sp. 43mfcvi1.1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Rhodobacteraceae bacterium UBA6197

ncbi_submitter: University of Queensland


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Herpetosiphonaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Germany

ncbi_organism_name: Paracoccus contaminans

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: The First Hospital of Jilin University


ncbi_country: United Kingdom

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: MO

ncbi_isolation_source: air sac

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of Missouri


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Methyloceanibacter sp.


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: river water

ncbi_submitter: Centre pasteur du Cameroun


ncbi_country: USA

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Tsinghua University


ncbi_assembly_name: IMG-taxon 2615840644 annotated assembly

ncbi_organism_name: Methylobacterium sp. yr596

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Yushu Tibetan Autonomous Prefecture; Qinghai Province

ncbi_organism_name: Acinetobacter sp. BY484

ncbi_submitter: icdc


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Kangwon National University


ncbi_organism_name: Meridianimaribacter flavus

ncbi_submitter: Xiamen University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_strain_identifiers: KCTC 3548

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Secundilactobacillus;s__Secundilactobacillus malefermentans;x__Secundilactobacillus malefermentans DSM 5705 = KCTC 3548


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Limosilactobacillus agrestis

ncbi_submitter: University of Alberta


ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Shanxi University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil

ncbi_submitter: Wellcome Trust Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum;x__Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of La Rioja


ncbi_country: Colombia: Antioquia

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Mozambique

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Russia

ncbi_isolation_source: polar sea water

ncbi_organism_name: Octadecabacter sp. SW4

ncbi_submitter: National Marine Biodiversity Institute of Korea


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Gilvibacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Fusobacterium naviforme


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Elusimicrobiales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Peking

ncbi_organism_name: Clostridium tetani

ncbi_strain_identifiers: ATCC 453

ncbi_submitter: FDA, Center for Biologics Evaluation and Research


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Joint Microbiome Facility

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium CG22_combo_CG10-13_8_21_14_all_32_8


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Azospirillum sp. RU38E

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Iran: Persian Gulf; Khark

ncbi_isolation_source: marine surface water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Carson; CA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: France

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_country: China: Henan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Luteimonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: FL; Biscayne National Park

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pseudoalteromonas sp. OF7H-1

ncbi_submitter: Meyer Microbes Lab


ncbi_country: USA: Fayetteville AR

ncbi_isolation_source: Grower Feed

ncbi_organism_name: Kosakonia cowanii

ncbi_submitter: Pittsburg State University


ncbi_country: South Africa: Pretoria

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pretoria


ncbi_organism_name: Capnocytophaga gingivalis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_country: Peru

ncbi_isolation_source: biological fluid or tissue

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Anania hortulata


ncbi_country: United Kingdom:London

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: University of Georgia


ncbi_country: Czech Republic

ncbi_isolation_source: clinical material

ncbi_organism_name: Enterobacter cloacae complex sp.

ncbi_submitter: Veterinary Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp.


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Ausgem


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter baumannii ABNIH4

ncbi_submitter: NIH Intramural Sequencing Center


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Bauldia sp.

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_isolation_source: Uterus

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Hospital Universitario Son de Espases (Palma de Mallorca)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG14816

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Shanghai

ncbi_isolation_source: soil

ncbi_organism_name: Aerococcus agrisoli

ncbi_submitter: Shanghai Academy of Agricultural Sciences


ncbi_country: Malaysia

ncbi_isolation_source: Compost

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Malaya


ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Anaerovibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Thauera aminoaromatica

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site A

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Niallia circulans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0754

ncbi_submitter: Broad Institute


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli


ncbi_country: Denmark

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Roseovarius sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: dog

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Micromonospora matsumotoense

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: Sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Drexel University College of Medicine


ncbi_country: China

ncbi_isolation_source: environmental swabs

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Liver of rodent

ncbi_organism_name: Bartonella gabonensis

ncbi_submitter: URMITE


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: metabat2_coassembly_bwa.97 MAG

ncbi_strain_identifiers: metabat2_coassembly_bwa.97 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Stenotrophomonas sp.


ncbi_country: Austria

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: The Genome Institute at Washington University


ncbi_assembly_name: Rumen uncultured genome RUG10894

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: tomato rhizosphere

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Hangzhou

ncbi_isolation_source: Abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Saudi Arabia: Thuwal

ncbi_isolation_source: reverse osmosis membrane

ncbi_organism_name: Bacillus sp. RO3

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RO3


ncbi_country: India: Kolkata

ncbi_isolation_source: clinical sample

ncbi_submitter: National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Enterococcus pseudoavium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPLOWO2_01_FULL_38_21


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: microbes were collected at JL-Dive100-S03

ncbi_organism_name: Cocleimonas sp.

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_organism_name: Bradyrhizobium sp. SZCCHNRI3042

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Taiwan: Taoyuan City

ncbi_isolation_source: vaginal swabs

ncbi_organism_name: Limosilactobacillus portuensis

ncbi_submitter: Ming Chuan University


ncbi_isolate: S66 bin 1

ncbi_organism_name: Nostoc sp.

ncbi_strain_identifiers: S66 bin 1

ncbi_submitter: Duke University


ncbi_organism_name: Xanthomonas campestris pv. olitorii

ncbi_strain_identifiers: NCPPB 464

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: South Africa

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Institute of Environmental Science and Research (ESR)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Bacteroidales bacterium UBA1736

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1736


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Salinibacter sp.

ncbi_submitter: Diversite, Ecologie et Evolution Microbienne, Unite Ecologie Systematique et Evolution


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Monash University


ncbi_isolate: AOP6_C1_surf _bin _7

ncbi_organism_name: Leuconostoc falkenbergense

ncbi_strain_identifiers: AOP6_C1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Ignavibacteriales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: Streptococcus canis

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_organism_name: Streptococcus mutans

ncbi_strain_identifiers: Xc

ncbi_submitter: University of Kentucky


ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Cornell University


ncbi_organism_name: Rahnella aceris

ncbi_submitter: University of British Columbia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Weissella koreensis

ncbi_submitter: Daesang


ncbi_organism_name: Flavobacterium sp. W22_SRS_FP1

ncbi_submitter: United States Naval Academy


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Nanoarchaeia archaeon

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;p__Nanobdellota;c__Candidatus Nanoarchaeia;x__unclassified Candidatus Nanoarchaeia;s__Candidatus Nanoarchaeia archaeon


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Merdivivens pullistercoris

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__Muribaculaceae incertae sedis;g__Candidatus Merdivivens;s__Candidatus Merdivivens pullistercoris


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bifidobacterium indicum


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSUF


ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Mars Odyssey spacecraft

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Lysinibacillus;s__Lysinibacillus odysseyi;x__Lysinibacillus odysseyi 34hs-1 = NBRC 100172


ncbi_country: USA: KS

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Hydrogenophilus thermoluteolus

ncbi_strain_identifiers: thermoluteolus

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: China

ncbi_organism_name: Bradyrhizobium yuanmingense CCBAU 05623

ncbi_strain_identifiers: CCBAU 05623

ncbi_submitter: China Agricultural University


ncbi_isolate: Clostridium perfringens

ncbi_isolation_source: salt beef

ncbi_organism_name: Clostridium perfringens NCTC 8239

ncbi_strain_identifiers: Clostridium perfringens;NCTC 8239

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_submitter: University of Basel


ncbi_isolation_source: human gut

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: The REHAB Consortium


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Thermoflavifilum sp.

ncbi_submitter: Research Center of Biotechnology


ncbi_country: Ghana: Nima Market; Accra

ncbi_isolation_source: wagashi (unripened soft cheese)

ncbi_strain_identifiers: NRWCIB

ncbi_submitter: Alborada Research Fund

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Legon


ncbi_isolation_source: secretion

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: Sea Chest

ncbi_organism_name: Vibrio furnissii

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Beitun;Xinjiang

ncbi_isolation_source: Prepared meat products from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Texas

ncbi_organism_name: Chryseobacterium shigense

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Intestinimonas sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Intestinimonas;x__environmental samples;s__uncultured Intestinimonas sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Uganda

ncbi_organism_name: Mycobacterium sp. ACS4054

ncbi_submitter: JCVI


ncbi_country: Bahamas: Nassau

ncbi_isolation_source: soil

ncbi_organism_name: Stackebrandtia nassauensis DSM 44728

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: South Korea: Chungju Lake

ncbi_isolation_source: freshwater

ncbi_organism_name: Leeia aquatica

ncbi_submitter: Inha University


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis TX1302

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Tang lab