organism_name: Mediterraneibacter faecis


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: University of Chicago

assembly_level: Contig

assembly_type: haploid

genome_rep: Full

group: bacteria

organism_name: Agathobacter rectalis

paired_asm_comp: identical

release_type: Major

version_status: latest


organism_name: Eubacterium callanderi


organism_name: Phocaeicola vulgatus


organism_name: Streptococcus oralis


organism_name: Fusicatenibacter saccharivorans


organism_name: Streptococcus parasanguinis


organism_name: Blautia faecis


organism_name: Lacrimispora sp. 210928-DFI.3.58


organism_name: Bacteroides thetaiotaomicron


organism_name: Bacteroides caccae


organism_name: Mediterraneibacter torques


organism_name: Enterocloster aldenensis


organism_name: Longicatena caecimuris


organism_name: Desulfovibrio desulfuricans


organism_name: Parabacteroides distasonis


organism_name: Flavonifractor plautii


asm_submitter: USDA FSIS

excluded_from_refseq: from large multi-isolate project

organism_name: Campylobacter coli


organism_name: Campylobacter jejuni


asm_submitter: Centers for Disease Control and Prevention


organism_name: Megasphaera massiliensis


organism_name: Enterocloster bolteae


asm_submitter: CDC

organism_name: Escherichia coli


organism_name: Bariatricus massiliensis


organism_name: Alistipes putredinis


organism_name: Mediterraneibacter faecis


organism_name: Bacteroides uniformis


organism_name: Blautia obeum


organism_name: Dorea longicatena


organism_name: Streptococcus parasanguinis


excluded_from_refseq: genus undefined


organism_name: [Clostridium] scindens


organism_name: [Clostridium] hylemonae


organism_name: Enterococcus avium


excluded_from_refseq: unverified source organism

organism_name: [Clostridium] symbiosum


organism_name: Hoylesella buccalis


organism_name: Salmonella enterica


organism_name: Campylobacter coli


asm_submitter: FDA

organism_name: Campylobacter jejuni


organism_name: bacterium 210917-DFI.7.65


asm_submitter: University of Bergen

assembly_level: Scaffold

excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Candidatus Bathyanammoxibius sp.


asm_submitter: Faculty of Veterinary Medicine, Ghent University

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Escherichia coli


infraspecific_name: strain=mu

organism_name: Escherichia marmotae


asm_submitter: Health Protection Agency


infraspecific_name: strain=B


asm_submitter: University Hospital Muenster

organism_name: Enterococcus faecium


organism_name: Enterococcus lactis


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


organism_name: Agathobacter rectalis


organism_name: Anaerobutyricum hallii


excluded_from_refseq: contaminated; fragmented assembly


organism_name: Dorea longicatena


organism_name: Roseburia faecis


asm_submitter: Center for Food Safety and Applied Nutrition


organism_name: Eggerthella lenta


organism_name: Phocaeicola dorei


organism_name: Shigella sonnei


organism_name: Blautia obeum


organism_name: Butyricimonas synergistica


organism_name: Bacteroides uniformis


organism_name: Parabacteroides distasonis


asm_submitter: Washington State Department of Agriculture GenomeTrakr submission group

organism_name: Listeria monocytogenes


organism_name: Escherichia coli


organism_name: Peptostreptococcus anaerobius


organism_name: bacterium 210820-DFI.6.52


organism_name: Adlercreutzia equolifaciens


organism_name: Salmonella enterica


isolate: Whole Organism


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides intestinalis


organism_name: Bacteroides thetaiotaomicron


organism_name: bacterium 210820-DFI.6.37


organism_name: Alistipes communis


organism_name: bacterium 210820-DFI.6.38


organism_name: Alistipes finegoldii


organism_name: Agathobaculum butyriciproducens


organism_name: Thomasclavelia ramosa


organism_name: Bacteroides uniformis


organism_name: Blautia obeum


organism_name: Bacteroides xylanisolvens


organism_name: Bacteroides fragilis


organism_name: Campylobacter jejuni


organism_name: Acinetobacter baumannii


organism_name: Blautia marasmi


organism_name: Adlercreutzia equolifaciens


organism_name: Thomasclavelia saccharogumia


excluded_from_refseq: contaminated; genus undefined

organism_name: bacterium 210820-DFI.5.26


organism_name: Salmonella enterica


organism_name: Phocaeicola vulgatus


organism_name: Salmonella enterica subsp. enterica serovar Luke


organism_name: Escherichia coli


organism_name: Streptococcus parasanguinis


organism_name: Eubacterium callanderi


organism_name: Salmonella enterica subsp. enterica serovar Teshie


organism_name: Faecalicatena fissicatena


organism_name: Phocaeicola dorei


organism_name: Anaerostipes caccae


organism_name: Anaerostipes hadrus


organism_name: Veillonella atypica


organism_name: Enterocloster bolteae


organism_name: Acinetobacter baumannii


organism_name: Blautia producta


organism_name: Citrobacter sp. 210820-DFI.7.8


organism_name: Citrobacter sp. 210820-DFI.7.7


organism_name: Shigella sonnei


organism_name: Veillonella parvula


organism_name: Sutterella wadsworthensis


organism_name: Eubacterium limosum


organism_name: Enterococcus gallinarum


organism_name: Campylobacter coli


organism_name: Blautia glucerasea


organism_name: Escherichia coli


excluded_from_refseq: contaminated; from large multi-isolate project


organism_name: Blautia faecis


organism_name: Phocaeicola vulgatus


organism_name: Thomasclavelia ramosa


organism_name: Salmonella enterica


organism_name: Ruminococcus sp. 210702-SL.1.03


organism_name: Anaerostipes caccae


organism_name: Bacteroides faecis


organism_name: [Clostridium] symbiosum


organism_name: Anaerostipes hadrus


organism_name: Bacteroides cellulosilyticus


organism_name: Mediterraneibacter sp. 210702-DFI.5.30


organism_name: Campylobacter jejuni


organism_name: Acinetobacter baumannii


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Phocaeicola dorei


organism_name: Bacteroides uniformis


organism_name: Coprococcus eutactus


organism_name: Blautia wexlerae


organism_name: Bacteroides salyersiae


organism_name: Eubacterium callanderi


organism_name: [Clostridium] scindens


organism_name: Mediterraneibacter torques


organism_name: Phocaeicola vulgatus


organism_name: Campylobacter coli


organism_name: Allocoprococcus comes


excluded_from_refseq: contaminated

organism_name: Colidextribacter sp. 210702-DFI.3.9


organism_name: Emergencia timonensis


organism_name: Pseudocoprococcus catus


organism_name: Parabacteroides distasonis


organism_name: Streptococcus parasanguinis


organism_name: Campylobacter jejuni


organism_name: Veillonella atypica


organism_name: Mediterraneibacter sp. 210702-DFI.3.120


organism_name: Salmonella enterica


organism_name: Acinetobacter baumannii


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Escherichia coli


organism_name: Enterococcus avium


organism_name: Eggerthella lenta


organism_name: Desulfovibrio desulfuricans


organism_name: Listeria monocytogenes


organism_name: Gordonibacter urolithinfaciens


organism_name: Bifidobacterium longum


organism_name: Phascolarctobacterium faecium


organism_name: Thomasclavelia ramosa


organism_name: Megasphaera massiliensis


organism_name: Citrobacter freundii


organism_name: Dorea formicigenerans


organism_name: Campylobacter jejuni


organism_name: Faecalimonas umbilicata


organism_name: [Clostridium] scindens


organism_name: Schaalia odontolytica


organism_name: Campylobacter coli


organism_name: Streptococcus gordonii


organism_name: Streptococcus salivarius


organism_name: Longicatena sp. 210702-DFI.1.36


organism_name: Phocaeicola vulgatus


organism_name: Longicatena sp. 210702-DFI.1.255


organism_name: Mediterraneibacter faecis


organism_name: Longicatena sp. 210702-DFI.1.253


organism_name: Salmonella enterica


organism_name: Mediterraneibacter glycyrrhizinilyticus


organism_name: Acidaminococcus intestini


organism_name: Thomasclavelia ramosa


organism_name: Longicatena sp. 210702-DFI.1.249


organism_name: Bacteroides thetaiotaomicron


organism_name: Escherichia coli


organism_name: Dorea formicigenerans


organism_name: Campylobacter jejuni


organism_name: Serratia marcescens


organism_name: Anaerostipes caccae


organism_name: [Clostridium] scindens


organism_name: Longicatena sp. 210702-DFI.1.211


organism_name: Acinetobacter baumannii


organism_name: Longicatena sp. 210702-DFI.1.213


organism_name: Enterocloster bolteae


organism_name: Mediterraneibacter torques


organism_name: Longicatena sp. 210702-DFI.1.199


organism_name: Longicatena sp. 210702-DFI.1.196


organism_name: Longicatena sp. 210702-DFI.1.194


organism_name: Longicatena sp. 210702-DFI.1.177


organism_name: Bacteroides uniformis


organism_name: Thomasclavelia ramosa


organism_name: Bacteroides thetaiotaomicron


organism_name: Phocaeicola vulgatus


organism_name: Bariatricus massiliensis


organism_name: Longicatena sp. 210702-DFI.1.163


organism_name: Longicatena sp. 210702-DFI.1.160


organism_name: Megasphaera massiliensis


organism_name: Dorea formicigenerans


organism_name: Bacteroides cellulosilyticus


organism_name: Anaerostipes caccae


organism_name: [Clostridium] scindens


organism_name: Mediterraneibacter faecis


organism_name: Longicatena sp. 210702-DFI.1.100


organism_name: Parabacteroides merdae


organism_name: Gordonibacter pamelaeae


organism_name: Salmonella enterica


organism_name: Escherichia coli


organism_name: Campylobacter coli


organism_name: Blautia wexlerae


organism_name: Blautia glucerasea


organism_name: Blautia obeum


organism_name: Campylobacter jejuni


organism_name: Listeria monocytogenes


organism_name: Blautia faecis


organism_name: [Clostridium] symbiosum


organism_name: Enterocloster lavalensis


organism_name: Intestinibacillus massiliensis


organism_name: Proteus mirabilis


organism_name: Lachnospira pectinoschiza


organism_name: Dialister invisus


organism_name: Extibacter muris


organism_name: Blautia marasmi


organism_name: Anaerostipes hadrus


organism_name: Lacrimispora saccharolytica


organism_name: Bacillus sp. DFI.2.34


organism_name: Salmonella enterica


organism_name: Escherichia coli


asm_submitter: NRC "Kurchatov Institute"

organism_name: Rhodobacter sp. Har01


asm_submitter: Universidad El Bosque

excluded_from_refseq: unverified source organism; annotation fails completeness check; many frameshifted proteins

organism_name: Providencia rettgeri


asm_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)

infraspecific_name: strain=TBRC 13508

organism_name: Leeia speluncae

refseq_category: reference genome

relation_to_type_material: assembly from type material


asm_submitter: CSIR-Central Salt and Marine Chemicals Research Institute

organism_name: Bacillus paralicheniformis


asm_submitter: Institute for Cellular and Intracellular Symbiosis

organism_name: Bifidobacterium longum


organism_name: Acinetobacter baumannii


asm_submitter: Faculty of Public Health

organism_name: Klebsiella pneumoniae


asm_submitter: Chinese Academy of Tropical Agricultural Sciences

organism_name: Bacillus cereus


asm_submitter: CDC

organism_name: Shigella flexneri


asm_submitter: Nicolaus Copernicus University

organism_name: Streptomyces pinistramenti


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Montevideo


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


asm_submitter: Masaryk University

infraspecific_name: strain=96205 J

organism_name: Flavobacterium psychrophilum


asm_submitter: USDA FSIS

organism_name: Campylobacter coli


infraspecific_name: strain=96206 L


infraspecific_name: strain=1729 z


organism_name: Listeria monocytogenes


infraspecific_name: strain=1730 s


infraspecific_name: strain=2499 s


infraspecific_name: strain=2500 s


infraspecific_name: strain=2502 L


infraspecific_name: strain=2503 L


infraspecific_name: strain=2504 s


organism_name: Salmonella enterica


infraspecific_name: strain=jikry 4


infraspecific_name: strain=jikry 5


infraspecific_name: strain=98244 s


infraspecific_name: strain=98247 s


infraspecific_name: strain=98256 s


infraspecific_name: strain=98752 s


infraspecific_name: strain=98253 s


organism_name: Shigella sonnei


infraspecific_name: strain=99096 s


infraspecific_name: strain=9333 z


infraspecific_name: strain=9335 org


infraspecific_name: strain=9471 s


infraspecific_name: strain=9335 z


infraspecific_name: strain=9334 z


infraspecific_name: strain=9472 sl


infraspecific_name: strain=9472 s


infraspecific_name: strain=9711 s


asm_submitter: Fudan University

organism_name: Pseudomonas aeruginosa


asm_submitter: Yunnan University

organism_name: Janibacter melonis


asm_submitter: china acadmy of science

organism_name: Enterobacter sp. TCD1-1


asm_submitter: Jiangsu University

group: archaea

organism_name: Salinirubrum litoreum


asm_submitter: Pasteur Institute of Iran

organism_name: Enterobacter hormaechei


organism_name: Enterobacter cloacae


organism_name: Halorubellus salinus


asm_submitter: BioPS Co., Ltd.

organism_name: Enterococcus sp. BWT-B8


organism_name: Enterococcus sp. CWB-B31


asm_submitter: Yerevan State University

infraspecific_name: strain=KAb 2-4

organism_name: Acidocella sp. KAb 2-4


asm_submitter: SRCAMB

organism_name: Enterococcus faecalis


asm_submitter: Vet-LIRN-CVM-FDA

isolate: Canis lupus familiaris

organism_name: Escherichia coli


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


asm_submitter: Washington State Department of Agriculture GenomeTrakr submission group


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


organism_name: Campylobacter jejuni


organism_name: Citrobacter freundii


asm_submitter: CDC


organism_name: Salmonella enterica


organism_name: Shigella sonnei


asm_submitter: Michigan Department of Health and Human Services


asm_submitter: Utah Public Health Laboratory Infectious Disease submission group

assembly_level: Complete Genome


organism_name: Serratia marcescens


asm_submitter: Hospital Universitario Central de Asturias

organism_name: Klebsiella pneumoniae


organism_name: Klebsiella variicola


organism_name: Shigella flexneri


isolate: Equus ferus caballus

organism_name: Salmonella enterica subsp. enterica serovar Uganda


asm_submitter: Public Health England

organism_name: Salmonella enterica subsp. enterica serovar Mississippi


organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Salmonella enterica subsp. enterica serovar Thompson


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


asm_submitter: FDA/CFSAN

organism_name: Listeria monocytogenes


asm_submitter: Centers for Disease Control and Prevention


asm_submitter: FDA


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Anatum


asm_submitter: Health Protection Agency

organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Coeln


organism_name: Staphylococcus pseudintermedius


organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Reading


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Berta


organism_name: Salmonella enterica subsp. enterica serovar Hadar


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Salmonella enterica subsp. enterica serovar Ohio


organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Weltevreden


organism_name: Salmonella enterica subsp. enterica serovar Brandenburg


organism_name: Acinetobacter baumannii


organism_name: Salmonella enterica


organism_name: Escherichia coli


organism_name: Vibrio alginolyticus


organism_name: Vibrio parahaemolyticus


asm_submitter: Heidelberg University Hospital

organism_name: Staphylococcus aureus


organism_name: Campylobacter jejuni


isolate: Canus lupis familiaris


organism_name: Salmonella enterica subsp. enterica serovar Senftenberg


asm_submitter: University of Sao Paulo

organism_name: Klebsiella pneumoniae


asm_submitter: University of Chicago

organism_name: Bifidobacterium sp. MSK23_125


organism_name: Faecalibacillus sp. MSK20_93


organism_name: Faecalibacillus sp. TM498


organism_name: Bifidobacterium sp. MSK23_139


organism_name: Faecalibacillus intestinalis


organism_name: Faecalibacillus sp. TM111


organism_name: Streptococcus vestibularis


organism_name: Fusobacterium ulcerans


organism_name: Dorea formicigenerans


organism_name: Salmonella enterica


asm_submitter: Case Western Reserve University

infraspecific_name: strain=VHA

organism_name: Microbacterium oxydans


asm_submitter: Ausgem

organism_name: Escherichia coli


asm_submitter: Zoonosis Science Center


organism_name: Klebsiella variicola subsp. variicola


organism_name: Klebsiella aerogenes


organism_name: Enterococcus faecalis


organism_name: Enterococcus durans


organism_name: Enterococcus faecium


organism_name: Bilophila wadsworthia


organism_name: Blautia sp. DFI.9.9


organism_name: Faecalibacillus faecis


organism_name: Citrobacter europaeus


organism_name: Enterococcus lactis


organism_name: Faecalibacillus intestinalis


organism_name: Veillonella nakazawae


organism_name: Blautia sp. DFI.3.45


organism_name: Holdemanella sp. DFI.5.55


organism_name: Blautia sp. DFI.6.71


organism_name: Salmonella enterica


organism_name: Escherichia coli


organism_name: Fusobacterium ulcerans


organism_name: Streptococcus mitis


organism_name: Blautia sp. DFI.1.216


asm_submitter: NRC "Kurchatov Institute"

organism_name: Rhodoferax sp. U2-2l


asm_submitter: Bowling Green State University

organism_name: Planktothrix agardhii 1813


organism_name: Planktothrix agardhii 1809


organism_name: Planktothrix agardhii 1810


organism_name: Planktothrix agardhii 1808


organism_name: Planktothrix agardhii 1031


organism_name: Planktothrix agardhii 1025


asm_submitter: Zhejiang Academy of Agricultural Sciences


asm_submitter: CSIR-Central Salt and Marine Chemicals Research Institute

infraspecific_name: strain=MTCC 5918

organism_name: Acinetobacter soli


asm_submitter: IBPM RAS

organism_name: Desulfosporosinus shakirovi


organism_name: Campylobacter jejuni


asm_submitter: Beijing University of Chemical Technology

organism_name: Microvirga rosea


asm_submitter: University of Cincinnati

organism_name: Halomonas sp. FeN2


asm_submitter: Shandong Univesity

organism_name: Jeotgalibacillus aurantiacus


asm_submitter: CDC

organism_name: Salmonella enterica


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Escherichia coli


organism_name: Shigella flexneri


organism_name: Shigella sonnei


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter coli


asm_submitter: USDA FSIS


organism_name: Vibrio cholerae


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Manhattan


organism_name: Salmonella enterica subsp. enterica serovar Muenchen


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: Public Health England


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Eko


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica


organism_name: Salmonella enterica subsp. enterica serovar Muenster


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Vibrio parahaemolyticus


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


asm_submitter: Health Protection Agency


organism_name: Salmonella enterica subsp. enterica serovar Uganda


organism_name: Salmonella enterica subsp. enterica serovar Muenchen


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Typhi


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Salmonella enterica subsp. enterica serovar Ohio


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Eko


organism_name: Salmonella enterica


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Muenster


organism_name: Listeria monocytogenes


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Campylobacter coli


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Brandenburg


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Salmonella enterica subsp. enterica serovar Reading


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica


organism_name: Shigella flexneri


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Johannesburg


organism_name: Campylobacter jejuni


organism_name: Escherichia coli


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Ohio


organism_name: Salmonella enterica subsp. enterica serovar Give


organism_name: Campylobacter coli


asm_submitter: FDA/CFSAN

organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Uganda


organism_name: Salmonella enterica subsp. enterica serovar Hartford


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Anatum


asm_submitter: National Center for Biotechnology Information


asm_submitter: FDA Center for Food Safety and Applied Nutrition


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


organism_name: Salmonella enterica subsp. enterica serovar London


organism_name: Campylobacter jejuni


organism_name: Escherichia coli


organism_name: Citrobacter freundii


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Muenster


organism_name: Salmonella enterica subsp. enterica serovar Senftenberg


organism_name: Shigella sonnei


organism_name: Campylobacter coli


organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Give


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Johannesburg


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Shigella flexneri


organism_name: Salmonella enterica subsp. enterica serovar Thompson


organism_name: Salmonella enterica subsp. enterica serovar Ohio


organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


organism_name: Salmonella enterica subsp. enterica serovar Bredeney


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


asm_submitter: Center for Food Safety and Applied Nutrition


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Acinetobacter baumannii


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Hadar


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica


organism_name: Campylobacter coli


organism_name: Vibrio parahaemolyticus


organism_name: Salmonella enterica subsp. enterica serovar Rissen


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Shigella flexneri


organism_name: Shigella boydii


organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Worthington


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Cerro


asm_submitter: Institute of Veterinary Bacteriology, University of Bern

organism_name: Corynebacterium uberis


asm_submitter: The University of Nottingham

organism_name: Bifidobacterium pseudolongum


asm_submitter: Jiangsu University

organism_name: Haladaptatus salinisoli


infraspecific_name: strain=JCM 16327

organism_name: Salarchaeum japonicum


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Newport


asm_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

infraspecific_name: strain=VKM B-3413

organism_name: Jiella soli


annotation_name: Annotation submitted by LNCC

annotation_provider: LNCC

asm_submitter: LNCC

organism_name: Klebsiella pneumoniae


excluded_from_refseq: annotation fails completeness check


asm_submitter: CDC

organism_name: Shigella flexneri


asm_submitter: University of Otago

organism_name: Vogesella sp. XCS3


asm_submitter: CIAD AC

organism_name: Clavibacter michiganensis subsp. michiganensis


asm_submitter: wenzhou medical university

organism_name: Escherichia coli


asm_submitter: Korea University

organism_name: Mesorhizobium sp. PAMC28654


organism_name: Lichenihabitans sp. PAMC28606


asm_submitter: Hunan Institute of Agricultural Biotechnology

organism_name: Streptomyces longhuiensis


asm_submitter: Shanghai Jiao Tong University

organism_name: Halomonas sp. NyZ770


asm_submitter: Institute of Microbiology, Chinese Academy of Sciences

organism_name: Lentilactobacillus laojiaonis


asm_submitter: University of Melbourne

organism_name: Mycobacterium ulcerans


asm_submitter: Tianjin University of Technology

organism_name: Acinetobacter haemolyticus


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Infantis


asm_submitter: Health Protection Agency


organism_name: Salmonella enterica


asm_submitter: Kyung Hee University

organism_name: Enterococcus faecalis


asm_submitter: Center for Food Safety and Applied Nutrition


organism_name: Campylobacter jejuni


asm_submitter: FDA/CFSAN

organism_name: Listeria monocytogenes


asm_submitter: FDA Center for Food Safety and Applied Nutrition


asm_submitter: Huazhong Agricultural University

organism_name: Cupriavidus sp. MP-37


asm_submitter: Jiangsu University

organism_name: Haladaptatus halobius


asm_submitter: CDC


asm_submitter: Public Health Agency of Canada

organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


organism_name: Shigella flexneri


asm_submitter: University of Occidental Brittany

infraspecific_name: strain=HW T2.11

organism_name: Acidisoma silvae


asm_submitter: Public Health England


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi B


organism_name: Escherichia coli


asm_submitter: USDA FSIS

organism_name: Campylobacter coli


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Stanley


organism_name: Salmonella enterica subsp. enterica serovar Litchfield


organism_name: Salmonella enterica subsp. enterica serovar Minnesota


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica


organism_name: Salmonella enterica subsp. enterica serovar Aqua


organism_name: Salmonella enterica subsp. enterica serovar Coeln


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Ibadan


organism_name: Salmonella enterica subsp. enterica serovar Infantis


infraspecific_name: strain=HW T5.17

organism_name: Acidisoma cellulosilyticum


asm_submitter: University of Tuebingen

excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Betaproteobacteria bacterium


organism_name: Escherichia coli


organism_name: Shigella flexneri


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Amager


asm_submitter: Faculty of Sciences of Tunisia, ElManar, Laboratory of LMBA

organism_name: Cedecea davisae


excluded_from_refseq: derived from metagenome

organism_name: Rhizobium sp.


organism_name: Burkholderiales bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Thiobacillus denitrificans


organism_name: Curvibacter sp.


organism_name: Candidatus Ferrigenium altingense


organism_name: Acidovorax sp.


organism_name: Geothrix sp.


organism_name: Paracoccaceae bacterium


organism_name: Methylotenera sp.


organism_name: Thermomonas sp.


asm_submitter: Sun Yat-sen University

organism_name: Riemerella anatipestifer


asm_submitter: Shandong Univesity

organism_name: Boseongicola sp. H5


organism_name: Sphingopyxis sp. P8


organism_name: Shigella flexneri


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: FDA

organism_name: Escherichia coli


organism_name: Halomonas sp. M20


asm_submitter: FIOCRUZ

organism_name: Mycobacterium fragae


infraspecific_name: strain=MR

organism_name: Phaeobacter sp. MR


organism_name: Salmonella enterica


organism_name: Roseobacter weihaiensis


asm_submitter: Yenepoya University

infraspecific_name: strain=prim 29

organism_name: Vreelandella malpeensis


asm_submitter: Oswaldo Cruz Institute

organism_name: Bordetella pertussis


organism_name: Salmonella enterica subsp. enterica serovar Minnesota


organism_name: Salmonella enterica subsp. enterica serovar Infantis


asm_submitter: Health Protection Agency

organism_name: Listeria monocytogenes


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica


organism_name: Shigella flexneri


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi B


organism_name: Salmonella enterica subsp. enterica serovar Mikawasima


organism_name: Salmonella enterica subsp. enterica serovar Kedougou


organism_name: Salmonella enterica subsp. enterica serovar Coeln


asm_submitter: Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences

organism_name: Pseudoalteromonas piscicida


asm_submitter: zhejiang university

organism_name: bacterium


organism_name: Clostridiales bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined


organism_name: Bacteroidota bacterium


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly; genome length too small

organism_name: Selenomonas sputigena


excluded_from_refseq: unverified source organism; derived from metagenome; fragmented assembly; genome length too small

organism_name: Xylanibacter ruminicola


excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small


organism_name: Elusimicrobium minutum


organism_name: Bacteroidales bacterium


organism_name: Prevotella sp.


excluded_from_refseq: unverified source organism; derived from metagenome; fragmented assembly


excluded_from_refseq: unverified source organism; derived from metagenome; fragmented assembly; genome length too large


excluded_from_refseq: unverified source organism; derived from metagenome; fragmented assembly; genus undefined


organism_name: Coriobacteriaceae bacterium


organism_name: Bifidobacteriaceae bacterium


organism_name: Pseudomonadota bacterium


excluded_from_refseq: unverified source organism; derived from metagenome; fragmented assembly; genus undefined; low quality sequence


excluded_from_refseq: derived from metagenome; fragmented assembly


organism_name: Oscillospiraceae bacterium


organism_name: Bacillota bacterium


asm_submitter: Ocean University of China

organism_name: Myxococcota bacterium


organism_name: Saprospiraceae bacterium


organism_name: Bdellovibrionales bacterium


organism_name: Yoonia sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Akkermansiaceae bacterium


organism_name: Hellea sp.


organism_name: Granulosicoccus sp.


organism_name: Paracoccaceae bacterium


organism_name: Pseudooctadecabacter sp.


organism_name: Croceivirga sp.


organism_name: Maribacter sp.


organism_name: Crocinitomicaceae bacterium


organism_name: Flavobacteriaceae bacterium


organism_name: Verrucomicrobiota bacterium


organism_name: bacterium


organism_name: Cytophagales bacterium


organism_name: Nitrosopumilaceae archaeon


organism_name: Bacteroidota bacterium


organism_name: Rhizobiaceae bacterium


organism_name: Acidimicrobiales bacterium


organism_name: Saprospiraceae bacterium


organism_name: Wenyingzhuangia sp.


organism_name: Bdellovibrionales bacterium


organism_name: Pseudoalteromonas marina


organism_name: Algibacter sp.


organism_name: Pseudooctadecabacter sp.


organism_name: Hellea sp.


asm_submitter: Universite Libre de Bruxelles

organism_name: Vagococcus fluvialis


organism_name: Chitinophagales bacterium


organism_name: Oceanospirillaceae bacterium


organism_name: Paracoccaceae bacterium


organism_name: Dokdonia sp.


organism_name: Granulosicoccaceae bacterium


organism_name: Chloroflexota bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Candidatus Endobugula sp.


organism_name: Minisyncoccota bacterium


organism_name: Flavobacteriales bacterium


organism_name: Aquimarina sp.


organism_name: Saprospiraceae bacterium


organism_name: Candidatus Altimarinota bacterium


organism_name: Acidimicrobiales bacterium


organism_name: Flavimaricola sp.


organism_name: Hellea sp.


organism_name: Planktomarina sp.


organism_name: Tenacibaculum sp.


organism_name: Maribacter sp.


organism_name: Chitinophagales bacterium


organism_name: Rhodospirillaceae bacterium


organism_name: Erythrobacter sp.


organism_name: Cytophagales bacterium


organism_name: Neolewinella agarilytica


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Caedibacter sp.


organism_name: Dokdonia sp.


organism_name: Minisyncoccota bacterium


organism_name: bacterium


organism_name: Flavobacteriales bacterium


organism_name: Candidatus Altimarinota bacterium


organism_name: Verrucomicrobiota bacterium


organism_name: Granulosicoccaceae bacterium


organism_name: Saprospiraceae bacterium


organism_name: Hellea sp.


organism_name: Bacteroidota bacterium


organism_name: Myxococcota bacterium


organism_name: Pseudaestuariivita sp.


organism_name: Planktomarina sp.


organism_name: Gammaproteobacteria bacterium


organism_name: Acidimicrobiales bacterium


organism_name: Rickettsiales bacterium


organism_name: Candidatus Dojkabacteria bacterium


organism_name: Granulosicoccus sp.


organism_name: Anaerolineales bacterium


organism_name: Sphingomonadaceae bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Bacteriovoracaceae bacterium


organism_name: Flavobacteriales bacterium


organism_name: Aureispira sp.


organism_name: Saprospiraceae bacterium


organism_name: Bernardetia sp.


organism_name: Chitinophagales bacterium


organism_name: Hellea sp.


organism_name: Bdellovibrionales bacterium


organism_name: Paracoccaceae bacterium


organism_name: Nonlabens sp.


organism_name: Colwellia sp.


organism_name: Verrucomicrobiota bacterium


organism_name: Halocynthiibacter sp.


organism_name: Deltaproteobacteria bacterium


organism_name: Dokdonia sp.


organism_name: Acidimicrobiales bacterium


organism_name: Candidatus Altimarinota bacterium


organism_name: Microscilla sp.


organism_name: Bacteroidota bacterium


organism_name: Flavimaricola sp.


organism_name: Saprospiraceae bacterium


organism_name: Polaribacter sp.


organism_name: Rickettsiales bacterium


organism_name: Chromatiales bacterium


organism_name: Bizionia sp.


organism_name: Bacteriovoracaceae bacterium


organism_name: Tenacibaculum sp.


organism_name: Flavobacteriales bacterium


organism_name: bacterium


organism_name: Chloroflexota bacterium


asm_submitter: University of British Columbia

organism_name: Rhodococcus rhodochrous


asm_submitter: The University of Hong Kong

organism_name: Candidatus Nomurabacteria bacterium


organism_name: Planctomycetota bacterium


organism_name: Pseudomonadales bacterium


organism_name: Candidatus Peribacteria bacterium


organism_name: Candidatus Omnitrophota bacterium


organism_name: Nitrospiraceae bacterium


organism_name: Spirochaetaceae bacterium


organism_name: Deltaproteobacteria bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Myxococcales bacterium


organism_name: Sandaracinaceae bacterium


organism_name: Sandaracinus sp.


organism_name: Polyangiaceae bacterium


organism_name: Kofleriaceae bacterium


organism_name: Deferribacteres bacterium


organism_name: Gemmatimonadales bacterium


organism_name: Candidatus Latescibacterota bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: Fibrobacteria bacterium


organism_name: Caryophanales bacterium


organism_name: Desulfobacteraceae bacterium


excluded_from_refseq: derived from metagenome; genome length too large; genus undefined

organism_name: Candidatus Eiseniibacteriota bacterium


organism_name: Campylobacterota bacterium


organism_name: Candidatus Delongbacteria bacterium


organism_name: Candidatus Obscuribacterales bacterium


organism_name: Thermoflexaceae bacterium


organism_name: Dehalococcoidia bacterium


organism_name: Anaerolineaceae bacterium


organism_name: Anaerolineales bacterium


organism_name: Ardenticatenaceae bacterium


organism_name: Promineifilum sp. (SeqCode)


organism_name: Ardenticatenales bacterium


organism_name: Caldilineae bacterium


organism_name: Caldilineaceae bacterium


organism_name: Calditrichia bacterium


organism_name: Arcobacter sp.


organism_name: Pseudobdellovibrionaceae bacterium


organism_name: Halobacteriovoraceae bacterium


organism_name: Deltaproteobacteria bacterium


organism_name: Ignavibacteria bacterium


organism_name: Ignavibacteriales bacterium


organism_name: Flavobacteriales bacterium


organism_name: Alteromonas sp.


organism_name: Bacteroidia bacterium


organism_name: Flammeovirgaceae bacterium


organism_name: Crocinitomicaceae bacterium


organism_name: Chitinophagales bacterium


organism_name: Lewinellaceae bacterium


organism_name: Bacteroidales bacterium


organism_name: Prevotellaceae bacterium


organism_name: Lentimicrobiaceae bacterium


organism_name: Chthonomonadaceae bacterium


organism_name: Thermoleophilales bacterium


organism_name: Actinomycetota bacterium


organism_name: Nocardioides sp.


organism_name: Nocardioidaceae bacterium


organism_name: Mycolicibacterium sp.


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Nostocoides sp.


organism_name: Microthrixaceae bacterium


organism_name: Acidimicrobiaceae bacterium


organism_name: Holophagales bacterium


organism_name: Acidobacteriota bacterium


organism_name: Bryobacterales bacterium


organism_name: Acidimicrobiia bacterium


organism_name: Calditrichota bacterium


organism_name: Candidatus Woesearchaeota archaeon


organism_name: Rhodobacter sp.


organism_name: Rhodococcus rhodochrous


organism_name: Rhodovulum sp.


organism_name: Albidovulum sp.


organism_name: Paracoccaceae bacterium


organism_name: Brucellaceae bacterium


organism_name: Hoeflea sp.


organism_name: Nitratireductor sp.


organism_name: Hyphomicrobiaceae bacterium


organism_name: Rhodobiaceae bacterium


organism_name: Methylobacteriaceae bacterium


organism_name: Rhodospirillales bacterium


organism_name: Micavibrio sp.


organism_name: Hyphomonas sp.


organism_name: Geminicoccaceae bacterium


organism_name: Caulobacterales bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Rhodospirillaceae bacterium


organism_name: Planctomycetota bacterium


organism_name: Planctomycetaceae bacterium


organism_name: Phycisphaerales bacterium


organism_name: Phycisphaeraceae bacterium


organism_name: Phycisphaera sp.


organism_name: Candidatus Nomurabacteria bacterium


asm_submitter: The First Affiliated Hospital of Wenzhou Medical University

organism_name: Citrobacter freundii


asm_submitter: Chandigarh University

organism_name: Streptomyces flavotricini


asm_submitter: Ningbo First Hospital

organism_name: Aeromonas veronii


organism_name: Aeromonas hydrophila


asm_submitter: OHSU

organism_name: Pseudomonas aeruginosa


asm_submitter: Department of Botany, Kayavattom Campus, University of Kerala, Trivandrum

organism_name: Streptomyces californicus


asm_submitter: CSIR-Institute of Microbial Technology

organism_name: Brevibacillus borstelensis


asm_submitter: Carl von Ossietzky University Oldenburg

organism_name: Waterburya agarophytonicola KI4


asm_submitter: TAILORED-Treatment project

infraspecific_name: strain=CCUG 70037

organism_name: Streptococcus mitis


organism_name: Aeromonas caviae


asm_submitter: Southwest Medical University

organism_name: Proteus sp. NMG38-2


asm_submitter: Shanghai Jiao Tong University

organism_name: Klebsiella pneumoniae


asm_submitter: Northern Arizona University

organism_name: Clostridioides sp. ES-W-0016-02


organism_name: Clostridioides sp. ES-S-0010-02


asm_submitter: The Independent Schools Foundation Academy

organism_name: Stenotrophomonas maltophilia


excluded_from_refseq: unverified source organism


asm_submitter: CDC

excluded_from_refseq: from large multi-isolate project

organism_name: Salmonella enterica


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes