annotation_name: Annotation submitted by Moringa milk industry co., ltd.

annotation_provider: Moringa milk industry co., ltd.

asm_submitter: Moringa milk industry co., ltd.

excluded_from_refseq: genus undefined

organism_name: Bifidobacteriaceae bacterium MCC01971


assembly_level: Scaffold

assembly_type: haploid

genome_rep: Full

group: bacteria

organism_name: Bifidobacteriaceae bacterium MCC01946

release_type: Major

version_status: latest


organism_name: Bifidobacteriaceae bacterium MCC01972


assembly_level: Contig

organism_name: Bifidobacteriaceae bacterium MCC01943


organism_name: Bifidobacteriaceae bacterium MCC01947


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: Bhabha Atomic Research Centre

assembly_level: Complete Genome

organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

paired_asm_comp: identical


organism_name: Bifidobacteriaceae bacterium MCC01975


organism_name: Bifidobacteriaceae bacterium MCC01941


organism_name: Bifidobacteriaceae bacterium MCC01992


organism_name: Bifidobacteriaceae bacterium MCC01950


organism_name: Bifidobacteriaceae bacterium MCC01951


organism_name: Bifidobacteriaceae bacterium MCC01994


organism_name: Bifidobacteriaceae bacterium MCC01993


organism_name: Bifidobacteriaceae bacterium MCC02030


organism_name: Bifidobacteriaceae bacterium MCC01954


organism_name: Bifidobacteriaceae bacterium MCC01976


organism_name: Bifidobacteriaceae bacterium MCC01953


organism_name: Bifidobacteriaceae bacterium MCC01957


organism_name: Bifidobacteriaceae bacterium MCC01977


organism_name: Bifidobacteriaceae bacterium MCC01958


organism_name: Bifidobacteriaceae bacterium MCC01959


organism_name: Bifidobacteriaceae bacterium MCC01963


organism_name: Bifidobacteriaceae bacterium MCC01978


organism_name: Bifidobacteriaceae bacterium MCC01961


organism_name: Bifidobacteriaceae bacterium MCC02031


organism_name: Bifidobacteriaceae bacterium MCC01995


organism_name: Bifidobacteriaceae bacterium MCC01964


organism_name: Bifidobacteriaceae bacterium MCC01970


organism_name: Bifidobacteriaceae bacterium MCC01966


organism_name: Bifidobacteriaceae bacterium MCC02032


organism_name: Bifidobacteriaceae bacterium MCC02033


organism_name: Bifidobacteriaceae bacterium MCC01983


organism_name: Bifidobacteriaceae bacterium MCC02034


organism_name: Bifidobacteriaceae bacterium MCC02035


organism_name: Bifidobacteriaceae bacterium MCC01979


organism_name: Bifidobacteriaceae bacterium MCC01996


organism_name: Bifidobacteriaceae bacterium MCC01967


organism_name: Bifidobacteriaceae bacterium MCC02036


organism_name: Bifidobacteriaceae bacterium MCC02037


organism_name: Bifidobacteriaceae bacterium MCC02038


organism_name: Bifidobacteriaceae bacterium MCC01986


organism_name: Bifidobacteriaceae bacterium MCC01988


organism_name: Bifidobacteriaceae bacterium MCC02039


organism_name: Bifidobacteriaceae bacterium MCC01984


organism_name: Bifidobacteriaceae bacterium MCC01998


organism_name: Bifidobacteriaceae bacterium MCC01989


organism_name: Bifidobacteriaceae bacterium MCC01990


organism_name: Bifidobacteriaceae bacterium MCC01969


organism_name: Bifidobacteriaceae bacterium MCC01968


annotation_name: Annotation submitted by NODAI Genome Research Center, Tokyo University of Agriculture

organism_name: Tetragenococcus halophilus


annotation_provider: NODAI Genome Research Center, Tokyo University of Agriculture


asm_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


asm_submitter: National Institute of Infectious Diseases

organism_name: Escherichia coli


annotation_name: Annotation submitted by Central Region Agricultural Research Center, NARO

organism_name: Lactobacillus corticis

refseq_category: reference genome

relation_to_type_material: assembly from type material


annotation_name: Annotation submitted by Laboratory of Plant Pathology, Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo

infraspecific_name: strain=HP

organism_name: Hydrangea phyllody phytoplasma


annotation_name: Annotation submitted by Biological Resource Center, National Institute of Technology and Evaluation (NBRC)

organism_name: Streptomyces sp. TS71-3


annotation_provider: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)

organism_name: Catellatospora sp. TT07R-123


asm_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)

excluded_from_refseq: unverified source organism

organism_name: Nonomuraea sp. TT08I-71


annotation_name: Annotation submitted by MORINAGA MILK INDUSTRY CO.,LTD.

annotation_provider: MORINAGA MILK INDUSTRY CO.,LTD.

asm_submitter: MORINAGA MILK INDUSTRY CO.,LTD.

organism_name: Faecalibacterium prausnitzii


annotation_name: Annotation submitted by Oita University

annotation_provider: Oita University

asm_submitter: Oita University

organism_name: Helicobacter pylori


excluded_from_refseq: from large multi-isolate project


annotation_name: Annotation submitted by National Institute of Advanced Industrial Science and Technology

organism_name: Roseiterribacter gracilis


annotation_name: Annotation submitted by Department of Bacteriology I, National Institute of Infectious Diseases

organism_name: Leptospira borgpetersenii


annotation_provider: Department of Bacteriology I, National Institute of Infectious Diseases


asm_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


annotation_name: Annotation submitted by Institute of Livestock and Grassland Science, NARO

infraspecific_name: strain=JCM 30710

organism_name: Clostridium polyendosporum


asm_submitter: Department of Microbiology, Juntendo University School of Medicine

organism_name: Bacillus sanguinis


organism_name: Bacillus paramobilis


organism_name: Bacillus hominis


annotation_name: Annotation submitted by Osaka Institute of Public Health

annotation_provider: Osaka Institute of Public Health

asm_submitter: Osaka Institute of Public Health

organism_name: Capnocytophaga stomatis


organism_name: Capnocytophaga cynodegmi


organism_name: Capnocytophaga canimorsus


organism_name: Capnocytophaga canis


infraspecific_name: strain=NBRC 12245

organism_name: Actinoplanes auranticolor


infraspecific_name: strain=NBRC 105043

organism_name: Salinispora arenicola


infraspecific_name: strain=NBRC 105298

organism_name: Paractinoplanes toevensis


infraspecific_name: strain=NBRC 14913

organism_name: Winogradskya consettensis


annotation_name: Annotation submitted by National Agriculture and Food Research Organization

organism_name: Shouchella clausii


annotation_provider: National Agriculture and Food Research Organization


asm_submitter: National Agriculture and Food Research Organization


organism_name: Siminovitchia fordii


organism_name: Bacillus licheniformis


organism_name: Heyndrickxia oleronia


organism_name: Bacillus paralicheniformis


organism_name: Lederbergia ruris


organism_name: Robertmurraya siralis


organism_name: Bacillus sonorensis


organism_name: Bacillus sp. J14TS2


organism_name: Bacillus sp. J41TS8


organism_name: Bacillus sp. J5TS4


excluded_from_refseq: genome length too large

organism_name: Heyndrickxia sporothermodurans


organism_name: Siminovitchia terrae


organism_name: Brevibacillus halotolerans


organism_name: Brevibacillus reuszeri


organism_name: Cohnella xylanilytica


organism_name: Oceanobacillus oncorhynchi subsp. incaldanensis


organism_name: Oceanobacillus sp. J11TS1


organism_name: Ornithinibacillus bavariensis


organism_name: Paenibacillus albilobatus


organism_name: Paenibacillus antibioticophila


organism_name: Paenibacillus apis


organism_name: Paenibacillus azoreducens


organism_name: Paenibacillus cineris


organism_name: Paenibacillus cookii


asm_submitter: University of Utah

excluded_from_refseq: derived from metagenome

organism_name: Dethiobacter sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Peptococcaceae bacterium


organism_name: Simkania sp.


group: archaea

organism_name: Nitrosarchaeum sp.


organism_name: Actinomycetota bacterium


organism_name: Bacteroidota bacterium


organism_name: Deltaproteobacteria bacterium


organism_name: Sphingomonadaceae bacterium


organism_name: Anaplasmataceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Hydrogenophaga sp.


organism_name: Bacillota bacterium


organism_name: Sulfuritalea sp.


organism_name: Syntrophaceae bacterium


organism_name: Melioribacter sp.


organism_name: Truepera sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Methylomicrobium sp.


organism_name: Lysobacteraceae bacterium


organism_name: Clostridia bacterium


organism_name: Syntrophomonadaceae bacterium


organism_name: Methylomonas sp.


organism_name: Sandarakinorhabdus sp.


organism_name: Erysipelotrichia bacterium


organism_name: Paracoccaceae bacterium


organism_name: Clostridiales bacterium


organism_name: Silanimonas sp.


organism_name: Dethiobacter sp.


organism_name: Peptococcaceae bacterium


organism_name: Actinomycetota bacterium


organism_name: Nitrosarchaeum sp.


asm_submitter: Sungkyunkwan University

organism_name: Pseudoalteromonas sp. BDTF-M6


organism_name: Devosia litorisediminis


organism_name: Sphingomonadales bacterium


asm_submitter: Sichuan University

organism_name: Proteus mirabilis


organism_name: Oleiphilaceae bacterium


organism_name: Wenzhouxiangellaceae bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Desulfobacterales bacterium


organism_name: Halanaerobiales bacterium


organism_name: Candidatus Bipolaricaulota bacterium


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Psychroflexus sp.


organism_name: Bacteroidales bacterium


organism_name: Candidatus Cloacimonadota bacterium


organism_name: Planctomycetota bacterium


organism_name: Thermoplasmatota archaeon


organism_name: Halodesulfurarchaeum sp.


organism_name: Hadesarchaea archaeon


organism_name: Anaerolineales bacterium


organism_name: Phycisphaerae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Thioalkalivibrio sp.


organism_name: Desulfovermiculus sp.


organism_name: Anaerolineae bacterium


organism_name: bacterium


organism_name: Candidatus Thorarchaeota archaeon


asm_submitter: University of Zurich

organism_name: Salmonella enterica subsp. enterica serovar Jerusalem


asm_submitter: UNIVERSIDADE CEUMA

organism_name: Klebsiella pneumoniae


asm_submitter: Nizhny Novgorod scientific and research institute of epidemiology and microbiology name acad.I.N. Bl

organism_name: Streptococcus pneumoniae


asm_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)

infraspecific_name: strain=TBRC 6

organism_name: Ameyamaea chiangmaiensis


organism_name: Hydrogenophaga sp.


asm_submitter: National Institute for Biotechnology and Genetic Engineering

organism_name: Tsukamurella paurometabola


organism_name: Afipia sp.


organism_name: Actinomycetota bacterium


organism_name: Bacteroidota bacterium


organism_name: Selenomonadales bacterium


organism_name: Dethiobacter sp.


organism_name: Erysipelothrix sp.


organism_name: Clostridium sp.


organism_name: Roseovarius sp.


organism_name: Ignavibacterium sp.


organism_name: Alkaliphilus sp.


organism_name: Desulfobulbaceae bacterium


organism_name: Clostridia bacterium


organism_name: Dechloromonas sp.


organism_name: Clostridiales bacterium


organism_name: Hyphomicrobiales bacterium


organism_name: Candidatus Latescibacterota bacterium


organism_name: Flavobacteriales bacterium


organism_name: Chitinophagaceae bacterium


organism_name: Ignavibacteriales bacterium


organism_name: Methylomonas sp.


organism_name: Algoriphagus sp.


organism_name: Thermaerobacter sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Bacteroidota bacterium


organism_name: Sulfurimonas sp.


organism_name: Bacteroidales bacterium


asm_submitter: Max Rubner-Institut

organism_name: Pseudomonas rustica


organism_name: Sulfuricella sp.


organism_name: Salmonella enterica subsp. enterica serovar Jerusalem


asm_submitter: National Center for Biotechnology Information

organism_name: Escherichia coli


asm_submitter: University of Kansas

organism_name: Chlamydia trachomatis


organism_name: Enterococcus faecium


asm_submitter: Shanghai Public Health Clinical Center

assembly_level: Chromosome

organism_name: Klebsiella pneumoniae


asm_submitter: EPFL

infraspecific_name: strain=ATCC 25872

organism_name: Vibrio cholerae O37


asm_submitter: Korea University Graduate School

organism_name: Salmonella enterica subsp. enterica serovar Dessau


asm_submitter: The University of Adelaide

organism_name: Romboutsia sp. 13154


organism_name: Romboutsia sp. 13368


organism_name: Proteus mirabilis


asm_submitter: Zhejiang University

organism_name: Staphylococcus aureus


asm_submitter: WIKIM

organism_name: Leuconostoc mesenteroides


organism_name: Romboutsia sp. 13432


asm_submitter: INSERM U1047

organism_name: Helcococcus kunzii


asm_submitter: School of Life Sciences and Biotechnology

organism_name: Psychrobacter pacificensis


asm_submitter: Nofima

organism_name: Listeria monocytogenes


asm_submitter: The University of Hong Kong

infraspecific_name: strain=OMZ 806

organism_name: Treponema vincentii


asm_submitter: Sir Run Run Shaw Hospital


asm_submitter: Zhejiang Academy of Agricultural Sciences

organism_name: Acinetobacter junii


annotation_name: Annotation submitted by University of Liverpool

annotation_provider: University of Liverpool

asm_submitter: University of Liverpool

organism_name: Streptococcus pneumoniae


asm_submitter: The First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China

organism_name: Chryseobacterium arthrosphaerae


asm_submitter: University of Montana

organism_name: Acaryochloris marina S15


asm_submitter: Andalas University

organism_name: Serratia plymuthica


asm_submitter: UFSC

organism_name: Marinomonas sp. A3A


organism_name: Marinomonas sp. CT5


asm_submitter: Korea Food Research Institute

organism_name: Akkermansia muciniphila


asm_submitter: University of Kansas

organism_name: Chlamydia trachomatis


asm_submitter: National Center for Biotechnology Information

infraspecific_name: strain=Bacterium

organism_name: Escherichia coli


isolate: Escherichia coli SYSUSCBC082


isolate: Escherichia coli SYSUSCAH103


isolate: Escherichia coli SYSUSCBC085


isolate: Escherichia coli SYSUSCAC061


isolate: Escherichia coli SYSUSCBH136


isolate: Escherichia coli SYSUSCBH176


isolate: Escherichia coli SYSUSCCA320


isolate: Escherichia coli SYSUSCAC126


isolate: Escherichia coli SYSUSCAD220


isolate: Escherichia coli SYSUSCAH100


organism_name: Salmonella enterica


isolate: Escherichia coli SYSUSCAC125


isolate: Escherichia coli SYSUSCAC129


isolate: Escherichia coli SYSUSCCB1903


isolate: Escherichia coli SYSUSCAD210


isolate: Escherichia coli SYSUSCAA248


isolate: Escherichia coli SYSUSCAH095


asm_submitter: Center for Food Safety and Applied Nutrition

organism_name: Salmonella enterica subsp. enterica serovar Eastbourne str. CFSAN001084


organism_name: Salmonella enterica subsp. enterica serovar Javiana


organism_name: Salmonella enterica subsp. enterica serovar Havana str. CFSAN001082


organism_name: Salmonella enterica subsp. enterica serovar Cubana str. CFSAN001083


organism_name: Salmonella enterica subsp. enterica serovar London str. CFSAN001081


organism_name: Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000755


infraspecific_name: strain=ATCC 35640

organism_name: Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640


organism_name: Salmonella enterica subsp. enterica serovar Javiana str. CFSAN000905


infraspecific_name: strain=SGSC 2528

organism_name: Salmonella enterica subsp. enterica serovar Wien str. CFSAN000656


infraspecific_name: strain=SGSC 2217

organism_name: Salmonella enterica subsp. enterica serovar Heidelberg str. SARA37


organism_name: Salmonella enterica subsp. enterica serovar Newport str. WA_14882


infraspecific_name: strain=ATCC 8391

organism_name: Salmonella enterica subsp. enterica serovar Thompson str. ATCC 8391


infraspecific_name: strain=ATCC 7378

organism_name: Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378


infraspecific_name: strain=SGSC 3121

organism_name: Salmonella enterica subsp. VII str. CFSAN000554


infraspecific_name: strain=SGSC 2206

organism_name: Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26


infraspecific_name: strain=SGSC 2470

organism_name: Salmonella enterica subsp. enterica serovar Dublin str. CFSAN000517


organism_name: Salmonella enterica


infraspecific_name: strain=SGSC 2494

organism_name: Salmonella enterica subsp. enterica serovar Newport str. CFSAN000598


infraspecific_name: strain=SGSC 2508

organism_name: Salmonella enterica subsp. enterica serovar Pullorum str. CFSAN000606


infraspecific_name: strain=SGSC 2468

organism_name: Salmonella enterica subsp. enterica serovar Derby str. CFSAN000565


infraspecific_name: strain=SGSC 2504

organism_name: Salmonella enterica subsp. enterica serovar Paratyphi B str. CFSAN000549


infraspecific_name: strain=SGSC 2469

organism_name: Salmonella enterica subsp. enterica serovar Dublin str. CFSAN000516


infraspecific_name: strain=SGSC 3100

organism_name: Salmonella bongori CFSAN000510


infraspecific_name: strain=SGSC 2503

organism_name: Salmonella enterica subsp. enterica serovar Paratyphi B str. CFSAN000548


infraspecific_name: strain=SGSC 2501

organism_name: Salmonella enterica subsp. enterica serovar Paratyphi B str. CFSAN000546


infraspecific_name: strain=SGSC 2500

organism_name: Salmonella enterica subsp. enterica serovar Paratyphi B str. CFSAN000545


infraspecific_name: strain=SGSC 2462

organism_name: Salmonella enterica subsp. enterica serovar Choleraesuis str. CFSAN000514


infraspecific_name: strain=SGSC 2459

organism_name: Salmonella enterica subsp. enterica serovar Anatum str. CFSAN000511


organism_name: Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000224


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis str. 607307-2


organism_name: Salmonella enterica subsp. enterica serovar Potsdam


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Minnesota


organism_name: Salmonella enterica subsp. enterica serovar Brandenburg


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Rubislaw


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Newport


asm_submitter: USDA FSIS

organism_name: Campylobacter coli


organism_name: Salmonella enterica subsp. enterica serovar Sandiego


organism_name: Salmonella enterica subsp. enterica serovar Itami


organism_name: Salmonella enterica subsp. enterica serovar Irumu


organism_name: Salmonella enterica subsp. enterica serovar Hartford


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Salmonella enterica subsp. enterica serovar Muenster


organism_name: Salmonella enterica subsp. enterica serovar Buzu


organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Salmonella enterica subsp. enterica serovar Javiana


organism_name: Salmonella enterica subsp. enterica serovar Senftenberg


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Minnesota


organism_name: Salmonella enterica subsp. enterica serovar Give var. 15 str. CFSAN004343


organism_name: Salmonella enterica subsp. enterica serovar Meleagridis str. 0047


organism_name: Salmonella enterica subsp. enterica


infraspecific_name: strain=SGSC 2485

organism_name: Salmonella enterica subsp. enterica serovar Miami str. 1923


asm_submitter: University of Gothenburg - CCUG

organism_name: Stutzerimonas balearica


asm_submitter: UiT - The Arctic University of Norway

organism_name: Cobetia sp. MC34


organism_name: Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992


infraspecific_name: strain=4441 H

organism_name: Salmonella enterica subsp. enterica serovar Montevideo str. 4441 H


organism_name: Salmonella enterica subsp. enterica serovar Soerenga str. 695


organism_name: Salmonella enterica subsp. enterica serovar Nchanga str. CFSAN001091


organism_name: Salmonella enterica subsp. enterica serovar Derby str. 626


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Weltevreden


organism_name: Salmonella enterica subsp. enterica serovar Muenchen


asm_submitter: National University of Sciences & Technology

excluded_from_refseq: contaminated

organism_name: Klebsiella pneumoniae


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Salmonella enterica subsp. enterica serovar Johannesburg


organism_name: Salmonella enterica subsp. enterica serovar Infantis


asm_submitter: French Agency for Food, Environmental and Occupational Health & Safety

organism_name: Salmonella enterica subsp. enterica serovar Bovismorbificans


asm_submitter: Oita University

organism_name: Helicobacter pylori


asm_submitter: FDA

isolate: misssing

organism_name: Shigella sonnei


asm_submitter: CDC

organism_name: Escherichia coli


asm_submitter: Hospital 12 de Octubre

organism_name: Pseudomonas aeruginosa


asm_submitter: University of Milano

organism_name: Pseudomonas carnis


asm_submitter: INTA

organism_name: Citrobacter sp. FP75


infraspecific_name: strain=PD


annotation_name: Annotation submitted by University of Vienna

annotation_provider: University of Vienna

asm_submitter: University of Vienna

organism_name: Neochlamydia sp. AcF65


organism_name: Neochlamydia sp. AcF95


organism_name: Parachlamydia sp. AcF125


organism_name: Candidatus Protochlamydia amoebophila


asm_submitter: Fujian Academy of Agricultural Sciences

organism_name: Bacillus sp. FJAT-50079


organism_name: Lederbergia citrea


organism_name: Neobacillus rhizophilus


organism_name: Neobacillus citreus


organism_name: Bacillus sp. FJAT-49736


organism_name: Lederbergia citri


organism_name: Cytobacillus citreus


organism_name: Lederbergia citrisecunda


organism_name: Bacillus sp. FJAT-49711


organism_name: Escherichia coli


asm_submitter: Yunnan Academy of Tobacco Agriculture Science

infraspecific_name: strain=DSM 50259

organism_name: Pseudomonas cichorii


asm_submitter: Norwegian Veterinary Institute

infraspecific_name: strain=NVIO 9100

organism_name: Phocoenobacter atlanticus subsp. cyclopteri


asm_submitter: Mahidol University

infraspecific_name: strain=No. 12

organism_name: Chlamydia crocodili


asm_submitter: University of North Carolina at Chapel Hill


asm_submitter: Aarhus University

organism_name: Rhodococcus sp. USK13


asm_submitter: University of Aveiro

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

infraspecific_name: strain=Y15 V.22


asm_submitter: University of Liege


asm_submitter: C. vulpis

organism_name: Campylobacter vulpis


asm_submitter: Federation Nationale des Producteurs de Plants de Pomme de Terre (FN3PT)- Inov3PT

organism_name: Pectobacterium punjabense


infraspecific_name: strain=Y15 V.54


asm_submitter: National Center for Biotechnology Information

isolate: pair B, canine host, pet, followup, no. 3


isolate: pair A, human host, no. 20


isolate: bloodstream infection patient


isolate: pair A, canine host, pet, no. 10


isolate: pair A, canine host, pet, no. 13


isolate: pair A, canine host, pet, no. 12


isolate: pair B, canine host, pet, no.4


isolate: pair A, canine host, pet, no. 14


isolate: pair A, human host, no. 18


isolate: pair B, canine host, pet, no.7


isolate: pair A, human host, no. 21


isolate: pair A, canine host, pet, no. 11


isolate: pair B, canine host, pet, no.6


isolate: Escherichia coli


asm_submitter: NARMS Diversity Expansion Picks


isolate: Escherichia coli (commensal)


asm_submitter: CDC

organism_name: Salmonella enterica


organism_name: Shigella flexneri


isolate: pair A, human host, no. 17


isolate: pair B, canine host, pet, no.5


asm_submitter: FDA

organism_name: Campylobacter jejuni


infraspecific_name: strain=Escherichia coli


organism_name: Enterococcus faecium


isolate: pair A, human host, no. 19


asm_submitter: Austrian Agency for Health and Food Safety

organism_name: Cronobacter sakazakii


asm_submitter: University of Donja Gorica

organism_name: Lactococcus garvieae


asm_submitter: China CDC

organism_name: Tuanshanicoccus lijuaniae


organism_name: Lactococcus petauri


organism_name: Tuanshanicoccus yangjingiae


annotation_name: Annotation submitted by NA

asm_submitter: University of Southern Queensland

organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens


asm_submitter: University of Antwerpen

organism_name: Klebsiella pneumoniae


infraspecific_name: strain=EPEC

organism_name: Escherichia coli


infraspecific_name: strain=STEC


infraspecific_name: strain=ETEC


infraspecific_name: strain=EAEC


asm_submitter: USDA FSIS


asm_submitter: DuPont Nutrition and Biosciences

infraspecific_name: strain=ATCC 202195

organism_name: Lactiplantibacillus plantarum


asm_submitter: Public Health England

organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: Health Protection Agency

organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Bredeney


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica


asm_submitter: FDA/CFSAN


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Johannesburg


organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi B var. L(+) tartrate +


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Salmonella enterica subsp. enterica serovar Durban


organism_name: Salmonella enterica subsp. enterica serovar London


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


organism_name: Salmonella enterica subsp. enterica serovar Essen


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


asm_submitter: FDA Center for Food Safety and Applied Nutrition


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Weltevreden


organism_name: Salmonella enterica subsp. enterica serovar Matopeni


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Citrobacter koseri


organism_name: Campylobacter coli


organism_name: Salmonella enterica


organism_name: Shigella flexneri


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Ohio


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Eko


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Oranienburg


isolate: pig


isolate: liquid manure


excluded_from_refseq: contaminated; from large multi-isolate project


isolate: UPEC


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Worthington


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica serovar Hadar


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


organism_name: Citrobacter koseri


organism_name: Acinetobacter baumannii


organism_name: Enterobacter hormaechei


asm_submitter: UNIVERSIDAD EL BOSQUE

organism_name: Klebsiella pneumoniae


asm_submitter: Embrapa Suinos e Aves

organism_name: Salmonella enterica subsp. enterica serovar Choleraesuis


asm_submitter: Institut d'Investigacio Biomedica Sant Pau

organism_name: Aeromonas veronii


organism_name: Aeromonas caviae


organism_name: Aeromonas dhakensis


infraspecific_name: strain=ATCC 35624

organism_name: Aeromonas veronii bv. veronii


organism_name: Aeromonas media


infraspecific_name: strain=CIP 74.33

organism_name: Aeromonas sobria


organism_name: Aeromonas allosaccharophila


infraspecific_name: strain=ATCC 33907


infraspecific_name: strain=CECT 838


infraspecific_name: strain=ATCC 7966

organism_name: Aeromonas hydrophila


asm_submitter: University of Maine

organism_name: Dickeya dianthicola


asm_submitter: Korea Institute of Geoscience and Mineral Resources

organism_name: Mycobacterium sp. SM1


asm_submitter: South China University of Technology

organism_name: Bacillus velezensis


asm_submitter: UKZN


asm_submitter: Federal University of Rio de Janeiro

organism_name: Bacillus safensis


asm_submitter: Universidade Federal do Rio de Janeiro

organism_name: Escherichia coli


asm_submitter: Rural Development Administration

organism_name: Bacillus altitudinis


asm_submitter: Northumbria University

organism_name: Corynebacterium pseudotuberculosis


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


asm_submitter: CDC

organism_name: Salmonella enterica


asm_submitter: Public Health England

organism_name: Salmonella enterica subsp. enterica serovar Typhi


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A


asm_submitter: USDA FSIS

organism_name: Campylobacter coli


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


organism_name: Shigella flexneri


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


organism_name: Salmonella enterica subsp. enterica serovar Brandenburg


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Javiana


asm_submitter: CRCHUM

organism_name: Alistipes montrealensis


asm_submitter: China CDC

organism_name: Nocardioides faecalis


organism_name: Carnobacteriaceae bacterium zg-ZUI78


organism_name: Carnobacteriaceae bacterium zg-ZUI240


organism_name: Carnobacteriaceae bacterium zg-ZUI252


asm_submitter: University of California, Berkeley

organism_name: Burkholderiales bacterium


organism_name: Clostridium sp.


organism_name: Brachyspira sp.


organism_name: Pseudomonadota bacterium


asm_submitter: West China Hospital, Sichuan University

excluded_from_refseq: many frameshifted proteins

infraspecific_name: strain=CFH S0057

organism_name: Nocardia tengchongensis


asm_submitter: National Institute of Horticultural and Herbal Science , Rural Development Administration (RDA)

organism_name: Chryseobacterium indologenes


asm_submitter: Renmin Hospital of Wuhan University

organism_name: Mycolicibacterium neoaurum


asm_submitter: UPS-IUT Paul SABATIER

organism_name: Bacillus amyloliquefaciens


asm_submitter: Kyung Hee University

organism_name: Lacticaseibacillus zeae


organism_name: Lacticaseibacillus chiayiensis


organism_name: Lacticaseibacillus casei


organism_name: Escherichia coli


organism_name: Bacteroides sp.


organism_name: Parabacteroides merdae


organism_name: Bacteroides salyersiae


organism_name: Paraprevotella sp.


organism_name: Phocaeicola massiliensis


organism_name: Burkholderiales bacterium


organism_name: Clostridium sp.


organism_name: Clostridioides difficile


organism_name: Haemophilus parainfluenzae


organism_name: Collinsella sp.


organism_name: Bacteroides faecis


organism_name: Streptococcus salivarius


organism_name: Clostridiales bacterium


organism_name: Parabacteroides sp.


organism_name: Bifidobacterium animalis


organism_name: Stenotrophomonas maltophilia


organism_name: Ruminococcus callidus


organism_name: Pseudomonas aeruginosa


organism_name: Actinomyces sp. oral taxon 181


organism_name: Eubacterium limosum


organism_name: Bacillota bacterium


organism_name: Eubacterium sp.


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Actinomyces sp.


organism_name: Atopobium minutum


organism_name: Atopobium sp.


organism_name: Peptoniphilus harei


organism_name: Amedibacillus dolichus


organism_name: Gordonibacter pamelaeae


organism_name: Anaerococcus vaginalis


organism_name: Peptoniphilus sp. oral taxon 375


organism_name: Veillonella sp.


organism_name: Coprobacillus sp.


organism_name: Clostridiales bacterium


organism_name: Veillonella parvula


organism_name: Subdoligranulum variabile


organism_name: Ruminococcus sp.


organism_name: Streptococcus sp.


organism_name: Lachnospiraceae bacterium


organism_name: Allocoprococcus comes


organism_name: Faecalibacterium prausnitzii


organism_name: Lactobacillus delbrueckii


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Anaerostipes sp.


organism_name: Streptococcus salivarius


organism_name: Rothia mucilaginosa


organism_name: Actinomyces sp.


organism_name: Neisseria mucosa


organism_name: Clostridium sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small


organism_name: Actinomyces graevenitzii


organism_name: Streptococcus mitis


organism_name: Lacticaseibacillus rhamnosus


organism_name: Granulicatella adiacens


organism_name: Phocaeicola dorei


organism_name: Klebsiella pneumoniae


organism_name: Lachnospiraceae bacterium


organism_name: Clostridiales bacterium


organism_name: Veillonella sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Clostridium celatum


organism_name: Hungatella hathewayi


organism_name: Eubacterium sp.


organism_name: Anaerotruncus colihominis


organism_name: Roseburia sp.


organism_name: Holdemania filiformis


organism_name: Streptococcus thermophilus


organism_name: Haemophilus parainfluenzae


organism_name: Actinomyces sp.


organism_name: Enterobacter sp.


organism_name: Streptococcus mitis


organism_name: Alistipes sp.


organism_name: Bifidobacterium longum


organism_name: Eubacterium ventriosum


organism_name: Dialister invisus


organism_name: Bacillota bacterium


organism_name: Clostridiales bacterium


organism_name: Ruminococcus sp.


organism_name: Peptostreptococcaceae bacterium


organism_name: Collinsella sp.


organism_name: Dialister sp.


organism_name: Fusobacterium sp.


organism_name: Desulfovibrionaceae bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: Bacteroides sp.


organism_name: Streptococcus sp.


organism_name: Streptococcus parasanguinis


organism_name: Roseburia hominis


organism_name: Hungatella hathewayi


organism_name: Veillonella sp.


organism_name: Lacticaseibacillus rhamnosus


organism_name: Haemophilus parainfluenzae


organism_name: Streptococcus lutetiensis


organism_name: Clostridiaceae bacterium


organism_name: Streptococcus salivarius


organism_name: Lachnospiraceae bacterium


organism_name: Roseburia sp.


organism_name: Dorea sp.


organism_name: Phocaeicola vulgatus


organism_name: Eggerthella sp.


organism_name: Staphylococcus aureus


organism_name: Clostridium sp.


organism_name: Rothia mucilaginosa


organism_name: Coprobacillus cateniformis


organism_name: Erysipelotrichaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Blautia sp.


organism_name: Collinsella intestinalis


organism_name: Bacillota bacterium


organism_name: Butyricicoccus pullicaecorum


organism_name: Veillonella sp.


organism_name: Veillonella parvula


organism_name: Escherichia coli


organism_name: Klebsiella variicola


organism_name: Haemophilus parainfluenzae


organism_name: Streptococcus agalactiae


organism_name: Klebsiella oxytoca


organism_name: Corynebacterium sp.


organism_name: Anaerotruncus sp.


organism_name: Lachnospiraceae bacterium


organism_name: Streptococcus salivarius


organism_name: Morganella morganii


organism_name: Klebsiella sp.


organism_name: Fusobacterium nucleatum


organism_name: Clostridiales bacterium


organism_name: Bacteroides ovatus


organism_name: Acinetobacter sp.


organism_name: Megasphaera sp.


organism_name: Sutterella wadsworthensis


organism_name: Subdoligranulum sp.


organism_name: Parasutterella sp.


organism_name: Collinsella sp.


organism_name: Streptococcus sp.


organism_name: Lactobacillus gasseri


organism_name: Roseburia sp.


organism_name: Enterococcus faecium


organism_name: Streptococcus parasanguinis


organism_name: Streptococcus salivarius


organism_name: Hungatella hathewayi


organism_name: Bacillota bacterium


organism_name: Actinomyces graevenitzii


organism_name: Oscillospiraceae bacterium


organism_name: Cutibacterium granulosum


organism_name: Lachnospira eligens


organism_name: Haemophilus parainfluenzae


organism_name: Cutibacterium acnes


organism_name: Clostridiales bacterium


organism_name: Eubacterium sp.


excluded_from_refseq: unverified source organism; derived from metagenome; genus undefined

organism_name: butyrate-producing bacterium


organism_name: Butyricicoccus pullicaecorum


organism_name: Veillonella sp.


organism_name: Erysipelotrichaceae bacterium


organism_name: Collinsella sp.


organism_name: Bifidobacterium longum


organism_name: Clostridium sp.


organism_name: Prevotella sp.


organism_name: Sutterella wadsworthensis


organism_name: Bacillota bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Clostridiaceae bacterium


organism_name: Gemella haemolysans


organism_name: Lachnospiraceae bacterium


organism_name: Atopobium sp.


organism_name: Subdoligranulum variabile


organism_name: Alistipes putredinis


organism_name: Lactobacillus acidophilus


organism_name: Limosilactobacillus oris


organism_name: Veillonella sp.


organism_name: Streptococcus sp.


organism_name: Bifidobacterium catenulatum


organism_name: Megasphaera micronuciformis


organism_name: Actinomyces sp. oral taxon 181


organism_name: Lactobacillus gasseri


organism_name: Streptococcus parasanguinis


organism_name: Streptococcus mitis


organism_name: Finegoldia magna


organism_name: Clostridium sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Coprobacillus cateniformis


organism_name: Bilophila wadsworthia


organism_name: Eubacterium sp.


organism_name: butyrate-producing bacterium


organism_name: Bacillota bacterium


organism_name: Escherichia coli


organism_name: Clostridiales bacterium


organism_name: Veillonella sp.


organism_name: Lacticaseibacillus rhamnosus


organism_name: Bifidobacterium sp.


organism_name: Collinsella sp.


organism_name: Lachnospiraceae bacterium


organism_name: Bacteroides thetaiotaomicron


organism_name: Dorea longicatena


organism_name: Bilophila sp.


organism_name: Enterocloster sp.


organism_name: Clostridium sp.


organism_name: Agathobacter rectalis


organism_name: Prevotella sp.


organism_name: Alistipes sp.


organism_name: Coprobacillus sp.


organism_name: Streptococcus sp.


organism_name: Roseburia sp.


organism_name: Subdoligranulum variabile


organism_name: Coriobacteriia bacterium


organism_name: Bacteroides sp.


organism_name: Streptococcus salivarius


organism_name: Collinsella sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Bacillota bacterium


organism_name: Ruminococcus sp.


organism_name: Clostridiales bacterium


organism_name: Eubacterium sp.


organism_name: Parabacteroides sp.


organism_name: Blautia sp.


organism_name: Roseburia intestinalis


organism_name: Akkermansia sp.


organism_name: Bacteroides intestinalis


organism_name: Collinsella stercoris


organism_name: Eggerthella sp.


organism_name: Clostridium sp.


organism_name: Oscillospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Lachnospiraceae bacterium


organism_name: Alistipes sp.


organism_name: Sutterella wadsworthensis


organism_name: Prevotella sp.


organism_name: bacterium


organism_name: Clostridiales bacterium


excluded_from_refseq: unverified source organism; annotation fails MAG completeness check; derived from metagenome

organism_name: Acidaminococcus intestini


organism_name: Ruminococcus sp.


organism_name: Phocaeicola plebeius


organism_name: Bacteroides sp.


organism_name: Streptococcus mitis


organism_name: Bacteroides fragilis


organism_name: Bifidobacterium longum


organism_name: Haemophilus parainfluenzae


organism_name: Bacillota bacterium


organism_name: Clostridium sp.


organism_name: Megasphaera sp.


organism_name: Escherichia coli


organism_name: Catenibacterium sp.


organism_name: Thomasclavelia spiroformis


organism_name: Lactococcus lactis


organism_name: Hoylesella buccalis


organism_name: Coprobacillus cateniformis


organism_name: Peptostreptococcus sp.


organism_name: Enterocloster asparagiformis


organism_name: Clostridiales bacterium


organism_name: Bacteroides sp.


organism_name: Eubacterium sp.


organism_name: Porphyromonadaceae bacterium


organism_name: Dorea sp.


organism_name: Alistipes sp.


organism_name: Lachnospiraceae bacterium


organism_name: butyrate-producing bacterium


organism_name: Oscillibacter sp.


organism_name: Bacillota bacterium


organism_name: Collinsella sp.


organism_name: Roseburia sp.


organism_name: Clostridium sp.


organism_name: Bacteroides cellulosilyticus


organism_name: Butyricicoccus pullicaecorum


organism_name: Faecalibacterium prausnitzii


organism_name: Bifidobacterium dentium


organism_name: [Clostridium] innocuum


organism_name: Veillonella sp.


organism_name: Ruminococcus sp.


organism_name: Agathobacter rectalis


organism_name: Megasphaera micronuciformis


organism_name: Faecalibacterium sp.


organism_name: Actinomyces sp.


organism_name: Clostridiales bacterium


organism_name: Eggerthella sp.


organism_name: [Eubacterium] siraeum


organism_name: Collinsella intestinalis


organism_name: Adlercreutzia equolifaciens


organism_name: Actinotignum schaalii


organism_name: Streptococcus sp.


organism_name: Propionibacterium sp.


organism_name: Actinomyces sp. oral taxon 181


organism_name: Neisseria sp.


organism_name: Veillonella parvula


organism_name: Bacteroides sp.


organism_name: Streptococcus parasanguinis


organism_name: Enterobacter cloacae


organism_name: Finegoldia magna


organism_name: Veillonella sp.


organism_name: Lachnospiraceae bacterium


organism_name: Fusobacterium sp.


organism_name: Acholeplasma sp.


organism_name: Clostridioides difficile


organism_name: Clostridium sp.


organism_name: Megamonas sp.


organism_name: Dysgonomonas mossii


organism_name: Clostridiales bacterium


organism_name: Clostridium argentinense


organism_name: Acinetobacter sp.


organism_name: Sutterella sp.


organism_name: Enterococcus gilvus


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome


excluded_from_refseq: derived from metagenome

organism_name: Desulfovibrio piger


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Bacillota bacterium


organism_name: Brachyspira sp.


organism_name: Campylobacter concisus


organism_name: Enterococcus casseliflavus


organism_name: Actinomyces sp.


organism_name: Proteus mirabilis


organism_name: Lactobacillus jensenii


organism_name: Pseudomonas putida


organism_name: Ureaplasma parvum


organism_name: Neisseria sp.


organism_name: Staphylococcus sp.


organism_name: Clostridiales bacterium


organism_name: Clostridium sp.


organism_name: Pseudomonas sp.


organism_name: Acetobacter sp.


organism_name: bacterium


organism_name: Alistipes indistinctus


organism_name: Coriobacteriaceae bacterium


organism_name: Fusobacterium periodonticum


organism_name: Lachnoanaerobaculum sp.


organism_name: Prevotella sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Porphyromonas sp.


organism_name: Negativicoccus succinicivorans


organism_name: Paenibacillus macerans


organism_name: Acetobacteraceae bacterium


organism_name: Actinomycetaceae bacterium


organism_name: Proteus mirabilis


organism_name: Dysgonomonas mossii


organism_name: Segatella buccae


organism_name: Prevotella histicola


organism_name: Clostridiales bacterium


organism_name: Clostridium perfringens


organism_name: Varibaculum cambriense


organism_name: Clostridium sp.


organism_name: Veillonella sp.


organism_name: Enterococcus durans


organism_name: Finegoldia magna


organism_name: Peptoniphilus harei


organism_name: Ligilactobacillus salivarius


organism_name: Paraclostridium bifermentans


organism_name: Enterococcus gallinarum


organism_name: Winkia neuii


organism_name: Akkermansia muciniphila


organism_name: Actinomyces urogenitalis


organism_name: Clostridium butyricum


organism_name: Citrobacter sp.


organism_name: Clostridium baratii


organism_name: Acinetobacter baumannii


organism_name: Haemophilus haemolyticus


organism_name: Enterococcus faecium


organism_name: Corynebacterium sp.


organism_name: Enterobacter cloacae


organism_name: Anaerococcus hydrogenalis


organism_name: Haemophilus parahaemolyticus


organism_name: Haemophilus parainfluenzae


organism_name: Enterococcus avium


organism_name: Peptostreptococcaceae bacterium


organism_name: Kocuria rhizophila


organism_name: Neisseria sp.


organism_name: Staphylococcus epidermidis


organism_name: Pantoea sp.


organism_name: Stenotrophomonas maltophilia


organism_name: Actinomyces urogenitalis


organism_name: Negativicoccus succinicivorans


organism_name: Neisseria mucosa


organism_name: Haemophilus pittmaniae


organism_name: Limosilactobacillus fermentum


organism_name: Paraclostridium sordellii


organism_name: Pseudomonas sp.


organism_name: Haemophilus haemolyticus


organism_name: Serratia marcescens


organism_name: Staphylococcus sp.


organism_name: Citrobacter freundii


organism_name: Leptotrichia wadei


organism_name: Pseudomonas fluorescens


organism_name: Staphylococcus warneri


organism_name: Streptococcus vestibularis


organism_name: Enterocloster bolteae


organism_name: Collinsella sp.


organism_name: Subdoligranulum variabile


organism_name: Megasphaera sp.


organism_name: Alistipes sp.


organism_name: Veillonella sp.


organism_name: Actinomyces sp.


organism_name: Enterobacter cloacae


organism_name: Thomasclavelia spiroformis


organism_name: Anaerococcus sp.


organism_name: Streptococcus salivarius


organism_name: Clostridiales bacterium


organism_name: Veillonella parvula


organism_name: Bifidobacterium longum


organism_name: Klebsiella aerogenes


organism_name: Faecalibacterium prausnitzii


organism_name: Bilophila sp.


organism_name: Sutterella sp.


organism_name: Campylobacter gracilis


organism_name: [Ruminococcus] lactaris


organism_name: Collinsella sp.


organism_name: Bacillota bacterium


organism_name: Enterococcus hirae


organism_name: Erysipelotrichaceae bacterium


organism_name: Clostridium celatum


organism_name: Veillonella sp.


organism_name: Haemophilus parainfluenzae


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Oscillibacter sp.


organism_name: Dialister invisus


organism_name: Bifidobacterium catenulatum


organism_name: Proteus hauseri


organism_name: Clostridiales bacterium


organism_name: [Clostridium] symbiosum


organism_name: Staphylococcus aureus


organism_name: Parabacteroides johnsonii


organism_name: Clostridium sp.


organism_name: Holdemanella biformis


organism_name: Sutterella wadsworthensis


organism_name: Roseburia sp.


organism_name: Streptococcus sp.


organism_name: Bacteroides sp.


organism_name: Eggerthella sp.


organism_name: Megasphaera sp.


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Tannerella sp.


organism_name: Propionibacterium sp.


organism_name: Clostridiaceae bacterium


organism_name: Anaerostipes sp.


organism_name: Actinomycetaceae bacterium


organism_name: Streptococcus salivarius


organism_name: Veillonella sp.


organism_name: Oscillibacter sp.


organism_name: Oscillospiraceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Prevotella sp.


organism_name: Campylobacter concisus


organism_name: Lachnospira eligens


organism_name: Haemophilus parainfluenzae


organism_name: Bacteroides uniformis


organism_name: Dialister sp.


organism_name: Alistipes sp.


organism_name: Bacillota bacterium


organism_name: Ruminococcus sp.


organism_name: Clostridium sp.


organism_name: [Eubacterium] siraeum


organism_name: Propionibacterium sp.


organism_name: Prevotella bivia


organism_name: Eubacterium limosum


organism_name: Veillonella sp.


organism_name: Actinomyces sp.


organism_name: Bacteroides ovatus


organism_name: Oscillospiraceae bacterium


organism_name: Burkholderia sp.


organism_name: Oscillibacter sp.


organism_name: Bifidobacterium pseudolongum


organism_name: Bifidobacterium bifidum


organism_name: Alloscardovia omnicolens


organism_name: Phocaeicola vulgatus


organism_name: Akkermansia muciniphila


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Clostridiales bacterium


organism_name: Actinomycetaceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Weissella confusa


organism_name: Erysipelotrichaceae bacterium


organism_name: Atopobium sp.


organism_name: Veillonella dispar


organism_name: Veillonella sp.


organism_name: Enterobacter sp.


organism_name: Streptococcus sp.


organism_name: Bifidobacterium breve


organism_name: Bacillota bacterium


organism_name: Atopobiaceae bacterium


organism_name: Bacteroides sp.


organism_name: Tannerella sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Dialister sp.


organism_name: Collinsella sp.


organism_name: Clostridioides difficile


organism_name: Faecalimonas nexilis


organism_name: Olsenella uli


organism_name: Collinsella intestinalis


organism_name: Limosilactobacillus reuteri


organism_name: Pantoea sp.


organism_name: Ruminococcus sp.


organism_name: Enterococcus raffinosus


organism_name: Mycobacteriales bacterium


organism_name: Rothia mucilaginosa


organism_name: Streptococcus sp.


organism_name: Veillonella sp. oral taxon 158


organism_name: Clostridiales bacterium


organism_name: Coprobacillus sp.


organism_name: Holdemanella biformis


organism_name: Clostridium sp.


organism_name: Butyrivibrio sp.


organism_name: Candidatus Apopatosoma intestinale


organism_name: Bacillota bacterium


organism_name: Alistipes sp.


organism_name: Bacteroides sp.


organism_name: [Eubacterium] siraeum


organism_name: Acetobacter sp.


organism_name: Collinsella sp.


organism_name: Klebsiella oxytoca


organism_name: Veillonella sp.


organism_name: Citrobacter freundii


organism_name: Slackia sp.


organism_name: Dialister sp.


organism_name: Paraclostridium bifermentans


organism_name: Streptococcus vestibularis


organism_name: Clostridiales bacterium


organism_name: Staphylococcus aureus


organism_name: Clostridium sp.


organism_name: Bacteroides caccae


organism_name: Peptoniphilaceae bacterium


organism_name: Streptococcus salivarius


organism_name: Peptoniphilus harei


organism_name: Bifidobacterium longum


organism_name: Streptococcus parasanguinis


organism_name: Oscillospiraceae bacterium


organism_name: Butyricicoccus pullicaecorum


organism_name: Subdoligranulum variabile


organism_name: Faecalibacterium prausnitzii


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Veillonella sp.


organism_name: Collinsella stercoris


organism_name: Bacteroides sp.


organism_name: Roseburia sp.


organism_name: Staphylococcus sp.


organism_name: Klebsiella michiganensis


organism_name: Parabacteroides goldsteinii


organism_name: Clostridiales bacterium


organism_name: Faecalibacterium sp.


organism_name: Subdoligranulum sp.


organism_name: Oscillibacter sp.


organism_name: Collinsella sp.


organism_name: Coprococcus sp.


organism_name: Ruminococcus sp.


organism_name: Eubacterium sp.


organism_name: Odoribacter splanchnicus


organism_name: Ruminococcus callidus


organism_name: Brachyspira sp.


organism_name: Clostridium sp.


organism_name: Collinsella intestinalis


organism_name: Lachnospiraceae bacterium


organism_name: Sutterella wadsworthensis


organism_name: Faecalibacterium prausnitzii


organism_name: Varibaculum cambriense


organism_name: Peptoniphilus harei


organism_name: Veillonella parvula


organism_name: Anaerotruncus sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Veillonella sp. oral taxon 780


organism_name: Clostridiaceae bacterium


organism_name: Clostridiales bacterium


organism_name: Actinomyces graevenitzii


organism_name: Thomasclavelia spiroformis


organism_name: Roseburia sp.


organism_name: Veillonella sp.


organism_name: Haemophilus paraphrohaemolyticus


organism_name: Eubacterium sp.


organism_name: Coprobacillus sp.


organism_name: Haemophilus parainfluenzae


organism_name: Streptococcus sp.


organism_name: Lactobacillus gasseri


organism_name: Actinomyces sp.


organism_name: Bacteroides stercoris


organism_name: Rothia mucilaginosa


organism_name: Lacticaseibacillus paracasei


organism_name: Bifidobacterium adolescentis


organism_name: Prevotella histicola


organism_name: Bacteroides eggerthii


organism_name: Alistipes putredinis


organism_name: Sanguibacteroides justesenii


organism_name: Bacillota bacterium


organism_name: Clostridiales bacterium


organism_name: Alistipes indistinctus


organism_name: Collinsella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Dialister sp.


organism_name: Ruminococcus sp.


organism_name: Blautia sp.


organism_name: Bifidobacterium longum


organism_name: Lachnospiraceae bacterium


organism_name: Atopobium sp.


organism_name: Streptococcus salivarius


organism_name: Veillonella sp.


organism_name: Haemophilus parainfluenzae


organism_name: Peptoniphilus harei


organism_name: Lachnospiraceae bacterium oral taxon 082


organism_name: Streptococcus parasanguinis


organism_name: Enterobacteriaceae bacterium


organism_name: Bacillota bacterium


organism_name: Streptococcus lutetiensis


organism_name: Veillonella parvula


organism_name: Clostridium sp.


organism_name: Hungatella hathewayi


organism_name: Varibaculum cambriense


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Eubacterium sp.


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome; genome length too small

organism_name: Butyricicoccus pullicaecorum


organism_name: Lachnospiraceae bacterium


organism_name: Subdoligranulum variabile


organism_name: Akkermansia sp.


organism_name: Eggerthella sp.


organism_name: Ruminococcus sp.


organism_name: Agathobacter rectalis


organism_name: Faecalibacterium prausnitzii


organism_name: Coprobacillus sp.


organism_name: Megasphaera sp.


organism_name: Oscillospiraceae bacterium


organism_name: Bacillota bacterium


organism_name: [Ruminococcus] lactaris


organism_name: Clostridiales bacterium


organism_name: Clostridium sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Roseburia sp.


organism_name: Desulfovibrio sp.


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly; genus undefined


organism_name: Methanobrevibacter smithii


organism_name: Oscillibacter sp.


organism_name: Akkermansia sp.


organism_name: Collinsella sp.


organism_name: Veillonella sp.


organism_name: Atopobium sp.


organism_name: Haemophilus parainfluenzae


organism_name: Ruminococcus sp.


organism_name: Clostridiaceae bacterium


organism_name: Subdoligranulum variabile


organism_name: Klebsiella sp.


organism_name: Streptococcus salivarius


organism_name: Staphylococcus epidermidis


organism_name: Enterococcus faecalis


organism_name: Eubacterium sp.


organism_name: Phascolarctobacterium sp.


organism_name: Streptococcus anginosus


organism_name: Prevotella sp.


organism_name: Bifidobacterium catenulatum


organism_name: Bacillota bacterium


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Clostridium sp.


organism_name: Anaerococcus vaginalis


asm_submitter: Quadram Institute BioScience

organism_name: Bacteroidaceae bacterium


asm_submitter: Masaryk University

infraspecific_name: strain=CCM 8827

organism_name: Flavobacterium psychroterrae


asm_submitter: IZSM-Portici

excluded_from_refseq: annotation fails completeness check

organism_name: Listeria monocytogenes


organism_name: Eubacteriales bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Lachnospiraceae bacterium


organism_name: Streptococcus sp.


organism_name: Actinomyces graevenitzii


organism_name: Lachnospiraceae bacterium oral taxon 082


organism_name: Finegoldia magna


organism_name: Clostridiales bacterium


organism_name: Blautia sp.


organism_name: Enterocloster asparagiformis


organism_name: Bifidobacterium scardovii


organism_name: Roseburia sp.


organism_name: Slackia piriformis


organism_name: Ruminococcus sp.


organism_name: Pseudomonadota bacterium


organism_name: Bacteroides sp.


organism_name: Eggerthella sp.


organism_name: Veillonella sp.


organism_name: Rothia mucilaginosa


organism_name: Eggerthellaceae bacterium


organism_name: Actinomyces sp.


organism_name: Streptococcus salivarius


organism_name: Oscillibacter sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Paraprevotella clara


organism_name: Azospirillum sp.


organism_name: Collinsella sp.


organism_name: Acidaminococcus intestini


organism_name: Alistipes sp.


organism_name: Streptococcus parasanguinis


organism_name: Anaerostipes sp.


organism_name: Lachnospiraceae bacterium


organism_name: Clostridiaceae bacterium


organism_name: Enterocloster clostridioformis


organism_name: Veillonella sp.


organism_name: Haemophilus parainfluenzae


organism_name: Streptococcus sp.


organism_name: Clostridium sp.


organism_name: Bacillota bacterium


organism_name: Ruminococcus sp.


organism_name: Bacteroidales bacterium


organism_name: Ligilactobacillus ruminis


organism_name: Bifidobacterium sp.


organism_name: Megasphaera micronuciformis


organism_name: Streptococcus salivarius


organism_name: Eubacterium sp.


organism_name: Bifidobacterium adolescentis


organism_name: Streptococcus parasanguinis


organism_name: Actinomyces sp.


organism_name: Lactococcus lactis


organism_name: Veillonella dispar


organism_name: Faecalibacterium prausnitzii


organism_name: Bifidobacterium longum


organism_name: Parabacteroides sp.


organism_name: Enterobacter cloacae


organism_name: Bacteroides uniformis


organism_name: Klebsiella aerogenes


organism_name: Veillonella seminalis


organism_name: Collinsella sp.


organism_name: Azospirillum sp.


organism_name: Ruminococcus sp.


organism_name: Streptococcus sp.


organism_name: Coprobacillus sp.


organism_name: Dysgonomonas mossii


organism_name: Dysgonomonas sp.


organism_name: Clostridium sp.


organism_name: Haemophilus parainfluenzae


organism_name: Veillonella sp.


organism_name: Streptococcus salivarius


organism_name: Veillonella parvula


organism_name: Clostridiales bacterium


organism_name: Akkermansia sp.


organism_name: Sanguibacteroides justesenii


organism_name: Intestinibacter bartlettii


organism_name: Prevotella sp.


organism_name: Actinomyces sp.


organism_name: Roseburia sp.


organism_name: Anaerobutyricum hallii


organism_name: Faecalibacterium prausnitzii


organism_name: Blautia sp.


organism_name: Collinsella sp.


organism_name: Enterococcus gallinarum


organism_name: Escherichia coli


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Eubacterium sp.


organism_name: Clostridium sp.


organism_name: butyrate-producing bacterium


organism_name: Clostridiales bacterium


organism_name: Haemophilus parainfluenzae


organism_name: Bacteroidales bacterium


organism_name: Megamonas funiformis


organism_name: Streptococcus salivarius


organism_name: Prevotella sp.


organism_name: Thomasclavelia spiroformis


organism_name: Lachnospiraceae bacterium


organism_name: Megasphaera sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Clostridiaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Fibrobacter sp.


organism_name: Bacilli bacterium


organism_name: Eubacteriales bacterium


organism_name: Prevotellamassilia sp.


organism_name: Oxalobacter sp.


organism_name: Coriobacteriales bacterium


asm_submitter: USDA

organism_name: Pseudomonas syringae


organism_name: Muribaculaceae bacterium


organism_name: Klebsiella pneumoniae


asm_submitter: Shanghai Ocean university

organism_name: Virgibacillus sp. 19R1-5


asm_submitter: Beijing Institute of Technology

organism_name: Microvirga sp. 3-52


organism_name: Enterobacter sp. 120016


asm_submitter: SRCAMB

excluded_from_refseq: from large multi-isolate project

infraspecific_name: strain=SCPM-O-B-8920 (12TKP/19c)


infraspecific_name: strain=SCPM-O-B-8921 (15PKP/19c)


infraspecific_name: strain=SCPM-O-B-8922 (20PKP/19c)


organism_name: Serratia ureilytica


infraspecific_name: strain=SCPM-O-B-8923 (3TKP/19g)


asm_submitter: The University of Texas at Austin

organism_name: Candidatus Jordarchaeia archaeon


isolate: JZ


infraspecific_name: strain=CCM 9061

organism_name: Flavobacterium branchiicola


organism_name: Candidatus Colimorpha enterica


organism_name: Prevotella sp.


organism_name: Treponema sp.


organism_name: Bacteroidales bacterium


organism_name: Eubacteriales bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Parabacteroides sp.


organism_name: Lachnospiraceae bacterium


organism_name: Clostridiaceae bacterium


organism_name: Angelakisella sp.


organism_name: Weeksellaceae bacterium


organism_name: Comamonas sp.


organism_name: Myroides sp.


organism_name: Kiritimatiellia bacterium


organism_name: Fibrobacter sp.


organism_name: Thiopseudomonas sp.


organism_name: Muribaculaceae bacterium


organism_name: Caryophanon sp.


organism_name: Thermoguttaceae bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: Eubacteriales bacterium


organism_name: Saccharimonadaceae bacterium (SeqCode)


organism_name: Bradymonadales bacterium


organism_name: Bacteroidales bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Paludibacteraceae bacterium


organism_name: Ruminiclostridium sp.


organism_name: Bacteroidaceae bacterium


organism_name: Sphaerochaetaceae bacterium


organism_name: Methanobrevibacter sp.


organism_name: Treponema sp.


organism_name: Prevotella sp.


organism_name: Lachnospiraceae bacterium


organism_name: Acetatifactor sp.


organism_name: Pseudomonas syringae


asm_submitter: Public Health England

organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: Health Protection Agency

organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Minnesota


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Typhi


organism_name: Shigella sonnei


organism_name: Shigella flexneri


asm_submitter: FDA


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


asm_submitter: FDA/CFSAN

organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Salmonella enterica subsp. enterica serovar Give


asm_submitter: CDC

organism_name: Salmonella enterica


asm_submitter: Public Health Agency of Canada


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica


organism_name: Salmonella enterica subsp. enterica serovar Agona


asm_submitter: FDA Center for Food Safety and Applied Nutrition


asm_submitter: National Center for Biotechnology Information


organism_name: Escherichia coli


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi B var. L(+) tartrate +


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Enterococcus faecalis


organism_name: Salmonella enterica subsp. enterica serovar Orion


organism_name: Salmonella enterica subsp. enterica serovar Uganda


organism_name: Salmonella enterica subsp. enterica serovar Chailey


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Ohio


organism_name: Salmonella enterica subsp. enterica serovar Eko


organism_name: Salmonella enterica subsp. enterica serovar Senftenberg


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


asm_submitter: China CDC

organism_name: Nocardioides faecalis


organism_name: Cellulomonas wangleii


organism_name: Cellulomonas fengjieae


organism_name: Pseudomonas syringae


organism_name: Pseudomonas viridiflava


asm_submitter: Shanghai Jiao Tong University

organism_name: Salmonella sp. SJTUF15034


organism_name: Salmonella sp. SJTUF14523


asm_submitter: Affiliated Dongyang hospital

excluded_from_refseq: unverified source organism; genome length too large

infraspecific_name: strain=Dongyang

organism_name: Corynebacterium diphtheriae


asm_submitter: Hunan University of Science and Technology

excluded_from_refseq: many frameshifted proteins

organism_name: Nocardiopsis eucommiae


asm_submitter: Brazilian Microbiome Project

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Pseudomonas aeruginosa


organism_name: Salmonella enterica subsp. enterica serovar Minnesota


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


organism_name: Salmonella enterica subsp. enterica serovar Infantis


asm_submitter: Institute of Environmental Microbiology

organism_name: Klebsiella sp. A52


asm_submitter: DOE Joint Genome Institute

organism_name: Thermoflexus hugenholtzii


organism_name: Candidatus Thermoflexus sinensis


asm_submitter: Public Health England

organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: Health Protection Agency

organism_name: Escherichia coli


organism_name: Salmonella enterica


asm_submitter: North Carolina State University

excluded_from_refseq: RefSeq annotation failed

organism_name: Lactobacillus paragasseri


organism_name: Campylobacter jejuni


asm_submitter: Cornell University

organism_name: Anthocerotibacter panamensis C109


asm_submitter: AgResearch Ltd

organism_name: Xylanibacter ruminicola


organism_name: Shigella flexneri


organism_name: Salmonella enterica subsp. enterica serovar Newport


asm_submitter: FDA

organism_name: Enterococcus faecalis


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter coli


asm_submitter: University of Bern

organism_name: Mycoplasma mycoides subsp. capri


infraspecific_name: strain=My-I


infraspecific_name: strain=IVB-X


asm_submitter: National Center for Biotechnology Information


organism_name: Salmonella enterica subsp. enterica serovar Orion


asm_submitter: Bowling Green State University

organism_name: Pseudomonas sp. RC4D1


asm_submitter: Research Institute of Forest Ecology Environment and Protection

organism_name: Enterococcus sp. MMGLQ5-1


organism_name: Pseudomonas sp. RC2C2


asm_submitter: Instituto Butantan


organism_name: Enterococcus sp. MMGLQ5-2


asm_submitter: Instituto tecnologico de Sonora

organism_name: Bacillus cabrialesii subsp. tritici


organism_name: Mucilaginibacter sp. Bleaf8


asm_submitter: Chinese Academy of Sciences

organism_name: Bacteroides propionicigenes


asm_submitter: The Institute of Microbiology of the Chinese Academy of Sciences

infraspecific_name: strain=CCM 7435

organism_name: Ancylobacter oerskovii


asm_submitter: IHU Mediterranee Infection

organism_name: Bhargavaea massiliensis


organism_name: Dietzia massiliensis


infraspecific_name: strain=VKM B-2789

organism_name: Ancylobacter defluvii


infraspecific_name: strain=VKM B-3280

organism_name: Ancylobacter lacus


infraspecific_name: strain=VKM B-2484

organism_name: Ancylobacter dichloromethanicus


asm_submitter: West China Hospital, Sichuan University

organism_name: Klebsiella pneumoniae


infraspecific_name: strain=VKM B-3145

organism_name: Ancylobacter sonchi


asm_submitter: Third Institute of Oceanography, MNR

infraspecific_name: strain=DSM 12116

organism_name: Fusibacter paucivorans


asm_submitter: UMass Amherst

organism_name: Weissella confusa


asm_submitter: National Centre for Cell Science

organism_name: Sesame phyllody phytoplasma


organism_name: Escherichia coli


excluded_from_refseq: contaminated; from large multi-isolate project


asm_submitter: Health Protection Agency


organism_name: Shigella sonnei


organism_name: Campylobacter jejuni


asm_submitter: CDC

organism_name: Salmonella enterica


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


asm_submitter: FDA


asm_submitter: Public Health Agency of Canada

organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Oranienburg


organism_name: Shigella flexneri


asm_submitter: FDA Center for Food Safety and Applied Nutrition


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi B var. L(+) tartrate +


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter coli


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi B


organism_name: Salmonella enterica subsp. enterica serovar Yoruba


organism_name: Salmonella enterica subsp. enterica serovar Senftenberg


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Minnesota


organism_name: Salmonella enterica subsp. enterica serovar Baildon


organism_name: Salmonella enterica subsp. enterica serovar Thompson


organism_name: Salmonella enterica subsp. enterica serovar Gambia


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Hartford


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Salmonella enterica subsp. enterica serovar Oranienburg


asm_submitter: Universidade Federal de Minas Gerais

infraspecific_name: strain=CECT 7719

organism_name: Weissella ceti


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


asm_submitter: Yangzhou University

organism_name: Bacillus subtilis


asm_submitter: CHINESE ACADEMY OF SCIENCES

excluded_from_refseq: genus undefined

organism_name: Mycoplasmatota bacterium


asm_submitter: Agricultural Bio-resources Research Institute

infraspecific_name: strain=DSM 23626

organism_name: Shewanella dokdonensis


asm_submitter: Christian Medical College

organism_name: Klebsiella pneumoniae


asm_submitter: USDA

organism_name: Pseudomonas syringae


asm_submitter: University of Malaya

infraspecific_name: strain=L1 delta-T1RM

organism_name: Enterobacter asburiae


asm_submitter: Henan Agricultural University

organism_name: Escherichia coli


organism_name: Campylobacter jejuni


organism_name: Salmonella enterica


organism_name: Listeria monocytogenes


asm_submitter: National Center for Biotechnology Information


organism_name: Salmonella enterica subsp. enterica serovar Amsterdam


organism_name: Shigella flexneri


asm_submitter: Kangwon National University

organism_name: Lactiplantibacillus plantarum


asm_submitter: Health Protection Agency


asm_submitter: CDC


organism_name: Salmonella enterica subsp. enterica serovar Senftenberg


asm_submitter: FDA


asm_submitter: Public Health Agency of Canada

organism_name: Salmonella enterica subsp. enterica serovar Manchester


organism_name: Salmonella enterica subsp. enterica serovar Madelia


organism_name: Salmonella enterica subsp. enterica serovar Baildon


asm_submitter: FDA/CFSAN


asm_submitter: The University of Texas at Austin

organism_name: Candidatus Bathyarchaeota archaeon


annotation_name: Annotation submitted by University of Technology Sydney

annotation_provider: University of Technology Sydney

asm_submitter: University of Technology Sydney


asm_submitter: south china agriculture university

organism_name: Enterococcus casseliflavus


organism_name: Enterococcus faecalis


organism_name: Enterococcus gallinarum


organism_name: Enterococcus lactis


organism_name: Enterococcus faecium


asm_submitter: National Institute of Technology and Evaluation Biological Resource Center

infraspecific_name: strain=NBRC 107566

organism_name: Rhizomonospora bruguierae


asm_submitter: Univ. of Maryland

organism_name: Vibrio cholerae


excluded_from_refseq: contaminated


asm_submitter: The University of Hong Kong

infraspecific_name: strain=DSM 6462

organism_name: Chelatococcus asaccharovorans


organism_name: Chelatococcus sp. YT9


organism_name: Chelatococcus sp. HY11


infraspecific_name: strain=DSM 101465

organism_name: Chelatococcus composti


asm_submitter: UNIVERSIDADE CEUMA

infraspecific_name: strain=ATCC 23271

organism_name: Limosilactobacillus fermentum


asm_submitter: Guangdong Institute of Microbiology

organism_name: Croceicoccus gelatinilyticus


asm_submitter: University of Balearic Islands

organism_name: Pseudomonas lalucatii


asm_submitter: Zhejiang University of Technology

organism_name: Pseudomonas qingdaonensis


asm_submitter: Universite Paris Saclay / CNRS

organism_name: Bradyrhizobium sp. sGM-13


organism_name: Bradyrhizobium sp. sBnM-33


asm_submitter: East China University of Science and Technology

organism_name: Aminirod propionatiphilus


asm_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

organism_name: Telmatocola sphagniphila


asm_submitter: Institute of Biotechnology

organism_name: Bacillus velezensis


asm_submitter: Academia Sinica

organism_name: Alcanivorax sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Methylophilaceae bacterium


excluded_from_refseq: derived from metagenome

organism_name: Cyanobium sp. M30B3


organism_name: Thiocapsa sp.


organism_name: Simkaniaceae bacterium


asm_submitter: Rajarata University of Sri lanka

organism_name: Leptospira borgpetersenii


asm_submitter: Pusan National University Hospital

organism_name: Staphylococcus aureus


organism_name: Deltaproteobacteria bacterium


organism_name: Lentisphaeria bacterium


organism_name: Fidelibacterota bacterium


organism_name: Candidatus Omnitrophota bacterium


organism_name: Desulfobacterales bacterium


organism_name: Spirochaetales bacterium


organism_name: Bacteroidales bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Desulfotignum sp.


organism_name: Candidatus Woesearchaeota archaeon


organism_name: Dehalococcoidia bacterium


organism_name: Prolixibacteraceae bacterium


organism_name: Actinomycetota bacterium


organism_name: bacterium


organism_name: Sphaerochaeta sp.


organism_name: Candidatus Nanopelagicales bacterium


organism_name: Kiritimatiellia bacterium


organism_name: Marinobacter sp.


organism_name: Acholeplasmataceae bacterium


organism_name: Clostridia bacterium


organism_name: Campylobacterales bacterium


organism_name: Desulfobacteraceae bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Desulfobacterales bacterium


organism_name: Prosthecochloris vibrioformis


organism_name: Deltaproteobacteria bacterium


organism_name: Bacilli bacterium


excluded_from_refseq: contaminated; derived from metagenome; genus undefined

organism_name: Dehalococcoidales bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Sedimentisphaeraceae bacterium


organism_name: Spirochaetota bacterium


organism_name: Candidatus Bipolaricaulota bacterium


organism_name: archaeon


organism_name: Candidatus Omnitrophota bacterium


organism_name: Candidatus Moraniibacteriota bacterium


organism_name: Halanaerobium sp.


organism_name: Halanaerobiales bacterium


organism_name: Fidelibacterota bacterium


organism_name: Methanomassiliicoccales archaeon


organism_name: Thiocapsa sp.


organism_name: Victivallaceae bacterium


organism_name: Acholeplasmataceae bacterium


organism_name: bacterium


organism_name: Cyanobium sp. M55B138


organism_name: Deltaproteobacteria bacterium


organism_name: Bacteroidales bacterium


organism_name: Kiritimatiellia bacterium


organism_name: Wenzhouxiangella sp.


organism_name: Candidatus Oleincola secundus


organism_name: Actinomycetota bacterium


organism_name: Bacillota bacterium


organism_name: Candidatus Omnitrophota bacterium


organism_name: Lentisphaeria bacterium


organism_name: Patescibacteria group bacterium


organism_name: Tangfeifania sp.


organism_name: Candidatus Cloacimonadota bacterium


organism_name: Bacilli bacterium


organism_name: Pseudomonadota bacterium


organism_name: Planctomycetota bacterium


organism_name: Candidatus Nanopelagicales bacterium


organism_name: bacterium


organism_name: Candidatus Bipolaricaulota bacterium


organism_name: Acholeplasmataceae bacterium


organism_name: Armatimonadota bacterium


organism_name: Bacteroidales bacterium


organism_name: Candidatus Oleincola secundus


organism_name: Flavobacteriaceae bacterium


organism_name: Nitriliruptoraceae bacterium


organism_name: Fidelibacterota bacterium


organism_name: Spirochaetales bacterium


organism_name: Clostridia bacterium


organism_name: Deltaproteobacteria bacterium


organism_name: Staphylococcus warneri


organism_name: Roseicyclus sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Priestia megaterium


organism_name: Candidatus Moraniibacteriota bacterium


organism_name: Bacilli bacterium


organism_name: Pseudomonas sp.


organism_name: Candidatus Altimarinota bacterium


organism_name: Kiritimatiellia bacterium


organism_name: Saccharospirillaceae bacterium


organism_name: bacterium


organism_name: Prosthecochloris vibrioformis


organism_name: Bacteroidales bacterium


organism_name: Ilumatobacteraceae bacterium


organism_name: Candidatus Nanopelagicales bacterium


organism_name: Flavobacteriales bacterium


organism_name: Aestuariivita sp.


organism_name: Rhodospirillaceae bacterium


organism_name: Balneolales bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Algoriphagus sp.


organism_name: Halomonas sp.


organism_name: Acidimicrobiales bacterium


organism_name: Aliidiomarina shirensis


organism_name: Burkholderiaceae bacterium


organism_name: Thiocapsa sp.


organism_name: Mycobacterium sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Bacteroidia bacterium


organism_name: Schleiferiaceae bacterium


organism_name: Pirellulales bacterium


organism_name: Litorivicinus sp.


organism_name: Nonlabens sp.


organism_name: Cyanobium sp. M30B57


organism_name: Salibacteraceae bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Flavobacteriales bacterium


organism_name: Balneolaceae bacterium


organism_name: Chitinophagales bacterium


organism_name: Roseicyclus sp.


organism_name: Flavobacterium sp.


organism_name: Vreelandella aquamarina


organism_name: Candidatus Nanopelagicales bacterium


organism_name: bacterium


organism_name: Flavobacteriaceae bacterium


organism_name: Bacteroidia bacterium


excluded_from_refseq: derived from metagenome; many frameshifted proteins

organism_name: Yoonia sp.


organism_name: Marinobacter sp.


organism_name: Hyphomonas sp.


organism_name: Pontimonas sp.


organism_name: Puniceicoccaceae bacterium


organism_name: Terrimicrobiaceae bacterium


organism_name: Halieaceae bacterium


organism_name: Candidatus Atribacteria bacterium


organism_name: Akkermansiaceae bacterium


organism_name: Opitutaceae bacterium


organism_name: Roseivirga sp.


organism_name: Pseudoalteromonas sp.


organism_name: Crocinitomicaceae bacterium


excluded_from_refseq: RefSeq annotation failed; annotation fails MAG completeness check; derived from metagenome

organism_name: Saccharospirillum sp.


organism_name: Pirellulaceae bacterium


organism_name: Chthoniobacterales bacterium


organism_name: Litorivicinus sp.


organism_name: Aquiluna sp.


organism_name: Burkholderiaceae bacterium


organism_name: Schleiferiaceae bacterium


organism_name: Arsukibacterium sp.


organism_name: Candidatus Izemoplasma sp.


organism_name: Candidatus Pelagibacteraceae bacterium


organism_name: Vicingaceae bacterium


organism_name: Leptospira borgpetersenii


asm_submitter: National Institute of Infectious Diseases

organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


asm_submitter: Oita University

organism_name: Helicobacter pylori


annotation_name: Annotation submitted by Ishikawa prefectural university

annotation_provider: Ishikawa prefectural university

asm_submitter: Ishikawa prefectural university

organism_name: Leuconostoc mesenteroides subsp. mesenteroides


annotation_name: Annotation submitted by Pathobiology, Tehran University of Medical Sciences

infraspecific_name: strain=EntfacYE

organism_name: Enterococcus faecium


asm_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)

excluded_from_refseq: fragmented assembly; genome length too large; not used as type

infraspecific_name: strain=NBRC 15590

organism_name: Thiemannella venezuelensis


asm_submitter: National Agriculture and Food Research Organization

organism_name: Paenibacillus dendritiformis


organism_name: Paenibacillus faecis


organism_name: Paenibacillus lactis


organism_name: Paenibacillus lautus


organism_name: Paenibacillus macerans


organism_name: Paenibacillus montaniterrae


organism_name: Paenibacillus sp. J22TS3


organism_name: Paenibacillus sp. J23TS9


organism_name: Paenibacillus sp. J2TS4


organism_name: Paenibacillus sp. J31TS4


organism_name: Paenibacillus sp. J45TS6


organism_name: Paenibacillus sp. J53TS2


organism_name: Paenibacillus vini


organism_name: Paenibacillus woosongensis


organism_name: Virgibacillus pantothenticus


annotation_name: Annotation submitted by Iwahashi lab applied biological science, Gifu university

organism_name: Lactiplantibacillus pentosus


asm_submitter: Toho University

infraspecific_name: strain=TUM 20250

organism_name: Pseudoxanthomonas japonensis


annotation_name: Annotation submitted by Department of Bacteriology, Faculty of Medical Sciences, Kyushu University

excluded_from_refseq: from large multi-isolate project

organism_name: Escherichia coli


annotation_provider: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


asm_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


annotation_name: Annotation submitted by Japan International Research Center for Agricultural Sciences

organism_name: Paenibacillus cisolokensis


annotation_provider: Japan International Research Center for Agricultural Sciences

organism_name: Xylanibacillus composti


annotation_name: Annotation submitted by Applied Microbiology Applied Biological Science, GIFU University

organism_name: Lactiplantibacillus plantarum


asm_submitter: Northeast Agricultural University

infraspecific_name: strain=LMG 30663

organism_name: Lactococcus formosensis subsp. bovis


infraspecific_name: strain=NBRC 109475

organism_name: Lactococcus formosensis


infraspecific_name: strain=NBRC 111537

organism_name: Lactococcus nasutitermitis


annotation_name: Annotation submitted by AMR Research Center, National Institute of Infectious Diseases

excluded_from_refseq: contaminated; not used as type

infraspecific_name: strain=DSM 16313

organism_name: Acinetobacter seohaensis


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

organism_name: Leptospira borgpetersenii


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


asm_submitter: Public Health Agency of Canada

organism_name: Salmonella enterica subsp. enterica serovar Napoli


asm_submitter: FDA

organism_name: Salmonella enterica


asm_submitter: CDC


organism_name: Salmonella enterica subsp. enterica serovar Friedenau


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Kedougou


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Hartford


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Oranienburg


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


asm_submitter: National Center for Biotechnology Information

organism_name: Escherichia coli


asm_submitter: Public Health England

organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


organism_name: Salmonella enterica subsp. enterica serovar Haifa


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Salmonella enterica subsp. enterica serovar Poona


asm_submitter: Health Protection Agency

organism_name: Shigella flexneri


organism_name: Salmonella enterica subsp. enterica serovar Stanleyville


organism_name: Salmonella enterica subsp. enterica serovar Sandiego


organism_name: Salmonella enterica subsp. enterica serovar Virchow


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Wien


organism_name: Salmonella enterica


organism_name: Campylobacter coli


organism_name: Listeria monocytogenes


annotation_name: Annotation submitted by Environmental Microbiology Lab, Department of Chemistry and Life Science, College of Bioresource Sciences, Nihon University

organism_name: Nitrosospira sp. NRS527


annotation_name: Annotation submitted by Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN

organism_name: Longicatena caecimuris


annotation_name: Annotation submitted by University of Yamanashi

annotation_provider: University of Yamanashi

asm_submitter: University of Yamanashi

organism_name: Bacillus velezensis


annotation_name: Annotation submitted by Health Sciences University of Hokkaido

annotation_provider: Health Sciences University of Hokkaido

asm_submitter: Health Sciences University of Hokkaido

organism_name: Veillonella orientalis


annotation_name: Annotation submitted by Istituto Zooprofilattico Sperimentale delle Venezie

infraspecific_name: strain=Caprivi

organism_name: Mycoplasma mycoides


asm_submitter: Center for Food Safety and Applied Nutrition


annotation_name: Annotation submitted by Japan Advanced Institute of Science and Technology

organism_name: Noviluteimonas caseinilytica


organism_name: Escherichia coli


annotation_provider: Japan Advanced Institute of Science and Technology

organism_name: Lysobacter helvus


annotation_provider: NCBI

asm_submitter: FDA/CFSAN


asm_submitter: Wenzhou-Kean University: Kean University - Wenzhou Campus

organism_name: Staphylococcus epidermidis


organism_name: Staphylococcus aureus


organism_name: Staphylococcus pasteuri


organism_name: Staphylococcus capitis


organism_name: Staphylococcus caprae


organism_name: Staphylococcus hominis


organism_name: Staphylococcus auricularis


organism_name: Staphylococcus pettenkoferi


organism_name: Staphylococcus simulans


organism_name: Shigella flexneri


asm_submitter: Instituto de Productos Lacteos de Asturias (IPLA-CSIC)


annotation_name: Annotation submitted by Utsunomiya University

annotation_provider: Utsunomiya University

asm_submitter: Utsunomiya University

organism_name: Pseudomonas sp. Pc102


organism_name: Salmonella enterica


annotation_name: Annotation submitted by Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology

infraspecific_name: strain=JCM 1004

organism_name: Lactobacillus helveticus


annotation_name: Annotation submitted by RIKEN Baton Zone Program, Benno Laboratory

organism_name: Vescimonas coprocola


annotation_provider: RIKEN Baton Zone Program, Benno Laboratory

organism_name: Pusillibacter faecalis


organism_name: Shigella sonnei


annotation_name: Annotation submitted by The National Agriculture and Food Research Organization (NARO)

organism_name: Caballeronia sp. NK8


asm_submitter: Microbion SrL

infraspecific_name: strain=DLBL 09

organism_name: Bifidobacterium longum subsp. longum


infraspecific_name: strain=BS 01

organism_name: Bifidobacterium animalis subsp. lactis


infraspecific_name: strain=BS 05


organism_name: Escherichia coli


infraspecific_name: strain=MB 2409


annotation_name: Annotation submitted by Graduate School of Engineering, Department of Material and Environmental Chemistry, Utsunomiya University

infraspecific_name: strain=MAFF 311153

organism_name: Erwinia rhapontici


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


annotation_name: Annotation submitted by Laboratory of Veterinary Biochemistry School of Veterinary Medicine Department of Veterinary Medicine, Rakuno Gakuen University

organism_name: Staphylococcus aureus


asm_submitter: UNIVERSITY OF READING

organism_name: Klebsiella pneumoniae


infraspecific_name: strain=DLBL 07


infraspecific_name: strain=BL 03


annotation_provider: Laboratory of Veterinary Biochemistry School of Veterinary Medicine Department of Veterinary Medicine, Rakuno Gakuen University

organism_name: Pseudomonas aeruginosa


annotation_name: Annotation submitted by Nagoya Institute of Technology

annotation_provider: Nagoya Institute of Technology

asm_submitter: Nagoya Institute of Technology

organism_name: Dehalococcoides mccartyi


asm_submitter: CDC


annotation_name: Annotation submitted by Department of Microbiology, Juntendo University School of Medicine

organism_name: Acinetobacter variabilis


asm_submitter: Public Health Agency of Canada

organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


annotation_name: Annotation submitted by National Institute of Genetics

annotation_provider: National Institute of Genetics

asm_submitter: National Institute of Genetics

infraspecific_name: strain=NZ

organism_name: Allochromatium tepidum


organism_name: Salmonella enterica


asm_submitter: National Center for Biotechnology Information


organism_name: Shigella flexneri


asm_submitter: Public Health England

organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


asm_submitter: FDA


organism_name: Salmonella enterica subsp. enterica serovar Anecho


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


infraspecific_name: strain=E. faecalis

organism_name: Enterococcus faecalis


asm_submitter: National Kaohsiung University of Science and Technology

organism_name: Flavobacterium sp. CYK-55


asm_submitter: SRCAMB

organism_name: Providencia stuartii


organism_name: Escherichia coli


asm_submitter: Yangzhou University

organism_name: Acidovorax sp. CCYZU-2555


organism_name: Enterobacter roggenkampii


organism_name: Rhizobiales bacterium TNE-4


infraspecific_name: strain=SDR

organism_name: Roseococcus sp. SDR


organism_name: Variovorax sp. PCZ-1


asm_submitter: Mahidol University

organism_name: Clostridioides difficile


asm_submitter: Beijing Forestry University

organism_name: Roseococcus pinisoli


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


organism_name: Salmonella enterica


organism_name: Campylobacter lari


organism_name: Salmonella enterica subsp. enterica serovar Cubana


asm_submitter: FDA Center for Food Safety and Applied Nutrition

organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Johannesburg


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Worthington


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Campylobacter coli


organism_name: Campylobacter jejuni


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Litchfield


asm_submitter: Leibniz Institute DSMZ

infraspecific_name: strain=DSM 108048

organism_name: Wohlfahrtiimonas chitiniclastica


infraspecific_name: strain=DSM 110179


infraspecific_name: strain=DSM 105984


infraspecific_name: strain=DSM 110473


infraspecific_name: strain=DSM 108045


infraspecific_name: strain=DSM 105838


infraspecific_name: strain=DSM 105708


infraspecific_name: strain=DSM 105839


infraspecific_name: strain=DSM 106597


infraspecific_name: strain=DSM 105712


infraspecific_name: strain=DSM 100917


infraspecific_name: strain=DSM 100676


infraspecific_name: strain=DSM 100375


infraspecific_name: strain=DSM 100374


asm_submitter: Institute of Biotechnology, Vietnam Academy of Science and Technology (VAST)

organism_name: Bacillus velezensis


asm_submitter: Northwest A&F University


asm_submitter: Zhejiang A&F Univeristy

organism_name: Paraburkholderia sacchari


organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Carrau


asm_submitter: CDC


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Escherichia coli


organism_name: Shigella sonnei


organism_name: Shigella flexneri 2a


organism_name: Shigella flexneri 1b


organism_name: Shigella flexneri 3b


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


asm_submitter: FDA/CFSAN


organism_name: Enterococcus faecalis


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


asm_submitter: Zhejiang Wanli University

organism_name: Novosphingobium decolorationis


asm_submitter: University of Balearic Islands

excluded_from_refseq: many frameshifted proteins

organism_name: Pseudomonas lalucatii


asm_submitter: Ouachita Baptist University

organism_name: Bacillus halotolerans


infraspecific_name: strain=Hargis

organism_name: Burkholderia pyrrocinia


organism_name: Pseudomonas rhodesiae


infraspecific_name: strain=Small

organism_name: Pseudomonas entomophila


organism_name: Burkholderia sp. LAS2


organism_name: Pseudomonas sp. SORT22


asm_submitter: University of Kerala

excluded_from_refseq: unverified source organism

organism_name: Pseudomonas fluorescens


organism_name: Salmonella enterica


organism_name: Listeria monocytogenes


asm_submitter: University of Nottingham

infraspecific_name: strain=K-12 J53

organism_name: Escherichia coli


organism_name: Shigella flexneri


asm_submitter: Huazhong Agricultural University

organism_name: Streptococcus suis