asm_submitter: NASA

infraspecific_name: strain=MG1655 substrain BOP27

organism_name: Escherichia coli K-12


assembly_level: Complete Genome

assembly_type: haploid

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

genome_rep: Full

group: bacteria

organism_name: Staphylococcus aureus

release_type: Major

version_status: latest


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: Qingdao Agricultural Universtiy

organism_name: Klebsiella pneumoniae

paired_asm_comp: identical


asm_submitter: National Center for Biotechnology Information

assembly_level: Contig

excluded_from_refseq: from large multi-isolate project

isolate: not applicable

organism_name: Enterococcus faecalis


asm_submitter: Ocean University of China

excluded_from_refseq: genome length too small; many frameshifted proteins

infraspecific_name: strain=ATCC 27968

organism_name: Streptomyces violascens


asm_submitter: FDA

organism_name: Escherichia coli


asm_submitter: China Agricultural University

infraspecific_name: strain=CCBAU 21365

organism_name: Bradyrhizobium sp. CCBAU 21365


infraspecific_name: strain=CCBAU 51753

organism_name: Bradyrhizobium sp. CCBAU 51753


infraspecific_name: strain=CCBAU 53421

organism_name: Bradyrhizobium sp. CCBAU 53421


infraspecific_name: strain=CCBAU 53340

organism_name: Bradyrhizobium sp. CCBAU 53340


infraspecific_name: strain=CCBAU 53338

organism_name: Bradyrhizobium sp. CCBAU 53338


infraspecific_name: strain=CCBAU 51658

organism_name: Bradyrhizobium guangdongense


infraspecific_name: strain=CCBAU 051107

organism_name: Bradyrhizobium arachidis

refseq_category: reference genome

relation_to_type_material: assembly from type material


infraspecific_name: strain=CCBAU 51765

organism_name: Bradyrhizobium sp. CCBAU 51765


infraspecific_name: strain=CCBAU 53351

organism_name: Bradyrhizobium sp. CCBAU 53351


asm_submitter: University of Georgia

organism_name: Chromobacterium sp. Rain0013


asm_submitter: University of Idaho


asm_submitter: Research Center of Avian Diseases, RCAD

organism_name: Riemerella anatipestifer


asm_submitter: Nanjing Agricultural University

organism_name: Streptococcus suis


asm_submitter: FAPESP

infraspecific_name: strain=K-12 substr. MG1655

organism_name: Escherichia coli str. K-12 substr. MG1655


asm_submitter: Technical University of Denmark

organism_name: Bacillus velezensis


asm_submitter: Max Planck Institute for Biophysik

infraspecific_name: strain=ATCC 14405

organism_name: Stutzerimonas stutzeri

relation_to_type_material: assembly from heterotypic synonym type material


asm_submitter: microbial pathogenic ecology group

organism_name: Klebsiella quasipneumoniae


asm_submitter: CDC

organism_name: Escherichia coli


organism_name: Enterococcus faecalis


asm_submitter: Health Protection Agency


isolate: Bicycle surface


isolate: Skin


asm_submitter: Public Health England

organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Shigella flexneri


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


asm_submitter: FDA/CFSAN

organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica


asm_submitter: Pontificia Universidad Catolica de Chile

excluded_from_refseq: derived from metagenome

organism_name: Geminocystis sp. M7585_C2015_104


organism_name: Thermosynechococcus sp. M98_K2018_005


excluded_from_refseq: derived from metagenome; genus undefined


organism_name: Thermosynechococcus sp. M55_K2018_012


organism_name: Thermoleptolyngbya sp. M55_K2018_002


organism_name: Synechococcus sp. M44_DOE_062


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Thermosynechococcus sp. M46_R2017_013


organism_name: Thermosynechococcus sp. M3746_W2019_013


organism_name: Trichormus sp. M33_DOE_039


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Escherichia coli


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Stanleyville


organism_name: Salmonella enterica subsp. enterica serovar Typhi


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Kottbus


organism_name: Shigella flexneri


organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


organism_name: Campylobacter coli


organism_name: Listeria monocytogenes


organism_name: Enterococcus faecalis


asm_submitter: National Center for Biotechnology Information


organism_name: Salmonella enterica subsp. enterica serovar Ordonez


asm_submitter: Center for Food Safety and Applied Nutrition


organism_name: Salmonella enterica subsp. enterica serovar Bareilly


asm_submitter: FDA-CVM

infraspecific_name: strain=CVM 45611


infraspecific_name: strain=TDR22, /cultivar=CAM

organism_name: Enterococcus faecalis TDR22


infraspecific_name: strain=TDR28, /cultivar=CAM

organism_name: Enterococcus faecalis TDR28


organism_name: Enterococcus faecalis S613


infraspecific_name: strain=TDR19, /cultivar=CAM

organism_name: Enterococcus faecalis TDR19


infraspecific_name: strain=TDR7, /cultivar=CAM

organism_name: Enterococcus faecalis TDR7


infraspecific_name: strain=TDR13, /cultivar=CAM

organism_name: Enterococcus faecalis TDR13


organism_name: Salmonella enterica


asm_submitter: FDA

organism_name: Escherichia coli


excluded_from_refseq: from large multi-isolate project; genome length too large


organism_name: Salmonella enterica subsp. enterica serovar Give


infraspecific_name: strain=WGS Day 14 WT5


organism_name: Enterococcus faecalis ADL-123


infraspecific_name: strain=WGS Day 14 delta4


organism_name: Enterococcus faecalis ADL-337


organism_name: Enterococcus faecalis ADL-335


infraspecific_name: strain=WGS Day 1 WT3


infraspecific_name: strain=WGS Day 14 WT3


organism_name: Enterococcus faecalis EX166083VC26


infraspecific_name: strain=WGS Day 14 WT2


infraspecific_name: strain=WGS Day 14 WT6


isolate: SK55 Si3

organism_name: Enterococcus faecalis OG1RF


isolate: SK55 Si4


organism_name: Enterococcus faecalis ADL-336


isolate: SK55 Si56


isolate: Run 2 Day 6

organism_name: Enterococcus faecalis


isolate: SK55 L6


isolate: Run 2 Day 7


isolate: Run 2 Day 8


isolate: Run 2 Day 11


isolate: Run 2 Day 12


isolate: Run 2 Day 9


isolate: Run 2 Day 5


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica


isolate: Run 2 Day 4


isolate: SK55 C4


isolate: SK55 L4


isolate: Run 2 Day 10


isolate: SK55 L3


organism_name: Enterococcus faecalis EX166083VC17


organism_name: Enterococcus faecalis EX166083VC23


organism_name: Enterococcus faecalis EX166083VC21


organism_name: Enterococcus faecalis EX166083VC18


organism_name: Enterococcus faecalis EX166083VC15


organism_name: Enterococcus faecalis EX166083VC14


organism_name: Enterococcus faecalis EX166083VC19


organism_name: Enterococcus faecalis EX166083VC20


organism_name: Enterococcus faecalis EX166083VC07


isolate: Run 1 Day 8


isolate: Run 1 Day 9


asm_submitter: Public Health Agency of Canada

organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


isolate: Run 1 Day 7


isolate: Run 1 Day 10


isolate: Run 2 Day 17


isolate: Run 2 Day 15


isolate: Run 1 Day 6


isolate: Run 2 Day 19


isolate: Run 2 Day 18


isolate: Run 2 Day 16


isolate: Run 2 Day 14


isolate: Run 2 Day 13


isolate: Run 2 Day 3


isolate: Run 1 Day 24


isolate: Run 2 Day 1


isolate: Run 1 Day 23


isolate: Run 1 Day 19


isolate: Run 1 Day 21


isolate: Run 2 Day 2


isolate: Run 1 Day 16


isolate: Run 1 Day 18


isolate: Run 1 Day 22


isolate: SK55 C6


isolate: SK55 C2


isolate: SK55 L2


isolate: SK55 Si2


infraspecific_name: strain=WGS Day 14 WT1


infraspecific_name: strain=WGS Day 14 T11RF control


isolate: SK55 C3


isolate: Run 1 Day 13


isolate: Run 1 Day 15


infraspecific_name: strain=NCTC 2400


isolate: Run 1 Day 11


isolate: Run 1 Day 14


infraspecific_name: strain=ATCC 33186


infraspecific_name: strain=NCTC 13379


isolate: Run 1 Day 2


isolate: Run 1 Day 12


infraspecific_name: strain=NCTC 10927


organism_name: Salmonella enterica


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


infraspecific_name: strain=NCTC 8132


infraspecific_name: strain=NCTC 2705


infraspecific_name: strain=NCTC 8213


infraspecific_name: strain=NCTC 12203


infraspecific_name: strain=NCTC 775


infraspecific_name: strain=NCTC 8175


infraspecific_name: strain=NCTC 8176


infraspecific_name: strain=NCTC 370


infraspecific_name: strain=NCTC 5957


infraspecific_name: strain=NCTC 12201


infraspecific_name: strain=NCTC 8131


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Enterococcus faecalis


isolate: Enterococcus faecalis


organism_name: Listeria monocytogenes


asm_submitter: Washington State Department of Health - Public Health Laboratories


asm_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


asm_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)

organism_name: Pseudomonas aeruginosa


excluded_from_refseq: annotation fails completeness check


excluded_from_refseq: fragmented assembly


asm_submitter: West China Hospital, Sichuan University

organism_name: Klebsiella pneumoniae


asm_submitter: Massey University

organism_name: Leptospira borgpetersenii serovar Ballum


asm_submitter: Mahatma Gandhi University

assembly_level: Scaffold

organism_name: Aeromonas veronii


organism_name: Leptospira borgpetersenii serovar Hardjo-bovis


excluded_from_refseq: contaminated; many frameshifted proteins


organism_name: Leptospira interrogans serovar Pomona


organism_name: Leptospira borgpetersenii serovar Balcanica


organism_name: Leptospira borgpetersenii serovar Arborea


asm_submitter: Beijing Institute of Microbiology and Epidemiology

organism_name: Burkholderia pseudomallei


excluded_from_refseq: fragmented assembly; from large multi-isolate project


asm_submitter: Life sciences Institute

organism_name: Nocardioides acrostichi


asm_submitter: Hospital Universitario La Paz

excluded_from_refseq: many frameshifted proteins

organism_name: Serratia ureilytica


asm_submitter: Central Texas Veterans Health Care System

organism_name: Lelliottia nimipressuralis


asm_submitter: University of Pittsburgh

organism_name: Enterobacter hormaechei


asm_submitter: World Institute of Kimchi

organism_name: Lacticaseibacillus paracasei subsp. tolerans


organism_name: Enterobacter cloacae


organism_name: Enterobacter kobei


asm_submitter: Shandong Univesity

organism_name: Psychroserpens luteus


asm_submitter: Huazhong agriculture university


asm_submitter: UNICAMP

organism_name: Streptomyces albidoflavus


asm_submitter: Federal State Budget Institution Federal Scientific Center VIEV

infraspecific_name: strain=KL

organism_name: Mannheimia haemolytica


asm_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences

organism_name: Mycolicibacterium smegmatis


asm_submitter: ISMETT

infraspecific_name: strain=ISMETT ST392 cl11

organism_name: Klebsiella pneumoniae


excluded_from_refseq: abnormal gene to sequence ratio; annotation fails completeness check; many frameshifted proteins

organism_name: Gallibacterium anatis


infraspecific_name: strain=ISMETT ST392 cl12


infraspecific_name: strain=ISMETT ST392 cl10


infraspecific_name: strain=ISMETT ST392 cl9


infraspecific_name: strain=ISMETT ST307 cl6


infraspecific_name: strain=ISMETT ST101 cl8


infraspecific_name: strain=ISMETT ST307 cl7


infraspecific_name: strain=ISMETT ST307 cl5


infraspecific_name: strain=ISMETT ST307 cl4


infraspecific_name: strain=ISMETT ST512 cl2


infraspecific_name: strain=ISMETT ST512 cl3


infraspecific_name: strain=ISMETT ST512 cl1


asm_submitter: National Center for Biotechnology Information

organism_name: Enterococcus faecalis


asm_submitter: CDC

organism_name: Salmonella enterica


asm_submitter: Washington State Department of Health - Public Health Laboratories

organism_name: Escherichia coli


asm_submitter: FDA


organism_name: Listeria monocytogenes


organism_name: Shigella flexneri


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter coli


asm_submitter: Health Protection Agency


infraspecific_name: strain=CVM N19EC0093


infraspecific_name: strain=CVM N19EC0384


infraspecific_name: strain=CVM N19EC0134


asm_submitter: Center for Food Safety and Applied Nutrition


asm_submitter: FDA/CFSAN


organism_name: Campylobacter jejuni


organism_name: Shigella sonnei


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


asm_submitter: US Food and Drug Administration


asm_submitter: Monash University

organism_name: Enterococcus faecium


asm_submitter: University of Siena

excluded_from_refseq: unverified source organism

organism_name: Mammaliicoccus fleurettii


asm_submitter: The Institute of Oceanology, Chinese Academy of Sciences

infraspecific_name: strain=PBO

organism_name: Brucella anthropi


asm_submitter: NEB

organism_name: Thermaerobacillus caldiproteolyticus


asm_submitter: King Abdullah University of Science and Technology

organism_name: Paenibacillus sp. JZ16


organism_name: Cellulosimicrobium sp. JZ28


infraspecific_name: strain=CVM N18EC0582


infraspecific_name: strain=CVM N18EC0634


isolate: Escherichia coli


infraspecific_name: strain=CVM N18EC0656


infraspecific_name: strain=CVM N18EC0212


infraspecific_name: strain=CVM N18EC1118


infraspecific_name: strain=CVM N18EC1070


infraspecific_name: strain=CVM N18EC0474


infraspecific_name: strain=CVM N18EC1116


infraspecific_name: strain=CVM N18EC1180


infraspecific_name: strain=CVM N18EC0948


infraspecific_name: strain=CVM N18EC0964


asm_submitter: Microbiological Diagnostics Unit


organism_name: Shigella boydii


asm_submitter: Vet-LIRN-CVM-FDA


asm_submitter: The Maharaja Sayajirao University of Baroda


organism_name: Enterobacter hormaechei


asm_submitter: Station Biologique de Roscoff

organism_name: Zobellia nedashkovskayae


organism_name: Zobellia roscoffensis


infraspecific_name: strain=CVM N18EC070


asm_submitter: CDC


asm_submitter: FDA

organism_name: Enterococcus faecalis


infraspecific_name: strain=CVM N18EC116

organism_name: Escherichia coli


organism_name: Escherichia fergusonii


organism_name: Shigella flexneri


asm_submitter: National Center for Biotechnology Information


organism_name: Escherichia coli O143:H4


annotation_name: Annotation submitted by KAUST

annotation_provider: KAUST

asm_submitter: KAUST

organism_name: Mycolicibacterium phlei


asm_submitter: Health Protection Agency


infraspecific_name: strain=CVM N17EC1058


infraspecific_name: strain=CVM N17EC0272


infraspecific_name: strain=CVM N17EC0786


infraspecific_name: strain=CVM N17EC0056


infraspecific_name: strain=CVM N17EC0502


infraspecific_name: strain=CVM N17EC1311


asm_submitter: FDA/CFSAN


asm_submitter: South-Central University for Nationalities

assembly_level: Chromosome

organism_name: Bacillus paranthracis


organism_name: Bacillus cereus


organism_name: Lysinibacillus sphaericus


infraspecific_name: strain=KellenQ


infraspecific_name: strain=CVM N17EC0212


asm_submitter: RARI

organism_name: Yersinia pestis


infraspecific_name: strain=KM 567


asm_submitter: microbial pathogenic ecology group

organism_name: Klebsiella pneumoniae


asm_submitter: US Food and Drug Administration


organism_name: Escherichia coli O24


asm_submitter: Chinese Center for Disease Control and Prevention

infraspecific_name: strain=DSM 18239

organism_name: Nocardioides salarius


asm_submitter: zhejiang university

excluded_from_refseq: contaminated; fragmented assembly

organism_name: Pseudomonas donghuensis


organism_name: Enterococcus faecium


asm_submitter: Brigham & Women's Hospital


asm_submitter: USDA FSIS

organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


organism_name: Campylobacter lari


organism_name: Enterococcus faecalis


asm_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)

organism_name: Vibrio anguillarum


infraspecific_name: strain=Vancomycin resistant Enterococcus faecium


organism_name: Salmonella enterica


organism_name: Escherichia coli


infraspecific_name: strain=4070 E


asm_submitter: Russian Research Anti-Plague Institute "Microbe"

organism_name: Yersinia pestis subsp. pestis


organism_name: Cronobacter sakazakii


organism_name: Cronobacter malonaticus


asm_submitter: Hospital Universitario La Paz

organism_name: Serratia marcescens


asm_submitter: Lycoming College

organism_name: Flavobacterium sp. MR2016-29


asm_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS

infraspecific_name: strain=VKM Ac-2876

organism_name: Plantibacter sp. VKM Ac-2876


infraspecific_name: strain=CSZ

organism_name: Flavobacterium sp. CSZ


infraspecific_name: strain=JLP

organism_name: Flavobacterium sp. JLP


infraspecific_name: strain=ANB

organism_name: Flavobacterium sp. ANB


infraspecific_name: strain=VKM Ac-2870

organism_name: Microbacterium sp. VKM Ac-2870


infraspecific_name: strain=VKM Ac-1786

organism_name: Herbiconiux sp. VKM Ac-1786


infraspecific_name: strain=VKM Ac-2530

organism_name: Frigoribacterium sp. VKM Ac-2530


infraspecific_name: strain=VKM Ac-2889

organism_name: Curtobacterium sp. VKM Ac-2889


infraspecific_name: strain=VKM Ac-2883

organism_name: Frondihabitans sp. VKM Ac-2883


infraspecific_name: strain=VKM Ac-1396

organism_name: Frigoribacterium sp. VKM Ac-1396


infraspecific_name: strain=VKM Ac-2865

organism_name: Curtobacterium sp. VKM Ac-2865


infraspecific_name: strain=VKM Ac-2887

organism_name: Curtobacterium sp. VKM Ac-2887


infraspecific_name: strain=VKM Ac-2884

organism_name: Curtobacterium sp. VKM Ac-2884


infraspecific_name: strain=VKM Ac-1395

organism_name: Curtobacterium sp. VKM Ac-1395


infraspecific_name: strain=VKM Ac-1393

organism_name: Curtobacterium sp. VKM Ac-1393


infraspecific_name: strain=VKM Ac-1796

organism_name: Curtobacterium sp. VKM Ac-1796


infraspecific_name: strain=VKM Ac-1376

organism_name: Curtobacterium sp. VKM Ac-1376


infraspecific_name: strain=VKM Ac-1795

organism_name: Curtobacterium flaccumfaciens


infraspecific_name: strain=VKM Ac-2873

organism_name: Clavibacter sp. VKM Ac-2873


infraspecific_name: strain=VKM Ac-1386


infraspecific_name: strain=VKM Ac-2872

organism_name: Clavibacter sp. VKM Ac-2872


infraspecific_name: strain=VKM Ac-2542

organism_name: Clavibacter quasicaliforniensis


infraspecific_name: strain=VKM Ac-2886

organism_name: Clavibacter phaseoli


infraspecific_name: strain=VKM Ac-2874

organism_name: Agreia pratensis


infraspecific_name: strain=VKM Ac-1790

organism_name: Clavibacter michiganensis subsp. michiganensis


infraspecific_name: strain=VKM Ac-2885

organism_name: Plantibacter sp. VKM Ac-2885


infraspecific_name: strain=VKM Ac-2880

organism_name: Plantibacter sp. VKM Ac-2880


infraspecific_name: strain=VKM Ac-2879

organism_name: Rathayibacter sp. VKM Ac-2879


infraspecific_name: strain=VKM Ac-2867

organism_name: Pseudoclavibacter sp. VKM Ac-2867


infraspecific_name: strain=VKM Ac-2888

organism_name: Pseudoclavibacter sp. VKM Ac-2888


infraspecific_name: strain=VKM Ac-2878

organism_name: Rathayibacter sp. VKM Ac-2878


asm_submitter: China CDC

infraspecific_name: strain=CCUG 32105

organism_name: Corynebacterium afermentans subsp. lipophilum


asm_submitter: University of Valencia

organism_name: Vibrio vulnificus


asm_submitter: Institute of Microbial Technology

organism_name: Savagea serpentis


infraspecific_name: strain=DSM 45110

organism_name: Corynebacterium suicordis DSM 45110


asm_submitter: Fraunhofer IME

organism_name: Rhodococcus rhodochrous


asm_submitter: Beijing Da Bei Nong Science and Technology Group Co., Ltd.

organism_name: Salmonella enterica subsp. enterica


infraspecific_name: strain=HJJ

organism_name: Flavobacterium sp. HJJ


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


asm_submitter: The University of Adelaide

organism_name: Acinetobacter sp. SK-43


organism_name: Salmonella enterica


organism_name: Flavobacterium sp. LC2016-12


asm_submitter: Erciyes University

organism_name: Pseudomonas sp. p50(2008)


asm_submitter: FDA/CFSAN

organism_name: Cronobacter sakazakii


asm_submitter: Sichuan Agricultural University

organism_name: Acinetobacter towneri


asm_submitter: Water Research Institute, IRSA-CNR

organism_name: Dehalococcoides mccartyi


group: archaea

organism_name: Methanobacterium formicicum


organism_name: Aeromicrobium sp.


organism_name: Methanobrevibacter arboriphilus


asm_submitter: Shandong University

organism_name: Psychrobacter sp. N25K4-3-2


asm_submitter: KRIBB

organism_name: Clostridium vitabionis


asm_submitter: Centers for Disease Control and Prevention

organism_name: Clostridioides difficile


release_type: Minor


asm_submitter: Chinese Academy of Sciences

organism_name: Xanthomonas phaseoli pv. manihotis


asm_submitter: Third Institute of Oceanography, MNR

organism_name: Fusibacter ferrireducens


asm_submitter: Korean Research Institute of Bioscience and Biotechnology

infraspecific_name: strain=KCTC 19276

organism_name: Nocardioides agariphilus


infraspecific_name: strain=KCTC 19275

organism_name: Nocardioides islandensis


asm_submitter: Shanghai municipal center for disease control and prevention

organism_name: Listeria monocytogenes


asm_submitter: The Chinese University of Hong Kong

organism_name: Klebsiella pneumoniae


asm_submitter: Research Institute of Forest Ecology Environment and Protection

organism_name: Noviherbaspirillum soli


asm_submitter: Yunnan University

infraspecific_name: strain=YIM S02566

organism_name: Aestuariimicrobium ganziense


organism_name: Noviherbaspirillum malthae


asm_submitter: Gansu Agricultural University

organism_name: Rhizobium sp. 007


asm_submitter: Henan Agricultural University


asm_submitter: Lishui Hospital, Zhejiang University School of Medicine

organism_name: Citrobacter amalonaticus


asm_submitter: Huazhong Agricultural University

organism_name: Escherichia coli O157:H7


asm_submitter: Ghent University

organism_name: Gluconobacter sp. R75828


asm_submitter: University of KwaZulu-Natal (UKZN), South Africa

organism_name: Aeromonas hydrophila


asm_submitter: J. Craig Venter Institute

excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Oribacterium parvum


asm_submitter: FDA/CFSAN

organism_name: Cronobacter sakazakii


organism_name: Cronobacter malonaticus


organism_name: Cronobacter muytjensii


asm_submitter: Sun Yat-sen University

infraspecific_name: strain=SYSU G02173

organism_name: Thermaurantiacus tibetensis


organism_name: Pseudoleptotrichia goodfellowii


infraspecific_name: strain=SYSU G03142


organism_name: Lancefieldella rimae


organism_name: Lancefieldella parvula


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small


asm_submitter: University of Alberta

organism_name: Burkholderia pseudomultivorans


asm_submitter: Kyonggi University

organism_name: Diaphorobacter caeni


asm_submitter: Jiangxi University of Science and Technology

infraspecific_name: strain=QC-J

organism_name: Bacillus velezensis


asm_submitter: Dongguk University, Biomedi Campus

organism_name: Simulacricoccus sp. 17bor-14


organism_name: Planobacterium oryzisoli


asm_submitter: Nanjing Institute of Geography&Limnology Chinese Academy of Sciences

organism_name: Methylophilus sp. 13


organism_name: Methylophilus sp. 14


asm_submitter: Shanghai municipal center for disease control and prevention

organism_name: Listeria monocytogenes


asm_submitter: University of Calcutta

organism_name: Micromonospora sp. ANENR4


organism_name: Nocardia sp. BSTN01


asm_submitter: Chinese Center for Disease Control and Prevention

excluded_from_refseq: genus undefined

organism_name: Actinomycetaceae bacterium zg1095


infraspecific_name: strain=QUAN

organism_name: Methylophilus sp. QUAN


organism_name: Actinomycetaceae bacterium zg1166


asm_submitter: Federal University of Minas Gerais

organism_name: Priestia megaterium


organism_name: Microbacterium sp. UFMG61


organism_name: Klebsiella variicola


organism_name: Pantoea ananatis


organism_name: Pseudomonas sp. UFMG81


organism_name: Ochrobactrum sp. CNPMS2088


asm_submitter: Institute of Microbiology

organism_name: Aliidiomarina indica


asm_submitter: Universidad Nacional Mayor de San Marcos

organism_name: Pasteurella multocida


organism_name: Pararhodonellum marinum


asm_submitter: Quanzhou Normal University

organism_name: Micromonospora sp. S-DT3-3-22


asm_submitter: China Agricultural University

organism_name: Avibacterium paragallinarum


organism_name: Staphylococcus chromogenes


asm_submitter: Shandong Univesity

organism_name: Tamlana sp. I1


asm_submitter: National Microbiology Lab

organism_name: Mycobacteroides abscessus subsp. abscessus


organism_name: Mycobacteroides abscessus subsp. massiliense


asm_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences

organism_name: Nocardia sp. XZ_19_231


organism_name: Nocardia sp. XZ_19_369


organism_name: Nocardia sp. XZ_19_385


infraspecific_name: strain=JCM 18848

organism_name: Actinomyces haliotis


asm_submitter: CSIR-Central Salt and Marine Chemicals Research Institute

infraspecific_name: strain=SR10_MTCC 25325

organism_name: Arthrobacter gandavensis


asm_submitter: Universite de Toulon

organism_name: Nonlabens mediterrranea


asm_submitter: First Affiliated Hospital of Nanchang University, Nanchang University

organism_name: Klebsiella pneumoniae


asm_submitter: NASA

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

infraspecific_name: strain=SD

organism_name: Acinetobacter baumannii


infraspecific_name: strain=Cairo

organism_name: Enterococcus faecium


asm_submitter: Heinrich Heine University Duesseldorf

infraspecific_name: strain=DSM 111151

organism_name: Rodentibacter haemolyticus


asm_submitter: University of Nebraska Medical Center


asm_submitter: Nicolaus Copernicus University

organism_name: Catenulispora pinisilvae


asm_submitter: University Hospital Muenster


asm_submitter: Gujarat University

excluded_from_refseq: contaminated

organism_name: Klebsiella sp. SSN1


asm_submitter: University of Hawaii, Hilo

organism_name: Pseudoalteromonas sp. PPB1


organism_name: Klebsiella michiganensis


organism_name: Escherichia coli


organism_name: Citrobacter freundii


organism_name: Morganella morganii


asm_submitter: Macquarie University

organism_name: Dietzia sp. SYD-A1


asm_submitter: chungang university

infraspecific_name: strain=JCM 14068

organism_name: Nonlabens antarcticus


annotation_name: Annotation submitted by University of Vienna

annotation_provider: University of Vienna

asm_submitter: University of Vienna

infraspecific_name: strain=ET

organism_name: Candidatus Clavichlamydia salmonicola


organism_name: Candidatus Rhabdochlamydia porcellionis


infraspecific_name: strain=DSM 44948

organism_name: Catenulispora rubra


annotation_name: Annotation submitted by The Third Institute of State Oceanic Administration (SOA)

organism_name: Alloalcanivorax venustensis ISO4


annotation_provider: The Third Institute of State Oceanic Administration (SOA)

organism_name: Alloalcanivorax profundimaris


asm_submitter: National Center for Biotechnology Information

excluded_from_refseq: from large multi-isolate project


asm_submitter: FDA


asm_submitter: CDC

organism_name: Salmonella enterica


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


asm_submitter: USDA FSIS

organism_name: Campylobacter jejuni


organism_name: Shigella flexneri


organism_name: Enterococcus faecium


asm_submitter: Korea University Graduate School

organism_name: Salmonella enterica subsp. enterica serovar Istanbul


asm_submitter: FDA/CFSAN


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Muenchen


organism_name: Escherichia coli


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter coli


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

isolate: Clinical


organism_name: Salmonella enterica subsp. enterica serovar Uganda


organism_name: Salmonella enterica subsp. enterica serovar Derby


asm_name: Escherichia fergusonii AMFC_UC2019

asm_submitter: Armed Forces Medical College


asm_submitter: University of Sao Paulo


organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


organism_name: Salmonella enterica subsp. enterica serovar Alachua


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: Public Health Agency of Canada


organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi B var. L(+) tartrate +


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A


organism_name: Salmonella enterica subsp. enterica serovar Thompson


organism_name: Salmonella enterica subsp. enterica serovar Meleagridis


organism_name: Salmonella enterica subsp. enterica serovar Johannesburg


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Reading


organism_name: Salmonella enterica subsp. enterica serovar Albany


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Salmonella enterica subsp. enterica serovar Muenchen


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Manhattan


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Campylobacter jejuni


organism_name: Enterococcus faecium


asm_submitter: Institute of Microbiology, National Academy of Sciences of Belarus

organism_name: Pseudomonas lundensis


organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Thompson


asm_submitter: Zhejiang Tianke High Technology Development Co.Ltd.

organism_name: Lacticaseibacillus rhamnosus


organism_name: Bifidobacterium animalis


organism_name: Lactiplantibacillus plantarum


organism_name: Lacticaseibacillus paracasei


organism_name: Enterococcus faecalis


organism_name: Lactobacillus delbrueckii


organism_name: Limosilactobacillus reuteri


organism_name: Salmonella enterica subsp. enterica serovar Infantis


isolate: CVM N20C095


isolate: CVM N20C094


organism_name: Escherichia coli


isolate: CVM N20C093


organism_name: Salmonella enterica


organism_name: Campylobacter coli


organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Enterococcus faecium


asm_submitter: Massey University


excluded_from_refseq: from large multi-isolate project; many frameshifted proteins


asm_submitter: University of New South Wales

organism_name: Azospirillum sp. INR13


organism_name: Novosphingobium sp. NBM11


organism_name: Quadrisphaera sp. INWT6


organism_name: Paracoccus sp. NBH48


asm_submitter: West China Hospital, Sichuan University

organism_name: Klebsiella pneumoniae


asm_submitter: National Center for Biotechnology Information

organism_name: Enterococcus faecium Ef_aus0091


infraspecific_name: strain=Enterococcus faecium 47


asm_submitter: FDA


organism_name: Enterococcus faecium Ef_RPH2


organism_name: Enterococcus faecium Ef_RPH3


organism_name: Enterococcus faecium Ef_RPH1


organism_name: Enterococcus faecium Ef_aus0098


infraspecific_name: strain=Enterococcus faecium 27


infraspecific_name: strain=Enterococcus faecium 30


infraspecific_name: strain=Enterococcus faecium 29


infraspecific_name: strain=Enterococcus faecium 26


infraspecific_name: strain=Enterococcus faecium 25


infraspecific_name: strain=Enterococcus faecium 28


infraspecific_name: strain=Enterococcus faecium 804400


infraspecific_name: strain=Enterococcus faecium 2


isolate: Enterococcus faecium 3


infraspecific_name: strain=Enterococcus faecium 804399


infraspecific_name: strain=Enterococcus faecium 46


infraspecific_name: strain=Enterococcus faecium 5


isolate: Bioreactor Run 2 Isolate 90


infraspecific_name: strain=Enterococcus faecium 1


isolate: Bioreactor Run 2 Isolate 6


isolate: Bioreactor Run 1 Isolate 58


infraspecific_name: strain=Enterococcus faecium 11


infraspecific_name: strain=Enterococcus faecium 8


isolate: Bioreactor Run 1 Isolate 7


infraspecific_name: strain=Enterococcus faecium 4


infraspecific_name: strain=Enterococcus faecium 7


infraspecific_name: strain=Enterococcus faecium 9


organism_name: Enterococcus faecium Efm-HS0661


isolate: Bioreactor Run 2 Day 8


infraspecific_name: strain=Enterococcus faecium 12


isolate: Bioreactor Run 1 Isolate 70


isolate: Bioreactor Run 1 Isolate 77


isolate: Bioreactor Run 1 Isolate 46


isolate: Bioreactor Run 1 Day 11


isolate: Bioreactor Run 1 Day 12


isolate: Bioreactor Run 1 Isolate 50


isolate: Bioreactor Run 2 Isolate 59


infraspecific_name: strain=Enterococcus faecium 32


isolate: Bioreactor Run 1 Isolate 49


infraspecific_name: strain=Enterococcus faecium 33


isolate: Bioreactor Run 2 Isolate 29


organism_name: Enterococcus faecium Ef_aus0081


organism_name: Enterococcus faecium Ef_aus0048


infraspecific_name: strain=Enterococcus faecium 51


infraspecific_name: strain=Enterococcus faecium 48


infraspecific_name: strain=Enterococcus faecium 39


infraspecific_name: strain=Enterococcus faecium 20


infraspecific_name: strain=Enterococcus faecium 804396


infraspecific_name: strain=Enterococcus faecium 14


infraspecific_name: strain=Enterococcus faecium 44


infraspecific_name: strain=Enterococcus faecium 40


infraspecific_name: strain=Enterococcus faecium 37


infraspecific_name: strain=Enterococcus faecium 804403


infraspecific_name: strain=Enterococcus faecium 34


organism_name: Enterococcus faecium Ef_aus0063


organism_name: Enterococcus faecium Ef_aus0084


infraspecific_name: strain=Enterococcus faecium 45


organism_name: Enterococcus faecium Ef_aus0087


organism_name: Enterococcus faecium Ef_aus0039


organism_name: Enterococcus faecium Ef_aus0080


infraspecific_name: strain=Enterococcus faecium 804397

organism_name: Enterococcus faecium


isolate: Bioreactor Run 1 Day 7


infraspecific_name: strain=Enterococcus faecium 18


infraspecific_name: strain=Enterococcus faecium 38


organism_name: Enterococcus faecium Ef_aus0030


isolate: Bioreactor Run 2 Isolate 61


isolate: Bioreactor Run 2 Isolate 63


isolate: Bioreactor Run 2 Day 10


isolate: Flask Transfer Population 3 Isolate 5


isolate: Bioreactor Run 2 Isolate 74


isolate: Bioreactor Run 1 Day 5


isolate: Bioreactor Run 1 Day 8


isolate: Bioreactor Run 1 Day 6


isolate: Bioreactor Run 1 Isolate 79


isolate: Bioreactor Run 1 Day 3


isolate: Bioreactor Run 2 Day 9


isolate: Bioreactor Run 1 Isolate 83


isolate: Bioreactor Run 2 Day 4


isolate: HOU503 Ancestor


isolate: Flask Transfer Population 1 Isolate 1


isolate: Bioreactor Run 1 Day 10


isolate: Bioreactor Run 2 Day 2


isolate: Bioreactor Run 2 Isolate 91


isolate: Bioreactor Run 2 Day 3


isolate: Bioreactor Run 1 Day 9


isolate: Bioreactor Run 2 Day 1


isolate: Flask Transfer Population 5 Isolate 9


isolate: Bioreactor Run 2 Day 6


isolate: Flask Transfer Population 1 Isolate 2


isolate: Bioreactor Run 2 Day 5


isolate: Flask Transfer Population 2 Isolate 3


isolate: Flask Transfer Population 2 Isolate 4


isolate: Flask Transfer Population 4 Isolate 8


organism_name: Enterococcus faecium Ef_aus0040


isolate: Flask Transfer Population 5 Isolate 10


isolate: Bioreactor Run 2 Day 7


organism_name: Enterococcus faecium Ef_aus0057


organism_name: Enterococcus faecium Ef_aus0069


isolate: Bioreactor Run 2 Isolate 76


organism_name: Enterococcus faecium Ef_aus0071


infraspecific_name: strain=Enterococcus faecium 17


infraspecific_name: strain=Enterococcus faecium 804404


infraspecific_name: strain=Enterococcus faecium 19


infraspecific_name: strain=Enterococcus faecium 15


infraspecific_name: strain=Enterococcus faecium 35


organism_name: Enterococcus faecium Ef_aus0018


isolate: Bioreactor Run 1 Isolate 17


infraspecific_name: strain=Enterococcus faecium 31


infraspecific_name: strain=Enterococcus faecium 42


infraspecific_name: strain=Enterococcus faecium 804402


infraspecific_name: strain=Enterococcus faecium 36


infraspecific_name: strain=Enterococcus faecium 43


organism_name: Enterococcus faecium Ef_aus0100


organism_name: Enterococcus faecium Ef_aus0050


organism_name: Enterococcus faecium Ef_aus0094


isolate: Flask Transfer Population 4 Isolate 7


isolate: Flask Transfer Population 3 Isolate 6


isolate: Single colony isolate


infraspecific_name: strain=Microbial


infraspecific_name: strain=BSAC_ec1382, EC1252


infraspecific_name: strain=BSAC_ec1725, EC0941


infraspecific_name: strain=NCTC 12204


infraspecific_name: strain=NCTC 13169


infraspecific_name: strain=NCTC 12202


infraspecific_name: strain=NCTC 7380


asm_submitter: CDC

organism_name: Salmonella enterica


asm_submitter: Center for Food Safety and Applied Nutrition


infraspecific_name: strain=BSAC_ec1660, EC0920


infraspecific_name: strain=BSAC_ec1609, EC0910


infraspecific_name: strain=BSAC_ec2614, EC1147


infraspecific_name: strain=BSAC_ec1331, EC0845


infraspecific_name: strain=BSAC_ec1717, EC0939


infraspecific_name: strain=BSAC_ec1715, EC0938


infraspecific_name: strain=BSAC_ec1699, EC0931


asm_submitter: Health Protection Agency

organism_name: Escherichia coli


asm_submitter: Public Health England

organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Monschaui


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Shigella flexneri


organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Tennessee


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Salmonella enterica subsp. enterica serovar Give


organism_name: Salmonella enterica subsp. enterica serovar Brandenburg


organism_name: Enterococcus faecium


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Uganda


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi B var. L(+) tartrate +


organism_name: Salmonella enterica


organism_name: Escherichia coli


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Johannesburg


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Livingstone


organism_name: Campylobacter coli


organism_name: Campylobacter jejuni


excluded_from_refseq: unverified source organism; from large multi-isolate project


organism_name: Shigella flexneri


infraspecific_name: strain=jejuni


asm_submitter: Centers for Disease Control and Prevention


infraspecific_name: strain=food isolate of L. monocytogenes


infraspecific_name: strain=clinical isolate of L. monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Bareilly


organism_name: Salmonella enterica subsp. enterica serovar Muenster


organism_name: Enterococcus faecium


organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Alachua


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Litchfield


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Singapore


organism_name: Salmonella enterica subsp. enterica serovar Abony


organism_name: Salmonella enterica subsp. enterica serovar Rubislaw


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: University of Parma

infraspecific_name: strain=DSM 18481

organism_name: Lysobacter niastensis