organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: FDA

assembly_level: Contig

assembly_type: haploid

excluded_from_refseq: from large multi-isolate project

genome_rep: Full

group: bacteria

organism_name: Salmonella enterica subsp. enterica serovar Infantis

release_type: Major

version_status: latest


organism_name: Salmonella enterica subsp. enterica serovar Muenchen


organism_name: Salmonella enterica subsp. enterica serovar Johannesburg


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Salmonella enterica subsp. enterica serovar Agona


asm_submitter: FDA Center for Food Safety and Applied Nutrition

organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Eastbourne


organism_name: Salmonella enterica subsp. enterica serovar Hadar


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Salmonella enterica subsp. enterica serovar Thompson


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Derby


asm_submitter: National Center for Biotechnology Information


asm_submitter: CDC

organism_name: Salmonella enterica


asm_submitter: USDA FSIS

organism_name: Campylobacter jejuni


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Ohio


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


organism_name: Salmonella enterica subsp. enterica serovar Give


organism_name: Salmonella enterica subsp. enterica serovar Brandenburg


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica serovar London


organism_name: Salmonella enterica subsp. enterica serovar Johannesburg


organism_name: Salmonella enterica subsp. enterica serovar Oranienburg


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Salmonella enterica subsp. enterica serovar Uganda


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Salmonella enterica


organism_name: Campylobacter coli


organism_name: Salmonella enterica subsp. enterica serovar Thompson


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Muenchen


organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Senftenberg


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Blockley


asm_submitter: FDA/CFSAN

organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Ohio


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Campylobacter coli


organism_name: Salmonella enterica subsp. enterica serovar Meleagridis


organism_name: Salmonella enterica


asm_submitter: Centers for Disease Control and Prevention


asm_submitter: Public Health England

organism_name: Shigella flexneri


infraspecific_name: strain=CVM N51646


excluded_from_refseq: unverified source organism; from large multi-isolate project


organism_name: Shigella boydii


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Shigella sonnei


organism_name: Shigella dysenteriae


organism_name: Escherichia coli


asm_submitter: Aarhus University

excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Pseudobdellovibrionaceae bacterium


organism_name: Burkholderiaceae bacterium


organism_name: Bacteroidia bacterium


excluded_from_refseq: derived from metagenome

organism_name: Arcicella sp.


organism_name: Oligoflexia bacterium


organism_name: Rubritepida sp.


organism_name: Bdellovibrio sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Bacteriovorax sp.


organism_name: Variovorax sp.


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Ferruginibacter sp.


organism_name: Cytophagales bacterium


organism_name: Pedobacter sp.


organism_name: Undibacterium sp.


organism_name: Opitutaceae bacterium


organism_name: Cytophaga sp.


organism_name: Herminiimonas sp.


organism_name: Mucilaginibacter sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Frankiales bacterium


organism_name: Minisyncoccota bacterium


organism_name: Microbacteriaceae bacterium


organism_name: Flavobacterium sp.


organism_name: Ramlibacter sp.


organism_name: Oligoflexia bacterium


organism_name: Bacteroidia bacterium


organism_name: Cryobacterium sp.


organism_name: Massilia sp.


organism_name: Hymenobacteraceae bacterium


organism_name: Polaromonas sp.


organism_name: Pseudobdellovibrionaceae bacterium


organism_name: Bdellovibrio sp.


organism_name: Thermoleophilia bacterium


organism_name: Cytophagaceae bacterium


organism_name: Candidatus Saccharimonadota bacterium


organism_name: Actinomycetota bacterium


organism_name: candidate division SR1 bacterium


organism_name: Candidatus Sericytochromatia bacterium


organism_name: Pseudorhodobacter sp.


organism_name: Rhizobacter sp.


organism_name: Ferruginibacter sp.


organism_name: Glaciimonas sp.


organism_name: Herminiimonas sp.


organism_name: Novosphingobium sp.


organism_name: Flavobacterium sp.


organism_name: Candidatus Altimarinota bacterium


organism_name: Sandarakinorhabdus sp.


organism_name: Sphingomonadaceae bacterium


organism_name: Chthonomonadaceae bacterium


organism_name: Microbacteriaceae bacterium


organism_name: Oligoflexus sp.


organism_name: Bacteriovorax sp.


organism_name: Candidatus Saccharimonadota bacterium


organism_name: Gemmatimonadaceae bacterium


organism_name: Cellulomonas sp.


organism_name: Polaromonas sp.


organism_name: Spirosoma sp.


organism_name: Chryseobacterium sp.


organism_name: Pedobacter sp.

paired_asm_comp: identical


organism_name: Taibaiella sp.


organism_name: Dermatophilaceae bacterium


organism_name: Rhodoferax sp.


organism_name: Chitinophagaceae bacterium


organism_name: Aeromicrobium sp.


organism_name: Actinomycetota bacterium


organism_name: Herminiimonas sp.


organism_name: Salinibacterium sp.


organism_name: Tardiphaga sp.


organism_name: Acetobacteraceae bacterium


organism_name: Ferruginibacter sp.


organism_name: Ramlibacter sp.


organism_name: Flavobacterium sp.


organism_name: Burkholderiales bacterium


organism_name: Thermoleophilia bacterium


organism_name: Pseudopedobacter sp.


organism_name: Vitreoscilla sp.


organism_name: Caulobacter sp.


organism_name: Gemmatimonadaceae bacterium


organism_name: Oligoflexus sp.


organism_name: Polaromonas sp.


organism_name: Deinococcales bacterium


organism_name: Chitinophagaceae bacterium


organism_name: Arenimonas sp.


organism_name: Frankiaceae bacterium


organism_name: Pseudorhodobacter sp.


organism_name: Rhodoferax sp.


organism_name: Ferruginibacter sp.


organism_name: Aquabacterium sp.


organism_name: Massilia sp.


organism_name: Oligoflexia bacterium


organism_name: Bacteroidia bacterium


organism_name: Methylotenera sp.


organism_name: Bacteriovorax sp.


organism_name: Rhizobacter sp.


organism_name: Burkholderiales bacterium


organism_name: Candidatus Saccharimonadota bacterium


organism_name: Burkholderiaceae bacterium


organism_name: Polaromonas sp.


organism_name: Pedobacter sp.


organism_name: Microbacteriaceae bacterium


organism_name: Flavobacterium sp.


organism_name: Bdellovibrio sp.


organism_name: Pseudobdellovibrionaceae bacterium


organism_name: Moraxellaceae bacterium


organism_name: Methylophilaceae bacterium


organism_name: Clostridia bacterium


organism_name: Candidatus Parcubacteria bacterium


organism_name: Hyphomonadaceae bacterium


organism_name: Phycisphaerales bacterium


organism_name: Saprospiraceae bacterium


organism_name: Pyrinomonadaceae bacterium


organism_name: Phycisphaerae bacterium


organism_name: Deltaproteobacteria bacterium


organism_name: Planctomycetaceae bacterium


organism_name: Gemmatimonadaceae bacterium


organism_name: Acetobacteraceae bacterium


organism_name: Anaerolineae bacterium


organism_name: Burkholderiales bacterium


organism_name: Armatimonadota bacterium


organism_name: Akkermansiaceae bacterium


organism_name: Hyphomicrobium sp.


organism_name: Chitinophagaceae bacterium


organism_name: Burkholderiaceae bacterium


organism_name: Flavobacterium sp.


organism_name: Pirellulaceae bacterium


organism_name: Nitrospiraceae bacterium


organism_name: Bacteroidia bacterium


organism_name: Ferruginibacter sp.


organism_name: Anaerolineales bacterium


organism_name: Candidatus Saccharimonadota bacterium


organism_name: Saprospiraceae bacterium


organism_name: Sphingobacteriaceae bacterium


organism_name: Cytophagaceae bacterium


organism_name: Gemmatimonadaceae bacterium


organism_name: Pyrinomonadaceae bacterium


organism_name: Rubrivivax sp.


organism_name: Rhodospirillales bacterium


organism_name: Bryobacteraceae bacterium


organism_name: Rhodoferax sp.


organism_name: Rhizobacter sp.


organism_name: Burkholderiales bacterium


organism_name: Cytophagales bacterium


organism_name: Chitinophagaceae bacterium


organism_name: Vallitaleaceae bacterium


organism_name: Myxococcales bacterium


organism_name: Fuerstiella sp.


organism_name: Leptolyngbya sp. ES-bin-22


organism_name: Candidatus Melainabacteria bacterium


organism_name: Luteimonas sp.


organism_name: Deltaproteobacteria bacterium


organism_name: Steroidobacteraceae bacterium


organism_name: Sphingomonadaceae bacterium


organism_name: Candidatus Parcubacteria bacterium


organism_name: Verrucomicrobiales bacterium


organism_name: Prolixibacteraceae bacterium


organism_name: Opitutaceae bacterium


organism_name: Sporomusaceae bacterium


organism_name: Pyrinomonadaceae bacterium


organism_name: Methyloceanibacter sp.


organism_name: Chitinophagaceae bacterium


organism_name: Burkholderiales bacterium


organism_name: Hyphomicrobiales bacterium


organism_name: Chlorobiales bacterium


organism_name: Chitinophagales bacterium


organism_name: Rhizobacter sp.


organism_name: Fimbriimonadaceae bacterium


organism_name: Sphingobacteriaceae bacterium


organism_name: Clostridiaceae bacterium


organism_name: Nannocystaceae bacterium


organism_name: Chloroflexales bacterium


organism_name: Gorillibacterium sp.


organism_name: Hymenobacter sp.


organism_name: Pseudonocardia sp.


organism_name: Planctomycetaceae bacterium


organism_name: Gemmatimonadaceae bacterium


organism_name: Anaerolineae bacterium


organism_name: Armatimonadota bacterium


organism_name: Phycisphaerae bacterium


organism_name: Verrucomicrobiales bacterium


organism_name: Cytophagales bacterium


organism_name: Burkholderiaceae bacterium


organism_name: Rhizobiaceae bacterium


organism_name: Deltaproteobacteria bacterium


organism_name: Fibrella sp.


organism_name: Kapaibacterium sp. (SeqCode)


organism_name: Bryobacteraceae bacterium


excluded_from_refseq: contaminated; derived from metagenome; genus undefined

organism_name: bacterium


organism_name: Chitinophagales bacterium


organism_name: Roseiflexaceae bacterium


asm_submitter: Utrecht University

assembly_level: Scaffold

organism_name: Verrucomicrobiaceae bacterium


organism_name: Bacteroidota bacterium


organism_name: Alphaproteobacteria bacterium


group: archaea

organism_name: Candidatus Nitrosopelagicus sp.


organism_name: Synechococcus sp.


organism_name: Planctomycetota bacterium


organism_name: SAR86 cluster bacterium


organism_name: Anaerolineales bacterium


organism_name: Candidatus Zhuqueibacterota bacterium


organism_name: FCB group bacterium


organism_name: Fidelibacterota bacterium


organism_name: Flavobacteriales bacterium


organism_name: Deltaproteobacteria bacterium


organism_name: Candidatus Desulfatifera sulfidica

relation_to_type_material: assembly from type material


organism_name: Candidatus Desulfaltia bathyphila


organism_name: Candidatus Sulfurimonas ponti


organism_name: bacterium


organism_name: Pseudomonadota bacterium


organism_name: Puniceicoccaceae bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Actinomycetota bacterium


organism_name: Kiritimatiellota bacterium


organism_name: Planctomycetota bacterium


organism_name: Candidatus Bathyarchaeota archaeon


organism_name: Bacteroidota bacterium


organism_name: SAR92 clade bacterium


organism_name: Candidatus Cloacimonadota bacterium


organism_name: Fidelibacterota bacterium


organism_name: Candidatus Aminicenantota bacterium


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly; genus undefined

organism_name: Candidatus Pelagibacterales bacterium


organism_name: Anaerolineales bacterium


organism_name: Chloroflexota bacterium


organism_name: FCB group bacterium


organism_name: Planctomycetia bacterium


organism_name: Nitrospinota bacterium


organism_name: Candidatus Desulfobia pelagia


organism_name: Alphaproteobacteria bacterium


organism_name: SAR324 cluster bacterium


organism_name: Rhodospirillaceae bacterium


organism_name: Planctomycetota bacterium


organism_name: Ardenticatenia bacterium


organism_name: Bacteroidota bacterium


organism_name: Candidatus Desulfolinea nitratireducens


organism_name: Limisphaerales bacterium


organism_name: Anaerolineae bacterium


organism_name: Verrucomicrobiota bacterium


organism_name: Candidatus Desulfatibia profunda


organism_name: Candidatus Cloacimonadota bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Candidatus Desulfacyla euxinica


organism_name: Deltaproteobacteria bacterium


organism_name: FCB group bacterium


organism_name: Fidelibacterota bacterium


organism_name: Flavobacteriales bacterium


organism_name: Actinomycetota bacterium


organism_name: Paracoccaceae bacterium


organism_name: Desulfobacterales bacterium


organism_name: bacterium


organism_name: Bacteroidota bacterium


organism_name: Synechococcus sp.


organism_name: Candidatus Pelagibacteraceae bacterium


organism_name: Chloroflexota bacterium


organism_name: Pseudomonadota bacterium


organism_name: Candidatus Desulfatibia vada


organism_name: Candidatus Pelagibacter sp.


organism_name: Candidatus Endolissoclinum sp.


organism_name: archaeon


organism_name: Verrucomicrobiota bacterium


organism_name: Candidatus Omnitrophota bacterium


organism_name: Dehalococcoidia bacterium


organism_name: Candidatus Desulfobacula maris


organism_name: Planctomycetota bacterium


organism_name: Deltaproteobacteria bacterium


organism_name: Candidatus Woesearchaeota archaeon


organism_name: Methanobacteriota archaeon


organism_name: PVC group bacterium


organism_name: Candidatus Bathyarchaeota archaeon


organism_name: Rhodospirillaceae bacterium


organism_name: Chloroflexota bacterium


organism_name: bacterium


organism_name: Flavobacteriales bacterium


organism_name: Spirochaetota bacterium


organism_name: Parcubacteria group bacterium


organism_name: Bacteroidota bacterium


organism_name: Cryomorphaceae bacterium


organism_name: Fidelibacterota bacterium


organism_name: Candidatus Omnitrophota bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Nitrososphaerota archaeon


organism_name: Dehalococcoidia bacterium


organism_name: Actinomycetota bacterium


organism_name: Planctomycetota bacterium


organism_name: FCB group bacterium


organism_name: Candidatus Thioglobus pontius


organism_name: Candidatus Bathyarchaeota archaeon


organism_name: Candidatus Atribacteria bacterium


organism_name: Nanobdellati archaeon


organism_name: Chloroflexota bacterium


organism_name: Candidatus Nitrosopumilus sp.


organism_name: archaeon


organism_name: bacterium


organism_name: Candidatus Pseudothioglobus aerophilus


organism_name: PVC group bacterium


organism_name: Chlorobium phaeobacteroides


organism_name: Methanomicrobia archaeon


organism_name: Candidatus Cloacimonadota bacterium


organism_name: Candidatus Thiopontia autotrophica


organism_name: Methanobacteriota archaeon


asm_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)

organism_name: Yeguia hominis

refseq_category: reference genome


organism_name: Luoshenia tenuis


organism_name: Feifania hominis


organism_name: Congzhengia minquanensis


organism_name: Gehongia tenuis


organism_name: Guopingia tenuis


asm_submitter: Korea Institute of Geoscience and Mineral Resources

infraspecific_name: strain=EK

organism_name: Caballeronia sp. EK


organism_name: Candidatus Brocadiales bacterium


organism_name: Ligaoa zhengdingensis


organism_name: Bianquea renquensis


organism_name: Fumia xinanensis


organism_name: Jutongia hominis


organism_name: Jutongia huaianensis


organism_name: Zhenhengia yiwuensis


organism_name: Jingyaoa shaoxingensis


organism_name: Yanshouia hominis


organism_name: Lentihominibacter hominis


organism_name: Youxingia wuxianensis


organism_name: Zongyangia hominis


organism_name: Qingrenia yutianensis


organism_name: Jilunia laotingensis


organism_name: Paratissierella segnis


organism_name: Parabacteroides acidifaciens


organism_name: Wansuia hejianensis


organism_name: Enterocloster hominis (ex Liu et al. 2021)


organism_name: Massiliimalia timonensis


organism_name: Bifidobacterium adolescentis


organism_name: Parabacteroides faecis


excluded_from_refseq: unverified source organism

organism_name: Robertmurraya crescens


excluded_from_refseq: contaminated; unverified source organism

organism_name: Paraclostridium tenue


organism_name: Blautia faecis


organism_name: Blautia stercoris


asm_submitter: Chung ang university

excluded_from_refseq: many frameshifted proteins

infraspecific_name: strain=DSM 21886

organism_name: Flavobacterium lindanitolerans


asm_submitter: Max-Delbrueck Center

organism_name: Alloprevotella sp. Lung230


organism_name: Thermoanaerobaculia bacterium


infraspecific_name: strain=LMG 25203

organism_name: Flavobacterium macrobrachii


organism_name: Salmonella enterica


organism_name: Escherichia coli


organism_name: Shigella flexneri


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Campylobacter jejuni