organism_name: Candidatus Onthomorpha sp.


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: Agriculture and Agri-Food Canada

assembly_level: Contig

assembly_type: haploid

excluded_from_refseq: derived from metagenome

genome_rep: Full

group: bacteria

organism_name: Treponema sp.

release_type: Major

version_status: latest


organism_name: Oliverpabstia intestinalis

paired_asm_comp: identical


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Christensenellaceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Corynebacterium glucuronolyticum


organism_name: Helicobacter sp.


organism_name: Bariatricus sp.


organism_name: Bacilli bacterium


organism_name: Candidatus Onthovivens sp.


organism_name: Corynebacterium sp.


organism_name: Sodaliphilus sp.


organism_name: Prevotella sp.


organism_name: Candidatus Limisoma sp.


asm_submitter: National Center for Biotechnology Information

excluded_from_refseq: from large multi-isolate project

infraspecific_name: strain=clinical isolate of L. monocytogenes

organism_name: Listeria monocytogenes


organism_name: Peptoniphilaceae bacterium


organism_name: Lachnospiraceae bacterium


group: archaea


organism_name: Arcanobacterium sp.


organism_name: Eubacteriales bacterium


organism_name: Collinsella sp.


organism_name: Agathobacter sp.


organism_name: Actinobacillus porcinus


organism_name: Porphyromonas sp.


organism_name: Corynebacterium camporealensis


organism_name: Candidatus Enterosoma sp.


organism_name: Anaerovoracaceae bacterium


organism_name: Treponema sp.


organism_name: Candidatus Onthovivens sp.


organism_name: Inconstantimicrobium porci


organism_name: Prevotella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Listeria monocytogenes


organism_name: Campylobacter coli


organism_name: Bacilli bacterium


organism_name: Campylobacter sp.


organism_name: Candidatus Alloenteromonas sp.


organism_name: Candidatus Onthomorpha sp.


organism_name: Roseburia sp.


organism_name: Sodaliphilus sp.


organism_name: Bullifex sp.


organism_name: Candidatus Limisoma sp.


organism_name: Succinivibrio sp.


organism_name: Hallella sp.


organism_name: Lactobacillus amylovorus


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Candidatus Onthovivens sp.


organism_name: Eubacteriales bacterium


organism_name: Phocaeicola sp.


organism_name: Peptostreptococcus porci


organism_name: Oscillospiraceae bacterium


organism_name: Prevotella sp.


organism_name: Collinsella sp.


organism_name: Bacteroidaceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Candidatus Ornithospirochaeta sp.


organism_name: Helicobacter sp.


organism_name: Agathobaculum butyriciproducens


organism_name: Frisingicoccus sp.


organism_name: Lachnoclostridium sp.


organism_name: Kiritimatiellia bacterium


organism_name: Sphaerochaetaceae bacterium


organism_name: Succinivibrio sp.


organism_name: Erysipelotrichaceae bacterium


organism_name: Phocaeicola plebeius


organism_name: Streptococcus hyovaginalis


organism_name: Bacteroidales bacterium


organism_name: Candidatus Onthovivens sp.


organism_name: Butyricicoccus sp.


organism_name: Candidatus Enterosoma sp.


organism_name: Duodenibacillus sp.


excluded_from_refseq: contaminated; derived from metagenome; genome length too small

organism_name: Pseudocoprococcus catus


organism_name: Gemmiger sp.


organism_name: Listeria monocytogenes


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Bacilli bacterium


organism_name: Candidatus Limisoma sp.


organism_name: Paratractidigestivibacter faecalis


organism_name: Parabacteroides sp.


organism_name: Oscillospiraceae bacterium


organism_name: Anaeroplasma sp.


organism_name: Fusobacterium mortiferum


organism_name: Anaerovoracaceae bacterium


organism_name: Alloprevotella sp.


organism_name: Clostridium sp.


organism_name: Prevotella sp.


organism_name: Treponemataceae bacterium


organism_name: Christensenellaceae bacterium


organism_name: Faecousia sp.


organism_name: Sodaliphilus sp.


organism_name: Rothia sp. (in: high G+C Gram-positive bacteria)


organism_name: Bergeyella zoohelcum


organism_name: Lactobacillus johnsonii


organism_name: Micrococcus sp.


organism_name: Corynebacterium sp.


organism_name: Elusimicrobiaceae bacterium


organism_name: Acidaminococcaceae bacterium


organism_name: Paludibacteraceae bacterium


organism_name: Anaerobutyricum sp.


organism_name: Eubacterium sp.


organism_name: Anaerococcus sp.


organism_name: Bulleidia sp.


organism_name: Bacilli bacterium


organism_name: Peptoniphilus sp.


organism_name: Anaerovibrio sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Campylobacter lanienae


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Fimenecus sp.


asm_submitter: China Agricultural University

isolate: HCA4 bin6

organism_name: Prevotella sp.


isolate: HCA5 bin21

organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Onthovivens sp.


organism_name: Finegoldia sp.


organism_name: Faecousia sp.


organism_name: Erysipelotrichaceae bacterium


organism_name: Eubacteriales bacterium


organism_name: Candidatus Enterosoma sp.


organism_name: Bdellovibrionota bacterium


organism_name: Opitutales bacterium


organism_name: Dialister sp.


organism_name: Ezakiella sp.


organism_name: Peptoniphilaceae bacterium


organism_name: Succiniclasticum sp.


organism_name: Bacilli bacterium


organism_name: Mobiluncus sp.


organism_name: Bacteroidales bacterium


organism_name: Ellagibacter isourolithinifaciens


organism_name: Candidatus Alloenteromonas sp.


organism_name: Actinomycetaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Alloprevotella sp.


organism_name: Prevotella sp.


organism_name: Porphyromonas sp.


organism_name: Acetatifactor sp.


organism_name: Listeria monocytogenes


organism_name: Bacteroidaceae bacterium


organism_name: Sodaliphilus sp.


organism_name: Campylobacter sputorum


organism_name: Anaerovoracaceae bacterium


organism_name: Eubacteriales bacterium


organism_name: Elusimicrobiaceae bacterium


organism_name: Anaerococcus sp.


organism_name: Escherichia coli


organism_name: Peptoniphilaceae bacterium


organism_name: Campylobacter sp.


organism_name: Arcanobacterium sp.


organism_name: Campylobacter lanienae


excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small

organism_name: Ruminococcus callidus


organism_name: Dialister sp.


organism_name: Candidatus Limisoma sp.


organism_name: Collinsella sp.


organism_name: Listeria monocytogenes


organism_name: Terrisporobacter sp.


organism_name: Gemmiger qucibialis


organism_name: Faecousia sp.


organism_name: Candidatus Limivicinus sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Sodaliphilus sp.


organism_name: Agathobacter sp.


organism_name: Escherichia coli


organism_name: Segatella copri


organism_name: Bacteroides uniformis


organism_name: Fusobacterium necrophorum


organism_name: Lentihominibacter sp.


organism_name: Eubacteriales bacterium


organism_name: Treponema sp.


organism_name: Muribaculaceae bacterium


organism_name: Lactobacillus johnsonii


organism_name: Listeria monocytogenes


organism_name: Ruminococcus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Prevotella sp.


organism_name: Christensenellaceae bacterium


organism_name: Candidatus Alectryocaccobium sp.


organism_name: Clostridium sp.


organism_name: Butyricimonas virosa


organism_name: Hornefia butyriciproducens


organism_name: Actinobacillus porcinus


organism_name: Hungatella hathewayi


organism_name: Desulfovibrio sp.


organism_name: Schaalia hyovaginalis


organism_name: Veillonella caviae


organism_name: Peptostreptococcus porci


asm_submitter: Institute of Microbiology of the Czech Academy of Sciences

infraspecific_name: strain=ANC 7618

organism_name: Acinetobacter faecalis


infraspecific_name: strain=ANC 7486


infraspecific_name: strain=ANC 7507


infraspecific_name: strain=ANC 7652


infraspecific_name: strain=ANC 7520


asm_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University

organism_name: Enterococcus avium


organism_name: Listeria monocytogenes


isolate: CON1 bin7

organism_name: Cyanobacteriota bacterium


isolate: CB2 bin18

organism_name: Bacteroidales bacterium


isolate: CON2 bin25

organism_name: Bacilli bacterium


isolate: CON4 bin1

organism_name: Oscillospiraceae bacterium


isolate: CON1 bin8


isolate: CON1 bin18

organism_name: Lachnospiraceae bacterium


isolate: CON2 bin26


isolate: CON1 bin16

organism_name: Fibrobacter sp.


isolate: CB4 bin15


isolate: CON1 bin13


isolate: CB5 bin22

organism_name: Synergistales bacterium


isolate: CB4 bin10


isolate: CB4 bin21


isolate: CB4 bin31

organism_name: Pseudomonadota bacterium


isolate: CB2 bin16


isolate: C5 bin16


isolate: CB5 bin11


isolate: CB2 bin14


isolate: CB4 bin29

organism_name: Clostridia bacterium


isolate: CB3 bin23


isolate: CB3 bin14


isolate: CB2 bin24


isolate: CB3 bin21


isolate: CB1 bin31


isolate: C3 bin6


isolate: C5 bin2


isolate: C5 bin20

organism_name: Succinivibrio dextrinosolvens


isolate: CB1 bin27


isolate: C3 bin9


isolate: C1 bin17

organism_name: Prevotella sp.


isolate: CB1 bin6


isolate: CB1 bin5


isolate: C4 bin12


isolate: C1 bin19


isolate: C4 bin10


isolate: C4 bin20


isolate: C3 bin20


isolate: C2 bin14


isolate: C1 bin10


isolate: C3 bin15


isolate: C3 bin5


isolate: C2 bin6


isolate: C1 bin9


isolate: HCA5 bin16


isolate: HCA5 bin33


isolate: HCA5 bin18


isolate: HCA5 bin4

organism_name: Bacteroidaceae bacterium


asm_submitter: CDC

organism_name: Salmonella enterica


isolate: HCA2 bin16


isolate: HCA3 bin23


isolate: HCA3 bin20

organism_name: Succinivibrionaceae bacterium


isolate: HCA5 bin10


isolate: HCA4 bin20

organism_name: Succinivibrio sp.


isolate: HCA5 bin3


isolate: HCA4 bin8


isolate: HCA4 bin19


isolate: HCA2 bin23


isolate: HCA2 bin11


isolate: HCA3 bin22

organism_name: Selenomonadaceae bacterium


isolate: CON4 bin30


isolate: HCA1 bin8


isolate: CON6 bin35


isolate: CON6 bin12

organism_name: Catonella sp.


isolate: HCA1 bin11


isolate: CON6 bin34


isolate: CON6 bin1


isolate: CON6 bin25

organism_name: Saccharofermentans sp.


isolate: CON6 bin17

organism_name: Bacteroidales bacterium


isolate: CON6 bin31

organism_name: Oribacterium sp.


isolate: CON4 bin11

organism_name: Cyanobacteriota bacterium


isolate: CON4 bin10


isolate: CON6 bin19


isolate: CON6 bin15

organism_name: Lachnospiraceae bacterium


isolate: CON6 bin24


isolate: CON5 bin3

organism_name: Succiniclasticum sp.


isolate: CON6 bin18

organism_name: Sphaerochaetaceae bacterium


isolate: CON5 bin14


isolate: CON5 bin19


isolate: CON5 bin21


isolate: CON2 bin1

organism_name: Bacilli bacterium


isolate: CON5 bin18


isolate: CON4 bin27


isolate: CON4 bin28


isolate: CON5 bin10


isolate: CON2 bin22


isolate: CON4 bin9

organism_name: Treponema sp.


isolate: CON2 bin21

organism_name: Fibrobacter sp.


isolate: CON4 bin13


isolate: CON2 bin3


isolate: HCA1 bin20


isolate: CON4 bin14


isolate: HCA3 bin7

organism_name: Prevotella sp.


isolate: HCA1 bin26

organism_name: Erysipelotrichaceae bacterium


isolate: HCA3 bin9


isolate: CON6 bin26

organism_name: Selenomonas sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

isolate: HCA3 bin5

organism_name: Roseburia faecis


isolate: HCA1 bin15


isolate: HCA1 bin32

organism_name: Alloprevotella sp.


isolate: HCA3 bin3

organism_name: Selenomonadaceae bacterium


isolate: HCA1 bin14

organism_name: Schwartzia succinivorans


isolate: CON6 bin30


isolate: HCA1 bin22


isolate: HCA1 bin25


asm_submitter: University of Alabama Birmingham

organism_name: Streptococcus pneumoniae


asm_submitter: University of Florida

organism_name: Pseudomonas fragariae (ex Marin et al. 2024)


infraspecific_name: strain=ANC 7483

organism_name: Acinetobacter faecalis


infraspecific_name: strain=ANC 7420


infraspecific_name: strain=ANC 7421


infraspecific_name: strain=ANC 7204


infraspecific_name: strain=ANC 7225


infraspecific_name: strain=ANC 7521

refseq_category: reference genome


infraspecific_name: strain=ANC 7202


infraspecific_name: strain=ANC 7484


infraspecific_name: strain=ANC 7485


asm_submitter: Children's Hospital of Shanghai

organism_name: Clostridioides difficile


asm_submitter: Policlinico Sant'Orsola-Malpighi

organism_name: Klebsiella pneumoniae


organism_name: Enterococcus avium


asm_submitter: Diversite, Ecologie et Evolution Microbienne, Unite Ecologie Systematique et Evolution

assembly_level: Scaffold

excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Asbonarchaeaceae archaeon (SeqCode)


asm_submitter: Israel Oceanographic and Limnological Research

organism_name: Actinomycetota bacterium


organism_name: Cyanobacteriota bacterium


organism_name: Bacteroidota bacterium


organism_name: Thermodesulfobacteriota bacterium


organism_name: Bacillota bacterium


organism_name: Pseudomonadota bacterium


organism_name: Deferribacterota bacterium


organism_name: Caldifarciminota bacterium


organism_name: Chloroflexota bacterium


organism_name: Thermotogota bacterium


organism_name: Halobacteriota archaeon


organism_name: Planctomycetota bacterium


organism_name: Candidatus Cloacimonadota bacterium


organism_name: Spirochaetota bacterium


organism_name: Thermoplasmatota archaeon


organism_name: Nitrospirota bacterium


organism_name: Chewarchaeum aethiopicum (SeqCode)

relation_to_type_material: assembly from type material


organism_name: Asbonarchaeaceae archaeon (SeqCode)


organism_name: Asbonarchaeum danakilense (SeqCode)


organism_name: Halorutilaceae archaeon


organism_name: Afararchaeum irisae (SeqCode)


organism_name: Cyanobacteriota bacterium


organism_name: Thermodesulfobacteriota bacterium


asm_submitter: INRAE Centre Val de Loire

assembly_level: Complete Genome

organism_name: Mycobacterium avium subsp. paratuberculosis


asm_submitter: Instituto de Higiene, Facultad de Medicina, Universidad de la Republica

organism_name: Pseudomonas aeruginosa


asm_submitter: Andong National University

excluded_from_refseq: unverified source organism

organism_name: Brevibacillus halotolerans


asm_submitter: Laboratory Biochemistry and Biotechnology LR01 ES05.

organism_name: Virgibacillus sp. M23


asm_submitter: FDA/CFSAN

organism_name: Listeria monocytogenes


asm_submitter: Center for Food Safety and Applied Nutrition

organism_name: Salmonella enterica


asm_submitter: National Center for Biotechnology Information

organism_name: Enterococcus faecalis


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


organism_name: Enterococcus faecium


organism_name: Escherichia coli


asm_submitter: FDA


asm_submitter: Bowling Green State University

organism_name: Microcystis panniformis WG22


organism_name: Limnospira fusiformis LS22


asm_submitter: GenomeTrakr Project: Ohio Department of Agriculture ,  Animal Disease Diagnostic Laboratory

organism_name: Enterobacter hormaechei


organism_name: Enterobacter asburiae


asm_submitter: CDC


isolate: Culture

organism_name: Streptococcus equi subsp. zooepidemicus


organism_name: Clostridioides difficile


organism_name: Klebsiella pneumoniae


organism_name: Stenotrophomonas maltophilia


excluded_from_refseq: contaminated; from large multi-isolate project


asm_submitter: Public Health England

organism_name: Yersinia enterocolitica


organism_name: Legionella pneumophila


organism_name: Vibrio parahaemolyticus


asm_submitter: FDA Center for Food Safety and Applied Nutrition


asm_submitter: Health Protection Agency


organism_name: Klebsiella quasipneumoniae


organism_name: Streptococcus equi subsp. equi


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


asm_submitter: Children's Hospital of Shanghai


asm_submitter: Nanjing Agricultural University

organism_name: Pectobacterium brasiliense


asm_submitter: Agriculture and Agri-Food Canada

organism_name: Sarcina ventriculi


organism_name: Methanomethylophilus alvi


organism_name: Escherichia coli


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


infraspecific_name: strain=Microbial


organism_name: Salmonella enterica


infraspecific_name: strain=Escherichia coli strain AGR5359


infraspecific_name: strain=Escherichia coli strain AGR5242


infraspecific_name: strain=Escherichia coli strain AGR5395


infraspecific_name: strain=Escherichia coli strain AGR5585


isolate: CSF


infraspecific_name: strain=Escherichia coli strain AGR5284


infraspecific_name: strain=Escherichia coli strain AGR5355


infraspecific_name: strain=Escherichia coli strain AGR5351


infraspecific_name: strain=Escherichia coli strain AGR5371


infraspecific_name: strain=Escherichia coli strain AGR5409


infraspecific_name: strain=Escherichia coli strain AGR5478


infraspecific_name: strain=Escherichia coli strain AGR5493


infraspecific_name: strain=Escherichia coli strain AGR5498


infraspecific_name: strain=Escherichia coli strain AGR5508


infraspecific_name: strain=Escherichia coli strain AGR5598


infraspecific_name: strain=Escherichia coli strain AGR5687


infraspecific_name: strain=Escherichia coli strain AGR5657


infraspecific_name: strain=Escherichia coli strain AGR5728


infraspecific_name: strain=Escherichia coli strain AGR5767


infraspecific_name: strain=Escherichia coli strain AGR5692


infraspecific_name: strain=Escherichia coli strain AGR5771


infraspecific_name: strain=Escherichia coli strain AGR5769


infraspecific_name: strain=Escherichia coli strain AGR5785


infraspecific_name: strain=Escherichia coli strain AGR5791


infraspecific_name: strain=Escherichia coli strain AGR5805


infraspecific_name: strain=clinical isolate of L. monocytogenes

organism_name: Listeria monocytogenes


asm_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)

organism_name: Klebsiella aerogenes


asm_submitter: National Institute of Agricultural Sciences, Rural Development Administration

organism_name: Buttiauxella sp. HR94


infraspecific_name: strain=Escherichia coli strain AGR5601


infraspecific_name: strain=Escherichia coli strain AGR5715


organism_name: Shigella flexneri


infraspecific_name: strain=Escherichia coli strain AGR5661


infraspecific_name: strain=Escherichia coli strain AGR5912


infraspecific_name: strain=Escherichia coli strain AGR5821


infraspecific_name: strain=Escherichia coli strain AGR5865


infraspecific_name: strain=Klebsiella pneumoniae subsp pneumoniae

isolate: patient 8

organism_name: Klebsiella pneumoniae


infraspecific_name: strain=Escherichia coli strain AGR5776


infraspecific_name: strain=Escherichia coli strain AGR5903


isolate: Key


annotation_name: Annotation submitted by Georg-August-University Goettingen

annotation_provider: Georg-August-University Goettingen

asm_submitter: Georg-August-University Goettingen

organism_name: Pseudomonas hunanensis


organism_name: Pseudomonas extremaustralis


asm_submitter: National Center for Biotechnology Information

infraspecific_name: strain=Escherichia coli strain AGR5910


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


asm_submitter: FDA


organism_name: Streptococcus suis


organism_name: Acinetobacter baumannii


asm_submitter: National Antimicrobial Resistance Monitoring System

organism_name: Vibrio metschnikovii


asm_submitter: Virginia Division of Consolidated Laboratory Services Sequencing Submission Group


asm_submitter: CDC


organism_name: Providencia stuartii


organism_name: Campylobacter coli


asm_submitter: Israel Oceanographic and Limnological Research

organism_name: Planctomycetota bacterium


organism_name: Pseudomonadota bacterium


organism_name: Chloroflexota bacterium


organism_name: Actinomycetota bacterium


organism_name: Salmonella enterica


organism_name: Acidobacteriota bacterium


asm_submitter: Diversite, Ecologie et Evolution Microbienne, Unite Ecologie Systematique et Evolution

organism_name: Halorutilaceae archaeon


organism_name: Campylobacter jejuni


asm_name: Tricycler


organism_name: Shigella sonnei


organism_name: Shigella flexneri


organism_name: Vibrio parahaemolyticus


organism_name: Klebsiella pneumoniae


organism_name: Escherichia coli


infraspecific_name: strain=DSM 3662

organism_name: Eubacterium callanderi


organism_name: Campylobacter upsaliensis


organism_name: Listeria monocytogenes


organism_name: Klebsiella variicola


organism_name: Legionella pneumophila


asm_submitter: FDA/CFSAN


isolate: patient 101


isolate: patient 103


isolate: patient 13


isolate: patient 12


isolate: patient 14


isolate: patient 15


isolate: patient 3


isolate: patient 22


isolate: patient 17


isolate: patient 25


isolate: patient 26


isolate: patient 28


isolate: patient 27


isolate: patient 29


isolate: patient 30


isolate: patient 39


isolate: patient 43


isolate: patient 42


isolate: patient 45


isolate: patient 48


isolate: patient 46


isolate: patient 51


isolate: patient 35


isolate: patient 49


isolate: patient 44


isolate: patient 31


isolate: patient 50


isolate: patient 52


isolate: patient 56


isolate: patient 57


isolate: patient 60


isolate: patient 59


isolate: patient 7


isolate: patient 68


isolate: patient 66


isolate: patient 70


isolate: patient 69


isolate: patient 73


isolate: patient 72


isolate: patient 76


isolate: patient 55


isolate: patient 85


isolate: patient 65


isolate: patient 86


isolate: patient 81


isolate: patient 90


isolate: patient 10


isolate: patient 95


isolate: patient 94


isolate: patient 99


isolate: patient 100


infraspecific_name: strain=Escherichia coli strain AGR5279


infraspecific_name: strain=Escherichia coli strain AGR5347


infraspecific_name: strain=Escherichia coli strain AGR5348


infraspecific_name: strain=Escherichia coli strain AGR5247


infraspecific_name: strain=Escherichia coli strain AGR5368


infraspecific_name: strain=Escherichia coli strain AGR5377


infraspecific_name: strain=Escherichia coli strain AGR5382


infraspecific_name: strain=Escherichia coli strain AGR5376


infraspecific_name: strain=Escherichia coli strain AGR5411


infraspecific_name: strain=Escherichia coli strain AGR5424


infraspecific_name: strain=Escherichia coli strain AGR5480


infraspecific_name: strain=Escherichia coli strain AGR5255


infraspecific_name: strain=Escherichia coli strain AGR5575


infraspecific_name: strain=Escherichia coli strain AGR5583


infraspecific_name: strain=Escherichia coli strain AGR5584


infraspecific_name: strain=Escherichia coli strain AGR5499


infraspecific_name: strain=Escherichia coli strain AGR5574


infraspecific_name: strain=Escherichia coli strain AGR5257


infraspecific_name: strain=Escherichia coli strain AGR5595


infraspecific_name: strain=Escherichia coli strain AGR5650


infraspecific_name: strain=Escherichia coli strain AGR5654


infraspecific_name: strain=Escherichia coli strain AGR5261


infraspecific_name: strain=Escherichia coli strain AGR5670


infraspecific_name: strain=Escherichia coli strain AGR5695


infraspecific_name: strain=Escherichia coli strain AGR5683


infraspecific_name: strain=Escherichia coli strain AGR5698


infraspecific_name: strain=Escherichia coli strain AGR5765


infraspecific_name: strain=Escherichia coli strain AGR5797


infraspecific_name: strain=Escherichia coli strain AGR5266


infraspecific_name: strain=Escherichia coli strain AGR5268


infraspecific_name: strain=Escherichia coli strain AGR5809


infraspecific_name: strain=Escherichia coli strain AGR5812


infraspecific_name: strain=Escherichia coli strain AGR5850


infraspecific_name: strain=Escherichia coli strain AGR5855


infraspecific_name: strain=Escherichia coli strain AGR5860


infraspecific_name: strain=Escherichia coli strain AGR5884


infraspecific_name: strain=Escherichia coli strain AGR5890


infraspecific_name: strain=Escherichia coli strain AGR5895


infraspecific_name: strain=clinical isolate of L. monocytogenes


infraspecific_name: strain=Escherichia coli strain AGR5898


infraspecific_name: strain=Escherichia coli strain AGR5363


infraspecific_name: strain=Escherichia coli strain AGR5490


infraspecific_name: strain=Escherichia coli strain AGR5501


infraspecific_name: strain=Escherichia coli strain AGR5603


infraspecific_name: strain=Klebsiella pneumoniae subsp pneumoniae

isolate: patient 78


isolate: patient 83


isolate: patient 89


isolate: patient 88


infraspecific_name: strain=Escherichia coli strain AGR5491


isolate: patient 74


isolate: patient 97


isolate: patient 92


infraspecific_name: strain=Escherichia coli strain AGR5246


isolate: patient 98


infraspecific_name: strain=Escherichia coli strain AGR5251


infraspecific_name: strain=Escherichia coli strain AGR5907


infraspecific_name: strain=Escherichia coli strain AGR5706


infraspecific_name: strain=Escherichia coli strain AGR5343


isolate: patient 38


infraspecific_name: strain=Escherichia coli strain AGR5790


isolate: blood


infraspecific_name: strain=Escherichia coli strain AGR5481


isolate: patient 23


isolate: patient 41


isolate: patient 93


isolate: patient 87


isolate: patient 96


asm_submitter: Public Health England

organism_name: Yersinia enterocolitica


isolate: patient 32


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Muenchen


asm_submitter: Center for Food Safety and Applied Nutrition


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


infraspecific_name: strain=Escherichia coli strain AGR5824


organism_name: Campylobacter coli


organism_name: Shigella flexneri


organism_name: Campylobacter jejuni


organism_name: Klebsiella pneumoniae


organism_name: Escherichia coli


isolate: patient 40


organism_name: Streptococcus suis


organism_name: Shigella sonnei


organism_name: Streptococcus suis 92-4172


organism_name: Streptococcus suis 92-1400


organism_name: Streptococcus suis 92-1191


organism_name: Streptococcus suis 89-5259


organism_name: Streptococcus suis 89-3576-3


organism_name: Streptococcus suis 89-2479


organism_name: Streptococcus suis 13730


organism_name: Streptococcus suis NT77


organism_name: Streptococcus suis 14A


organism_name: Streptococcus suis 93A


infraspecific_name: strain=NCTC 10446


organism_name: Streptococcus suis 10581


organism_name: Streptococcus suis 8830


organism_name: Streptococcus suis 14636


organism_name: Streptococcus suis 22083


organism_name: Streptococcus suis 4417


organism_name: Streptococcus suis 8074


organism_name: Streptococcus suis 12814


organism_name: Streptococcus suis 2524


organism_name: Salmonella enterica


organism_name: Streptococcus suis 2726


organism_name: Streptococcus suis 11538


organism_name: Streptococcus suis 6407


organism_name: Streptococcus suis 2651


infraspecific_name: strain=NCTC 10237

organism_name: Streptococcus suis


organism_name: Streptococcus suis 4961


asm_submitter: USDA FSIS

organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica


organism_name: Salmonella enterica subsp. enterica serovar Liverpool


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Berta


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Campylobacter coli


organism_name: Cronobacter dublinensis


asm_submitter: Centers for Disease Control and Prevention


asm_submitter: Huazhong Agricultural University

organism_name: Pseudarthrobacter oxydans


asm_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod

assembly_level: Chromosome

organism_name: Pseudomonas aeruginosa


asm_submitter: Peking Union Medical College Hospital

organism_name: Morganella morganii


asm_submitter: College of Agricultural

organism_name: Cedecea neteri


organism_name: Bacillus subtilis


asm_submitter: Alex Ekwueme Federal University

organism_name: Alcaligenes nematophilus


asm_submitter: Los Angeles County Public Health Lab microbial pathogen submission group

organism_name: Klebsiella pneumoniae


asm_submitter: APC Microbiome Ireland

organism_name: Escherichia coli


asm_submitter: BIOLACT

organism_name: Lactiplantibacillus plantarum


organism_name: Acinetobacter baumannii


organism_name: Enterobacter hormaechei


asm_submitter: Ningbo University

organism_name: Pseudoalteromonas piscicida


asm_submitter: Shandong First Medical University

organism_name: Salmonella enterica


asm_submitter: Inner MongoliaAgricultural University

organism_name: Limosilactobacillus reuteri


asm_submitter: Cultivarium

infraspecific_name: strain=ATCC 33173

organism_name: Halomonas elongata DSM 2581


asm_submitter: Orissa University of Agriculture & Technology

organism_name: Bacillus anthracis


asm_submitter: University of Oxford

organism_name: Stenotrophomonas acidaminiphila


organism_name: Pseudomonas asiatica


asm_submitter: Ulsan National Institute of Science and Technology

organism_name: Peredibacter starrii


asm_submitter: State Key Laboratory for Diagnosis and Treatment of Infectious Diseases


asm_submitter: College of Life Sciences

organism_name: Bacillus sp. RA(2023)


asm_submitter: China Agricultural University


asm_submitter: University of Sao Paulo

organism_name: Halalkalibacterium halodurans


asm_submitter: Guangdong Institute of Microbiology

organism_name: Hyalangium rubrum


asm_submitter: Centre of Biotechnology of Sfax

organism_name: Bacillus thuringiensis


asm_submitter: Centre de Biotechnologie de Sfax

organism_name: Bacillus subtilis


asm_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod

excluded_from_refseq: annotation fails completeness check


asm_submitter: Institute of Hydrobiology, Chinese Academy of Sciences.

organism_name: Denitrificimonas halotolerans


asm_submitter: Wayne State University

organism_name: Staphylococcus aureus


asm_submitter: USDA FSIS

organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


asm_submitter: FDA/CFSAN

organism_name: Listeria monocytogenes


asm_submitter: CDC

organism_name: Escherichia coli


asm_submitter: Public Health England

organism_name: Yersinia enterocolitica


organism_name: Salmonella enterica


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


asm_submitter: National Center for Biotechnology Information

organism_name: Klebsiella quasipneumoniae


organism_name: Listeria innocua


organism_name: Enterococcus faecium


organism_name: Klebsiella pneumoniae


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

infraspecific_name: strain=Microbial


organism_name: Acinetobacter baumannii


asm_submitter: Vet-LIRN-CVM-FDA


asm_submitter: Centers for Disease Control and Prevention


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Citrobacter freundii


organism_name: Enterobacter hormaechei


organism_name: Shigella flexneri


organism_name: Shigella sonnei


asm_submitter: University of California, Los Angeles

organism_name: Mucilaginibacter sabulilitoris


organism_name: Escherichia coli


organism_name: Klebsiella aerogenes


organism_name: Proteus mirabilis


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Mucilaginibacter sp. cycad4


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Orion


organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Campylobacter coli


organism_name: Salmonella enterica subsp. enterica serovar Muenster


organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


asm_submitter: Center for Food Safety and Applied Nutrition


organism_name: Cronobacter malonaticus


organism_name: Shigella flexneri


asm_submitter: Univeristy of Alberta

organism_name: Escherichia coli MP1


organism_name: Escherichia coli


organism_name: Streptococcus suis


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: Georg-August-University Goettingen

organism_name: Clostridioides difficile


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica serovar Brandenburg


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Thompson


organism_name: Salmonella enterica subsp. enterica serovar Alachua


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


asm_submitter: University of Reading

organism_name: Chitinophaga sp. LS1


isolate: clinical

organism_name: Enterobacter hormaechei subsp. hoffmannii


infraspecific_name: strain=AA


isolate: Culture


excluded_from_refseq: unverified source organism; from large multi-isolate project


asm_submitter: Federal University Oye-ekiti

infraspecific_name: strain=OYA S29

organism_name: Enterobacter hormaechei


asm_submitter: University of Oklahoma

organism_name: Bacteroides vicugnae


organism_name: Streptococcus suis


organism_name: Staphylococcus aureus


isolate: Hospital


isolate: abattoir


organism_name: Listeria monocytogenes


organism_name: Escherichia coli


organism_name: Shigella flexneri


organism_name: Shigella sonnei


organism_name: Klebsiella pneumoniae


organism_name: Klebsiella oxytoca


organism_name: Yersinia enterocolitica


organism_name: Vibrio cholerae


organism_name: Citrobacter freundii


organism_name: Vibrio vulnificus


organism_name: Vibrio fluvialis


organism_name: Vibrio alginolyticus


organism_name: Vibrio parahaemolyticus


asm_submitter: Huazhong Agricultural University

organism_name: Acinetobacter oleivorans


asm_submitter: Nanjing Agricultural University


asm_submitter: NNIIEM name acad.I.N. Blokhina

infraspecific_name: strain=NNAb 2485

organism_name: Acinetobacter baumannii


asm_submitter: Hannam University

organism_name: Aureibaculum koreense


asm_submitter: INIFAP

infraspecific_name: strain=Al Qadisiyah

organism_name: Brucella melitensis


asm_submitter: Centre of Biotechnology of Sfax

organism_name: Bacillus thuringiensis


asm_submitter: Centre of biotechnology of Sfax, University of Sfax

organism_name: Bacillus sp. V26


asm_submitter: Postgraduate Institute of Medical Education and Research


asm_submitter: Centro de Ciencias Genomicas


asm_submitter: Volgograd Plague Control Research Institute

organism_name: Ralstonia wenshanensis


asm_submitter: Institute of Cellular and Intracellular Symbiosis Russian Academy of Sciences

infraspecific_name: strain=ICIS 82

organism_name: Corynebacterium amycolatum


asm_submitter: Universidad de Zaragoza, Facultad de Veterinaria

organism_name: Streptococcus suis


asm_submitter: Xiamen University

organism_name: Streptomyces griseoincarnatus


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Pseudomonas aeruginosa


organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


asm_submitter: CDC


asm_submitter: FDA


organism_name: Salmonella enterica


asm_submitter: Los Alamos National Laboratory

infraspecific_name: strain=ATCC 4356

organism_name: Lactobacillus acidophilus


asm_submitter: New Jersey Department of Agriculture


asm_submitter: National Center for Biotechnology Information

organism_name: Legionella pneumophila


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


organism_name: Enterococcus faecium


organism_name: Acinetobacter baumannii


organism_name: Acinetobacter nosocomialis


organism_name: Citrobacter koseri


organism_name: Citrobacter farmeri


organism_name: Citrobacter amalonaticus


asm_submitter: Myongji University

organism_name: Streptomyces atratus


organism_name: Providencia stuartii


organism_name: Providencia rettgeri


organism_name: Citrobacter youngae


organism_name: Clostridioides difficile


organism_name: Enterobacter hormaechei


organism_name: Enterobacter roggenkampii


organism_name: Klebsiella aerogenes


organism_name: Klebsiella oxytoca


organism_name: Serratia marcescens


organism_name: Enterococcus faecalis


organism_name: Enterococcus faecium


organism_name: Acinetobacter baumannii


asm_submitter: Public Health England

organism_name: Yersinia enterocolitica


organism_name: Legionella pneumophila


organism_name: Acinetobacter nosocomialis


organism_name: Burkholderia multivorans


organism_name: Burkholderia cenocepacia


organism_name: Burkholderia contaminans


organism_name: Citrobacter koseri


organism_name: Burkholderia cepacia


organism_name: Citrobacter amalonaticus


organism_name: Citrobacter freundii


organism_name: Citrobacter farmeri


organism_name: Citrobacter braakii


organism_name: Klebsiella aerogenes


organism_name: Enterobacter hormaechei


organism_name: Enterobacter chengduensis


organism_name: Enterobacter ludwigii


organism_name: Enterobacter roggenkampii


organism_name: Providencia stuartii


organism_name: Acinetobacter baumannii


organism_name: Providencia rettgeri


organism_name: Legionella pneumophila


organism_name: Enterococcus faecium


organism_name: Enterococcus faecalis


organism_name: Acinetobacter nosocomialis