ncbi_country: Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Tara Oceans Consortium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_assembly_level: Scaffold

ncbi_country: USA

ncbi_isolation_source: Salami

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Tufts University


gtdb_representative: t

ncbi_organism_name: uncultured Conexibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_level: Chromosome

ncbi_isolation_source: swab

ncbi_organism_name: Treponema pallidum

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_organism_name: Rectinema sp.

ncbi_submitter: University of Iowa


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: UIUC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Anaerovibrio lipolyticus LB2005

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Spirillospora sp. CA-142024

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Ningbo

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ningbo First Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestonebacteria bacterium RIFOXYD2_FULL_39_29


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of California Davis


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: geothermally-influenced stream

ncbi_organism_name: Fischerella thermalis WC245

ncbi_submitter: University of Montana


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA56348

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Pseudomonas sp. AM14(2022)

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_organism_name: Prevotella lacticifex

ncbi_submitter: Advanced Analysis Center, National Agriculture and Food Research Organization


ncbi_country: USA: FL

ncbi_submitter: University of Florida


ncbi_organism_name: Mycolicibacterium septicum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-4

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Opitutaceae bacterium

ncbi_strain_identifiers: new MAG-4

ncbi_submitter: Micoorganism


ncbi_country: Haiti

ncbi_isolation_source: stool sample from patient with cholera

ncbi_organism_name: Vibrio cholerae O1 str. 2011EL-1133

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. 2011EL-1133


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bryobacterales bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Romboutsia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Switzerland

ncbi_isolation_source: placenta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_isolation_source: Caecum


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: China: Beijing

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Russia: Nakhodka; the Sea of Japan

ncbi_isolation_source: coastal sediment

ncbi_organism_name: Cobetia sp. 2AS1

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry (PIBOC)


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides pyogenes;x__Bacteroides pyogenes DSM 20611 = JCM 6294

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Nonomuraea sp. B10E15

ncbi_submitter: Ondokuz Mayis university


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli


ncbi_country: Antarctica

ncbi_isolation_source: Marine water

ncbi_organism_name: Massilia sp. Dwa41.01b

ncbi_submitter: Network for Extreme Environment Research


ncbi_country: USA: Michigan

ncbi_organism_name: Rhodococcoides corynebacterioides

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany

ncbi_isolation_source: meat

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: AOP34_AQ2_surf _bin _12

ncbi_organism_name: Ruoffia tabacinasalis

ncbi_strain_identifiers: AOP34_AQ2_surf _bin _12

ncbi_submitter: Genoscope


ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: Tokyo University of Science


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Louis Hospital


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Methylomarinum sp.


ncbi_strain_identifiers: LSR1 (Acyrthosiphon pisum)

ncbi_submitter: International Aphid Genomics Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Buchnera;s__Buchnera aphidicola;x__Buchnera aphidicola (Acyrthosiphon pisum);x__Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)


ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_country: United Kingdom

ncbi_isolation_source: Adenoid

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Newcastle University


ncbi_submitter: SRCAMB


ncbi_country: USA: Alaska

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Faecalimonas umbilicata

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Evtepia excrementipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;s__Candidatus Evtepia excrementipullorum


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Kitasatospora sp. NPDC056789

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Pseudomonas promysalinigenes

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Reinekea sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Dallas; TX

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_country: Canada: Nunavut; Northern Canada; Cambridge Bay

ncbi_isolate: CAM bin13

ncbi_isolation_source: soil

ncbi_strain_identifiers: CAM bin13


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-06382

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: BILS


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AM88-24TA

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_country: Brazil: SP; Rio Claro

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_submitter: CRC AquaDiva


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Milwaukee; Wisconsin

ncbi_isolation_source: beach water

ncbi_submitter: University of Wisconsin-Milwaukee


ncbi_country: USA: Toombs Co. GA

ncbi_isolation_source: seedling

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India: Madhya Pradesh; Sehore; Mographool

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: ACVEJ

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Stomatobaculum longum

ncbi_refseq_category: reference genome

ncbi_submitter: Broad Institute


ncbi_country: Japan: Kanita-machi; Aomori Pref.

ncbi_organism_name: Pseudomonas coronafaciens pv. oryzae

ncbi_strain_identifiers: ICMP 9095

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. oryzae


ncbi_isolation_source: extravasate fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_isolation_source: Distal colon


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli O25b:H4

ncbi_submitter: Public Health Agency of Sweden


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: stool sample

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: cornea

ncbi_organism_name: Moraxella sp. K1664

ncbi_submitter: Lycoming College


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Escherichia coli B921


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: Denmark

ncbi_isolation_source: eel tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Culturomica massiliensis

ncbi_submitter: EMG


ncbi_country: USA: NY

ncbi_isolation_source: dog

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Klebsiella pneumoniae


ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Australia: Mount Bold Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Dolichospermum circinale CS-537/11

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Saccharopolyspora cebuensis

ncbi_submitter: University of Lagos


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site C

ncbi_isolation_source: Beach sand

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab


ncbi_country: China

ncbi_isolation_source: secretions

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Weissella viridescens

ncbi_submitter: Shanghai Majorbio


ncbi_isolation_source: Poultry

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thalassolituus sp. UBA2109

ncbi_submitter: University of Queensland


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: EMG


ncbi_isolation_source: bulk milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Zurich


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus SCLE6029

ncbi_submitter: Broad Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: wound drainage fluid

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_country: China: Qinghai province; Yushu; Hoh Xil

ncbi_organism_name: Streptococcus chenjunshii

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Salmonella sp. M241


ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: University of Connecticut; Storrs; CT

ncbi_isolation_source: digestive tract

ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: University of Connecticut Graf Lab


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 124


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Alistipes senegalensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Pseudomonas sp. MEJ108

ncbi_submitter: University of Chicago


ncbi_organism_name: Cycloclasticus sp.

ncbi_submitter: University of Califronia, Santa Barbara


ncbi_genome_category: derived from single cell

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_isolation_source: faeces of chicken

ncbi_organism_name: Bifidobacterium pullorum

ncbi_submitter: Northeast Agricultural University


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella pneumoniae subsp. ozaenae

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. ozaenae


ncbi_country: Guatemala

ncbi_organism_name: Shigella dysenteriae WRSd5

ncbi_submitter: Igenbio Inc


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HANYANG UNIVERSITY


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of three-weeks old elephant

ncbi_organism_name: Synergistaceae bacterium UBA1704

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Institute of Environmental Science and Research


ncbi_submitter: Monash University


ncbi_organism_name: Undibacterium sp. TC4M20W

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: [Clostridium] leptum


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Candidatus Onthomonas sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Onthomonas;x__unclassified Candidatus Onthomonas;s__Candidatus Onthomonas sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of South Florida


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human gut


ncbi_organism_name: Saccharopolyspora sp. NPDC050389

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_submitter: University of Texas at Austin


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: China: Changchun city

ncbi_submitter: Jilin Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Bdellovibrionaceae bacterium UBA6543

ncbi_submitter: University of Queensland


ncbi_country: Argentina

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Mexico: Morelos; Las Estacas River

ncbi_isolation_source: river sediment

ncbi_organism_name: Stenotrophomonas sp. ESTM1D_MKCIP4_1

ncbi_submitter: Centro de Ciencias Genomicas - UNAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Stenotrophomonas;x__Stenotrophomonas maltophilia group;x__unclassified Stenotrophomonas maltophilia group;s__Stenotrophomonas sp. ESTM1D_MKCIP4_1


ncbi_organism_name: Sphingobium abikonense

ncbi_submitter: Xiamen University


ncbi_country: Antarctica

ncbi_isolation_source: coastal sea-ice

ncbi_organism_name: Gelidibacter algens

ncbi_strain_identifiers: ACAM 536

ncbi_submitter: University of Tasmania


ncbi_country: Turkey

ncbi_isolation_source: chicken

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Conexibacteraceae bacterium


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R805;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Vibrio owensii

ncbi_submitter: University of Miyazaki


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Qingdao University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Idiomarina sp.

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: San Nicolas de los Garza Nuevo Leon

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: CBG Instituto Politecnico Nacional


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: China

ncbi_isolation_source: Ascites

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical University


ncbi_assembly_name: freshwater MAG --- Loclat_bin-17204

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Hyphomonadaceae bacterium UBA1933

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Lebanon

ncbi_isolation_source: skin

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Anaerococcus sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Japan: Kanagawa

ncbi_isolation_source: water

ncbi_organism_name: Nocardioides sp. S5

ncbi_submitter: The University of Tokyo


ncbi_country: USA: Carlsbad Caverns; New Mexico

ncbi_organism_name: Streptomyces sp. AC602_WCS936

ncbi_submitter: University of New Mexico


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Holdemanella sp.

ncbi_submitter: The University of Queensland


ncbi_assembly_name: Escherichia coli CVM N36225PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N36225PS

ncbi_submitter: FDA


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_isolation_source: head of leptocephalus larvae of the Japanese eel

ncbi_organism_name: Aureispira anguillae

ncbi_submitter: Laboratory of Fish Diseases, Faculty of Veterinary Medicine, Okayama University of Science


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: BGI


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: India: Punjab

ncbi_isolation_source: Rice seed

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-PB2

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_country: Nigeria

ncbi_isolation_source: Clinical wounds

ncbi_submitter: Igbinedion University Okada


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: KEMRI


ncbi_country: USA: Temple; TX

ncbi_isolation_source: wound

ncbi_submitter: Central Texas Veterans Health Care System


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sediminicola sp. 1XM1-17

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Norway

ncbi_isolation_source: tail

ncbi_organism_name: Tenacibaculum piscium

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Malawi: Blantyre

ncbi_strain_identifiers: BKQECT

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: urine

ncbi_organism_name: Leclercia sp. Colony189

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-1717

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_country: Germany

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: ROBERT KOCH INSTITUT


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1458

ncbi_submitter: Broad Institute


ncbi_assembly_name: IMG-taxon 2609459726 annotated assembly

ncbi_organism_name: Arthrobacter sp. ov118

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: Canada: Ontario

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Caulobacter sp. 12-67-6


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Actinomycetota bacterium


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Hyphomonas sp. UBA4484

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: Friedrich-Schiller University Jena


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_organism_name: Bosea thiooxidans

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Streptomyces sp. NPDC005930

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Micromonospora sp. JCM 30529

ncbi_submitter: Hunan University of Science and Technology


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC058107


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_assembly_name: IMG-taxon 2708742473 annotated assembly

ncbi_organism_name: Microbacterium sp. RU33B

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Pelomonas parva

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_country: Mali

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: IL; Urbana

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. MMG1121

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Chile

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: China: Henan

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_country: Denmark

ncbi_isolation_source: Milk

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Chr. Hansen


ncbi_country: USA

ncbi_isolation_source: swine facility

ncbi_strain_identifiers: ISU 996

ncbi_submitter: USDA-ARS


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Gammaproteobacteria bacterium UBA4443

ncbi_submitter: University of Queensland


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptomyces sp. NPDC000351

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Poland: Radom

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Collierbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;x__unclassified Candidatus Collierbacteria;s__Candidatus Collierbacteria bacterium


ncbi_country: USA: Missouri

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Technical University of Denmark


ncbi_country: Poland

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Chlamydia abortus

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Netherlands

ncbi_isolation_source: feces from hospitalized patient

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens

ncbi_strain_identifiers: Carlos 1

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_organism_name: Acinetobacter baumannii 45002_5

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HANYANG UNIVERSITY


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_country: India

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. punicae

ncbi_submitter: CSIR-Institute of Microbial Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. punicae


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: OK

ncbi_isolation_source: feces (Sus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Burkina Faso

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: University of Florida


ncbi_country: United Kingdom: Scotland; Glasgow

ncbi_isolation_source: Scottish heroin user

ncbi_organism_name: Bacillus anthracis str. Heroin Ba4599

ncbi_strain_identifiers: Heroin Ba4599

ncbi_submitter: Northern Arizona University, USA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. Heroin Ba4599


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Weeksellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Hunan

ncbi_isolation_source: brain and liver

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridium sp. CAG:217

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Environmental; Gladiolus sp.

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_isolate: Anabaena CCY 9402-a

ncbi_organism_name: Anabaena sp. CCY 9402-a

ncbi_strain_identifiers: Anabaena CCY 9402-a

ncbi_submitter: royal netherlands institute for sea research (nioz)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Anabaena;x__unclassified Anabaena;s__Anabaena sp. CCY 9402-a


ncbi_organism_name: Coprobacter fastidiosus


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Queensland


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Alysiella crassa

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_country: Italy: Onifai

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_organism_name: Embleya hyalina

ncbi_submitter: Biological Resource Center


ncbi_isolation_source: throat

ncbi_organism_name: Ewingella americana

ncbi_strain_identifiers: CCUG 14506T

ncbi_submitter: University of Gothenburg - CCUG


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Switzerland: Geneva

ncbi_organism_name: Pseudomonas graminis

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: NPS

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: MER 116

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ornithinimicrobium sp.


ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Salmonella sp. NW116

ncbi_submitter: Sichuan University


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Japan

ncbi_isolation_source: feces; 2 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Dorea longicatena

ncbi_submitter: bioBiome, Inc.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bartonella alsatica IBS 382

ncbi_strain_identifiers: IBS 382

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pseudolabrys sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Beijing city

ncbi_submitter: Tianjin Genskey Medical Technology Co., Ltd


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Ukraine: Kyiv

ncbi_isolation_source: Rhizosphere of wheat

ncbi_organism_name: Pseudarthrobacter oxydans

ncbi_submitter: University of Southern Mississippi


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Parma


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Helicobacter pullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Trichococcus flocculiformis

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Pacific Ocean: Munida Microbial Observatory Time Series

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Monash University


ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: Intra-abdominal infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Clinical; cystic fibrosis patient

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Australia

ncbi_organism_name: Streptomyces sp. LUP30

ncbi_submitter: i3S, University of Porto


ncbi_isolation_source: lake water

ncbi_organism_name: Microcystis aeruginosa

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Zhejiang

ncbi_isolation_source: root

ncbi_organism_name: Herbaspirillum rubrisubalbicans

ncbi_submitter: Zhejiang University


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Candidatus Fimivivens faecavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivivens;s__Candidatus Fimivivens faecavium


ncbi_organism_name: Nocardiopsis alba

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA

ncbi_isolation_source: tissue

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis str. 3999B T(B) 6


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: University Hospital Frankfurt


ncbi_country: China

ncbi_isolation_source: sanies

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: marine

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: lichen metagenome

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Alabama

ncbi_isolation_source: plaque

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AF25-38AC

ncbi_submitter: BGI


ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Amoebophilaceae;g__Candidatus Cardinium;x__unclassified Candidatus Cardinium;s__Cardinium endosymbiont of Encarsia pergandiella;x__Cardinium endosymbiont cEper1 of Encarsia pergandiella


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Australia: Melbourne

ncbi_isolation_source: other

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Mesorhizobium sp. M0092

ncbi_submitter: Washington State University


ncbi_submitter: Nanyang Technological University


ncbi_country: USA:Riverside; California

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: USDA


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_country: Germany

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Amsterdam

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Canada

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Minnesota


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Talassica


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Germany: Tubingen

ncbi_isolation_source: nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Heidelberg


ncbi_country: China: Huizhou

ncbi_isolation_source: catheter

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_organism_name: Pseudomonas aeruginosa BWH051

ncbi_submitter: Broad Institute


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas sp. 2835

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Lake Oneida sediments

ncbi_isolation_source: University of Oregon

ncbi_organism_name: Shewanella oneidensis MR-1

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: INRA


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Chitinophaga ginsengisegetis

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_country: Indonesia

ncbi_isolation_source: young leaves

ncbi_organism_name: Xanthomonas euvesicatoria pv. eucalypti

ncbi_submitter: Univeristy of Florida


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: tonsil swab

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Candidatus Phosphoribacter hodrii

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium RIFCSPLOWO2_02_FULL_48_19


ncbi_country: Bangladesh

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University


ncbi_country: USA: Atlanta

ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae MIA_2011_05-16

ncbi_submitter: Read Laboratory, Emory University


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_isolation_source: Maize rhizosphere

ncbi_organism_name: Pseudomonas lurida

ncbi_strain_identifiers: PGSB 3962

ncbi_submitter: KU Leuven


ncbi_isolation_source: bioreactor

ncbi_organism_name: Clostridiales bacterium UBA1346

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Treponema porcinum

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Salmonella sp. NW29

ncbi_submitter: Sichuan University


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Pseudomonas sp. 22526

ncbi_submitter: Yantai University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Salmonella sp. C3307


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Zhejiang

ncbi_isolation_source: umbilical cord blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_assembly_name: freshwater MAG --- MJ120827B_bin-292

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Pseudoxanthomonas sacheonensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Abiotrophia sp.

ncbi_submitter: EMG


ncbi_country: USA: California

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: Washington State University Vancouver


ncbi_strain_identifiers: CFBP 6626

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Agrobacterium;x__Agrobacterium tumefaciens complex;s__Agrobacterium genomosp. 5;x__Agrobacterium genomosp. 5 str. CFBP 6626


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_country: India

ncbi_isolation_source: feces


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Sneathiellaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_submitter: Colorado State University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef carcass

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_submitter: University of Alberta


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: MA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Spain: Madrid

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Cystic fibrosis patient

ncbi_organism_name: Pandoraea captiosa

ncbi_submitter: LM-UGent


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Klebsiella variicola CAG:634

ncbi_submitter: DTU


ncbi_organism_name: uncultured Ottowia sp.

ncbi_submitter: EMG


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- VK3_bin-0348

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: South Dakota State University


ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Instituto de Biotecnologia


ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas sp. GD03882

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: China: tianjin

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Tianjin University of Traditional Chinese Medicine


ncbi_isolation_source: subcutaneous granuloma

ncbi_organism_name: Mycobacterium haemophilum DSM 44634

ncbi_submitter: Uppsala University


ncbi_organism_name: Segatella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0110R

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not available: to be reported later

ncbi_submitter: SC


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Kenya

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_strain_identifiers: ICMP 5019

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_country: China: Beijing

ncbi_isolation_source: spoiled flesh

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: china agricultural university


ncbi_organism_name: Erythrobacter sp. EC-HK427

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_submitter: Yangzhou University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia marmotae

ncbi_submitter: Stanford University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_submitter: University of Zurich


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Seoul National University Children's Hospital


ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Missouri; Kansas City

ncbi_isolation_source: Rectal fecal grab samples from a commercial feedlot

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Colorado State University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Lactovum miscens


ncbi_country: Colombia

ncbi_isolation_source: blood

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: National Institute of Health, Portugal


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL


ncbi_country: Czech Republic

ncbi_isolation_source: hexachlorocyclohexane-contaminated soil

ncbi_organism_name: Sphingobium baderi LL03

ncbi_submitter: CSIRO


ncbi_country: China: Jiangsu

ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NORHED grant


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection


ncbi_isolation_source: Sputum of Homo sapiens

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Gordonibacter pamelaeae

ncbi_submitter: University of California, Berkeley


ncbi_country: China:Guangdong province

ncbi_isolation_source: intestine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: South China Agricultural University


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Chitinibacteraceae bacterium HSL-7

ncbi_submitter: Guangxi Academy of Sciences


ncbi_isolate: AOP36_B1_surf _bin _11

ncbi_organism_name: Marinobacter sp.

ncbi_strain_identifiers: AOP36_B1_surf _bin _11

ncbi_submitter: Genoscope


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_strain_identifiers: SCPM-O-B-13130 (VVolg)

ncbi_submitter: SRCAMB


ncbi_organism_name: Staphylococcus ureilyticus

ncbi_submitter: Vanderbilt University Medical Center


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: CSF or blood culture

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: USA

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Icahn School of Medicine


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_organism_name: Puia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Russia: Tomsk region of western Siberia

ncbi_isolation_source: microbial mat formed in a wooden bath filled with hot water emerging from a 2775 m-deep well

ncbi_organism_name: Ornatilinea apprima

ncbi_submitter: California Institute of Technology


ncbi_organism_name: uncultured Rhodobiaceae bacterium


ncbi_organism_name: Kineosporiaceae bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: Phyllobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.


ncbi_country: China: South China Sea

ncbi_isolation_source: fluid

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: USA: Tift Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: cold seep

ncbi_organism_name: Thiomargarita sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Bacillus smithii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Helicobacter canadensis

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: Connecticut; Bridgeport

ncbi_organism_name: Legionella pneumophila subsp. fraseri

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Imported/domestic retail Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Cloacibacillus porcorum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Methylopumilus sp1 AM_0507

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Plantactinospora veratri

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Arizona

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_country: USA: Florida

ncbi_isolation_source: Coyote feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: old fermentation pit

ncbi_organism_name: Clostridium liquoris

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_assembly_name: Aliivibrio sp. strain EL58

ncbi_isolate: Aliivibrio sp. strain EL581

ncbi_isolation_source: Gorgonian coral

ncbi_organism_name: Aliivibrio sp. EL58

ncbi_strain_identifiers: Aliivibrio sp. strain EL581

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptococcus suis

ncbi_strain_identifiers: Transconjugant cSFJ45

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Italy: Potenza

ncbi_isolation_source: fermented table olives

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: IGA Technology Services Srl


ncbi_country: Germany: Volcanic Eifel; Andernach

ncbi_isolation_source: groundwater from cold water geyser; filtered on 0.1um pore size filters

ncbi_organism_name: Xanthomonas sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: packaged pickles

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_strain_identifiers: ATCC 29213 WalK revertant

ncbi_submitter: Shenzhen people's hospital


ncbi_submitter: Christian Medical College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Turicimonas muris

ncbi_submitter: Geneva University Hospitals


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Paraprevotella stercoravium

ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Thomasclavelia sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Peru:Loreto; Peruvian Amazon; Santo Tomas

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: Center for Gut Microbiome and Nutrition Research, Washington University School of Medicine


ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_submitter: University of Guelph


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 541915

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0298942.7

ncbi_submitter: IGS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Singapore

ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tan Tock Seng Hospital


ncbi_isolate: wild type

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA/ARS/National Animal Disease Center


ncbi_organism_name: Actinomyces graevenitzii

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_submitter: University of Wyoming


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: University of California Berkeley


ncbi_isolation_source: Corneal Scaping

ncbi_organism_name: Pseudomonas aeruginosa BL10

ncbi_submitter: Broad Institute


ncbi_country: China: Tianjin

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: India: Iewduh; Shillong

ncbi_isolation_source: Poultry feces

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium GW2011_GWC2_42_27


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA5944


ncbi_country: Japan: Nagoya

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Imported/domestic retail Oyster

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_country: Lebanon

ncbi_organism_name: Brucella sp. CMUL 029

ncbi_strain_identifiers: CMUL 029

ncbi_submitter: LAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;x__unclassified Brucella;s__Brucella sp. CMUL 029


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lentilactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_organism_name: Proteus terrae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy: Sicily

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northumbria University


ncbi_organism_name: Paenibacillus thiaminolyticus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: FL; Looe Key

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pseudoalteromonas sp. CNC9-20

ncbi_submitter: Meyer Microbes Lab


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0893

ncbi_submitter: Broad Institute


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Salmonella sp. 741265060_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Armatimonadia bacterium


ncbi_organism_name: Streptomyces parvus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces griseus


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Veterinary Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG12035

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE