organism_name: Methylophilaceae bacterium


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: University of Waterloo

assembly_level: Scaffold

assembly_type: haploid

excluded_from_refseq: derived from metagenome

genome_rep: Full

group: bacteria

organism_name: Sphaerochaeta sp.

paired_asm_comp: identical

release_type: Major

version_status: latest


organism_name: Phenylobacterium sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Cloacimonadales bacterium (SeqCode)


organism_name: Anaerolineales bacterium


organism_name: Candidatus Delongbacteria bacterium


organism_name: FCB group bacterium


organism_name: Thiothrix unzii


organism_name: Candidatus Altimarinota bacterium


organism_name: Bdellovibrionales bacterium


organism_name: Dehalococcoidales bacterium


organism_name: Rhodocyclaceae bacterium


organism_name: Bacteroidales bacterium


organism_name: Lentisphaeria bacterium


organism_name: Candidatus Izemoplasmatales bacterium


organism_name: Anaerolineae bacterium


organism_name: Polyangia bacterium


organism_name: Spongiibacteraceae bacterium


organism_name: Arenimonas caeni


organism_name: Hydrogenophaga sp.


organism_name: Lentimicrobium sp.


organism_name: Syntrophales bacterium


organism_name: Candidatus Krumholzibacteriia bacterium


organism_name: Ignavibacteriaceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Methyloversatilis sp.


organism_name: Thauera propionica


organism_name: Myxococcota bacterium


organism_name: Porticoccaceae bacterium


organism_name: Desulforhabdus sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Giesbergeria sp.


organism_name: Acholeplasmataceae bacterium


organism_name: Bacteroidales bacterium


organism_name: Candidatus Dojkabacteria bacterium


organism_name: Pseudobdellovibrionaceae bacterium


assembly_level: Contig

organism_name: Coriobacteriia bacterium


organism_name: Candidatus Vecturithrix sp.


organism_name: Steroidobacteraceae bacterium


organism_name: Lentimicrobium sp.


organism_name: Thauera sp.


organism_name: Flavobacteriaceae bacterium


organism_name: Ignavibacteriaceae bacterium


organism_name: Bacilli bacterium


organism_name: Aliarcobacter sp.


organism_name: Zoogloea oleivorans


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Halothiobacillaceae bacterium


organism_name: Clostridia bacterium


organism_name: Candidatus Humimicrobiaceae bacterium


organism_name: Kiritimatiellia bacterium


organism_name: Thermoguttaceae bacterium


organism_name: Cloacimonadaceae bacterium (SeqCode)


organism_name: Synergistaceae bacterium


organism_name: Candidatus Syntrophosphaera sp.


group: archaea

organism_name: Methanosarcina vacuolata


organism_name: Corynebacterium sp.


organism_name: Sulfurimonas sp.


organism_name: Prevotella sp.


organism_name: Acholeplasmatales bacterium


organism_name: Halothiobacillus sp.


organism_name: Cloacimonas sp. (SeqCode)


excluded_from_refseq: contaminated; derived from metagenome; genus undefined

organism_name: Bacilli bacterium


organism_name: Sulfurimonadaceae bacterium


organism_name: Thiomicrospira sp.


organism_name: Anaerolineaceae bacterium


organism_name: Bacteroidales bacterium


organism_name: Atribacterota bacterium


organism_name: Klebsiella pneumoniae


organism_name: Pseudomonas sp.


organism_name: Lentisphaeria bacterium


organism_name: Desulforegulaceae bacterium


organism_name: Desulfobotulus sp.


organism_name: Candidatus Izemoplasmatales bacterium


organism_name: Tenuifilaceae bacterium


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Desulfovibrio desulfuricans


organism_name: Cloacimonadaceae bacterium (SeqCode)


organism_name: Desulfuromonadaceae bacterium


organism_name: Desulfuromonas sp.


organism_name: Proteiniphilum sp.


organism_name: Aliarcobacter butzleri


organism_name: Syntrophus sp. (in: bacteria)


organism_name: Aliarcobacter skirrowii


organism_name: Sulfurovaceae bacterium


asm_submitter: University of Galway

organism_name: Paracerasibacillus soli

relation_to_type_material: assembly from type material


organism_name: Cloacimonas acidaminivorans (SeqCode)


excluded_from_refseq: many frameshifted proteins

organism_name: Tigheibacillus halophilus


organism_name: Bacteroidales bacterium


organism_name: Desulfovibrio sp.


organism_name: Desulfomicrobium sp.


organism_name: Sulfurimonas sp.


organism_name: Desulfomicrobium apsheronum


organism_name: Methanosarcina mazei


organism_name: Campylobacterales bacterium


organism_name: Rhodospirillaceae bacterium


organism_name: Methanimicrococcus sp.


organism_name: Pseudomonas sp.


organism_name: Bacilli bacterium


organism_name: Synergistaceae bacterium


organism_name: Trichloromonas sp.


organism_name: Acholeplasma sp.


organism_name: Candidatus Saccharicenans sp.


organism_name: Gudongella oleilytica


organism_name: Advenella sp.


organism_name: Cloacimonadaceae bacterium (SeqCode)


organism_name: Sulfurospirillum cavolei


organism_name: Syntrophotalea acetylenica


organism_name: Sphaerochaeta sp.


organism_name: Desulfuromonadaceae bacterium


organism_name: Desulfobacterium sp.


organism_name: Tenuifilaceae bacterium


organism_name: Gudongella sp.


organism_name: Bacteroidales bacterium


organism_name: Salinivirgaceae bacterium


organism_name: Castellaniella sp.


organism_name: Trichlorobacter sp.


organism_name: Bacilli bacterium


organism_name: Arcobacteraceae bacterium


organism_name: Candidatus Carbonibacillus sp.


organism_name: Thiomonas sp.


organism_name: Acholeplasmatales bacterium


organism_name: Coriobacteriia bacterium


organism_name: Desulfovibrionaceae bacterium


organism_name: Desulforegulaceae bacterium


organism_name: Sphaerochaeta sp.


organism_name: Candidatus Izemoplasmatales bacterium


organism_name: Candidatus Moraniibacteriota bacterium


organism_name: Cloacimonadaceae bacterium (SeqCode)


organism_name: Acholeplasmataceae bacterium


organism_name: Acholeplasma sp.


organism_name: Acidobacteriota bacterium


organism_name: Lentimicrobium sp.


organism_name: Desulfobacterales bacterium


organism_name: Bacteroidales bacterium


organism_name: Sedimentisphaerales bacterium


organism_name: Desulfobulbaceae bacterium


organism_name: Desulfobacterium sp.


organism_name: Sphaerochaetaceae bacterium


organism_name: Atribacterota bacterium


organism_name: Defluviitoga tunisiensis


organism_name: Arcobacteraceae bacterium


organism_name: Candidatus Syntrophosphaera sp.


organism_name: Candidatus Izemoplasmatales bacterium


organism_name: Desulfobulbus oligotrophicus


organism_name: Methanothrix soehngenii


organism_name: Pseudomonas sp.


organism_name: Bacilli bacterium


organism_name: Desulfuromonas thiophila


organism_name: Sulfurovum sp.


organism_name: Trichlorobacter sp.


organism_name: Methanolobus sp.


organism_name: Candidatus Bipolaricaulis sp.


asm_submitter: Institut Pasteur, Universite Paris Cite

assembly_level: Complete Genome

organism_name: Vibrio cholerae


infraspecific_name: strain=CMUL 009


asm_submitter: Technical university of Denmark

organism_name: Pseudomonas sp. P9_35


organism_name: Pseudomonas sp. P9_32


organism_name: Pseudomonas sp. P9_31


organism_name: Pseudomonas sp. P9_2


asm_submitter: West China Hospital, Sichuan University

organism_name: Enterobacter rongchengensis

refseq_category: reference genome


organism_name: Enterobacter chinensis


organism_name: Pseudomonas sp. P8_241


asm_submitter: National Center for Biotechnology Information

excluded_from_refseq: from large multi-isolate project

organism_name: Legionella pneumophila


asm_submitter: CDC

organism_name: Escherichia coli


organism_name: Shigella sonnei


organism_name: Shigella flexneri


organism_name: Salmonella enterica


organism_name: Pseudomonas sp. P8_229


asm_submitter: Health Protection Agency

organism_name: Listeria monocytogenes


organism_name: Pseudomonas sp. P8_139


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


organism_name: Pseudomonas sp. P5_109


asm_submitter: University of Technology Sydney

organism_name: Pasteurella multocida


organism_name: Pseudomonas marginalis


asm_submitter: University of Bern

organism_name: Mammaliicoccus sciuri


organism_name: Staphylococcus aureus


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


organism_name: Staphylococcus pseudintermedius


asm_submitter: Public Health England

organism_name: Yersinia enterocolitica


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: FDA/CFSAN


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Escherichia coli


asm_submitter: US Food and Drug Administration


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Uganda


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar London


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Brandenburg


organism_name: Salmonella enterica subsp. enterica serovar Hadar


asm_submitter: USDA FSIS

organism_name: Campylobacter coli


organism_name: Campylobacter jejuni


organism_name: Pseudomonas germanica


organism_name: Listeria monocytogenes


organism_name: Shigella flexneri


organism_name: Staphylococcus pseudintermedius


organism_name: Vibrio cholerae


organism_name: Vibrio fluvialis


organism_name: Yersinia enterocolitica


organism_name: Escherichia coli


organism_name: Legionella pneumophila


organism_name: Enterococcus faecium


organism_name: Staphylococcus aureus


organism_name: Shigella sonnei


organism_name: Salmonella enterica


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


organism_name: Vibrio parahaemolyticus


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Brandenburg


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Worthington


organism_name: Salmonella enterica subsp. enterica serovar Agbeni


organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Staphylococcus pseudintermedius


organism_name: Salmonella enterica subsp. enterica serovar Altona


organism_name: Staphylococcus haemolyticus


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Mammaliicoccus sciuri


organism_name: Salmonella enterica subsp. enterica serovar Muenster


organism_name: Staphylococcus aureus


asm_submitter: Michigan Department of Health and Human Services

organism_name: Listeria monocytogenes


asm_submitter: FDA Center for Food Safety and Applied Nutrition


organism_name: Cronobacter sakazakii


organism_name: Salmonella enterica


organism_name: Escherichia coli


organism_name: Clostridioides difficile


organism_name: Staphylococcus nepalensis


organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


organism_name: Pseudomonas aeruginosa


isolate: Culture

organism_name: Streptococcus equi subsp. zooepidemicus


organism_name: Vibrio parahaemolyticus


organism_name: Bacillus anthracis


excluded_from_refseq: unverified source organism; from large multi-isolate project

isolate: Gram positive rod shaped bacteria

organism_name: Bacillus pseudomycoides


infraspecific_name: strain=Case 1

isolate: Case 1_lung


organism_name: Streptococcus equi subsp. equi


isolate: guinea pig isolate


isolate: AusPenny


isolate: UKAppleby


organism_name: Shigella flexneri


organism_name: Mammaliicoccus sciuri


organism_name: Mammaliicoccus vitulinus


organism_name: Mammaliicoccus sp. Dog046


organism_name: Staphylococcus aureus


isolate: NLArnica


isolate: IrePusD


isolate: BelLedZep


organism_name: Staphylococcus pseudintermedius


isolate: BelVranck


isolate: BelVanLoo


isolate: BelSorek


isolate: BelKemels


isolate: AusZadiym


isolate: AusZola


isolate: AusTeddy


isolate: AusVirgil


isolate: AusStrykns


isolate: AusWeown


isolate: AusStrykab


isolate: AusSparkyH


isolate: AusStorm


isolate: AusSparkyC


isolate: AusSkyright


isolate: AusPenn


isolate: AusMissys


isolate: AusMissyf


isolate: AusLouab


isolate: AusLouns


isolate: AusJoy


isolate: AusGlaston


isolate: AusCruise


isolate: AusAvenal


organism_name: Mammaliicoccus lentus


organism_name: Staphylococcus cohnii


organism_name: Staphylococcus saprophyticus


asm_submitter: Murdoch University

organism_name: Pseudomonas sp. MUP55


asm_submitter: NDVSU

assembly_level: Chromosome

organism_name: Escherichia coli


asm_submitter: Beijing Institute of Microbiology and Epidemiology

organism_name: Klebsiella ornithinolytica


asm_submitter: Aarhus University

organism_name: Cutibacterium avidum


asm_submitter: Kyonggi university

organism_name: Roseateles agri


asm_submitter: Universita degli Studi di bari

organism_name: Klebsiella pneumoniae


asm_submitter: University of Bologna

organism_name: Kitasatospora purpeofusca


asm_submitter: Universitat Autonoma de Barcelona

organism_name: Acinetobacter radioresistens


organism_name: Providencia rettgeri


organism_name: Pseudomonas aeruginosa


organism_name: Acinetobacter baumannii


asm_submitter: Chinese Academy of Tropical Agricultural Sciences

organism_name: Tenacibaculum sp. IB213877


asm_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod

organism_name: Serratia nevei


asm_submitter: Institute of Molecular Genetics And Genetic Engineering

organism_name: Microbacterium sp. BG28


asm_submitter: Centro de Ciencias Genomicas

organism_name: Acinetobacter pittii


asm_submitter: Rutgers University-Camden

organism_name: Pseudomonas sp. SED1


asm_submitter: Institute of Bioresources and Sustainable Development

organism_name: Lacticaseibacillus paracasei


asm_submitter: Universidad Nacional Mayor de San Marcos


asm_submitter: East China university of Science and Technology

organism_name: Pseudomonas sp. BO3-4


asm_submitter: Korea Research Institute of Bioscience and Biotechnology

excluded_from_refseq: genus undefined

organism_name: Flammeovirgaceae bacterium SG7u.111


asm_submitter: Agriculture and Agri-Food Canada

organism_name: Tardiphaga sp. 42S5


asm_submitter: Ottawa Research and Development Center

organism_name: Pseudomonas chlororaphis subsp. phenazini


asm_submitter: yinfei fang

organism_name: Klebsiella aerogenes


asm_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


asm_submitter: Centre of Biotechnology of Sfax

organism_name: Bacillus thuringiensis


asm_submitter: The Federal Research Centre "Fundamentals of Biotechnology" of the Russian Academy of Sciences

organism_name: Lactobacillus helveticus


asm_submitter: Nanjing Agricultural University

organism_name: Dongia rigui


organism_name: Streptococcus thermophilus


organism_name: Dongia soli


asm_submitter: INRAE

organism_name: Siccibacter turicensis


organism_name: Pseudomonas viridiflava


organism_name: Pseudomonas fluorescens


organism_name: Chryseobacterium sp. CFBP8996


excluded_from_refseq: unverified source organism

organism_name: Enterobacter sp. CFBP8995


organism_name: Stenotrophomonas sp. CFBP8994


organism_name: Pantoea agglomerans


organism_name: Sphingomonas sp. CFBP8993


organism_name: Kosakonia sp. CFBP8986


organism_name: Flavobacterium sp. CFBP9031


organism_name: Leclercia sp. CFBP8987


organism_name: Stenotrophomonas rhizophila


organism_name: Sphingomonas sp. CFBP9021


organism_name: Microbacterium sp. CFBP9023


organism_name: Bacillus thuringiensis


organism_name: Curtobacterium sp. CFBP9011


organism_name: Massilia sp. CFBP9012


organism_name: Priestia megaterium


organism_name: Sphingomonas sp. CFBP9019


organism_name: Massilia sp. CFBP9026


organism_name: Frigoribacterium sp. CFBP9030


organism_name: Lactobacillus helveticus


organism_name: Microbacterium sp. CFBP9034


organism_name: Pedobacter sp. CFBP9032


organism_name: Rathayibacter festucae


organism_name: Frigoribacterium sp. CFBP9029


organism_name: Pseudomonas viridiflava


organism_name: Pseudomonas coleopterorum


asm_submitter: King Abdullah University Science and Technology

infraspecific_name: strain=NGH PA23-28

organism_name: Pseudomonas aeruginosa


infraspecific_name: strain=NGH PA23-24


infraspecific_name: strain=NGH Pa1195


infraspecific_name: strain=NGH Pa851


infraspecific_name: strain=NGH Pa39


infraspecific_name: strain=NGH PA23-10


infraspecific_name: strain=NGH Pa48


infraspecific_name: strain=NGH Pa853


infraspecific_name: strain=NGH Pa49


excluded_from_refseq: contaminated

infraspecific_name: strain=NGH Pa47


infraspecific_name: strain=NGH Pa444


infraspecific_name: strain=NGH Pa37


infraspecific_name: strain=NGH Pa25


infraspecific_name: strain=NGH Pa605


infraspecific_name: strain=NGH Pa51


infraspecific_name: strain=NGH Pa50


infraspecific_name: strain=NGH Pa43


infraspecific_name: strain=NGH Pa46


infraspecific_name: strain=NGH Pa45


infraspecific_name: strain=NGH Pa42


infraspecific_name: strain=NGH Pa26


infraspecific_name: strain=NGH Pa34


infraspecific_name: strain=NGH Pa35


infraspecific_name: strain=NGH Pa31


infraspecific_name: strain=NGH Pa41


infraspecific_name: strain=NGH Pa24


infraspecific_name: strain=NGH PA23-35


infraspecific_name: strain=NGH Pa27


infraspecific_name: strain=NGH Pa23


infraspecific_name: strain=NGH Pa608


infraspecific_name: strain=NGH PA23-30


infraspecific_name: strain=NGH PA23-33


infraspecific_name: strain=NGH PA23-40


organism_name: Lelliottia sp. CFBP8978


organism_name: Stenotrophomonas sp. CFBP8980


infraspecific_name: strain=NGH Pa13


infraspecific_name: strain=NGH Pa18


infraspecific_name: strain=NGH Pa06


infraspecific_name: strain=NGH Pa15


infraspecific_name: strain=NGH Pa04


infraspecific_name: strain=NGH Pa19


infraspecific_name: strain=NGH Pa11


infraspecific_name: strain=NGH Pa12


infraspecific_name: strain=NGH Pa08


infraspecific_name: strain=NGH Pa03


organism_name: Pseudomonas paraeruginosa


infraspecific_name: strain=NGH Pa22


asm_submitter: Public Health England

organism_name: Yersinia enterocolitica


asm_submitter: Hainan Normal University

organism_name: Robbsia andropogonis


asm_submitter: Sichuan Agricultural University

organism_name: Streptococcus suis


asm_submitter: Nanjing Tech University

organism_name: Acinetobacter haemolyticus


asm_submitter: CDC

organism_name: Salmonella enterica


asm_submitter: National Institute of Agricultural Sciences, Rural Development Administration

organism_name: Chryseobacterium sp. JJR-5R


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Hadar


organism_name: Salmonella enterica subsp. enterica serovar Panama


organism_name: Salmonella enterica subsp. enterica serovar Anatum


asm_submitter: USDA FSIS

organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Staphylococcus aureus


asm_submitter: National Institute of Agricultural Sciences

organism_name: Pseudarthrobacter sp. IC2-21


organism_name: Shigella flexneri


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Acinetobacter baumannii


asm_submitter: Dalian Polytechnic University

organism_name: Limosilactobacillus fermentum


organism_name: Salmonella enterica


infraspecific_name: strain=Microbial

organism_name: Klebsiella pneumoniae


organism_name: Escherichia coli


organism_name: Shigella sonnei


asm_submitter: World Institute of Kimchi

organism_name: Pediococcus inopinatus


asm_submitter: National Center for Biotechnology Information

organism_name: Streptococcus equi subsp. equi


infraspecific_name: strain=Streptococcus equi


organism_name: Streptococcus equi subsp. zooepidemicus


asm_submitter: Beijing YuGen Pharmaceutical Co., Ltd

organism_name: Bifidobacterium longum


infraspecific_name: strain=B26 0863


infraspecific_name: strain=B26 Tansey


infraspecific_name: strain=JKS 115


asm_submitter: Chongqing University

organism_name: Bacillus subtilis


asm_submitter: hunankejidaxue

organism_name: Streptomyces sp. CL7


asm_submitter: Probiotics Microbiome Convergence Center

organism_name: Bacillus sonorensis


asm_submitter: Shandong Agricultural University

organism_name: Paenibacillus hunanensis


asm_submitter: Chinese Academy of Fishery Sciences

organism_name: Aeromonas veronii


organism_name: Staphylococcus aureus


isolate: Culture


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


asm_submitter: Dalian University of Technology

organism_name: Pseudomonas sp. AN-1


asm_submitter: Shihezi University

organism_name: Streptomyces sp. KN37


asm_submitter: National Institute of Agricultural Sciences, Rural Development Administration

infraspecific_name: strain=KACC 22761

organism_name: Flavobacterium oryzagri


organism_name: Pseudomonas sp. HR96


asm_submitter: Yangzhou University

organism_name: Escherichia coli


asm_submitter: CDC


asm_submitter: Northeast Agricultural University

organism_name: Bacillus velezensis


asm_submitter: USDA FSIS


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Klebsiella pneumoniae


organism_name: Campylobacter coli


organism_name: Streptococcus equi subsp. equi


organism_name: Salmonella enterica


organism_name: Streptococcus equi subsp. ruminatorum


organism_name: Streptococcus equi subsp. zooepidemicus


infraspecific_name: strain=CCUG 47520

organism_name: Streptococcus equi subsp. ruminatorum CECT 5772


infraspecific_name: strain=CCUG 54867


infraspecific_name: strain=CCUG 27366


infraspecific_name: strain=CCUG 23010A


asm_submitter: Tianjin University of Science and Technology

infraspecific_name: strain=CGMCC 2955

organism_name: Komagataeibacter rhaeticus


asm_submitter: National Center for Biotechnology Information


asm_submitter: Centro de Ciencias Genomicas

organism_name: Acinetobacter pittii


asm_submitter: CSIR-Institute of Microbial Technology

organism_name: Luteibacter sahnii


asm_submitter: King Abdullah University Science and Technology

infraspecific_name: strain=NGH Pa607

organism_name: Pseudomonas aeruginosa


infraspecific_name: strain=NGH Pa07


infraspecific_name: strain=NGH Pa10


organism_name: Pseudomonas paraeruginosa


organism_name: Acinetobacter baumannii


asm_submitter: University of Waterloo

organism_name: Methanofastidiosum sp.


organism_name: Shigella flexneri


infraspecific_name: strain=AbaK


organism_name: Streptococcus suis


asm_submitter: FDA


organism_name: Campylobacter jejuni


organism_name: Campylobacter lari


organism_name: Campylobacter coli


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Salmonella enterica


asm_submitter: Centers for Disease Control and Prevention


organism_name: Escherichia coli


organism_name: Campylobacter upsaliensis


organism_name: Shigella sonnei


asm_submitter: Hackensack-Meridian Health Center for Discovery and Innovation

organism_name: Klebsiella pneumoniae


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar London


organism_name: Salmonella enterica subsp. enterica serovar Lubbock


organism_name: Salmonella enterica subsp. enterica serovar Orion


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Johannesburg


organism_name: Enterobacter hormaechei


organism_name: Campylobacter jejuni


organism_name: Streptococcus suis


organism_name: Salmonella enterica subsp. enterica serovar Newport


asm_submitter: Nigeria

organism_name: Achromobacter xylosoxidans


organism_name: Escherichia coli


asm_submitter: FDA Center for Food Safety and Applied Nutrition


asm_submitter: Shandong University (Qingdao Campus)

organism_name: Bacillus cereus


asm_submitter: Oswaldo Cruz Institute

organism_name: Staphylococcus haemolyticus


asm_submitter: CDC

organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Lacticaseibacillus paracasei


organism_name: Klebsiella pneumoniae


organism_name: Salmonella enterica subsp. enterica serovar Hadar


organism_name: Salmonella enterica subsp. enterica serovar Uganda


organism_name: Streptococcus suis


asm_submitter: Heilongjiang Bayi Agricultural University

organism_name: Clostridium perfringens


asm_submitter: Henan Agricultural University

organism_name: Acinetobacter baumannii


asm_submitter: Peking University People's Hospital


organism_name: Salmonella enterica subsp. enterica serovar Altona


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


excluded_from_refseq: annotation fails completeness check; from large multi-isolate project; many frameshifted proteins


asm_submitter: Yildiz Technical University

organism_name: Weissella confusa


asm_submitter: Loyola University Chicago

organism_name: Enterococcus faecalis


organism_name: Salmonella enterica


organism_name: Weissella cibaria


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Campylobacter jejuni


asm_submitter: National Institute of Cholera and Enteric Diseases

organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Salmonella enterica subsp. enterica serovar Weltevreden


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


asm_submitter: National Center for Biotechnology Information

organism_name: Streptococcus suis


asm_submitter: Agriculture and Agri-Food Canada

organism_name: Faecousia sp.


organism_name: Klebsiella pneumoniae


excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small

organism_name: Ruminococcus callidus


asm_submitter: Shandong Agricultural University

organism_name: Paenibacillus polymyxa


organism_name: Lactiplantibacillus plantarum


asm_submitter: Winogradskyella aqurima KCTC 23502

infraspecific_name: strain=KCTC 23502

organism_name: Winogradskyella aquimaris


asm_submitter: INRAE

organism_name: Pseudomonas syringae


organism_name: Enterococcus faecalis


organism_name: Salmonella enterica subsp. enterica serovar Bareilly


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Fusobacterium necrophorum


organism_name: Enterococcus casseliflavus


organism_name: Agathobacter sp.


organism_name: Clostridium perfringens


organism_name: Bacilli bacterium


organism_name: Candidatus Enterosoma sp.


organism_name: Eubacteriales bacterium


organism_name: Oliverpabstia sp.


organism_name: Sodaliphilus sp.


organism_name: Lachnospiraceae bacterium


organism_name: Clostridium sp.


organism_name: Helicobacter sp.


organism_name: Dialister sp.


organism_name: Campylobacter sp.


organism_name: Oscillospiraceae bacterium


organism_name: Anaerovibrio sp.


organism_name: Alloprevotella sp.


organism_name: Mediterranea sp. (in: CFB group bacteria)


organism_name: Candidatus Egerieousia sp.


organism_name: Coriobacteriales bacterium


organism_name: Treponema succinifaciens


organism_name: Candidatus Limiplasma sp.


organism_name: Escherichia coli


organism_name: Prevotella sp.


organism_name: Eisenbergiella porci


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Bariatricus massiliensis


organism_name: Pyramidobacter porci


organism_name: Phascolarctobacterium sp.


excluded_from_refseq: derived from metagenome; genome length too large

organism_name: Ligilactobacillus salivarius


asm_submitter: Ningbo University

organism_name: Chitinophaga sancti


organism_name: Eubacteriales bacterium


excluded_from_refseq: derived from metagenome

organism_name: Desulfovibrio sp.


organism_name: Candidatus Alloenteromonas sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Limosilactobacillus reuteri


organism_name: Mediterraneibacter gnavus


organism_name: Lentihominibacter sp.


organism_name: Schaalia hyovaginalis


organism_name: Phocaeicola vulgatus


organism_name: Sodaliphilus sp.


organism_name: Dialister sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Oscillospiraceae bacterium


organism_name: Anaerovoracaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Selenomonadaceae bacterium


organism_name: Bacilli bacterium


organism_name: Gemmiger sp.


organism_name: Prevotella sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Christensenellaceae bacterium


organism_name: Candidatus Faecivivens sp.


organism_name: Faecousia sp.


organism_name: Alloprevotella sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Anaerostipes faecalis


organism_name: Erysipelotrichaceae bacterium


organism_name: Clostridium sp.


organism_name: Coriobacteriales bacterium


organism_name: Candidatus Onthovivens sp.


organism_name: Oscillospiraceae bacterium


organism_name: Muribaculaceae bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Intestinibacter sp.


organism_name: Eubacteriales bacterium


organism_name: Methanosphaera sp.


organism_name: Prevotella sp.


organism_name: Bacilli bacterium


organism_name: Bullifex porci


organism_name: Blautia obeum


organism_name: Acidaminococcus sp.


organism_name: Candidatus Treponema excrementipullorum


organism_name: Streptococcus infantarius


organism_name: Parabacteroides distasonis


organism_name: Anaerobiospirillum succiniciproducens


organism_name: Faecalibacterium sp.


organism_name: Campylobacter sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Fusobacterium mortiferum


organism_name: Alloprevotella sp.


organism_name: [Pasteurella] aerogenes


organism_name: Collinsella sp.


organism_name: Peptostreptococcus porci


organism_name: Atopobium sp.


organism_name: Bulleidia sp.


organism_name: Limosilactobacillus sp.


organism_name: Faecalimonas umbilicata


organism_name: Eubacteriales bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Pseudoruminococcus sp.


organism_name: Lactobacillus amylovorus


organism_name: Oscillospiraceae bacterium


organism_name: Treponema sp.


organism_name: Faecousia sp.


organism_name: Bacilli bacterium


organism_name: Dorea sp.


organism_name: Campylobacter lanienae


organism_name: Helicobacter sp.


organism_name: Sodaliphilus sp.


organism_name: Candidatus Aphodomonas sp.


organism_name: Prevotella sp.


organism_name: Bullifex sp.


organism_name: Dialister sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Sodaliphilus pleomorphus


organism_name: Hominisplanchenecus sp.


organism_name: Acidaminococcus fermentans


organism_name: Bacteroidaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Eubacteriales bacterium


organism_name: Bilifractor sp.


organism_name: Treponema sp.


asm_submitter: Soochow University

organism_name: Escherichia coli


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Christensenellaceae bacterium


organism_name: Oliverpabstia sp.


organism_name: Succiniclasticum sp.


organism_name: Alistipes senegalensis


organism_name: Mesosutterella sp.


organism_name: Sodaliphilus sp.


organism_name: Lactobacillus johnsonii


organism_name: Candidatus Faecimonas sp.


organism_name: Succinivibrio sp.


organism_name: Agathobacter sp.


organism_name: Candidatus Limivivens sp.


organism_name: Bacilli bacterium


organism_name: Bariatricus sp.


organism_name: Romboutsia timonensis


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Aphodousia sp.


organism_name: Eubacteriales bacterium


organism_name: Candidatus Enterosoma sp.


organism_name: Christensenellaceae bacterium


organism_name: Caecibacter massiliensis


organism_name: Prevotella sp.


organism_name: Candidatus Caccosoma sp.


organism_name: Malacoplasma sp.


organism_name: Alloprevotella sp.


organism_name: Candidatus Faecisoma sp.


organism_name: Candidatus Alloenteromonas sp.


organism_name: Lentihominibacter sp.


organism_name: Anaerococcus sp.


organism_name: Muribaculaceae bacterium


organism_name: Eubacterium sp.


organism_name: Anaerovoracaceae bacterium


organism_name: Treponema sp.


organism_name: Clostridiaceae bacterium


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Fusicatenibacter sp.


organism_name: Floccifex sp.


organism_name: Elusimicrobiaceae bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: Paludibacteraceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Varibaculum sp.


organism_name: Eubacteriales bacterium


organism_name: Faecalimonas sp.


organism_name: Hornefia butyriciproducens


organism_name: Mannheimia varigena


organism_name: Christensenella hongkongensis


organism_name: Oscillospiraceae bacterium


organism_name: Allobaileyella intestinalis


organism_name: Alloprevotella sp.


organism_name: Anaerococcus porci


organism_name: Peptoniphilus sp.


organism_name: Sodaliphilus sp.


organism_name: Lawsonella sp.


organism_name: Hornefia sp.


organism_name: Vescimonas coprocola


organism_name: Campylobacter hyointestinalis


organism_name: Streptococcus dysgalactiae


organism_name: Enterococcus cecorum


organism_name: Butyricicoccus pullicaecorum


organism_name: Synergistes jonesii


organism_name: Romboutsia timonensis


organism_name: Eubacteriales Family XIII. Incertae Sedis bacterium


organism_name: Fusobacterium sp.


organism_name: Megasphaera massiliensis


organism_name: Oscillospiraceae bacterium


organism_name: Ligilactobacillus animalis


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Roseburia inulinivorans


organism_name: Enterococcus hirae


organism_name: Blautia sp.


organism_name: Streptococcus hyovaginalis


organism_name: Oliverpabstia sp.


organism_name: Clostridia bacterium


organism_name: Eubacteriales bacterium


organism_name: Evtepia sp.


organism_name: Candidatus Faecivicinus sp.


organism_name: Parvimonas sp.


organism_name: Odoribacter sp.


organism_name: Candidatus Enterosoma sp.


organism_name: Absicoccus sp.


organism_name: Rothia sp. (in: high G+C Gram-positive bacteria)


organism_name: Collinsella bouchesdurhonensis


organism_name: [Clostridium] innocuum


organism_name: Streptococcus pluranimalium


organism_name: Sutterella sp.


organism_name: Ndongobacter sp.


organism_name: Fusobacterium sp.


organism_name: Oscillospiraceae bacterium


organism_name: Blautia sp.


organism_name: Mediterraneibacter faecis


organism_name: Parabacteroides sp.


organism_name: Clostridioides difficile


organism_name: Eubacteriales bacterium


organism_name: Sodaliphilus sp.


organism_name: Erysipelotrichaceae bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Prevotella sp.


organism_name: Porphyromonas sp.


organism_name: Lachnospiraceae bacterium


organism_name: Peptoniphilaceae bacterium


organism_name: Anaerococcus sp.


organism_name: Methanobrevibacter sp.


organism_name: Succinivibrio sp.


organism_name: Helicobacter sp.


organism_name: Schaalia hyovaginalis


organism_name: Bacteroides sp.


organism_name: Fenollaria sp.


organism_name: Campylobacter hominis


organism_name: Berryella intestinalis


organism_name: Porphyromonas somerae


organism_name: Suipraeoptans intestinalis


organism_name: [Actinobacillus] rossii


organism_name: Bifidobacterium mongoliense


organism_name: Peptoniphilus sp.


organism_name: Corynebacterium sp.


organism_name: Treponema sp.


organism_name: Sodaliphilus sp.


organism_name: Parabacteroides sp.


organism_name: Candidatus Egerieousia sp.


organism_name: Campylobacter lanienae


organism_name: Succinivibrionaceae bacterium


organism_name: Klebsiella pneumoniae


organism_name: Streptococcus equi subsp. zooepidemicus


organism_name: Salmonella enterica


asm_submitter: University of Waterloo

organism_name: Arcobacter sp.


organism_name: Paracholeplasma sp.


organism_name: Pseudomonadaceae bacterium


organism_name: Methanocorpusculum sp.


asm_submitter: Massachusetts Institute of Technology

infraspecific_name: strain=MIT 1300

organism_name: Prochlorococcus sp. MIT 1300


infraspecific_name: strain=MIT 1307

organism_name: Prochlorococcus sp. MIT 1307


infraspecific_name: strain=MIT 1341

organism_name: Prochlorococcus sp. MIT 1341


asm_submitter: University of Georgia

organism_name: Aeromonas jandaei


organism_name: Serratia nevei


infraspecific_name: strain=MIT 1223

organism_name: Prochlorococcus sp. MIT 1223


organism_name: Serratia marcescens


infraspecific_name: strain=SET


organism_name: Providencia stuartii


organism_name: Campylobacter jejuni


excluded_from_refseq: fragmented assembly


organism_name: Campylobacter coli


excluded_from_refseq: annotation fails completeness check


organism_name: Providencia alcalifaciens


infraspecific_name: strain=MIT 1314

organism_name: Prochlorococcus sp. MIT 1314


asm_submitter: University of Washington Laboratory Medicine

organism_name: Treponema pallidum subsp. pallidum


organism_name: Treponema pallidum


organism_name: Collinsella sp.


organism_name: Clostridium celatum


organism_name: Zhenhengia yiwuensis


organism_name: Pelistega sp.


asm_submitter: King Abdullah University Science and Technology

infraspecific_name: strain=NGH Pa29

organism_name: Pseudomonas aeruginosa


organism_name: Terrisporobacter othiniensis


organism_name: Sodaliphilus sp.


organism_name: Staphylococcus chromogenes


organism_name: Bacteroidaceae bacterium


organism_name: Selenomonas sp.


organism_name: Prevotella sp.


organism_name: Lachnospiraceae bacterium


organism_name: Agathobacter sp.


organism_name: Candidatus Enterosoma sp.


organism_name: Dysosmobacter sp.


organism_name: Eubacteriales bacterium


organism_name: Candidatus Limiplasma sp.


organism_name: Candidatus Choladocola sp.


organism_name: Treponema pallidum


organism_name: Collinsella sp.


organism_name: Campylobacter sp.


organism_name: Parolsenella sp.


organism_name: Candidatus Egerieousia sp.


organism_name: Ruminococcus callidus


organism_name: Megasphaera elsdenii


organism_name: Duodenibacillus sp.


organism_name: Phocaeicola sp.


organism_name: Escherichia coli


organism_name: Erysipelotrichaceae bacterium


organism_name: Pyramidobacter sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Sodaliphilus sp.


organism_name: Limosilactobacillus reuteri


organism_name: Eubacteriales bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Anaerovoracaceae bacterium


organism_name: Clostridium baratii


organism_name: Faecousia sp.


organism_name: Candidatus Enterosoma sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Candidatus Fimivivens sp.


organism_name: Kiritimatiellia bacterium


organism_name: Ruminococcus sp.


organism_name: Clostridiaceae bacterium


organism_name: Fusobacterium perfoetens


organism_name: Prevotella sp.


organism_name: Gallibacter sp.


organism_name: Clostridia bacterium


organism_name: Psychrobacter sanguinis


asm_submitter: Sichuan Agricultural University

excluded_from_refseq: contaminated; from large multi-isolate project

organism_name: Riemerella anatipestifer


excluded_from_refseq: from large multi-isolate project


organism_name: Treponema pallidum


excluded_from_refseq: unverified source organism; from large multi-isolate project


organism_name: Treponema pallidum subsp. pallidum


asm_submitter: Institute of Microbiology, Guangdong Academy of Sciences

organism_name: Patulibacter defluvii


annotation_name: Annotation submitted by Friedrich Schiller University

annotation_provider: Friedrich Schiller University

asm_submitter: Friedrich Schiller University Jena

organism_name: Gemmata algarum


asm_submitter: Universidad de Leon

excluded_from_refseq: many frameshifted proteins

organism_name: Enterobacter asburiae


organism_name: Enterobacter hormaechei


organism_name: Enterobacter ludwigii


organism_name: Enterobacter kobei


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Klebsiella pneumoniae


asm_submitter: PulseNet Next Generation Subtyping Methods Unit

organism_name: Cronobacter sakazakii


asm_submitter: CDC

organism_name: Salmonella enterica


organism_name: Escherichia coli


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Infantis


asm_submitter: National Center for Biotechnology Information

organism_name: Streptococcus suis


organism_name: Salmonella enterica subsp. enterica serovar Muenchen


organism_name: Salmonella enterica subsp. enterica serovar Rissen


organism_name: Salmonella enterica subsp. enterica serovar Dublin


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


asm_submitter: Agriculture and Agri-Food Canada

organism_name: Agathobaculum sp.


organism_name: Intestinimonas butyriciproducens


organism_name: Dysosmobacter sp.


organism_name: Bilophila wadsworthia


organism_name: Enterococcus faecium


organism_name: Anaerotignum sp.


organism_name: Prevotella sp.


organism_name: Vagococcus lutrae


organism_name: Flavonifractor plautii


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Proteus mirabilis


organism_name: Bulleidia sp.


organism_name: Ruminococcus bovis


organism_name: Campylobacter sp.


organism_name: Treponema berlinense


organism_name: Sodaliphilus sp.


organism_name: Eubacteriales bacterium


organism_name: Lachnospiraceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Ruminococcus callidus


organism_name: Catenibacterium mitsuokai


organism_name: Agathobaculum sp.


organism_name: Actinomyces urogenitalis


organism_name: Collinsella sp.


organism_name: Schaalia hyovaginalis


organism_name: Bifidobacterium pseudolongum


organism_name: Staphylococcus hyicus


organism_name: Limosilactobacillus coleohominis


organism_name: Dysosmobacter sp.


organism_name: Prevotella sp.


organism_name: [Clostridium] symbiosum


asm_submitter: UK Health Security Agency

infraspecific_name: strain=ATCC 13382 TET

organism_name: Klebsiella pneumoniae


infraspecific_name: strain=ATCC 13382 RIF


infraspecific_name: strain=ATCC 13382 VAL


infraspecific_name: strain=ATCC 13382 NT


infraspecific_name: strain=ATCC 13382 PAR


infraspecific_name: strain=ATCC 13382 KAN


asm_submitter: University of Campinas

organism_name: Escherichia coli


infraspecific_name: strain=ATCC 13382 CHL


infraspecific_name: strain=ATCC 13382


organism_name: Faecousia sp.


organism_name: Candidatus Ventricola sp.


organism_name: Sodaliphilus sp.


organism_name: Christensenella minuta


organism_name: Lachnospiraceae bacterium


organism_name: Alloprevotella sp.


organism_name: Blautia sp.


organism_name: Wujia sp.


organism_name: Bacilli bacterium


organism_name: Peptoniphilaceae bacterium


organism_name: Candidatus Choladocola sp.


organism_name: Eubacteriales bacterium


organism_name: Candidatus Enterosoma sp.


organism_name: Dialister sp.


organism_name: Christensenellaceae bacterium


organism_name: Treponema sp.


organism_name: Sphaerochaetaceae bacterium


organism_name: Collinsella sp.


organism_name: Candidatus Onthovivens sp.


organism_name: Selenomonadaceae bacterium


organism_name: Prevotella sp.


organism_name: Campylobacter sp.


organism_name: Eubacterium sp.


organism_name: Escherichia coli


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Faecousia sp.


organism_name: Agathobacter sp.


organism_name: Erysipelotrichaceae bacterium


organism_name: Eubacteriales bacterium


organism_name: Phascolarctobacterium succinatutens


organism_name: Candidatus Ventricola sp.


organism_name: Bacteroides fluxus


organism_name: Desulfovibrio porci


organism_name: Bacilli bacterium


organism_name: Streptococcus sp.


organism_name: Candidatus Limiplasma sp.


organism_name: Eggerthellaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Alloprevotella sp.


organism_name: Candidatus Limousia pullorum


organism_name: Candidatus Onthovivens sp.


organism_name: Clostridium sp.


organism_name: Eubacterium sp.


organism_name: Pilosibacter sp.


organism_name: Prevotella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Ruminococcus sp.


organism_name: Butyribacter sp.


organism_name: Eubacteriales bacterium


organism_name: Bullifex sp.


organism_name: Muribaculaceae bacterium


organism_name: Candidatus Limivicinus sp.


organism_name: Sodaliphilus sp.


organism_name: Candidatus Alloenteromonas sp.


organism_name: Pyramidobacter sp.


organism_name: Candidatus Enterosoma sp.


organism_name: Peptoniphilus sp.


organism_name: Porphyromonas somerae


organism_name: Candidatus Limivivens sp.


organism_name: Clostridiaceae bacterium


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Lawsonibacter sp.


organism_name: Bacilli bacterium


organism_name: Prevotella sp.


organism_name: Roseburia lenta


organism_name: Bacteroidaceae bacterium


organism_name: Megamonas funiformis


organism_name: Atopobiaceae bacterium


organism_name: Phocaeicola sp.


organism_name: Desulfovibrio piger


organism_name: Treponema sp.


organism_name: Agathobacter sp.


organism_name: Candidatus Fimenecus sp.


organism_name: Dysosmobacter sp.


organism_name: Anaerotignum sp.


organism_name: Clostridia bacterium


organism_name: Hallerella porci


organism_name: Ezakiella sp.


organism_name: Selenomonadaceae bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: Elusimicrobiaceae bacterium


organism_name: Alloprevotella sp.


organism_name: Tidjanibacter sp.


organism_name: Eubacteriales bacterium


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Prevotella sp.


organism_name: Atopobiaceae bacterium


organism_name: Bacilli bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Onthomorpha sp.


organism_name: Anaerovoracaceae bacterium


organism_name: Dysosmobacter sp.


organism_name: Methanosphaera sp.


organism_name: Romboutsia timonensis


organism_name: Paraeggerthella sp.


organism_name: Mediterraneibacter torques


organism_name: Limosilactobacillus reuteri


organism_name: Dialister histaminiformans


organism_name: Massilioclostridium sp.


organism_name: Eggerthella lenta


organism_name: Peptoniphilaceae bacterium


organism_name: Veillonellaceae bacterium


organism_name: Candidatus Limiplasma sp.


organism_name: Veillonella caviae


organism_name: Ligilactobacillus saerimneri


organism_name: Dorea longicatena


organism_name: Blautia sp.


organism_name: Fusobacterium varium


organism_name: Streptococcus orisratti


organism_name: Evtepia sp.


organism_name: Ligilactobacillus agilis


organism_name: Campylobacter sp.


organism_name: Marinifilaceae bacterium


organism_name: Parafannyhessea umbonata


organism_name: Oscillospiraceae bacterium


organism_name: Enterococcus avium


organism_name: Alloprevotella sp.


organism_name: Collinsella sp.


organism_name: Enterococcus gallinarum


organism_name: Candidatus Pseudoscillospira sp.


organism_name: Fusobacterium gastrosuis


organism_name: Anaerovoracaceae bacterium


organism_name: Candidatus Limiplasma sp.


organism_name: Bacilli bacterium


organism_name: Bullifex sp.


organism_name: Blautia sp.


organism_name: Streptococcus dysgalactiae


organism_name: Negativibacillus massiliensis


organism_name: Eubacterium pyruvativorans


organism_name: Prevotella sp.


organism_name: Pyramidobacter sp.


organism_name: Staphylococcus borealis


organism_name: Ruminococcus callidus


organism_name: Candidatus Metalachnospira sp.


organism_name: Ruminococcus bromii


organism_name: Candidatus Faecenecus gallistercoris


organism_name: Eshraghiella crossota


organism_name: Clostridium sp.


organism_name: Lachnospiraceae bacterium


organism_name: Dialister sp.


organism_name: Oscillospiraceae bacterium


organism_name: Parabacteroides sp.


organism_name: Sodaliphilus sp.


organism_name: Cloacibacillus porcorum


organism_name: Butyricicoccus intestinisimiae


organism_name: Eubacterium sp.


organism_name: Bacilli bacterium


organism_name: Eubacteriales bacterium


organism_name: Blautia sp.


organism_name: Roseburia sp.


organism_name: Escherichia coli


organism_name: Allofournierella sp.


organism_name: Akkermansia muciniphila


organism_name: Alistipes finegoldii


organism_name: Mediterraneibacter gnavus


organism_name: Peptostreptococcus porci


organism_name: Evtepia sp.


organism_name: Ellagibacter isourolithinifaciens


organism_name: Terrisporobacter sp.


organism_name: Sodaliphilus sp.


organism_name: Lachnospiraceae bacterium


organism_name: Campylobacter sp.


organism_name: Pseudoflavonifractor sp.


organism_name: Bacilli bacterium


organism_name: Paludibacteraceae bacterium


organism_name: Prevotella sp.


organism_name: Sutterella sp.


organism_name: Bacteroidales bacterium


organism_name: Acidaminococcus fermentans


organism_name: Faecalibacterium sp.


organism_name: Treponema sp.


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Onthovivens sp.


organism_name: Eubacteriales bacterium


organism_name: Christensenellaceae bacterium


organism_name: Candidatus Enterosoma sp.


organism_name: Sodaliphilus sp.


organism_name: Treponema porcinum


organism_name: Peptoniphilaceae bacterium


organism_name: Faecousia sp.


organism_name: Collinsella sp.


organism_name: Lachnospiraceae bacterium


organism_name: Bacilli bacterium


organism_name: Candidatus Fimadaptatus sp.


organism_name: Prevotella sp.


organism_name: Candidatus Limivicinus sp.


organism_name: Bacteroides uniformis


organism_name: Schaedlerella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Onthovivens sp.


organism_name: Bariatricus sp.


organism_name: Eubacteriales bacterium


organism_name: Gemmiger qucibialis


organism_name: Porcincola intestinalis


organism_name: Treponema sp.


asm_submitter: CSIR-National Environmental Engineering Research Institute

infraspecific_name: strain=CRN 29

organism_name: Serratia marcescens


asm_submitter: Faculte de Medecine, Universite Paris-Sud

organism_name: Enterobacter roggenkampii


organism_name: Enterobacter asburiae


asm_submitter: Veterinary Science, Chulalongkorn University

organism_name: Lactococcus lactis subsp. lactis


asm_submitter: Nanjing Agricultural University

organism_name: Pectobacterium brasiliense


organism_name: Pectobacterium actinidiae


asm_submitter: Jiangnan University

organism_name: Streptococcus fermentans


organism_name: Streptococcus jiangnanensis


organism_name: Streptococcus wuxiensis


organism_name: Streptococcus sp. BJSWXB3CM3


organism_name: Streptococcus sp. BJSWXB6CM1


organism_name: Pectobacterium aroidearum


organism_name: Pectobacterium carotovorum subsp. carotovorum


asm_submitter: Centre of Biotechnology of Sfax

organism_name: Bacillus thuringiensis


asm_submitter: Wayne State University

organism_name: Staphylococcus aureus


asm_name: BSN61 Closure


asm_submitter: Swedish University of Agricultural Sciences

organism_name: Pseudomonas salmasensis


asm_submitter: Institute of Agricultural Resources and Regional Planning,CAAS

organism_name: Xanthomonas sp. LF02-5


asm_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University

organism_name: Pseudomonas putida


organism_name: Xanthomonas sp. LF04-12


organism_name: Xanthomonas sp. LF06-19


organism_name: Xanthomonas sp. LF07-6


asm_submitter: Fudan University

organism_name: Bacillus paranthracis


asm_submitter: Faculty of Science and Technology of Tangier

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Enterococcus mundtii


asm_submitter: Shanghai University of Medicine and Health Sciences Affiliated Zhoupu Hospital

organism_name: Klebsiella pneumoniae


organism_name: Pectobacterium brasiliense


organism_name: Porphyromonas sp.


organism_name: Faecalicoccus sp.


organism_name: Megasphaera elsdenii


organism_name: Oscillospiraceae bacterium


organism_name: Prevotella sp.


organism_name: Campylobacter coli


organism_name: [Pasteurella] mairii


organism_name: Bacteroides pyogenes


organism_name: Clostridium sp.


organism_name: Schaalia hyovaginalis


infraspecific_name: strain=CRN 30

organism_name: Streptomyces sp. CRN 30


organism_name: Enterobacter cloacae subsp. cloacae


organism_name: Enterobacter asburiae


organism_name: Enterobacter ludwigii


organism_name: Enterobacter roggenkampii


organism_name: Enterobacter sp. 302C9


organism_name: Enterobacter bugandensis


organism_name: Enterobacter sp. 296B2


organism_name: Enterobacter sp. 276E10


organism_name: Enterobacter kobei


organism_name: Enterobacter sp. 262D3


organism_name: Enterobacter sp. 241F3


organism_name: Enterobacter sp. 237C8


organism_name: Enterobacter mori


organism_name: Enterobacter sp. 229I2


organism_name: Enterobacter sp. 214E4


organism_name: Enterobacter vonholyi


organism_name: Enterobacter sichuanensis


organism_name: Enterobacter cloacae subsp. cloacae


organism_name: Enterobacter asburiae


organism_name: Enterobacter ludwigii


organism_name: Enterobacter sp. 168J2


organism_name: Enterobacter sp. 166D1


organism_name: Enterobacter sp. 148H3


organism_name: Enterobacter sp. 146F3


organism_name: Enterobacter sp. 118C5


organism_name: Enterobacter roggenkampii


organism_name: Enterobacter sp. 61D5


asm_submitter: Suzhou Medical College, Soochow University

organism_name: Neisseria meningitidis


asm_submitter: Agriculture and Agri-Food Canada

organism_name: Prevotella sp.


organism_name: Blautia sp.


organism_name: Eubacteriales bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Clostridium perfringens


organism_name: Helicobacter bilis


organism_name: Sodaliphilus sp.


organism_name: Ruminococcus sp.


organism_name: Selenomonas sp.


organism_name: Parafannyhessea umbonata


excluded_from_refseq: unverified source organism; annotation fails completeness check; from large multi-isolate project


asm_submitter: Paris Saclay University

organism_name: Escherichia coli


asm_submitter: University of Bristol

organism_name: Mesoflavibacter sp.


organism_name: Octadecabacter sp.


organism_name: Gammaproteobacteria bacterium


organism_name: Oleispira sp.


organism_name: Alteromonas sp.


organism_name: Bermanella sp.


organism_name: Colwellia sp.


organism_name: Planktomarina sp.


organism_name: Pseudomonas sp.


organism_name: Pseudomonadales bacterium


organism_name: Polaribacter sp.


organism_name: Neptunomonas sp.


organism_name: Flavobacteriaceae bacterium


organism_name: Porticoccaceae bacterium


organism_name: Pseudoalteromonas sp.


organism_name: Paraglaciecola sp.


organism_name: Oleiphilaceae bacterium


organism_name: Acidimicrobiia bacterium


organism_name: Cyclobacteriaceae bacterium


organism_name: Reinekea sp.


organism_name: Candidatus Altimarinota bacterium


organism_name: Dinoroseobacter sp.


organism_name: Bermanella sp.


organism_name: Sphingobium sp.


organism_name: Paracoccaceae bacterium


organism_name: Flavobacterium sp.


organism_name: Cryomorphaceae bacterium


organism_name: Bacteroidia bacterium


organism_name: Psychrosphaera sp.


organism_name: Rickettsiales bacterium


organism_name: Cellvibrionaceae bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Colwellia sp.


organism_name: Flavobacteriaceae bacterium


organism_name: Amylibacter sp.


organism_name: Methylophilaceae bacterium


organism_name: Porticoccaceae bacterium


organism_name: Saccharospirillaceae bacterium


organism_name: Ascidiaceihabitans sp.


organism_name: Paraglaciecola sp.


organism_name: Erythrobacter sp.


organism_name: Thalassolituus sp.


organism_name: Paracoccaceae bacterium


organism_name: Flavobacteriales bacterium


organism_name: Psychroserpens sp.


organism_name: Candidatus Thioglobus sp.


organism_name: Polaribacter sp.


organism_name: Crocinitomicaceae bacterium


organism_name: Alteromonas sp.


organism_name: Pseudophaeobacter sp.


organism_name: Bacteroidia bacterium


organism_name: Colwellia sp.


organism_name: Flavobacteriaceae bacterium


organism_name: Cyclobacteriaceae bacterium


organism_name: Glaciecola sp.


organism_name: Candidatus Altimarinota bacterium


organism_name: Pseudomonadales bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Methylophilaceae bacterium


organism_name: Bermanella sp.


organism_name: Zhongshania sp.


organism_name: Oleispira sp.


organism_name: Cellvibrionaceae bacterium


organism_name: Emcibacteraceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Maribacter sp.


organism_name: Hyphomicrobiales bacterium


organism_name: Porticoccus sp.


organism_name: Planktomarina sp.


organism_name: Candidatus Flemingiibacterium sp.


organism_name: Escherichia coli


organism_name: Campylobacter sp.


organism_name: Prevotella sp.


organism_name: Evtepia sp.


organism_name: Enterococcus faecalis


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Roseburia faecis


organism_name: Collinsella sp.


excluded_from_refseq: derived from metagenome

organism_name: Gemmiger sp.


organism_name: Candidatus Treponema excrementipullorum


organism_name: Bacteroides fragilis


organism_name: Bacteroides uniformis


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: [Pasteurella] aerogenes


organism_name: Erysipelotrichaceae bacterium


organism_name: Lactobacillus johnsonii


organism_name: Helicobacter sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome


organism_name: Butyricicoccus sp.


organism_name: Mitsuokella sp.


organism_name: Dialister sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Lachnospiraceae bacterium


organism_name: Eubacteriales bacterium


organism_name: Sodaliphilus sp.


organism_name: Treponema porcinum


organism_name: Candidatus Limivicinus sp.


organism_name: Faecousia sp.


organism_name: Butyricicoccus porcorum


organism_name: Alloprevotella sp.


organism_name: Anaerovibrio sp.


organism_name: Bariatricus sp.


organism_name: Paludibacteraceae bacterium


organism_name: Parabacteroides sp.


organism_name: Prevotella sp.


organism_name: Treponema sp.


organism_name: Bacteroidales bacterium


organism_name: Candidatus Spyradocola sp.


organism_name: Atopobium sp.


organism_name: Tractidigestivibacter sp.


organism_name: Schaalia hyovaginalis


organism_name: Streptococcus hyovaginalis


organism_name: Lachnospiraceae bacterium


organism_name: Enterocloster aldenensis


organism_name: Enterococcus faecalis


organism_name: [Actinobacillus] rossii


organism_name: Alloprevotella sp.


organism_name: Faecousia sp.


organism_name: Candidatus Ventricola sp.


organism_name: Streptococcus hyointestinalis


organism_name: Bacilli bacterium


organism_name: Prevotella sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Eubacteriales bacterium


organism_name: Candidatus Methanarcanum hacksteinii


organism_name: Parabacteroides sp.


organism_name: Sodaliphilus sp.


organism_name: Collinsella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Enterosoma sp.


organism_name: Intestinibacter sp.


organism_name: Dialister histaminiformans


organism_name: Anaerobutyricum hallii


organism_name: Candidatus Choladocola sp.


organism_name: Candidatus Onthomorpha sp.


organism_name: Bacteroides uniformis


organism_name: Sphaerochaetaceae bacterium


organism_name: Peptostreptococcus porci


organism_name: Bacteroides thetaiotaomicron


organism_name: Alistipes senegalensis


organism_name: Lachnospiraceae bacterium


organism_name: Clostridium tertium


organism_name: Faecalimonas umbilicata


organism_name: [Pasteurella] aerogenes


organism_name: Dorea formicigenerans


organism_name: Candidatus Limivicinus sp.


organism_name: Bacilli bacterium


organism_name: Prevotella sp.


organism_name: Candidatus Enterosoma sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Eubacteriales bacterium


organism_name: Sodaliphilus sp.


organism_name: Faecousia sp.


organism_name: Erysipelotrichaceae bacterium


organism_name: Eubacterium sp.


organism_name: Bacteroidaceae bacterium


organism_name: Alloprevotella sp.


organism_name: Muribaculaceae bacterium


organism_name: Aerococcus suis


organism_name: Christensenellaceae bacterium


organism_name: Collinsella sp.


organism_name: Eubacterium coprostanoligenes


organism_name: Treponema sp.


organism_name: Desulfovibrio sp.


organism_name: Parabacteroides distasonis


organism_name: Atopobiaceae bacterium


organism_name: Bifidobacterium tsurumiense


organism_name: Pseudoflavonifractor capillosus


organism_name: Oliverpabstia sp.


organism_name: Sodaliphilus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Blautia sp.


organism_name: Dialister sp.


organism_name: Wylensekiella montiformis


organism_name: Lachnospiraceae bacterium


organism_name: Prevotella sp.


asm_submitter: University of Sao Paulo

infraspecific_name: strain=ICBPETVRE

organism_name: Enterococcus faecium


organism_name: Ruminococcus bromii


organism_name: Terrisporobacter sp.


organism_name: Absicoccus porci


organism_name: Collinsella sp.


organism_name: Candidatus Treponema excrementipullorum


organism_name: Escherichia coli


organism_name: Lactobacillus amylovorus


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Thomasclavelia ramosa


organism_name: Clostridium paraputrificum


organism_name: Veillonella caviae


organism_name: Actinobacillus minor


organism_name: Megasphaera elsdenii


organism_name: Bacteroidaceae bacterium


organism_name: Alloprevotella sp.


organism_name: Prevotella sp.


organism_name: Sodaliphilus sp.


organism_name: Lachnospira sp.


organism_name: Eubacteriales bacterium


organism_name: Bacilli bacterium


organism_name: Gemmiger sp.


organism_name: Desulfovibrio sp.


organism_name: Faecousia sp.


organism_name: Candidatus Fimisoma sp.


organism_name: Treponema sp.


organism_name: Lachnospiraceae bacterium


organism_name: Parabacteroides sp.


organism_name: Bulleidia sp.


organism_name: Campylobacter sp.


organism_name: Erysipelotrichaceae bacterium


organism_name: Floccifex porci


organism_name: Bacteroidaceae bacterium


organism_name: Prevotella pectinovora


organism_name: Enterocloster clostridioformis


organism_name: Sodaliphilus sp.


organism_name: Prevotella sp.


organism_name: Fusobacterium mortiferum


organism_name: Phocaeicola vulgatus


organism_name: Streptococcus thoraltensis


organism_name: Pygmaiobacter massiliensis


organism_name: Bacteroidales bacterium


organism_name: Muribaculaceae bacterium


organism_name: Candidatus Enterosoma sp.


organism_name: Pararoseburia sp.


organism_name: Dialister sp.


organism_name: Bullifex sp.


organism_name: Lachnospiraceae bacterium


organism_name: Ruminococcus sp.


organism_name: Turicibacter bilis


organism_name: Frisingicoccus sp.


organism_name: Parabacteroides sp.


organism_name: Bacilli bacterium


organism_name: Prevotella sp.


organism_name: Treponema sp.


organism_name: Escherichia coli


organism_name: Collinsella sp.


organism_name: Paludibacteraceae bacterium


organism_name: Candidatus Onthovivens sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Candidatus Onthomorpha sp.


organism_name: Campylobacter sp.


organism_name: [Clostridium] scindens


organism_name: Candidatus Ventricola sp.


organism_name: Faecalicoccus sp.


organism_name: Limosilactobacillus sp.


organism_name: Butyricimonas virosa


organism_name: Phocaeicola faecicola


organism_name: Dialister sp.


organism_name: Alloprevotella sp.


organism_name: Eubacterium sp.


organism_name: Anaerovibrio sp.


organism_name: Sodaliphilus sp.


organism_name: Christensenellaceae bacterium


organism_name: Sphaerochaetaceae bacterium


organism_name: Agathobacter sp.


organism_name: Candidatus Fimenecus sp.


organism_name: Gemmiger sp.


organism_name: Oscillospiraceae bacterium


organism_name: Prevotella sp.


organism_name: Muribaculaceae bacterium


organism_name: Eubacteriales bacterium


organism_name: Treponema sp.


organism_name: Frisingicoccus sp.


organism_name: Clostridium fessum


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Parabacteroides distasonis


organism_name: Candidatus Onthomorpha sp.


organism_name: Phascolarctobacterium sp.


organism_name: Collinsella sp.


organism_name: Candidatus Alloenteromonas sp.


organism_name: Candidatus Onthovivens sp.


organism_name: Desulfovibrio sp.


organism_name: Alistipes shahii


organism_name: Clostridium cadaveris


organism_name: Candidatus Limisoma sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Prevotella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Dialister sp.


organism_name: Lentihominibacter sp.


organism_name: Chlamydia suis


organism_name: Bacilli bacterium


excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small

organism_name: Ruminococcus callidus


organism_name: Escherichia coli


organism_name: Erysipelotrichaceae bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Onthomonas sp.


organism_name: Succinivibrio sp.


organism_name: Eubacteriales bacterium


organism_name: Dysosmobacter sp.


organism_name: Clostridia bacterium


organism_name: Treponema sp.


organism_name: Ellagibacter isourolithinifaciens


organism_name: Ruminococcus bromii


organism_name: Prevotella sp.


organism_name: Bifidobacterium animalis


organism_name: Oscillospiraceae bacterium


organism_name: Butyricimonas virosa


organism_name: Atopobiaceae bacterium


organism_name: Sodaliphilus sp.


organism_name: Lawsonibacter sp.


organism_name: Oliverpabstia sp.


organism_name: Blautia sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Treponema porcinum


organism_name: Phascolarctobacterium sp.


organism_name: Eubacteriales bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Egerieousia sp.


organism_name: Hallerella succinigenes


organism_name: Anaerovibrio sp.


organism_name: Megasphaera elsdenii


organism_name: Oscillospiraceae bacterium


organism_name: Bullifex sp.


organism_name: Paludibacteraceae bacterium


organism_name: Succinivibrio sp.


organism_name: Bacilli bacterium


organism_name: Candidatus Limivicinus sp.


organism_name: Streptococcus suis


organism_name: Faecalicoccus sp.


organism_name: Sodaliphilus sp.


organism_name: Collinsella sp.


organism_name: Clostridium sp.


organism_name: Agathobacter sp.


organism_name: Prevotella sp.


organism_name: Alloprevotella sp.


organism_name: Actinobacillus minor


organism_name: Faecalimonas umbilicata


organism_name: Lactobacillus johnsonii


organism_name: Staphylococcus simulans


organism_name: Fusicatenibacter saccharivorans


organism_name: Dialister sp.


organism_name: Bilifractor sp.


organism_name: Bacteroidaceae bacterium


organism_name: Treponema porcinum


organism_name: Treponema sp.


organism_name: Campylobacter sp.


organism_name: Treponema succinifaciens


organism_name: Muribaculaceae bacterium


asm_submitter: Capital Region

organism_name: Actinotignum timonense


organism_name: Actinotignum urinale


organism_name: Actinotignum sanguinis


organism_name: Actinobaculum suis


organism_name: Actinotignum sp. SLA_B059


excluded_from_refseq: fragmented assembly


asm_submitter: Museum national Histoire naturelle

organism_name: Streptomyces sp. S399


asm_submitter: Binzhou University

organism_name: Escherichia coli


asm_submitter: Policlinico Sant'Orsola-Malpighi

organism_name: Listeria monocytogenes


asm_submitter: Yangzhou University


asm_submitter: SunMoon University

organism_name: Glutamicibacter protophormiae


asm_submitter: FDA

organism_name: Salmonella enterica


organism_name: Flavobacterium sp. NG2


organism_name: Algoriphagus sp. NG3


asm_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)

organism_name: Klebsiella aerogenes


organism_name: Candidatus Onthovivens sp.


organism_name: Spirochaetia bacterium


asm_submitter: University of Chinese Academy of Sciences

organism_name: Stutzerimonas stutzeri


asm_submitter: National Institute of Agricultural Sciences, Rural Development Administration

infraspecific_name: strain=KACC 19337

organism_name: Microbacterium rhizosphaerae


asm_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University

organism_name: Leuconostoc citreum


organism_name: Leuconostoc falkenbergense


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


asm_submitter: Aarhus Universityhospital

organism_name: Dielma fastidiosa


asm_submitter: CDC


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


organism_name: Klebsiella pneumoniae


asm_submitter: Utah Public Health Laboratory Infectious Disease submission group


organism_name: Pseudomonas aeruginosa


asm_submitter: University of Copenhagen

organism_name: Phocaeicola dorei


organism_name: Bacteroides ovatus


organism_name: Enterocloster bolteae


organism_name: Bacteroides fragilis


organism_name: Bacteroides thetaiotaomicron


organism_name: Klebsiella variicola


organism_name: Hungatella effluvii


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides xylanisolvens


organism_name: Bacteroides faecis


organism_name: Bacteroides cellulosilyticus


organism_name: Bacteroides nordii


organism_name: Klebsiella oxytoca


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Hungatella sp.


organism_name: Parabacteroides distasonis


organism_name: Hungatella hathewayi


organism_name: Bacteroides sp.


organism_name: Eisenbergiella sp.


organism_name: Enterocloster citroniae


organism_name: Klebsiella michiganensis


organism_name: Enterocloster bolteae


organism_name: Enterocloster aldenensis


organism_name: Bacteroides caccae


organism_name: Bacteroides fragilis


organism_name: Phocaeicola vulgatus


organism_name: Phocaeicola dorei


excluded_from_refseq: contaminated; derived from metagenome


organism_name: Bacteroides thetaiotaomicron


organism_name: Salmonella enterica


organism_name: Klebsiella aerogenes


organism_name: Bacteroides ovatus


organism_name: Bacteroides cellulosilyticus


organism_name: Bacteroides salyersiae


organism_name: Parabacteroides distasonis


organism_name: Bacteroides sp.


organism_name: Bacteroides faecis


organism_name: Eisenbergiella porci


organism_name: Hungatella effluvii


organism_name: Bacteroides xylanisolvens


organism_name: Enterocloster asparagiformis


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small


organism_name: Mediterraneibacter sp.


organism_name: Enterocloster lavalensis


organism_name: Enterocloster aldenensis


organism_name: Eisenbergiella sp.


organism_name: Robinsoniella sp.


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides thetaiotaomicron


organism_name: Bacteroides fragilis


organism_name: Hungatella sp.


organism_name: Phocaeicola dorei


excluded_from_refseq: from large multi-isolate project

organism_name: Salmonella enterica


organism_name: Bacteroides cellulosilyticus


organism_name: Parabacteroides distasonis


organism_name: Enterocloster bolteae


organism_name: Klebsiella aerogenes


organism_name: Enterobacter hormaechei


organism_name: Bacteroides ovatus


organism_name: Hungatella effluvii


organism_name: Bacteroides sp.


organism_name: Enterocloster aldenensis


organism_name: Klebsiella michiganensis


organism_name: Bacteroides clarus


organism_name: Phocaeicola vulgatus


organism_name: Acinetobacter baumannii


organism_name: Bacteroides fragilis


organism_name: Bacteroides faecis


organism_name: Citrobacter freundii


organism_name: Klebsiella pneumoniae


organism_name: Phocaeicola dorei


asm_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion

organism_name: Pseudomonas aeruginosa


organism_name: Bacteroides thetaiotaomicron


organism_name: Parabacteroides distasonis


organism_name: Salmonella enterica


organism_name: Klebsiella oxytoca


organism_name: Klebsiella aerogenes


asm_submitter: National Center for Biotechnology Information

organism_name: Clostridioides difficile


organism_name: Legionella pneumophila


organism_name: Hungatella effluvii


organism_name: Bacteroides ovatus


organism_name: Bacteroides nordii


organism_name: Bacteroides cellulosilyticus


organism_name: Bacteroides fragilis


organism_name: Enterocloster bolteae


organism_name: Phocaeicola vulgatus


organism_name: Citrobacter sp.


organism_name: Bacteroides sp.


organism_name: Phocaeicola sp.


organism_name: Phocaeicola dorei


organism_name: Bacteroides thetaiotaomicron


organism_name: Bacteroides faecis


organism_name: Parabacteroides distasonis


organism_name: Klebsiella michiganensis


organism_name: Citrobacter farmeri


organism_name: Klebsiella oxytoca


organism_name: Klebsiella aerogenes


organism_name: Bacteroides ovatus


organism_name: Hungatella sp.


organism_name: Fusobacterium sp.


organism_name: Bacteroides intestinalis


organism_name: Hungatella effluvii


organism_name: Eisenbergiella porci


organism_name: Bacteroides xylanisolvens


organism_name: Phocaeicola vulgatus


organism_name: Enterocloster bolteae


organism_name: Bacteroides fragilis


organism_name: Bacteroides thetaiotaomicron


organism_name: Phocaeicola dorei


organism_name: Bacteroides faecis


organism_name: Escherichia coli


organism_name: Morganella morganii


organism_name: Enterocloster aldenensis


organism_name: Parabacteroides distasonis


organism_name: Klebsiella pneumoniae


organism_name: Bacteroides cellulosilyticus


organism_name: Bacteroides ovatus


organism_name: Klebsiella aerogenes


excluded_from_refseq: derived from metagenome; genome length too large


organism_name: Phocaeicola sp.


organism_name: Hungatella effluvii


organism_name: Bacteroides caccae


organism_name: Phocaeicola vulgatus


organism_name: Enterocloster bolteae


organism_name: Enterocloster asparagiformis


organism_name: Bacteroides fragilis


organism_name: Bacteroides thetaiotaomicron


organism_name: Phocaeicola dorei


organism_name: Klebsiella variicola


organism_name: Enterocloster clostridioformis


organism_name: Bacteroides faecis


organism_name: Bacteroides sp.


organism_name: Klebsiella oxytoca


organism_name: Bacteroides cellulosilyticus


organism_name: Klebsiella pneumoniae


organism_name: Bacteroides xylanisolvens


organism_name: Parabacteroides distasonis


organism_name: Butyricimonas paravirosa


organism_name: Bacteroides ovatus


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides intestinalis


organism_name: Eisenbergiella porci


organism_name: Enterocloster bolteae


organism_name: Bacteroides fragilis


organism_name: Bacteroides thetaiotaomicron


organism_name: Klebsiella aerogenes


organism_name: Phocaeicola dorei


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome; fragmented assembly; genome length too small


organism_name: Bacteroides reticulotermitis


organism_name: Enterocloster aldenensis


organism_name: Bacteroides sp.


organism_name: Hungatella effluvii


organism_name: Klebsiella oxytoca


organism_name: Bacteroides xylanisolvens


organism_name: Parabacteroides distasonis


organism_name: Bacillus norwichensis


organism_name: Hungatella sp.


organism_name: Bacteroides cellulosilyticus


organism_name: Bacteroides caccae


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides ovatus


organism_name: Klebsiella michiganensis


organism_name: Bacteroides thetaiotaomicron


organism_name: Bacteroides fragilis


organism_name: Enterocloster bolteae


organism_name: Eisenbergiella porci


organism_name: Phocaeicola dorei


organism_name: Bacteroides faecis


organism_name: Bacteroides sp.


organism_name: Eisenbergiella tayi


organism_name: Bacteroides intestinalis


organism_name: Parabacteroides merdae


organism_name: Bacteroides salyersiae


organism_name: Hungatella sp.


asm_submitter: Kyunghee University

organism_name: Streptococcus lingualis


organism_name: Phocaeicola sp.


organism_name: Bacteroides xylanisolvens


organism_name: Enterocloster aldenensis


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides thetaiotaomicron


organism_name: Bacteroides fragilis


organism_name: Parabacteroides distasonis


organism_name: Bacteroides ovatus


organism_name: Legionella pneumophila


organism_name: Salmonella enterica


organism_name: Phocaeicola dorei


organism_name: Clostridioides difficile


excluded_from_refseq: unverified source organism; from large multi-isolate project

organism_name: Stenotrophomonas maltophilia


organism_name: Eisenbergiella tayi


organism_name: Bacteroides cellulosilyticus


organism_name: Bacteroides faecis


organism_name: Enterocloster clostridioformis


organism_name: Hungatella effluvii


organism_name: Bacteroides xylanisolvens


organism_name: Butyricimonas paravirosa


organism_name: Phocaeicola vulgatus


organism_name: Hungatella sp.


organism_name: Klebsiella variicola


organism_name: Bacteroides thetaiotaomicron


organism_name: Bacteroides ovatus


organism_name: Escherichia coli


organism_name: Bacteroides fragilis


organism_name: Phocaeicola dorei


organism_name: Bacteroides sp.


organism_name: Clostridioides difficile


organism_name: Klebsiella pneumoniae


organism_name: Klebsiella quasipneumoniae


organism_name: Streptococcus dentalis


organism_name: Parabacteroides distasonis


organism_name: Stenotrophomonas maltophilia


organism_name: Bacteroides cellulosilyticus


organism_name: Klebsiella michiganensis


organism_name: Bacteroides faecis


excluded_from_refseq: contaminated; from large multi-isolate project


organism_name: Hungatella sp.


organism_name: Enterocloster aldenensis


organism_name: Phocaeicola vulgatus


organism_name: Eisenbergiella tayi


organism_name: Enterocloster bolteae


organism_name: Bacteroides clarus


organism_name: Escherichia coli


organism_name: Bacteroides xylanisolvens


organism_name: Clostridioides difficile


organism_name: Bacteroides fragilis


organism_name: Clostridium neonatale


organism_name: Hungatella effluvii


organism_name: Phocaeicola dorei


organism_name: Bacteroides nordii


organism_name: Bacteroides thetaiotaomicron


organism_name: Parabacteroides distasonis


organism_name: Bacteroides ovatus


organism_name: Phocaeicola sp.


organism_name: Bacteroides cellulosilyticus


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides caccae


organism_name: Parabacteroides goldsteinii


organism_name: Enterocloster bolteae


organism_name: Klebsiella pneumoniae


organism_name: Salmonella enterica


organism_name: Stenotrophomonas maltophilia


organism_name: Bacteroides faecis


organism_name: Hungatella sp.


organism_name: Clostridioides difficile


organism_name: Phocaeicola dorei


organism_name: Bacteroides xylanisolvens


organism_name: Bacteroides fragilis


organism_name: Bacteroides thetaiotaomicron


organism_name: Parabacteroides distasonis


organism_name: Bacteroides ovatus


organism_name: Enterobacter sp.


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides cellulosilyticus


organism_name: Hungatella effluvii


organism_name: Eisenbergiella sp.


excluded_from_refseq: unverified source organism; derived from metagenome


organism_name: Eisenbergiella porci


organism_name: Enterocloster bolteae


organism_name: Escherichia coli


organism_name: Klebsiella oxytoca


organism_name: Enterocloster aldenensis


organism_name: Salmonella enterica


organism_name: Clostridioides difficile


organism_name: Bacteroides xylanisolvens


asm_submitter: Fisheries Research Institute of Jiangxi Province

organism_name: Aeromonas dhakensis


organism_name: Bacteroides fragilis


organism_name: Klebsiella variicola


organism_name: Parabacteroides distasonis


organism_name: Phocaeicola dorei


organism_name: Bacteroides ovatus


organism_name: Bacteroides sp.


organism_name: Bacteroides thetaiotaomicron


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides cellulosilyticus


asm_submitter: FDA/CFSAN

organism_name: Cronobacter sakazakii


organism_name: Hungatella sp.


organism_name: Bacteroides faecis


asm_submitter: Public Health England

organism_name: Yersinia enterocolitica


asm_submitter: FDA Center for Food Safety and Applied Nutrition

organism_name: Listeria monocytogenes


organism_name: Legionella pneumophila


organism_name: Enterocloster bolteae


organism_name: Parabacteroides goldsteinii


organism_name: Eisenbergiella porci


organism_name: Blautia producta


organism_name: Phocaeicola sp.


organism_name: Bacteroides fragilis


organism_name: Bacteroides xylanisolvens


organism_name: Bacteroides sp.


organism_name: Klebsiella michiganensis


organism_name: Bacteroides ovatus


organism_name: Bacteroides thetaiotaomicron


organism_name: Phocaeicola vulgatus


organism_name: Enterocloster aldenensis


organism_name: Hungatella effluvii


organism_name: Bacteroides faecis


organism_name: Klebsiella oxytoca


organism_name: Salmonella enterica


organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


organism_name: Legionella pneumophila


organism_name: Hungatella sp.


organism_name: Yersinia enterocolitica


organism_name: Parabacteroides distasonis


organism_name: Bacteroides xylanisolvens


asm_submitter: Health Protection Agency


organism_name: Enterocloster bolteae


organism_name: Bacteroides fragilis


organism_name: Stenotrophomonas maltophilia


organism_name: Bacteroides thetaiotaomicron


organism_name: Phocaeicola dorei


organism_name: Phocaeicola vulgatus


organism_name: Clostridioides difficile


organism_name: Bacteroides cellulosilyticus


organism_name: Bacteroides faecis


organism_name: Bacteroides ovatus


organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


organism_name: Clostridia bacterium


organism_name: Faecalicatena contorta


organism_name: Prevotellaceae bacterium


organism_name: Lysinibacillus capsici


organism_name: Bacteroides sp.


organism_name: Bacteroides intestinalis


organism_name: Bacteroides salyersiae


organism_name: Bacteroides fragilis


organism_name: Bacteroides thetaiotaomicron


organism_name: Stenotrophomonas maltophilia


excluded_from_refseq: unverified source organism; derived from metagenome; fragmented assembly; genome length too small

organism_name: Parabacteroides distasonis


organism_name: Phocaeicola dorei


organism_name: Clostridioides difficile


organism_name: Bacteroides cellulosilyticus


organism_name: Bacteroides nordii


organism_name: Bacteroides ovatus


organism_name: Bacteroides faecis


organism_name: Oscillospiraceae bacterium


organism_name: Enterococcus durans


organism_name: Hungatella effluvii


organism_name: Bacillus sp. (in: firmicutes)


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides intestinalis


organism_name: Escherichia coli


organism_name: Bacteroides sp.


organism_name: Cronobacter sakazakii


organism_name: Salmonella enterica


organism_name: Bacteroides thetaiotaomicron


organism_name: Faecalicatena contorta


organism_name: Shigella sonnei


organism_name: Klebsiella pneumoniae


organism_name: Bacteroides cellulosilyticus


organism_name: Phocaeicola dorei


organism_name: Pseudomonas aeruginosa


organism_name: Citrobacter braakii


organism_name: Indolivaga capnocytophagoides


organism_name: Bacillota bacterium


organism_name: Fusobacterium nucleatum


organism_name: Eisenbergiella tayi


organism_name: Clostridia bacterium


organism_name: Parabacteroides goldsteinii


organism_name: Bacteroides intestinalis


organism_name: Bacteroides faecis


organism_name: Bacteroides nordii


organism_name: Parabacteroides distasonis


organism_name: Bacteroides xylanisolvens


asm_submitter: IGA Technology Services Srl

organism_name: Enterococcus faecalis


excluded_from_refseq: contaminated

organism_name: Lactococcus lactis


organism_name: Phocaeicola vulgatus


organism_name: Enterococcus faecium


organism_name: Phocaeicola dorei


organism_name: Bacteroides sp.


organism_name: Bacteroides ovatus


organism_name: Bacteroides fragilis


organism_name: Bacteroides cellulosilyticus


organism_name: Eisenbergiella sp.


organism_name: Hungatella effluvii


organism_name: Clostridium neonatale


organism_name: Bacteroides thetaiotaomicron


organism_name: Hungatella sp.


organism_name: Butyricimonas paravirosa


organism_name: Escherichia coli


organism_name: Clostridioides difficile


organism_name: Bacteroides faecis


excluded_from_refseq: derived from metagenome; genome length too small


organism_name: Klebsiella pneumoniae


excluded_from_refseq: derived from metagenome

organism_name: Phocaeicola vulgatus


organism_name: Klebsiella grimontii


organism_name: Blautia producta


organism_name: Phocaeicola dorei


organism_name: Parabacteroides distasonis


organism_name: Stenotrophomonas maltophilia


organism_name: Salmonella enterica


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


asm_submitter: FDA


organism_name: Shigella sonnei


organism_name: Campylobacter fetus


organism_name: Campylobacter upsaliensis


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


isolate: Key


organism_name: Acinetobacter baumannii


organism_name: Pseudomonas aeruginosa


organism_name: Escherichia coli


organism_name: Enterococcus faecalis


organism_name: Shigella flexneri


infraspecific_name: strain=clinical isolate of L. monocytogenes

organism_name: Listeria monocytogenes


asm_submitter: Agriculture and Agri-Food Canada

organism_name: Helicobacter trogontum


organism_name: Sodaliphilus sp.


organism_name: Succinivibrio sp.


organism_name: Streptococcus alactolyticus


organism_name: Butyribacter sp.


organism_name: Prevotella sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Bacteroidaceae bacterium


organism_name: Candidatus Aphodosoma sp.


organism_name: Eubacteriales bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Megasphaera elsdenii


organism_name: Lachnospiraceae bacterium


organism_name: Methanobrevibacter smithii


organism_name: Intestinibacter sp.


organism_name: Gemmiger sp.


organism_name: Candidatus Cryptobacteroides sp.


asm_submitter: CDC

organism_name: Salmonella enterica


organism_name: Listeria monocytogenes


organism_name: Parabacteroides distasonis


organism_name: Ligilactobacillus salivarius


organism_name: Sutterella parvirubra


organism_name: Faecalicoccus sp.


organism_name: Bacteroides helcogenes


organism_name: Alistipes senegalensis


organism_name: Bacteroides stercoris


organism_name: Anaerobutyricum soehngenii


organism_name: Sodaliphilus sp.


organism_name: Sutterella wadsworthensis


organism_name: Eubacteriales bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Prevotella sp.


organism_name: Eubacterium sp.


organism_name: Dialister sp.


organism_name: Collinsella sp.


organism_name: Bacteroidaceae bacterium


organism_name: Listeria monocytogenes


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Bacilli bacterium


organism_name: Candidatus Egerieousia sp.


organism_name: Porcincola intestinalis


organism_name: Candidatus Enterosoma sp.


organism_name: Campylobacter sp.


organism_name: Atopobiaceae bacterium


organism_name: Tractidigestivibacter sp.


organism_name: Arcanobacterium sp.


organism_name: Sharpea porci


organism_name: Streptococcus sp.


organism_name: Eubacteriales bacterium


organism_name: Escherichia coli


organism_name: Erysipelotrichaceae bacterium


organism_name: Veillonella caviae


organism_name: Ligilactobacillus salivarius


organism_name: Lentihominibacter sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Fusobacterium gastrosuis


organism_name: Sodaliphilus sp.


organism_name: Prevotella sp.


organism_name: Listeria monocytogenes


organism_name: Candidatus Alloenteromonas sp.


organism_name: Gemmiger sp.


organism_name: Succinivibrio sp.


organism_name: Porcincola intestinalis


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Enterosoma sp.


organism_name: Bacteroidaceae bacterium


organism_name: Vescimonas sp.


organism_name: Collinsella sp.


organism_name: Candidatus Egerieousia sp.


organism_name: Enterococcus hirae


organism_name: Bacilli bacterium


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Candidatus Ventricola sp.


organism_name: Acinetobacter baumannii


organism_name: Megasphaera elsdenii


organism_name: Anaerovibrio sp.


organism_name: Campylobacter sp.


organism_name: Salmonella enterica


organism_name: Bifidobacterium sp.


organism_name: Listeria monocytogenes


organism_name: Sodaliphilus sp.


organism_name: Eubacterium coprostanoligenes


organism_name: Intestinimonas sp.


organism_name: Faecousia sp.


organism_name: Bacteroides pyogenes


organism_name: Lactobacillus johnsonii


organism_name: Mitsuokella jalaludinii


organism_name: Eubacteriales bacterium


organism_name: Dialister sp.


organism_name: Prevotella sp.


organism_name: Escherichia coli


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Muribaculaceae bacterium


organism_name: Cloacibacillus porcorum


organism_name: Eggerthellaceae bacterium


organism_name: Collinsella sp.


organism_name: Erysipelotrichaceae bacterium


organism_name: Sodaliphilus sp.


organism_name: Alistipes sp.


organism_name: Trueperella sp.


organism_name: Akkermansia muciniphila


organism_name: Gemmiger sp.


organism_name: Lactobacillus johnsonii


organism_name: Desulfovibrio sp.


organism_name: Parabacteroides merdae


organism_name: Hornefia butyriciproducens


organism_name: Eubacterium coprostanoligenes


organism_name: Bacteroides pyogenes


organism_name: Anaerotignum sp.


organism_name: Actinobacillus porcinus


organism_name: Peptostreptococcus porci


organism_name: Limosilactobacillus mucosae


organism_name: Listeria monocytogenes


organism_name: Veillonella caviae


organism_name: Candidatus Enterosoma sp.


organism_name: Sodaliphilus sp.


organism_name: Agathobacter sp.


organism_name: Bacilli bacterium


organism_name: Candidatus Alloenteromonas sp.


organism_name: Alloprevotella sp.


organism_name: Bariatricus sp.


organism_name: Treponema porcinum


organism_name: Eubacteriales bacterium


organism_name: Collinsella sp.


organism_name: Prevotella sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Clostridia bacterium


organism_name: Hornefia butyriciproducens


organism_name: Lactobacillus amylovorus


organism_name: Listeria monocytogenes


organism_name: Peptostreptococcus porci


organism_name: Butyricimonas virosa


organism_name: Veillonella caviae


organism_name: Holdemanella porci


organism_name: Enterocloster clostridioformis


organism_name: Anaerobutyricum sp.


organism_name: Campylobacter sp.


organism_name: Desulfovibrio sp.


organism_name: Clostridium sp.


organism_name: Megasphaera elsdenii


organism_name: Sphaerochaetaceae bacterium


organism_name: Prevotella sp.


organism_name: Candidatus Ventricola sp.


organism_name: Pumilibacteraceae bacterium


organism_name: Eubacteriales bacterium


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Candidatus Ornithospirochaeta sp.


organism_name: Faecalibacterium sp.


organism_name: Sodaliphilus sp.


organism_name: Agathobacter sp.


organism_name: Lachnospiraceae bacterium


organism_name: Butyricimonas virosa


organism_name: Dysosmobacter sp.


organism_name: Eisenbergiella porci


organism_name: Schaalia hyovaginalis


organism_name: Gemmiger sp.


organism_name: Campylobacter lanienae


organism_name: Candidatus Enterosoma sp.


organism_name: Bacteroidaceae bacterium


organism_name: Prevotella sp.


organism_name: Helicobacter sp.


organism_name: Dialister sp.


organism_name: Collinsella sp.


organism_name: Blautia sp.


organism_name: Faecalibacterium longum


organism_name: Candidatus Heritagella sp.


organism_name: Sodaliphilus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Listeria monocytogenes


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Porcincola intestinalis


organism_name: Candidatus Limivicinus sp.


organism_name: Candidatus Merdousia sp.


organism_name: Gemmiger sp.


organism_name: Eubacteriales bacterium


organism_name: Lactobacillus johnsonii


organism_name: Lentihominibacter sp.


organism_name: Escherichia coli


organism_name: Bacteroidaceae bacterium


organism_name: Arcanobacterium sp.


organism_name: Streptococcus orisratti


organism_name: Candidatus Fimivicinus sp.


organism_name: Lactobacillus delbrueckii


organism_name: Limosilactobacillus reuteri


organism_name: Oscillospiraceae bacterium


organism_name: Limosilactobacillus coleohominis


organism_name: Lachnospiraceae bacterium


organism_name: Helicobacter sp.


organism_name: Schaalia hyovaginalis


organism_name: Parabacteroides sp.


organism_name: Dysosmobacter sp.


organism_name: Kiritimatiellia bacterium


organism_name: Methanobrevibacter boviskoreani


organism_name: Bacteroidales bacterium


organism_name: Sodaliphilus sp.


organism_name: Treponema porcinum


organism_name: Eubacteriales bacterium


organism_name: Clostridia bacterium


organism_name: Blautia sp.


organism_name: Gemmiger qucibialis


organism_name: Prevotella sp.


organism_name: Alloprevotella sp.


organism_name: Coriobacteriales bacterium


organism_name: Treponema sp.


organism_name: Faecousia sp.


organism_name: Candidatus Onthovivens sp.


organism_name: Paludibacteraceae bacterium


organism_name: Bacilli bacterium


organism_name: Candidatus Enterosoma sp.


organism_name: Bacteroidaceae bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: Fusobacterium gastrosuis


organism_name: Campylobacter coli


organism_name: Eubacteriales bacterium


organism_name: Succinivibrio sp.


organism_name: Victivallales bacterium


organism_name: Sodaliphilus sp.


organism_name: Candidatus Onthomorpha sp.


organism_name: Listeria monocytogenes


organism_name: Lachnospiraceae bacterium


organism_name: Fibrobacter sp.


organism_name: Selenomonas sp.


organism_name: Ruminococcus flavefaciens


organism_name: Oscillospiraceae bacterium


organism_name: Elusimicrobiaceae bacterium


organism_name: Veillonella caviae


organism_name: Anaerovoracaceae bacterium


organism_name: Bullifex sp.


organism_name: Mobiluncus porci


organism_name: Bacilli bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Alloprevotella sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Eubacteriales bacterium


organism_name: Treponema sp.


organism_name: Peptoniphilaceae bacterium


organism_name: Succinivibrio sp.


organism_name: Escherichia coli


organism_name: Lachnospiraceae bacterium


organism_name: [Actinobacillus] rossii


organism_name: Corynebacterium sp.


organism_name: Helicobacter sp.


organism_name: Succinivibrionaceae bacterium


organism_name: Gemmiger sp.


organism_name: Lachnospira sp.


organism_name: Coriobacteriales bacterium


organism_name: Candidatus Coprenecus sp.


organism_name: Bacteroides sp.


organism_name: Fusobacterium gastrosuis


organism_name: Veillonella caviae


organism_name: Porphyromonas somerae


organism_name: Treponema sp.


organism_name: Eubacteriales bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Sodaliphilus sp.