ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Michigan


gtdb_representative: f

gtdb_type_species_of_genus: t

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Haoranjiania flava

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Amycolatopsis sp. NPDC051758

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hormaechei


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Flavobacterium sp.


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Pseudidiomarina aquimaris

ncbi_submitter: Ocean University of China


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Jiangsu Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China:East Sea

ncbi_isolation_source: natural biofilms

ncbi_organism_name: Shewanella marisflavi

ncbi_submitter: Shanghai Ocean University


ncbi_country: Czech Republic: Trebon

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Blastomonas sp. AAP25

ncbi_submitter: Institute of Microbiology, ASCR


ncbi_assembly_name: Burkholderia sp. LMG 29319

ncbi_isolation_source: soil

ncbi_organism_name: Caballeronia temeraria

ncbi_refseq_category: reference genome

ncbi_submitter: LM-UGent


ncbi_isolation_source: marine

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: skin

ncbi_organism_name: Rothia kristinae

ncbi_submitter: Institute of Pharmacy and Molecular Biotechnology


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: soil in warm; humid forested area with dark clay soils (5 cm deep)

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: Rumen uncultured genome RUG10853

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_assembly_name: Rumen uncultured genome RUG14911


ncbi_country: Italy: Florence

ncbi_isolation_source: nasal swab

ncbi_submitter: University of Trento


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_country: Argentina

ncbi_isolation_source: Screening

ncbi_organism_name: Escherichia coli

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_country: USA

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_country: South Africa

ncbi_isolation_source: water

ncbi_submitter: University of Pretoria


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 173

ncbi_submitter: Oregon State University


ncbi_assembly_name: Salmonella enterica CVM 43835 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Streptomyces bluensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Variibacter gotjawalensis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cubana


ncbi_isolation_source: blood

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thalassolituus sp. UBA6592

ncbi_submitter: University of Queensland


ncbi_country: Hungary

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yale School of Public Health


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Stahliibacteriota;x__unclassified Candidatus Stahliibacteriota;s__Candidatus Stahliibacteriota bacterium CG08_land_8_20_14_0_20_40_26


ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: Australia: Wollongong; New South Wales

ncbi_organism_name: Arsenophonus apicola

ncbi_submitter: University of Liverpool


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; high temperature; low CO2

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Institute of Marine Science


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: bone misc

ncbi_organism_name: Porphyromonas sp. HMSC065F10

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_organism_name: Cronobacter universalis NCTC 9529

ncbi_strain_identifiers: NCTC 9529

ncbi_submitter: LifeTech


ncbi_organism_name: uncultured Stomatobaculum sp.

ncbi_submitter: EMG


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWE1_35_16


ncbi_isolation_source: feces

ncbi_submitter: the hong kong university of science and technology


ncbi_organism_name: Marinifilaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Italy: Marche; Pesaro- Urbino; Pesaro

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZSAM


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Citrobacter sp. JUb117

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Streptomyces sp. NPDC053707

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Candidatus Methylomirabilia bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;x__unclassified Candidatus Methylomirabilia;s__Candidatus Methylomirabilia bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EBI


ncbi_organism_name: Clostridiales bacterium VE202-06

ncbi_submitter: The University of Tokyo


ncbi_strain_identifiers: 22708;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Oribacterium sp.


ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: KAUST


ncbi_organism_name: Azospirillum sp. CAG:239

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Staphylococcus saprophyticus


ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Malaysia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: China: Hong Kong

ncbi_isolation_source: biofilm full-scale rotating biological contactor (RBC)

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: China: Nanhai

ncbi_isolation_source: cold seep

ncbi_organism_name: Lentisphaerae bacterium WC36

ncbi_submitter: CHINESE ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerae bacterium WC36


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P161P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacillus sp. YIM B13610

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13610


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Candidatus Scatovivens sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Scatovivens;x__unclassified Candidatus Scatovivens;s__Candidatus Scatovivens sp.


ncbi_organism_name: Salmonella sp. NW72

ncbi_submitter: Sichuan University


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: The University of Texas at Austin


ncbi_assembly_level: Chromosome

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute of Health, Department of Medical Sciences


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. NW326


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite de Limoges


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2022HL-01416


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Cereibacter sphaeroides

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: INRAE


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_assembly_name: freshwater MAG --- MJ130916B_bin-263

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Auckland


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Gemmobacter sp.


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: HeYuan City; Guangdong Province

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium arachidis

ncbi_submitter: School of Life Sciences,South China Normal University


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 40cm depth; 6 days after first rain event (27mm)

ncbi_organism_name: Nitrospirae bacterium 13_1_40CM_3_62_11

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium 13_1_40CM_3_62_11


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: household water source

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_isolation_source: Tap water

ncbi_organism_name: Rhodoferax sp. BAB1

ncbi_submitter: RKI


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Vienna


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2746

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: meat

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Streptococcus pneumoniae GA04175

ncbi_submitter: Institute for Genome Sciences


ncbi_country: South Korea: Seongnam

ncbi_isolation_source: radish

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Gachon University


ncbi_country: USA

ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Lactobacillus sp.


ncbi_country: Bangladesh

ncbi_isolation_source: Baila Fish; Frozen

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000229


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Candidatus Buchananbacteria bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Buchananiibacteriota;x__unclassified Candidatus Buchananbacteria;s__Candidatus Buchananbacteria bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China: Xinjiang

ncbi_isolation_source: saline sediment

ncbi_organism_name: Rhabdothermincola salaria

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: South Korea

ncbi_isolation_source: Kimchi; Korean traditional fermented food

ncbi_organism_name: Leuconostoc carnosum JB16

ncbi_submitter: Department of Life Science, Chung-Ang University, Republic of Korea


ncbi_country: India

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Klebsiella variicola

ncbi_strain_identifiers: CRN 19

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Polynucleobacter meluiroseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: cecal contents

ncbi_organism_name: Helicobacter sp.

ncbi_submitter: University of Queensland


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Paraglaciecola sp.

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium apri

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Pakistan

ncbi_isolation_source: throat

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Tyzzerella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: China CDC


ncbi_organism_name: Parasutterella sp.


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_country: China

ncbi_isolation_source: stem

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Guangxi University


ncbi_isolation_source: burned soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: South Korea:Cheonan

ncbi_isolation_source: kimchi

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Sinorhizobium fredii

ncbi_strain_identifiers: USDA 206

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptococcus agalactiae


ncbi_country: Brazil: Florianopolis

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Nocardioides lianchengensis


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Algeria: Bejaia Bay

ncbi_isolation_source: Surface polluted water

ncbi_organism_name: Streptomyces sp. RO-S4

ncbi_submitter: Sorbonne Universite


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: University of Liverpool


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology, Sydney


ncbi_country: USA: University of Nebraska-Lincoln

ncbi_isolation_source: whole bodies

ncbi_organism_name: Hydromonas sp.

ncbi_submitter: University of Nebraska-Lincoln


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Clostridium sp. AF32-7AC

ncbi_submitter: BGI


ncbi_organism_name: Psychrobacter faecalis


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_isolation_source: Caecum


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong (CityU)


ncbi_organism_name: Pseudomonas sp. NPDC089569

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Methylomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dialister hominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Veterinary College


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Marinomonas communis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfuricaulis sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: USA

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: University of Malaya


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Prevotella sp.


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: BGI


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Taiwan: Pingtung Prefecture; Tungkang

ncbi_organism_name: Alexandriicola marinus

ncbi_submitter: Zhejiang Ocean University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Bulgaria

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Meiji Co., Ltd.


ncbi_country: Tanzania: Mbeya

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Mesorhizobium australicum

ncbi_submitter: Washington State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Enterorhabdus sp.

ncbi_submitter: EMG


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Yangzhou University


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Rhodospirillaceae bacterium UBA5685

ncbi_submitter: University of Queensland


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Dyadobacter endophyticus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_submitter: University of central Florida


ncbi_isolation_source: metal

ncbi_organism_name: Enterobacteriaceae bacterium UBA1499


ncbi_country: Serbia: Milicinica

ncbi_organism_name: Xanthomonas arboricola pv. juglandis

ncbi_submitter: University of Exeter


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolate: YS river water

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_isolation_source: rumen

ncbi_organism_name: Alphaproteobacteria bacterium UBA2903


ncbi_country: Netherlands

ncbi_isolation_source: clinical samples

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: unverisity medical center groningen


ncbi_country: Germany

ncbi_organism_name: Prevotella illustrans

ncbi_submitter: Tuebingen University Hospital


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella sp. 78592

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Streptomyces sp. NPDC046716

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Sumerlaeia bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;c__Candidatus Sumerlaeia;x__unclassified Candidatus Sumerlaeia;s__Candidatus Sumerlaeia bacterium


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Hebei University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacillus sp. SL112

ncbi_submitter: Joint Microbiome Facility

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SL112


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__candidate division WOR-1 bacterium RIFOXYA2_FULL_36_21


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Gar CS 22

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolate: Honey

ncbi_organism_name: Apilactobacillus kunkeei

ncbi_strain_identifiers: NRIC 0776;Honey

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: Pakistan: Rawalpindi

ncbi_isolation_source: perirectal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FDA


ncbi_country: USA: PA

ncbi_isolation_source: feces

ncbi_submitter: USDA ARS


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Albidovulum denitrificans

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Rubricoccaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Frankiaceae bacterium

ncbi_submitter: University of Colorado at Boulder


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Brazil

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_submitter: IRHS


ncbi_organism_name: Clostridium perfringens


ncbi_country: China: Beijing

ncbi_isolation_source: Sediment of karst cave frome Guilin

ncbi_organism_name: Paenibacillus sp. LHD-38

ncbi_submitter: College of life sciences


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_assembly_name: freshwater MAG --- Loc080925-4-5m_bin-0666

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Roseiflexaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Spain: off the coast of Alicante

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ares Genetics


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Aeriscardovia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Demequina capsici

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M1117

ncbi_submitter: Broad Institute


ncbi_organism_name: Brevibacillus parabrevis

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_country: India

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptomyces stramineus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Candidatus Agathobaculum pullicola

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: USA: Massachusetts

ncbi_isolation_source: zooplankton collected from plum island

ncbi_organism_name: Vibrio genomosp. F10 str. 9ZB36

ncbi_submitter: MIT

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio genomosp. F10;x__Vibrio genomosp. F10 str. 9ZB36


ncbi_country: South Korea

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Paracoccus aestuarii

ncbi_submitter: IRNAS-CSIC


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_organism_name: Muribaculum intestinale


ncbi_country: South Africa: Lokaleng Village; Mahikeng

ncbi_isolation_source: fecal sample from diarrhoea affected cattle B

ncbi_organism_name: Candidimonas sp.

ncbi_submitter: North-west University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China: Zhejiang

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The First Affiliated Hospital of Medical College, Zhejiang University


ncbi_country: Germany: Frankfurt

ncbi_submitter: University Hospital Frankfurt


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Ectopseudomonas oleovorans

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Sphingomonas prati

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Brazil

ncbi_isolation_source: Fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: LAPCOM - FMVZ - USP


ncbi_country: Japan

ncbi_isolation_source: sea urchin

ncbi_organism_name: Tsuneonella troitsensis

ncbi_submitter: Henan University of Technology


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Actinomyces viscosus

ncbi_submitter: University of Malaya


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: Nepal

ncbi_isolation_source: yak milk

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: CIRM-BIA 906

ncbi_submitter: Brigham Young University


ncbi_country: United Kingdom

ncbi_strain_identifiers: BGSC 4AA1

ncbi_submitter: University of Bath

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar morrisoni


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_assembly_name: Yersinia pestis G3768 assembly

ncbi_country: Georgia

ncbi_organism_name: Yersinia pestis G3768

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Erwinia aeris

ncbi_submitter: Chinese Academy of Agriculture Sciences


ncbi_country: China: Shanghai

ncbi_isolation_source: clinic

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Municipal ceter for disease control & prevention


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: lake water

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0298R

ncbi_submitter: Broad Institute


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: China: Shandong; Jinan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong university


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: The University of Melbourne


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Canada: Ontario

ncbi_isolation_source: waste water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: USA: Indiana; Lilly Dickey Woods IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_strain_identifiers: intermedium LD_45

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: France: APHM

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_organism_name: Sphingobacteriales bacterium


ncbi_country: Cuba

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WAC05374

ncbi_submitter: McMaster University


ncbi_organism_name: Vibrio sp. Vb1026

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Nocardia abscessus

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: Uriue

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_country: Italy

ncbi_isolation_source: flour

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: CIRM-BIA 2156

ncbi_submitter: Brigham Young University


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_country: Madagascar

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Methylothermaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_isolation_source: tabasheer fruting body of fungus on Brachystachyum Keng

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Soochow University


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 3-267-03_S3_C2

ncbi_submitter: IGS


ncbi_organism_name: Escherichia coli O26:H11


ncbi_organism_name: Leadbetterella byssophila

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Duke University


ncbi_organism_name: Escherichia coli NB8

ncbi_submitter: Ningbo First Hospital


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Universidade Federal do Parana


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_country: Netherlands

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: Georgia

ncbi_isolation_source: Matsoni fermented milk product

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: University of Ljubljana


ncbi_country: USA: California; Los Angeles County

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: JNTUH


ncbi_organism_name: Hymenobacter sp.

ncbi_submitter: EPFL


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pelagibius sp.


ncbi_organism_name: Serratia sp. CY74308

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY74308


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: NA 98

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Kansas State University


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: The Second Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Streptomyces sp. NPDC014676


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_submitter: SCOPE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium EnGen0047

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: China Agricultural University


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_isolation_source: gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_country: Canada: Ontario

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pseudoxanthobacter soli DSM 19599

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Singapore

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_isolation_source: Nephrology

ncbi_organism_name: Escherichia coli

ncbi_submitter: Guangzhou Medical University


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: United Kingdom:England


ncbi_country: China: Jiangxi; Xinyu

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: JXXY

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus amylovorus subsp. animalium

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_isolation_source: drainage

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Russia

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: Japan

ncbi_submitter: Universite de Sherbrooke


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Shigella flexneri K-671

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Companilactobacillus sp. HBUAS59699

ncbi_submitter: Hubei University of Arts and Science


ncbi_country: Bolivia: Santa Cruz; CENETROP

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Centro de Ciencias Genomicas - UNAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 48:i:z


ncbi_country: Egypt: Cairo

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Oklahoma State University


ncbi_country: United Kingdom:Surrey

ncbi_isolation_source: fluid left elbow

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Shantou; Guangdong

ncbi_isolation_source: marine

ncbi_organism_name: Dinoroseobacter sp. PD6

ncbi_submitter: Shantou University


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: EMG


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp M3

ncbi_strain_identifiers: Hp M3


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: Rhizobium sullae1

ncbi_organism_name: Rhizobium sullae

ncbi_strain_identifiers: Rhizobium sullae1

ncbi_submitter: IASMA RESEARCH CENTRE - FONDAZIONE EDMUND MACH


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Australia

ncbi_submitter: The ithree institute


ncbi_country: Argentina: Rosario

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Flavipsychrobacter stenotrophus


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Caecum


ncbi_organism_name: Streptococcus pyogenes GA40634

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_submitter: Texas A&M University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: sediment

ncbi_organism_name: Geothrix sp.


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0903


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 103 (4-5904188)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 103 (4-5904188)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: South Korea: Seoul

ncbi_organism_name: Streptococcus canis

ncbi_submitter: Hallym University College of Medicine, Kangdong Sacred Heart Hospital


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: Desulfotignum sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Ecuador: Borbon

ncbi_isolation_source: human stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Oxford


ncbi_genome_category: derived from single cell

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of New South Wales


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 1091

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute of Health, Department of Medical Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolate: SPRUCE 316

ncbi_organism_name: Syntrophorhabdales bacterium

ncbi_strain_identifiers: SPRUCE 316


ncbi_organism_name: Nocardiopsis alba

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ligilactobacillus animalis


ncbi_organism_name: Enterobacter cloacae complex sp. 284J4

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 284J4


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Abuja


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-1889

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tokyo Institute of Technology


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Kerstersia gyiorum

ncbi_submitter: Affiliated Hangzhou First People's Hospital, School of Medicine, Westlake University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: France

ncbi_isolation_source: cheese rind

ncbi_organism_name: Vibrio litoralis

ncbi_submitter: INRA


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: MA

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_isolation_source: soil

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas denitrificans (nom. rej.)

ncbi_submitter: University of Washington


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Poland

ncbi_submitter: Biobank Lab, Department of Molecular Biophysics, Faculty of Biology and Environmental Protection, Univeristy of Lodz, Poland


ncbi_country: Australia: New South Wales

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: University of the Sunshine Coast


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Stanford University


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Toledo

ncbi_submitter: UFPR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Haiti

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-55A1

ncbi_submitter: Institute for Genome Sciences


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate and no molasses at 250 mg/L thiocyanate

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Pseudomonas luteola


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Sulfuricellaceae bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Bacteriovoracaceae bacterium UBA3346

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Clostridium] nexile

ncbi_submitter: EMG


ncbi_organism_name: uncultured Merdimonas sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 1

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: paddy soil

ncbi_organism_name: Paenibacillus azotifigens

ncbi_submitter: Sun Yat-Sen University


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Indian Ocean

ncbi_isolation_source: surface seawater

ncbi_organism_name: Thalassospira sp. MCCC 1A01428

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: Argentina

ncbi_isolation_source: Abomasum

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: INTA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: South Africa: North West Brits

ncbi_isolation_source: soil from a grassland

ncbi_organism_name: Xenorhabdus griffiniae

ncbi_strain_identifiers: BMMCB

ncbi_submitter: University of the Witwatersrand


ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: Tang lab


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saudi food and drug authority


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: Japan

ncbi_isolation_source: bile

ncbi_submitter: Toho University


ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: JiangSu

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis


ncbi_country: Serbia: Belgrade

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Solobacterium moorei

ncbi_submitter: EMG


ncbi_organism_name: Faucicola osloensis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Streptococcus anginosus


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Lactobacillus intestinalis


ncbi_organism_name: Spirochaetaceae bacterium


ncbi_isolation_source: fecal swab

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Corynebacterium bovis

ncbi_submitter: OsloMet


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: France: Marseille

ncbi_organism_name: Anaerostipes sp. Marseille-Q3525

ncbi_submitter: Institut hospitalo-universitaire en maladies infectieuses de Marseille


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_country: Malawi

ncbi_isolation_source: Blood


ncbi_submitter: Kangwon National University


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pseudoalteromonas sp. RW-H-Ap-1

ncbi_submitter: Chung-Ang university


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Kiritimatiellia bacterium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudarthrobacter sp. J1763

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Streptomyces sp. NPDC048584

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pedobacter suwonensis


ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Tangfeifania sp.


ncbi_organism_name: Limosilactobacillus sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Psychroserpens sp.

ncbi_submitter: University of East Anglia


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Yantai Center for Disease Control and Prevention


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Xiamen University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Prochlorococcus sp. MIT 1201

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_country: Portugal

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Vampirovibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS KAN-31

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS KAN-31

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Neoroseomonas lacus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: EMG


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northumbria University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Anaplasma phagocytophilum str. Annie

ncbi_strain_identifiers: Annie

ncbi_submitter: IGS


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia hansenii

ncbi_submitter: University of Chicago


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phocaeicola vulgatus


ncbi_assembly_name: Rumen uncultured genome RUG14940

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Jiangxi; Yongping

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Chile

ncbi_isolation_source: skin from symptomatic trout

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Coraliomargarita sp.


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Rural Development Administration


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Micropruina sp.

ncbi_submitter: Aalborg University


ncbi_organism_name: Zunongwangia sp. HRR-M8

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Enterococcus faecium VRE1044

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Thalassobacillus devorans

ncbi_strain_identifiers: CECT 7046

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Escherichia sp.


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Third Institute of Oceanography


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Portugal: Oporto

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: REQUIMTE-UCIBIO. Faculdade de Farmacia da Universidade do Porto.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMBL-EBI


ncbi_isolate: AOP28_C2_surf _bin _5

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP28_C2_surf _bin _5

ncbi_submitter: Genoscope


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Indonesia

ncbi_organism_name: Cohnella laeviribosi DSM 21336

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Cohnella;s__Cohnella laeviribosi;x__Cohnella laeviribosi DSM 21336


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Raleigh; NC

ncbi_isolation_source: Anaerobic fermented cucumber slurry spoilage

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: North Carolina State University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Clemson University


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: Northumbria University


ncbi_submitter: Fudan University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: fecal material

ncbi_organism_name: Oxalobacter formigenes

ncbi_submitter: University of Western Ontario


ncbi_organism_name: Gibbsiella quercinecans

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: root

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Harvard University


ncbi_country: Brazil:Rio Grande do Sul; Porto Alegre

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin40

ncbi_isolation_source: soil

ncbi_organism_name: Planctomycetota bacterium

ncbi_strain_identifiers: HIE bin40

ncbi_submitter: Monash University


ncbi_strain_identifiers: LT2 KO_STM3664

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: New York state

ncbi_isolation_source: stool/fecal sample

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Cornell University


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Prevotellaceae bacterium UBA1726

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus gordonii


ncbi_organism_name: Xanthomonas axonopodis pv. nakataecorchori

ncbi_strain_identifiers: NCPPB 1337

ncbi_submitter: University of Exeter


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: marine algae

ncbi_organism_name: Hoeflea ulvae

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Acetobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Mozambique: Munhena

ncbi_isolation_source: mercury contaminated soil

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Birmingham-Southern College


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: University of Chicago


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Lactobacillus intestinalis


ncbi_country: Russia: Ekaterinburg

ncbi_isolation_source: lungs

ncbi_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Walnut Creek

ncbi_organism_name: Escherichia coli

ncbi_submitter: Joint Genome Institute


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (64 uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: USA

ncbi_submitter: CDC


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_organism_name: Gelidibacter japonicus

ncbi_submitter: Numazu, Institute of Microbial Chemistry


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nocardia vinacea

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_isolation_source: sputum from CF patient

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: University of Michigan


ncbi_country: Ghana: Northern region

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Noguchi Memorial Institute fir Medical Research


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Mammaliicoccus sp. Marseille-Q6498

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Flavobacterium sp. LB3R33

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Turicibacter sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Renewable Energy Laboratory


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Rossellomorea vietnamensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Streptomyces sp. NBC_00172

ncbi_submitter: Technical University of Denmark


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Massilia sp. LXY-6

ncbi_submitter: China University of Geosciences(Beijing)


ncbi_organism_name: Corynebacterium marquesiae

ncbi_submitter: University of York