isolate: WGS of M10574


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: National Center for Biotechnology Information

assembly_level: Contig

assembly_type: haploid

excluded_from_refseq: from large multi-isolate project

genome_rep: Full

group: bacteria

isolate: WGS of M10605

organism_name: Neisseria meningitidis

release_type: Major

version_status: latest


asm_submitter: Helmholtz Centre for Infection Research

excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Porcipelethomonas sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: bacterium


excluded_from_refseq: derived from metagenome

organism_name: Parabacteroides distasonis


isolate: WGS of M07193


organism_name: Parasutterella sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Anaerostipes hadrus


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Waltera sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Alistipes onderdonkii


organism_name: Enorma massiliensis


organism_name: Bacteroides stercoris


organism_name: Allocoprococcus comes


organism_name: Faecalibacterium prausnitzii


organism_name: Anaerotignum faecicola


organism_name: Hominilimicola sp.


organism_name: Phocaeicola vulgatus


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined


organism_name: Fusicatenibacter saccharivorans


organism_name: Lachnospira sp.


organism_name: Agathobacter rectalis


organism_name: Parabacteroides johnsonii


organism_name: Angelakisella sp.


organism_name: bacterium


organism_name: Lachnospiraceae bacterium


organism_name: [Eubacterium] siraeum


organism_name: Prevotella sp.


organism_name: Faecalibacillus faecis


organism_name: Collinsella sp.


isolate: WGS of M10698

organism_name: Neisseria meningitidis


isolate: WGS of M10576


isolate: WGS of M10661


organism_name: Phascolarctobacterium faecium

paired_asm_comp: identical


isolate: WGS of M10591


asm_submitter: CDC

organism_name: Shigella flexneri


organism_name: Faecalibacterium sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes shahii


organism_name: Shigella sonnei


organism_name: Alistipes ihumii


organism_name: Salmonella enterica


organism_name: Bacteroides caccae


organism_name: Escherichia coli


organism_name: Dorea longicatena


isolate: WGS of M10710


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Eubacterium sp.


isolate: WGS of M10713


isolate: WGS of M10706


isolate: WGS of M10790


asm_submitter: The University of Texas Health Sciences Center

assembly_level: Complete Genome

organism_name: Klebsiella pneumoniae


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Alistipes communis


isolate: WGS of M06727


organism_name: Gemmiger formicilis


isolate: WGS of M11288

organism_name: Neisseria meningitidis


isolate: WGS of M07268


organism_name: Alistipes onderdonkii


isolate: WGS of M07245


organism_name: Lachnospira sp.


isolate: WGS of M11290


organism_name: bacterium


organism_name: Prevotellamassilia sp.


isolate: WGS of M11295


isolate: WGS of M11586


organism_name: Prevotella sp.


organism_name: Prevotella pectinovora


isolate: WGS of M11564


isolate: WGS of M11689


isolate: WGS of M11587


isolate: WGS of M11646


isolate: WGS of M11690


isolate: WGS of M07273


isolate: WGS of M11694


isolate: WGS of M11705


isolate: WGS of M11719


isolate: WGS of M11790


isolate: WGS of M14296


isolate: WGS of M11822


isolate: WGS of M14302


isolate: WGS of M07439


isolate: WGS of M14376


isolate: WGS of M14379


isolate: WGS of M14385


isolate: WGS of M14401


isolate: WGS of M14437


isolate: WGS of M14459


isolate: WGS of M14452


organism_name: Shigella sonnei


isolate: WGS of M14536


isolate: WGS of M14530


isolate: WGS of M18303


isolate: WGS of M18200


isolate: WGS of M07449


isolate: WGS of M18205


organism_name: Salmonella enterica


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Eko


isolate: WGS of M18338


organism_name: Escherichia coli


organism_name: Shigella flexneri


organism_name: Salmonella enterica subsp. enterica serovar Derby


isolate: WGS of M14532


isolate: WGS of M14547


isolate: WGS of M18070


isolate: WGS of M07574


isolate: WGS of M18133


isolate: WGS of M18339


isolate: WGS of M18201


isolate: WGS of M18347


isolate: WGS of M18356


isolate: WGS of M18405


isolate: WGS of M18467


isolate: WGS of M18483


isolate: WGS of M08994


isolate: WGS of M07620


isolate: WGS of M09044


isolate: WGS of M09004


isolate: WGS of M09051


isolate: WGS of M09053


isolate: WGS of M09052


isolate: WGS of M07042


isolate: WGS of M09054


isolate: WGS of M09055


isolate: WGS of M09057


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


organism_name: Klebsiella pneumoniae


organism_name: Campylobacter coli


isolate: WGS of M18374


asm_submitter: Hunan Agricultural University, Changsha, Hunan, China

assembly_level: Scaffold


asm_submitter: Eberhard Karls Universitaet Tuebingen

organism_name: Bacillus cereus


release_type: Minor


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Cerro


asm_submitter: FDA Center for Food Safety and Applied Nutrition


organism_name: Salmonella enterica subsp. diarizonae


asm_submitter: msa univeristy

organism_name: Lacticaseibacillus paracasei


isolate: WGS of M09992

organism_name: Neisseria meningitidis


organism_name: Lacticaseibacillus sp. NRC_P2


isolate: WGS of M09997


asm_submitter: AMPLIFY consortium

organism_name: Pediococcus acidilactici


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Latilactobacillus sakei


isolate: WGS of M09973


organism_name: Lactiplantibacillus paraplantarum


organism_name: Lactiplantibacillus plantarum


organism_name: Enterococcus faecium


isolate: WGS of M09110


isolate: WGS of M09151


asm_submitter: Ocean University of China

organism_name: Candidatus Sedimenticola sp. (ex Thyasira tokunagai)


isolate: WGS of M09152


isolate: WGS of M09150


isolate: WGS of M09154


isolate: WGS of M09932


isolate: WGS of M09155


isolate: WGS of M09930


isolate: WGS of M09960


isolate: WGS of M07180


isolate: WGS of M10015


organism_name: Salmonella enterica


organism_name: Escherichia coli


isolate: WGS of M10101


isolate: WGS of M10136


isolate: WGS of M07182


isolate: WGS of M10104


isolate: WGS of M10135


isolate: WGS of M10182


isolate: WGS of M10186


isolate: WGS of M10282


isolate: WGS of M12886


isolate: WGS of M12885


isolate: WGS of M12691


isolate: WGS of M12727


isolate: WGS of M12923


isolate: WGS of M12898


isolate: WGS of M13006


isolate: WGS of M13032


isolate: WGS of M07356


isolate: WGS of M13084


isolate: WGS of M13176


isolate: WGS of M13085


isolate: WGS of M13252


isolate: WGS of M13202


isolate: WGS of M13203


asm_submitter: US Food and Drug Administration


asm_submitter: ICAR Research Complex for NEH Region

organism_name: Escherichia albertii


organism_name: Pseudomonas aeruginosa


asm_submitter: University of Tehran

infraspecific_name: strain=CFBP 9080

organism_name: Clavibacter michiganensis


infraspecific_name: strain=CFBP 9078


infraspecific_name: strain=CFBP 9079


annotation_name: Annotation submitted by OneHealth Consortium

annotation_provider: OneHealth Consortium

asm_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern

organism_name: Microbacterium sp. KHB019


asm_submitter: Nanjing Agricultural University

organism_name: Mycoplasmopsis synoviae


asm_submitter: Guangdong Women and Children Hospital

organism_name: Corynebacterium pseudokroppenstedtii


asm_submitter: Northwest A&F University

organism_name: Paenarthrobacter sp. CCNWYY172


asm_submitter: Christian Medical College

organism_name: Klebsiella pneumoniae


excluded_from_refseq: annotation fails completeness check


asm_submitter: Yunnan Institute of Microbiology

infraspecific_name: strain=YIM B09111


asm_submitter: Rudjer Boskovic Institute


asm_submitter: Monash University Malaysia

excluded_from_refseq: fragmented assembly

infraspecific_name: strain=NIES 2111

organism_name: Nostoc sp. NIES-2111


asm_submitter: Hunan Agricultural University, Changsha, Hunan, China


asm_submitter: National Center for Biotechnology Information

isolate: WGS of M14572

organism_name: Neisseria meningitidis


isolate: WGS of M13262


isolate: WGS of M14569


isolate: WGS of M14549


isolate: WGS of M14548


isolate: WGS of M14594


isolate: WGS of M14828


isolate: WGS of M14613


isolate: WGS of M14724


isolate: WGS of M14848


isolate: WGS of M14815


isolate: WGS of M07450


isolate: WGS of M14882


isolate: WGS of M14880


isolate: WGS of M14879


isolate: WGS of M14881


isolate: WGS of M14933


isolate: WGS of M07463


isolate: WGS of M15534


isolate: WGS of M15563


asm_submitter: The University of Texas Health Sciences Center


asm_submitter: Institute of Microbiology,Guangdong Academy of Sciences

organism_name: Prescottella sp. D32


asm_submitter: Central Marine Fisheries Research Institute

organism_name: Bacillus velezensis


asm_submitter: Univeristy of Pretoria and National Health Laboratory Services


organism_name: Serratia marcescens


organism_name: Klebsiella quasipneumoniae


organism_name: Klebsiella variicola


asm_submitter: Health Protection Agency

organism_name: Listeria monocytogenes


asm_submitter: CDC

organism_name: Shigella flexneri


organism_name: Escherichia coli


organism_name: Shigella sonnei


organism_name: Shigella boydii


organism_name: Salmonella enterica


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


asm_submitter: FDA

organism_name: Campylobacter coli


asm_submitter: Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences

organism_name: Lactiplantibacillus argentoratensis

refseq_category: reference genome


isolate: WGS of M15508


isolate: WGS of M15564


isolate: WGS of M15873


isolate: WGS of M15668


isolate: WGS of M15876


isolate: WGS of M15875


isolate: WGS of M15943


isolate: WGS of M15946


isolate: WGS of M07490


isolate: WGS of M15957


isolate: WGS of M15947


isolate: WGS of M17502


isolate: WGS of M15963


isolate: WGS of M15999


isolate: WGS of M17606


isolate: WGS of M17503


isolate: WGS of M17632


isolate: WGS of M17631


isolate: WGS of M17841


isolate: WGS of M17687


isolate: WGS of M17844


isolate: WGS of M07541


isolate: WGS of M17911


isolate: Neisseriameningitidis


asm_submitter: Yangzhou University

infraspecific_name: strain=CCTCC M20191004

organism_name: Acinetobacter lwoffii


asm_submitter: RMIT UNIVERSITY

assembly_level: Chromosome

organism_name: Campylobacter concisus


asm_submitter: Helmholtz Centre for Infection Research

organism_name: bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Neisseria meningitidis


organism_name: Duodenibacillus sp.


organism_name: Leyella stercorea


organism_name: Sodaliphilus sp.


organism_name: Prevotella sp.


organism_name: Collinsella sp.


organism_name: Campylobacter sp.


organism_name: Desulfovibrio sp.


organism_name: Succinivibrio sp.


organism_name: Acidaminococcus timonensis


organism_name: Prevotellamassilia sp.


organism_name: Bifidobacterium adolescentis


organism_name: Dialister sp.


organism_name: Bacteroides sp.


organism_name: Parabacteroides distasonis


group: archaea

organism_name: Methanobrevibacter smithii


organism_name: bacterium


organism_name: Alistipes senegalensis


organism_name: Neisseria meningitidis


organism_name: [Eubacterium] siraeum


organism_name: Faecalibacterium prausnitzii


organism_name: Butyrivibrio sp.


organism_name: Prevotella sp.


organism_name: Alistipes shahii


organism_name: Faecalibacterium sp.


organism_name: Sutterella wadsworthensis


organism_name: Phocaeicola vulgatus


organism_name: Segatella sp.


organism_name: Mediterraneibacter gnavus


organism_name: Enterocloster sp.


organism_name: Dorea longicatena


organism_name: Roseburia intestinalis


organism_name: Bacteroides uniformis


organism_name: Agathobacter rectalis


organism_name: Gemmiger formicilis


organism_name: bacterium


organism_name: Phocaeicola sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Paraprevotella clara


organism_name: Prevotellamassilia sp.


organism_name: Dialister sp.


organism_name: Parabacteroides distasonis


organism_name: Phocaeicola dorei


organism_name: Phascolarctobacterium faecium


organism_name: Duodenibacillus sp.


organism_name: Phocaeicola vulgatus


organism_name: Enterobacter hormaechei


organism_name: Sutterella wadsworthensis


organism_name: Merdibacter sp.


organism_name: Bifidobacterium bifidum


organism_name: Mediterraneibacter faecis


organism_name: Bifidobacterium longum


organism_name: Neisseria meningitidis


organism_name: Shigella sonnei


organism_name: bacterium


organism_name: Bilophila wadsworthia


organism_name: Negativibacillus sp.


organism_name: Klebsiella pneumoniae


organism_name: Flavonifractor sp.


organism_name: Eubacteriales bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Gemmiger formicilis


organism_name: Alistipes indistinctus


organism_name: Alistipes putredinis


organism_name: Merdimonas faecis


organism_name: Sutterella wadsworthensis


organism_name: Alistipes communis


organism_name: Bifidobacterium adolescentis


organism_name: Dialister invisus


organism_name: Neisseria meningitidis


organism_name: Segatella sp.


organism_name: Lachnospiraceae bacterium


organism_name: Gemmiger qucibialis


organism_name: bacterium


organism_name: Barnesiella intestinihominis


organism_name: Eubacterium sp.


organism_name: Paraprevotella clara


organism_name: Ruminococcus sp.


organism_name: Alistipes dispar


organism_name: Candidatus Borkfalkia ceftriaxoniphila


organism_name: Faecalibacterium prausnitzii


organism_name: Gemmiger formicilis


organism_name: Odoribacter splanchnicus


organism_name: Escherichia coli


organism_name: Shigella flexneri


organism_name: Listeria monocytogenes


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Sutterella wadsworthensis


organism_name: Prevotella sp.


organism_name: Neisseria meningitidis


organism_name: Bacteroides ovatus


organism_name: Roseburia sp.


organism_name: bacterium


asm_submitter: Ankara Bilkent Sehir Hospital

infraspecific_name: strain=strain S119

organism_name: Streptococcus pyogenes


organism_name: Alistipes inops


organism_name: Parabacteroides johnsonii


organism_name: [Eubacterium] siraeum


organism_name: Agathobacter rectalis


organism_name: Phocaeicola coprophilus


organism_name: Collinsella sp.


organism_name: Parabacteroides distasonis


organism_name: Bifidobacterium adolescentis


organism_name: Lachnospira sp.


organism_name: Lachnospiraceae bacterium


organism_name: Alistipes sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Dorea longicatena


organism_name: Oscillospiraceae bacterium


organism_name: Roseburia sp.


organism_name: Phocaeicola sp.


organism_name: Eubacteriales bacterium


organism_name: Jutongia sp.


organism_name: Dysosmobacter sp.


organism_name: Segatella sp.


organism_name: bacterium


excluded_from_refseq: contaminated; derived from metagenome; genome length too small

organism_name: Ruminococcus bromii


organism_name: Barnesiella intestinihominis


organism_name: Roseburia intestinalis


organism_name: Holdemanella biformis


organism_name: Segatella copri


organism_name: Phocaeicola vulgatus


organism_name: Roseburia inulinivorans


organism_name: Coprococcus sp.


organism_name: Mediterraneibacter torques


organism_name: Ruminococcus sp.


organism_name: Gemmiger sp.


organism_name: Gemmiger qucibialis


organism_name: Dialister invisus


organism_name: Bacteroides uniformis


organism_name: Alistipes sp.


organism_name: Alistipes indistinctus


organism_name: Neisseria meningitidis


organism_name: bacterium


organism_name: Allocoprococcus comes


organism_name: Gemmiger formicilis


organism_name: Faecalibacterium sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Prevotella sp.


organism_name: Vescimonas sp.


organism_name: [Lactobacillus] rogosae


organism_name: Roseburia faecis


organism_name: [Eubacterium] siraeum


organism_name: Segatella copri


organism_name: Parabacteroides distasonis


organism_name: Faecalibacterium prausnitzii


organism_name: Prevotellaceae bacterium


organism_name: Coprococcus sp.


asm_submitter: Anhui Academy of Agricultural Sciences

organism_name: Massilia sp. W12


organism_name: Escherichia coli


organism_name: Megasphaera sp.


organism_name: Dialister sp.


organism_name: Dysosmobacter welbionis


organism_name: Neisseria meningitidis


organism_name: bacterium


organism_name: Enterocloster bolteae


organism_name: Barnesiella intestinihominis


organism_name: Bacteroides caccae


organism_name: Parabacteroides merdae


organism_name: Bacteroides stercoris


organism_name: Methanobrevibacter smithii


organism_name: Mediterraneibacter torques


organism_name: Succinivibrio sp.


organism_name: Prevotella sp.


organism_name: Lachnospiraceae bacterium


organism_name: Roseburia faecis


organism_name: Allocoprococcus comes


organism_name: Bifidobacterium adolescentis


organism_name: Bacteroides ovatus


organism_name: Segatella sp.


organism_name: Acidaminococcus timonensis


organism_name: Dialister sp.


organism_name: bacterium


organism_name: Vescimonas sp.


organism_name: Roseburia sp.


organism_name: Oribacterium sp.


organism_name: Butyrivibrio sp.


organism_name: Faecalibacterium sp.


organism_name: Prevotellamassilia timonensis


organism_name: Anaerovibrio sp.


organism_name: Lachnospira eligens


organism_name: Porcipelethomonas sp.


organism_name: Angelakisella sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Neisseria meningitidis


organism_name: Roseburia inulinivorans


organism_name: Catenibacterium sp.


organism_name: Mitsuokella jalaludinii


organism_name: Prevotella sp.


organism_name: [Eubacterium] siraeum


organism_name: bacterium


organism_name: Dorea longicatena


organism_name: Succinivibrio sp.


organism_name: Prevotella pectinovora


organism_name: Segatella sp.


organism_name: Enterocloster sp.


organism_name: Campylobacter sp.


organism_name: Prevotellamassilia sp.


organism_name: Duodenibacillus sp.


organism_name: [Lactobacillus] rogosae


organism_name: Acidaminococcus fermentans


organism_name: Neisseria meningitidis


organism_name: Brachyspira aalborgi


organism_name: Megasphaera sp.


organism_name: Fusobacterium mortiferum


organism_name: Clostridium sp.


organism_name: Prevotella sp.


organism_name: Segatella hominis


organism_name: Acidaminococcus intestini


organism_name: bacterium


organism_name: Dialister histaminiformans


organism_name: Mitsuokella jalaludinii


organism_name: Segatella sp.


organism_name: Bacteroides uniformis


organism_name: Faecalibacterium sp.


organism_name: Phocaeicola dorei


organism_name: Dialister sp.


organism_name: Desulfovibrio sp.


organism_name: Prevotellamassilia timonensis


organism_name: Roseburia inulinivorans


organism_name: Lachnospiraceae bacterium


organism_name: Anaerovibrio sp.


organism_name: Selenomonas sp.


organism_name: Dysosmobacter sp.


organism_name: Fusobacterium mortiferum


organism_name: Prevotella sp.


organism_name: Gemmiger formicilis


organism_name: Bilophila wadsworthia


organism_name: Neisseria meningitidis


organism_name: Megasphaera sp.


organism_name: Enterocloster sp.


organism_name: Succinivibrio sp.


organism_name: Duodenibacillus sp.


organism_name: Segatella copri


organism_name: Sutterella wadsworthensis


organism_name: Dysosmobacter welbionis


organism_name: Hallella sp.


organism_name: Oribacterium sp.


organism_name: [Lactobacillus] rogosae


organism_name: bacterium


organism_name: Prevotella pectinovora


organism_name: Acidaminococcus timonensis


organism_name: [Eubacterium] siraeum


organism_name: Prevotella sp.


organism_name: Lachnospiraceae bacterium


organism_name: Brachyspira pilosicoli


organism_name: Faecalibacterium sp.


organism_name: Neisseria meningitidis


organism_name: Prevotellamassilia sp.


organism_name: Roseburia inulinivorans


organism_name: Dialister sp.


organism_name: Roseburia sp.


organism_name: Mitsuokella jalaludinii


organism_name: Segatella copri


organism_name: Bifidobacterium sp.


organism_name: Escherichia coli


organism_name: Gemmiger sp.


organism_name: Campylobacter sp.


organism_name: bacterium


organism_name: Dysosmobacter sp.


asm_submitter: Banfield Lab at UC Berkeley

organism_name: Candidatus Freyarchaeum deiterrae


organism_name: archaeon


organism_name: Duodenibacillus massiliensis


organism_name: Slackia isoflavoniconvertens


organism_name: Gemmiger qucibialis


organism_name: Holdemanella sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Prevotella sp.


organism_name: Parabacteroides sp.


organism_name: Angelakisella sp.


organism_name: Oribacterium sp.


organism_name: Prevotella pectinovora


asm_submitter: National Center for Biotechnology Information

organism_name: Neisseria meningitidis


organism_name: [Eubacterium] siraeum


organism_name: Dialister sp.


organism_name: Shigella flexneri


organism_name: bacterium


organism_name: Gemmiger formicilis


organism_name: Catenibacterium mitsuokai


organism_name: Allocoprococcus comes


organism_name: Oscillospiraceae bacterium


organism_name: Prevotellamassilia sp.


organism_name: Methanobrevibacter smithii


organism_name: Lachnospiraceae bacterium


organism_name: Prevotella sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small; genus undefined

organism_name: [Clostridium] leptum


organism_name: Mediterraneibacter faecis


organism_name: Collinsella sp.


organism_name: Bifidobacterium adolescentis


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Ruminococcus bromii


organism_name: Anaerovibrio sp.


organism_name: Oribacterium sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Gemmiger qucibialis


organism_name: bacterium


organism_name: Ruminiclostridium sp.


organism_name: Dysosmobacter sp.


organism_name: Mitsuokella jalaludinii


excluded_from_refseq: from large multi-isolate project

organism_name: Neisseria meningitidis


organism_name: Oscillospiraceae bacterium


organism_name: Prevotellamassilia timonensis


organism_name: Shigella sonnei


organism_name: Duodenibacillus sp.


organism_name: Jutongia sp.


organism_name: Ruminococcus sp.


organism_name: Brachyspira aalborgi


organism_name: Angelakisella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Gallintestinimicrobium sp.


organism_name: Agathobacter rectalis


organism_name: Lachnospiraceae bacterium


organism_name: archaeon


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Faecalibacterium sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: bacterium


organism_name: Desulfovibrio sp.


organism_name: Neisseria meningitidis


organism_name: Butyrivibrio sp.


excluded_from_refseq: derived from metagenome

organism_name: Prevotella sp.


organism_name: Coprococcus sp.


organism_name: Candidatus Atabeyarchaeum deiterrae


organism_name: Succinivibrio sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Paraprevotella clara


organism_name: Segatella sp.


organism_name: Allocoprococcus comes


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Absicoccus sp.


organism_name: Alistipes shahii


organism_name: Megasphaera sp.


organism_name: Prevotella pectinovora


organism_name: Lachnospiraceae bacterium


organism_name: Phascolarctobacterium succinatutens


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Agathobacter rectalis


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: bacterium


organism_name: Prevotellamassilia timonensis


organism_name: Roseburia sp.


organism_name: Prevotella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Eshraghiella crossota


organism_name: Coprococcus sp.


organism_name: Mitsuokella jalaludinii


organism_name: Sutterella wadsworthensis


organism_name: Streptococcus thermophilus


organism_name: Roseburia intestinalis


organism_name: Veillonella dispar


organism_name: Dialister sp.


organism_name: Oribacterium sp.


organism_name: Anaerotignum faecicola


organism_name: Phocaeicola sp.


organism_name: Segatella copri


organism_name: Succinivibrio sp.


organism_name: Dysosmobacter sp.


organism_name: bacterium


organism_name: Prevotella sp.


organism_name: Angelakisella sp.


organism_name: Anaerovibrio sp.


organism_name: Segatella sp.


organism_name: [Eubacterium] siraeum


organism_name: Duodenibacillus sp.


organism_name: Allocoprococcus comes


organism_name: Bifidobacterium adolescentis


organism_name: Roseburia sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Segatella hominis


organism_name: Eubacterium sp.


organism_name: Vescimonas sp.


organism_name: Slackia isoflavoniconvertens


organism_name: Dialister sp.


organism_name: Faecalibacterium sp.


organism_name: Lachnospiraceae bacterium


organism_name: Roseburia faecis


organism_name: Ruminococcus sp.


organism_name: Mitsuokella jalaludinii


organism_name: bacterium


organism_name: Clostridium sp.


organism_name: Prevotella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Oribacterium sp.


organism_name: Dysosmobacter sp.


organism_name: Coriobacteriaceae bacterium


organism_name: Neisseria meningitidis


organism_name: Phascolarctobacterium succinatutens


organism_name: Gemmiger formicilis


organism_name: Segatella sp.


organism_name: Prevotellamassilia sp.


organism_name: Brachyspira aalborgi


organism_name: Zhenhengia sp.


organism_name: Sodaliphilus sp.


organism_name: Acidaminococcus timonensis


organism_name: Angelakisella sp.


organism_name: Lachnospira sp.


organism_name: bacterium


organism_name: Alistipes shahii


organism_name: Waltera sp.


organism_name: Prevotella sp.


organism_name: Dialister sp.


organism_name: Bulleidia sp.


organism_name: Lachnospira eligens


organism_name: Succinivibrio sp.


organism_name: Faecalibacterium sp.


organism_name: Desulfovibrio sp.


organism_name: Clostridium saudiense


organism_name: Segatella copri


organism_name: Megasphaera sp.


organism_name: [Eubacterium] siraeum


organism_name: Mitsuokella jalaludinii


organism_name: Agathobacter sp.


organism_name: Agathobacter rectalis


organism_name: bacterium


organism_name: Catenibacterium sp.


organism_name: Coprococcus sp.


organism_name: Angelakisella sp.


organism_name: Dialister sp.


organism_name: Prevotella sp.


organism_name: Eubacteriales bacterium


asm_submitter: Aarhus University

organism_name: Acidovorax temperans


organism_name: Bifidobacterium catenulatum


organism_name: Escherichia coli


organism_name: Neisseria meningitidis


organism_name: Faecalibacterium prausnitzii


organism_name: Bifidobacterium adolescentis


organism_name: Succinivibrio sp.


organism_name: Faecalibacterium sp.


organism_name: Holdemanella biformis


organism_name: Ruminococcus callidus


organism_name: Prevotella pectinovora


organism_name: bacterium


organism_name: Megasphaera sp.


organism_name: Dorea longicatena


organism_name: Prevotellamassilia sp.


organism_name: Mitsuokella jalaludinii


organism_name: Gemmiger formicilis


organism_name: Prevotella sp.


organism_name: Allocoprococcus comes


organism_name: Agathobacter rectalis


organism_name: Neisseria meningitidis


organism_name: Segatella sp.


organism_name: Brachyspira aalborgi


organism_name: Bifidobacterium longum


organism_name: Roseburia sp.


organism_name: Bifidobacterium adolescentis


organism_name: Oscillospiraceae bacterium


organism_name: Dysosmobacter welbionis


organism_name: bacterium


organism_name: Mediterraneibacter torques


organism_name: Succinivibrio sp.


organism_name: archaeon


organism_name: Desulfovibrio sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Gemmiger formicilis


organism_name: Bacteroides fragilis


organism_name: Parabacteroides distasonis


organism_name: Acidaminococcus fermentans


organism_name: Dialister sp.


organism_name: Prevotellamassilia sp.


organism_name: [Eubacterium] siraeum


organism_name: Prevotella sp.


organism_name: Neisseria meningitidis


organism_name: Olsenella sp.


asm_submitter: Ocean University of China

organism_name: Candidatus Sedimenticola sp. (ex Thyasira tokunagai)


organism_name: bacterium


organism_name: Eubacteriales bacterium


organism_name: Duodenibacillus sp.


organism_name: Alistipes onderdonkii


organism_name: Acidaminococcus intestini


organism_name: Roseburia faecis


organism_name: Bacteroides cellulosilyticus


organism_name: Phocaeicola massiliensis


organism_name: Phascolarctobacterium faecium


organism_name: Phocaeicola vulgatus


organism_name: Clostridium sp.


organism_name: Dysosmobacter welbionis


organism_name: Alistipes finegoldii


organism_name: Odoribacter splanchnicus


organism_name: Alistipes putredinis


organism_name: Neisseria meningitidis


organism_name: Bacteroides sp.


organism_name: Enterocloster sp.


organism_name: bacterium


organism_name: Faecalibacterium sp.


organism_name: Barnesiella intestinihominis


organism_name: Bacteroides uniformis


organism_name: Bacteroides ovatus


organism_name: Lachnospiraceae bacterium


organism_name: Alistipes onderdonkii


organism_name: Coprococcus sp.


organism_name: Eshraghiella crossota


organism_name: Dysosmobacter sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Gemmiger qucibialis


organism_name: Mitsuokella jalaludinii


organism_name: Duodenibacillus sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Gemmiger sp.


organism_name: Gemmiger formicilis


organism_name: Dysosmobacter welbionis


organism_name: Prevotella sp.


organism_name: bacterium


organism_name: Parabacteroides distasonis


organism_name: Angelakisella sp.


organism_name: Desulfovibrio sp.


organism_name: Acidaminococcus timonensis


organism_name: Ruminococcus sp.


organism_name: Neisseria meningitidis


organism_name: Segatella copri


organism_name: Methanobrevibacter smithii


organism_name: Candidatus Sedimenticola sp. (ex Thyasira tokunagai)


organism_name: Succinivibrio sp.


organism_name: Campylobacter sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Dialister sp.


organism_name: Prevotellamassilia sp.


organism_name: Faecalibacterium sp.


organism_name: Agathobacter rectalis


organism_name: Coprococcus sp.


organism_name: Parabacteroides merdae


organism_name: Bacteroides uniformis


organism_name: Enterocloster sp.


organism_name: Roseburia faecis


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome

organism_name: Butyricicoccus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Gemmiger sp.


organism_name: Neisseria meningitidis


organism_name: Phocaeicola plebeius


organism_name: Allocoprococcus comes


organism_name: Bacteroides ovatus


organism_name: Phocaeicola sp.


organism_name: Streptococcus parasanguinis


organism_name: Lachnospira sp.


organism_name: Phocaeicola vulgatus


organism_name: Roseburia hominis


organism_name: bacterium


organism_name: Roseburia inulinivorans


organism_name: Gemmiger qucibialis


organism_name: Ruminococcus bromii


organism_name: Sutterella wadsworthensis


organism_name: Bifidobacterium longum


organism_name: Agathobacter rectalis


organism_name: Clostridium sp.


organism_name: Parasutterella excrementihominis


organism_name: Neisseria meningitidis


organism_name: Fusicatenibacter saccharivorans


organism_name: Lachnospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Collinsella sp.


organism_name: Bacteroides stercoris


organism_name: Streptococcus salivarius


organism_name: Faecalibacterium sp.


organism_name: bacterium


organism_name: Segatella copri


organism_name: [Lactobacillus] rogosae


organism_name: Parabacteroides distasonis


organism_name: Prevotella sp.


organism_name: Desulfovibrio sp.


organism_name: Mitsuokella jalaludinii


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Campylobacter concisus


organism_name: Roseburia inulinivorans


organism_name: Dysosmobacter sp.


organism_name: Neisseria meningitidis


organism_name: Segatella sp.


organism_name: Ruminococcus sp.


organism_name: Megasphaera sp.


organism_name: Prevotellamassilia sp.


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome; fragmented assembly

organism_name: Butyricicoccus sp.


organism_name: Agathobacter rectalis


organism_name: Gemmiger qucibialis


organism_name: Sodaliphilus sp.


organism_name: bacterium


organism_name: Angelakisella sp.


organism_name: Clostridium sp.


organism_name: Allocoprococcus comes


organism_name: Roseburia faecis


organism_name: Phascolarctobacterium succinatutens


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Segatella hominis


organism_name: Gemmiger formicilis


organism_name: Neisseria meningitidis


organism_name: Faecalibacterium prausnitzii


organism_name: Dialister sp.


organism_name: Prevotella sp.


organism_name: Sutterella wadsworthensis


organism_name: Duodenibacillus sp.


organism_name: Bacteroides uniformis


organism_name: Paraprevotella clara


organism_name: Lawsonibacter sp.


organism_name: Phocaeicola vulgatus


organism_name: Enterocloster sp.


organism_name: Anaerotignum lactatifermentans


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroides ovatus


organism_name: Flavonifractor plautii


organism_name: Alistipes finegoldii


organism_name: Mediterraneibacter gnavus


organism_name: Acidaminococcus intestini


organism_name: Ruthenibacterium sp.


organism_name: Neisseria meningitidis


organism_name: Alistipes putredinis


organism_name: Enterobacter hormaechei


organism_name: Bifidobacterium longum


organism_name: Segatella sp.


organism_name: Coprococcus sp.


organism_name: Lachnospiraceae bacterium


organism_name: Alistipes shahii


organism_name: bacterium


organism_name: Odoribacter splanchnicus


asm_submitter: Shandong First Medical University

organism_name: Kurthia gibsonii


organism_name: Prevotella sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Holdemanella sp.


organism_name: Roseburia inulinivorans


organism_name: Faecalibacterium prausnitzii


organism_name: Phocaeicola vulgatus


organism_name: Mailhella sp.


organism_name: Neisseria meningitidis


organism_name: Agathobacter rectalis


organism_name: Clostridium sp.


organism_name: [Eubacterium] siraeum


organism_name: Prevotella pectinovora


organism_name: Bacteroidales bacterium


organism_name: Paraprevotella clara


organism_name: Faecalibacterium sp.


organism_name: Desulfovibrio sp.


organism_name: bacterium


organism_name: Bacteroides ovatus


organism_name: Roseburia sp.


organism_name: Prevotellamassilia timonensis


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Acetatifactor sp.


organism_name: archaeon


organism_name: Brachyspira aalborgi


organism_name: Gemmiger qucibialis


organism_name: Parabacteroides distasonis


organism_name: Prevotella sp.


organism_name: Mitsuokella jalaludinii


organism_name: Dysosmobacter welbionis


organism_name: Parabacteroides sp.


organism_name: Methanobrevibacter smithii


organism_name: Campylobacter sp.


organism_name: Neisseria meningitidis


organism_name: Parabacteroides merdae


organism_name: Eubacteriales bacterium


organism_name: bacterium


organism_name: Agathobacter rectalis


organism_name: Prevotellamassilia timonensis


organism_name: Faecalibacterium prausnitzii


organism_name: Faecalibacterium sp.


organism_name: Enterococcus faecium


organism_name: Vescimonas sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Paraprevotella clara


organism_name: Akkermansia muciniphila


organism_name: Fusicatenibacter saccharivorans


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Listeria monocytogenes


organism_name: Salmonella enterica


organism_name: Bacteroides faecis


organism_name: Escherichia coli


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Acetatifactor sp.


organism_name: bacterium


organism_name: Shigella sonnei


organism_name: Coprococcus sp.


organism_name: Ellagibacter isourolithinifaciens


isolate: WGS of M08386

organism_name: Neisseria meningitidis


organism_name: Oscillospiraceae bacterium


organism_name: Megasphaera sp.


isolate: WGS of M09785


isolate: WGS of M13957


organism_name: Prevotella sp.


organism_name: Mitsuokella jalaludinii


isolate: WGS of M14025


organism_name: Mediterraneibacter torques


organism_name: Phocaeicola vulgatus


organism_name: Gemmiger formicilis


organism_name: Collinsella aerofaciens


organism_name: Bacteroides fragilis


organism_name: Agathobacter rectalis


organism_name: Brachyspira aalborgi


organism_name: Faecalibacterium prausnitzii


organism_name: bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: Catenibacterium sp.


organism_name: Dialister sp.


organism_name: Neisseria meningitidis


organism_name: Bacteroides uniformis


organism_name: Parabacteroides distasonis


organism_name: Desulfovibrio sp.


asm_submitter: zhejiang university

organism_name: Rhodococcus sovatensis


organism_name: Holdemanella sp.


organism_name: Dysosmobacter welbionis


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly; genome length too small

organism_name: Ruminococcus bromii


organism_name: Dorea longicatena


organism_name: Angelakisella sp.


organism_name: Alistipes finegoldii


organism_name: Alistipes shahii


organism_name: Vescimonas sp.


organism_name: [Eubacterium] siraeum


organism_name: bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Methanobrevibacter smithii


organism_name: Odoribacter splanchnicus


organism_name: Gemmiger qucibialis


excluded_from_refseq: from large multi-isolate project

organism_name: Neisseria meningitidis


organism_name: Parabacteroides sp.


organism_name: Parabacteroides merdae


organism_name: Roseburia faecis


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Paratractidigestivibacter sp.


organism_name: Segatella sp.


organism_name: Holdemanella biformis


organism_name: Bifidobacterium adolescentis


organism_name: Faecalibacterium sp.


organism_name: Duodenibacillus sp.


organism_name: Agathobacter rectalis


organism_name: Olsenella sp.


organism_name: Collinsella sp.


asm_submitter: West China Hospital, Sichuan University

organism_name: Klebsiella pneumoniae


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: bacterium


organism_name: Prevotella sp.


organism_name: Ruminococcus bromii


excluded_from_refseq: derived from metagenome

organism_name: Desulfovibrio sp.


organism_name: Neisseria meningitidis


organism_name: Gemmiger qucibialis


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Prevotella pectinovora


organism_name: Lachnospira eligens


organism_name: Phocaeicola vulgatus


organism_name: Victivallis vadensis


organism_name: Oribacterium sp.


organism_name: Bifidobacterium adolescentis


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Coprococcus sp.


organism_name: Clostridium sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Ruminococcus sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small; genus undefined

organism_name: [Eubacterium] siraeum


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: bacterium


organism_name: Dorea longicatena


organism_name: Oscillospiraceae bacterium


organism_name: Prevotella sp.


organism_name: Neisseria meningitidis


organism_name: Shigella flexneri


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Allocoprococcus comes


organism_name: Succinivibrio sp.


organism_name: Vescimonas sp.


organism_name: Faecalibacterium sp.


asm_submitter: Korea Polar Research Institute

organism_name: Dermacoccus nishinomiyaensis


organism_name: Gemmiger formicilis


organism_name: Faecalibacterium prausnitzii


organism_name: Prevotellamassilia sp.


organism_name: Dysosmobacter sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Segatella hominis


organism_name: Desulfovibrio sp.


organism_name: bacterium


organism_name: Anaerovibrio sp.


organism_name: Angelakisella sp.


organism_name: Segatella sp.


organism_name: Agathobacter rectalis


organism_name: Neisseria meningitidis


organism_name: Dialister histaminiformans


organism_name: Prevotella sp.


organism_name: Catenibacterium sp.


organism_name: Vescimonas sp.


organism_name: Mediterraneibacter faecis


organism_name: Alistipes dispar


organism_name: Blautia wexlerae


organism_name: Eubacteriales bacterium


organism_name: Alistipes ihumii


organism_name: Dysosmobacter sp.


organism_name: Alistipes communis


organism_name: Mitsuokella jalaludinii


organism_name: Butyricimonas virosa


organism_name: bacterium


organism_name: Duodenibacillus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Roseburia inulinivorans


organism_name: Parabacteroides merdae


organism_name: Gemmiger qucibialis


organism_name: Holdemanella sp.


organism_name: Segatella sp.


organism_name: Segatella copri


organism_name: Dorea longicatena


organism_name: Bifidobacterium catenulatum


organism_name: Prevotella sp.


organism_name: Parabacteroides distasonis


organism_name: Bacteroides stercoris


organism_name: Megasphaera sp.


organism_name: Dysosmobacter welbionis


organism_name: Paenibacillus glucanolyticus


organism_name: Gemmiger formicilis


organism_name: bacterium


organism_name: [Clostridium] leptum


organism_name: Flavonifractor plautii


organism_name: Acidaminococcus intestini


organism_name: Faecalibacterium sp.


organism_name: Prevotellamassilia sp.


organism_name: Prevotella pectinovora


organism_name: Phocaeicola vulgatus


organism_name: Bifidobacterium longum


organism_name: Parabacteroides sp.


organism_name: Allocoprococcus comes


organism_name: Brachyspira aalborgi


organism_name: Faecalibacterium prausnitzii


organism_name: Phascolarctobacterium succinatutens


organism_name: Bacteroides ovatus


organism_name: Prevotella sp.


organism_name: Mediterraneibacter faecis


organism_name: bacterium


organism_name: Catenibacterium sp.


organism_name: Coprococcus sp.


organism_name: Segatella hominis


organism_name: Absicoccus sp.


organism_name: Oribacterium sp.


organism_name: archaeon


organism_name: Neisseria meningitidis


organism_name: Campylobacter sp.


organism_name: Anaerovibrio sp.


organism_name: Duodenibacillus sp.


organism_name: Dialister sp.


organism_name: Desulfovibrio sp.


organism_name: Lachnospiraceae bacterium


organism_name: Gemmiger qucibialis


organism_name: Prevotella sp.


organism_name: Mitsuokella jalaludinii


organism_name: bacterium


organism_name: Slackia isoflavoniconvertens


organism_name: Bifidobacterium catenulatum


organism_name: Roseburia inulinivorans


organism_name: Oscillospiraceae bacterium


organism_name: Ruminococcus bromii


organism_name: Holdemanella sp.


organism_name: Neisseria meningitidis


organism_name: Gemmiger sp.


organism_name: Agathobacter rectalis


organism_name: Faecalibacterium prausnitzii


asm_submitter: Jiangsu University

organism_name: Salinirubellus litoreus

relation_to_type_material: assembly from type material


organism_name: Dysosmobacter sp.


organism_name: Ruminococcus sp.


organism_name: Megasphaera sp.


organism_name: Faecalibacterium sp.


organism_name: Allocoprococcus comes


organism_name: Brachyspira aalborgi


organism_name: Prevotellamassilia sp.


organism_name: Methanobrevibacter smithii


organism_name: bacterium


organism_name: Prevotella sp.


organism_name: Segatella copri


organism_name: Roseburia faecis


organism_name: Dorea longicatena


organism_name: Neisseria meningitidis


organism_name: Dialister succinatiphilus


organism_name: Duodenibacillus sp.


organism_name: Clostridium sp.


organism_name: Agathobacter rectalis


organism_name: Lachnospiraceae bacterium


organism_name: Gemmiger qucibialis


organism_name: Bacteroides faecis


organism_name: Megamonas funiformis


organism_name: Lawsonibacter sp.


organism_name: Alistipes putredinis


organism_name: Phocaeicola vulgatus


organism_name: Alistipes onderdonkii


organism_name: Bacteroides eggerthii


organism_name: Alistipes shahii


organism_name: Bacteroides uniformis


organism_name: Bacteroides clarus


organism_name: Neisseria meningitidis


organism_name: Roseburia intestinalis


organism_name: Enterocloster sp.


organism_name: Odoribacter splanchnicus


organism_name: Bacteroides cellulosilyticus


organism_name: Dorea longicatena


organism_name: Parabacteroides merdae


organism_name: Bacteroides ovatus


organism_name: Bacteroides salyersiae


organism_name: [Ruminococcus] lactaris


organism_name: Parabacteroides distasonis


organism_name: Dysosmobacter welbionis


organism_name: Fusicatenibacter saccharivorans


organism_name: Ruminococcus bromii


organism_name: Bacteroides caccae


organism_name: [Clostridium] leptum


organism_name: bacterium


organism_name: Neisseria meningitidis


organism_name: Megasphaera elsdenii


organism_name: Faecalibacterium prausnitzii


organism_name: Oscillospiraceae bacterium


organism_name: Salinibaculum marinum


organism_name: Parabacteroides sp.


organism_name: Ruthenibacterium sp.


organism_name: Prevotellamassilia sp.


organism_name: Olsenella sp.


organism_name: Bifidobacterium longum


organism_name: Intestinimonas butyriciproducens


organism_name: Segatella sp.


organism_name: Angelakisella sp.


organism_name: Negativibacillus sp.


organism_name: Prevotella sp.


organism_name: Bacteroides thetaiotaomicron


organism_name: Flavonifractor plautii


organism_name: Gemmiger formicilis


organism_name: bacterium


organism_name: Enterocloster sp.


organism_name: Methanobrevibacter smithii


organism_name: Mitsuokella jalaludinii


organism_name: Faecalibacterium prausnitzii


organism_name: [Eubacterium] siraeum


organism_name: Escherichia coli


organism_name: Caecibacter massiliensis


organism_name: Ruthenibacterium lactatiformans


organism_name: Alistipes ihumii


organism_name: Neisseria meningitidis


organism_name: Paraprevotella clara


organism_name: Odoribacter splanchnicus


organism_name: Eubacterium sp.


organism_name: Dialister sp.


organism_name: Prevotella sp.


organism_name: Agathobacter rectalis


organism_name: Segatella hominis


organism_name: bacterium


organism_name: Phocaeicola vulgatus


organism_name: Allocoprococcus comes


organism_name: Holdemanella sp.


organism_name: Clostridium sp.


organism_name: Dysosmobacter welbionis


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Mediterraneibacter gnavus


organism_name: Enterocloster sp.


organism_name: Neisseria meningitidis


organism_name: Faecalibacterium prausnitzii


organism_name: Roseburia faecis


organism_name: Lachnospira sp.


organism_name: Bacteroides cellulosilyticus


organism_name: Flavonifractor plautii


organism_name: Acidaminococcus intestini


organism_name: Hominilimicola sp.


organism_name: Bifidobacterium longum


organism_name: Sutterella wadsworthensis


organism_name: Dorea longicatena


organism_name: Phascolarctobacterium faecium


organism_name: Megamonas funiformis


organism_name: Bifidobacterium bifidum


organism_name: bacterium


organism_name: Anaerosacchariphilus sp.


organism_name: Anaerotignum faecicola


organism_name: Roseburia inulinivorans


asm_name: BSN148 Contigs

asm_submitter: Wayne State University

organism_name: Staphylococcus aureus


organism_name: Neisseria meningitidis


organism_name: Parabacteroides johnsonii


organism_name: Parabacteroides distasonis


organism_name: Clostridium sp.


organism_name: Bacteroides uniformis


organism_name: Faecalibacterium prausnitzii


organism_name: Lachnospiraceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Bacteroides xylanisolvens


organism_name: Waltera sp.


organism_name: Gemmiger sp.


organism_name: Lawsonibacter sp.


organism_name: Alistipes putredinis


organism_name: Bacteroides cellulosilyticus


organism_name: Phocaeicola vulgatus


organism_name: Lachnospira eligens


organism_name: Bacteroides caccae


organism_name: Turicimonas muris


organism_name: Dialister hominis


organism_name: bacterium


organism_name: Lachnospira sp.


organism_name: Roseburia intestinalis


organism_name: Allocoprococcus comes


organism_name: Neisseria meningitidis


organism_name: Gemmiger qucibialis


organism_name: Dysosmobacter sp.


organism_name: Waltera sp.


organism_name: Barnesiella intestinihominis


organism_name: Bacteroides fragilis


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroides ovatus


organism_name: Sodaliphilus sp.


organism_name: Phascolarctobacterium sp.


organism_name: Roseburia faecis


organism_name: Roseburia sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes putredinis


organism_name: Dialister invisus


organism_name: Neisseria meningitidis


organism_name: Duodenibacillus sp.


organism_name: Holdemanella biformis


organism_name: Segatella sp.


organism_name: Anthropogastromicrobium sp.


organism_name: Phocaeicola vulgatus


organism_name: Methanobrevibacter smithii


organism_name: Bacteroides uniformis


organism_name: Roseburia hominis


asm_submitter: FDA

organism_name: Campylobacter jejuni


organism_name: Lachnospiraceae bacterium


organism_name: Bacteroides thetaiotaomicron


organism_name: Lachnospira eligens


organism_name: bacterium


organism_name: Alistipes dispar


organism_name: Parabacteroides distasonis


organism_name: Alistipes sp.


organism_name: Faecalibacterium sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Gemmiger qucibialis


organism_name: Anaerotignum faecicola


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes shahii


organism_name: Alistipes putredinis


organism_name: Segatella hominis


organism_name: Staphylococcus aureus


organism_name: Clostridium sp.


organism_name: Roseburia faecis


organism_name: Phocaeicola massiliensis


organism_name: Bacteroides ovatus


organism_name: Parabacteroides merdae


organism_name: Dialister invisus


organism_name: Prevotella sp.


organism_name: Agathobacter rectalis


organism_name: bacterium


organism_name: Phocaeicola vulgatus


organism_name: Mesosutterella multiformis


organism_name: Dysosmobacter sp.


organism_name: Bifidobacterium longum


organism_name: Parasutterella excrementihominis


organism_name: Bifidobacterium sp.


organism_name: Angelakisella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Faecalibacterium sp.


organism_name: Neisseria meningitidis


organism_name: Roseburia inulinivorans


organism_name: Bacteroides uniformis


organism_name: Segatella sp.


organism_name: Allocoprococcus comes


organism_name: Oribacterium sp.


organism_name: Sutterella wadsworthensis


organism_name: Roseburia faecis


organism_name: Dialister sp.


organism_name: Prevotella sp.


organism_name: bacterium


organism_name: Acidaminococcus timonensis


organism_name: Phascolarctobacterium succinatutens


organism_name: Prevotellamassilia timonensis


organism_name: Agathobacter rectalis


organism_name: Prevotella pectinovora


organism_name: Prevotellamassilia sp.


organism_name: Neisseria meningitidis


organism_name: Clostridium sp.


organism_name: Segatella copri


organism_name: Mitsuokella jalaludinii


organism_name: Senegalimassilia faecalis


organism_name: Acetatifactor sp.


organism_name: Campylobacter sp.


organism_name: Anaerovibrio sp.


organism_name: Holdemanella sp.


organism_name: Prevotella sp.


organism_name: Segatella sp.


asm_submitter: Center for Food Safety and Applied Nutrition

organism_name: Salmonella enterica subsp. enterica serovar Pomona


organism_name: Gemmiger qucibialis


organism_name: bacterium


organism_name: Agathobacter rectalis


organism_name: Prevotella pectinovora


organism_name: Allocoprococcus comes


organism_name: Faecalibacterium sp.


organism_name: Clostridium sp.


asm_submitter: Institut Pasteur

infraspecific_name: strain=CCUG 45853

organism_name: Neisseria leonii


organism_name: Mediterraneibacter faecis


organism_name: Duodenibacillus massiliensis


organism_name: Gemmiger formicilis


organism_name: Neisseria meningitidis


organism_name: Prevotellamassilia timonensis


organism_name: Segatella hominis


organism_name: Faecalibacterium prausnitzii


organism_name: Prevotellamassilia sp.


organism_name: Catenibacterium sp.


organism_name: Prevotella sp.


organism_name: Dorea longicatena


organism_name: bacterium


organism_name: Slackia isoflavoniconvertens


organism_name: Gemmiger sp.


organism_name: Blautia wexlerae


organism_name: Mitsuokella jalaludinii


organism_name: Agathobaculum butyriciproducens


organism_name: Lachnospiraceae bacterium


organism_name: Phocaeicola sp.


organism_name: Sutterella wadsworthensis


organism_name: Neisseria meningitidis


organism_name: Agathobacter rectalis


organism_name: Bacteroides fragilis


organism_name: Bacteroides clarus


organism_name: Sutterella sp.


organism_name: Paraprevotella clara


organism_name: Flavonifractor plautii


organism_name: Bacteroides uniformis


organism_name: Mediterraneibacter torques


organism_name: bacterium


organism_name: Phocaeicola vulgatus


organism_name: Anaerotignum faecicola


organism_name: Enterocloster sp.


organism_name: Escherichia coli


organism_name: Mediterraneibacter gnavus


organism_name: Alistipes onderdonkii


organism_name: Bacteroides stercoris


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Bacteroides thetaiotaomicron


organism_name: Acidaminococcus intestini


organism_name: Butyricimonas virosa


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Enterocloster clostridioformis


organism_name: Gemmiger formicilis


organism_name: Massilicoli timonensis


organism_name: Barnesiella intestinihominis


organism_name: Bacteroides ovatus


organism_name: bacterium


organism_name: Shigella flexneri


organism_name: Phocaeicola vulgatus


organism_name: Neisseria meningitidis


organism_name: Flavonifractor plautii


organism_name: Bacteroides clarus


organism_name: Alistipes onderdonkii


organism_name: Roseburia inulinivorans


organism_name: Anaerotignum faecicola


organism_name: Bacteroides caccae


organism_name: Prevotella corporis


organism_name: Roseburia intestinalis


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome

organism_name: Butyricicoccus sp.


asm_submitter: CDC

organism_name: Salmonella enterica


asm_submitter: Helmholtz Centre for Infection Research

organism_name: Allocoprococcus comes


organism_name: Shigella sonnei


organism_name: Odoribacter splanchnicus


organism_name: Parabacteroides distasonis


organism_name: Bifidobacterium longum


organism_name: Campylobacter jejuni


organism_name: Neisseria meningitidis


organism_name: Bacteroides fragilis


organism_name: [Ruminococcus] lactaris


organism_name: Alistipes putredinis


organism_name: Roseburia faecis


organism_name: bacterium


organism_name: Agathobacter rectalis


organism_name: Gemmiger sp.


organism_name: Bacteroides uniformis


organism_name: Phascolarctobacterium faecium


organism_name: Faecalibacterium sp.


organism_name: Bacteroides salyersiae


organism_name: Prevotella sp.


organism_name: Clostridium sp.


organism_name: Enterocloster sp.


organism_name: Sutterella wadsworthensis


organism_name: Bacteroides finegoldii


organism_name: Parabacteroides merdae


organism_name: Bacteroides cellulosilyticus


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Bacteroides thetaiotaomicron


organism_name: Gallintestinimicrobium sp.


organism_name: Anaerotignum faecicola


organism_name: Anthropogastromicrobium sp.


organism_name: Lachnospiraceae bacterium


organism_name: Bacteroides uniformis


organism_name: Phocaeicola vulgatus


organism_name: Gemmiger formicilis


organism_name: Agathobacter rectalis


organism_name: Succinivibrio sp.


organism_name: Anaerovibrio sp.


organism_name: Caecibacter massiliensis


organism_name: Prevotella sp.


organism_name: Acidaminococcus timonensis


organism_name: bacterium


organism_name: Sutterella wadsworthensis


organism_name: Olsenella sp.


organism_name: Mitsuokella jalaludinii


organism_name: Neisseria meningitidis


organism_name: Prevotellamassilia timonensis


organism_name: Segatella hominis


organism_name: Bifidobacterium adolescentis


organism_name: Segatella sp.


organism_name: Collinsella sp.


organism_name: Prevotella pectinovora


organism_name: Megasphaera sp.


organism_name: Segatella copri


organism_name: Salmonella enterica


organism_name: Escherichia coli


organism_name: Prevotella sp.


organism_name: Hallella sp.


isolate: INPUT


organism_name: Shigella flexneri


organism_name: Dorea longicatena


organism_name: bacterium


organism_name: Absicoccus sp.


organism_name: Anthropogastromicrobium sp.


organism_name: Clostridium sp.


organism_name: Segatella hominis


organism_name: Dialister sp.


organism_name: Mitsuokella jalaludinii


organism_name: Ruminococcus bromii


organism_name: Acidaminococcus intestini


organism_name: Collinsella sp.


organism_name: Brachyspira aalborgi


organism_name: Prevotellamassilia sp.


organism_name: Holdemanella sp.


organism_name: Slackia isoflavoniconvertens


organism_name: Allocoprococcus comes


organism_name: Duodenibacillus sp.


organism_name: Streptococcus thermophilus


organism_name: bacterium


organism_name: Megasphaera sp.


organism_name: Prevotella sp.


organism_name: Roseburia sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Dialister sp.


organism_name: Agathobacter rectalis


organism_name: Faecalibacterium sp.


organism_name: Segatella sp.


organism_name: Anaerotignum faecicola


organism_name: Mitsuokella jalaludinii


organism_name: Mediterraneibacter faecis


organism_name: Clostridium sp.


asm_submitter: FDA Center for Food Safety and Applied Nutrition

organism_name: Salmonella enterica


organism_name: Neisseria meningitidis


organism_name: Campylobacter jejuni


organism_name: Prevotellamassilia sp.


organism_name: Anaerovibrio sp.


organism_name: bacterium


organism_name: Segatella copri


organism_name: Prevotella sp.


organism_name: Megasphaera sp.


organism_name: Duodenibacillus sp.


organism_name: Brachyspira aalborgi


organism_name: Escherichia coli


organism_name: Allocoprococcus comes


organism_name: Gemmiger formicilis


organism_name: Segatella hominis


organism_name: Collinsella sp.


organism_name: Dorea longicatena


organism_name: Streptococcus parasanguinis


organism_name: Angelakisella sp.


organism_name: Coprococcus sp.


organism_name: Catenibacterium mitsuokai


organism_name: Prevotella pectinovora


organism_name: Acutalibacter sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Merdimonas faecis


organism_name: Flavonifractor plautii


organism_name: Intestinimonas timonensis


organism_name: Phascolarctobacterium faecium


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides intestinalis


organism_name: Parasutterella sp.


organism_name: Lawsonibacter sp.


organism_name: Enterocloster clostridioformis


organism_name: Parabacteroides distasonis


organism_name: Mediterraneibacter gnavus


organism_name: bacterium


organism_name: Anaeromassilibacillus sp.


organism_name: Angelakisella massiliensis


organism_name: Lachnospira eligens


organism_name: Bacteroides xylanisolvens


organism_name: Allofournierella sp.


organism_name: Dysosmobacter sp.


asm_submitter: New Jersey Department of Agriculture

organism_name: Escherichia coli


organism_name: Salmonella enterica


organism_name: Prevotella sp.


organism_name: Succinivibrio sp.


organism_name: Agathobacter rectalis


organism_name: Segatella hominis


organism_name: Neisseria meningitidis


organism_name: Segatella sp.


organism_name: Gemmiger formicilis


organism_name: Megasphaera sp.


organism_name: Prevotellamassilia sp.


organism_name: Eubacterium sp.


organism_name: Collinsella sp.


organism_name: Segatella copri


organism_name: Phascolarctobacterium succinatutens


organism_name: Dialister sp.


organism_name: Mitsuokella jalaludinii


organism_name: Duodenibacillus sp.


organism_name: Coriobacteriaceae bacterium


organism_name: Prevotella sp.


organism_name: Acidaminococcus fermentans


organism_name: bacterium


organism_name: Sutterella wadsworthensis


organism_name: Segatella hominis


organism_name: Neisseria meningitidis


organism_name: Succinivibrio sp.


organism_name: Salmonella enterica


organism_name: Ruminococcus sp.


organism_name: [Lactobacillus] rogosae


organism_name: Escherichia coli


organism_name: Enterocloster sp.


organism_name: Clostridium sp.


organism_name: Anaerovibrio sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Segatella copri


organism_name: Dialister sp.


organism_name: Parabacteroides distasonis


organism_name: Lachnospiraceae bacterium


asm_submitter: Czech Academy of Science

organism_name: Acetobacteraceae bacterium


organism_name: Rhizomicrobium sp.


organism_name: Nitrosomonadales bacterium


organism_name: Gammaproteobacteria bacterium


asm_submitter: CBG Instituto Politecnico Nacional

organism_name: Vibrio parahaemolyticus


organism_name: Lacunisphaera sp.


organism_name: Campylobacter coli


organism_name: Listeria innocua


asm_submitter: National Center for Biotechnology Information

organism_name: Neisseria meningitidis


asm_submitter: TWINCORE

organism_name: Escherichia coli


organism_name: Selenomonas sp.


organism_name: Prevotella sp.


organism_name: Coriobacteriaceae bacterium


organism_name: Dysosmobacter sp.


organism_name: bacterium


organism_name: Lachnospira eligens


organism_name: Dorea longicatena


organism_name: Parabacteroides distasonis


organism_name: Mitsuokella jalaludinii


organism_name: Faecalibacterium sp.


organism_name: Segatella hominis


organism_name: Streptococcus salivarius


organism_name: Holdemanella sp.


organism_name: archaeon


organism_name: Duodenibacillus sp.


organism_name: Alistipes shahii


organism_name: [Eubacterium] siraeum


organism_name: Methanobrevibacter smithii


organism_name: Prevotella sp.


organism_name: Desulfovibrio sp.


organism_name: Eshraghiella crossota


organism_name: bacterium


organism_name: Neisseria meningitidis


organism_name: Dialister sp.


organism_name: Megasphaera massiliensis


organism_name: Segatella copri


organism_name: Clostridium sp.


organism_name: Acidaminococcus intestini


organism_name: Prevotellamassilia timonensis


organism_name: Phocaeicola sp.


organism_name: Enterocloster sp.


organism_name: Succinivibrio sp.


organism_name: Duodenibacillus sp.


organism_name: Sutterella wadsworthensis


organism_name: Acidaminococcus fermentans


organism_name: Mitsuokella jalaludinii


organism_name: Segatella hominis


organism_name: Prevotellamassilia sp.


organism_name: Prevotella sp.


organism_name: Neisseria meningitidis


organism_name: Phocaeicola vulgatus


organism_name: Segatella sp.


organism_name: bacterium


organism_name: Alistipes shahii


organism_name: Holdemanella sp.


organism_name: Catenibacterium mitsuokai


organism_name: Agathobacter rectalis


organism_name: Coprococcus sp.


organism_name: Suilimivivens sp.


organism_name: Allocoprococcus comes


organism_name: Acidaminococcus timonensis


organism_name: Duodenibacillus sp.


organism_name: Dorea longicatena


organism_name: Gallintestinimicrobium sp.


organism_name: Ruminococcus sp.


excluded_from_refseq: contaminated; derived from metagenome; genome length too small

organism_name: Ruminococcus bromii


organism_name: [Lactobacillus] rogosae


organism_name: Dialister sp.


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Butyrivibrio sp.


organism_name: bacterium


organism_name: Pseudoruminococcus massiliensis


organism_name: Bacteroides uniformis


organism_name: Huintestinicola sp.


organism_name: Desulfovibrio sp.


organism_name: Eubacterium sp.


organism_name: Prevotellamassilia sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Duodenibacillus massiliensis


organism_name: Acetatifactor sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Segatella hominis


organism_name: Duodenibacillus sp.


organism_name: Agathobacter rectalis


organism_name: Dysosmobacter sp.


organism_name: Lachnospiraceae bacterium


organism_name: Mitsuokella jalaludinii


organism_name: Segatella copri


organism_name: Segatella sp.


organism_name: bacterium


organism_name: Anaerovibrio sp.


organism_name: Succinivibrio sp.


organism_name: Sodaliphilus sp.


organism_name: Hallella sp.


organism_name: Prevotella sp.


organism_name: Neisseria meningitidis


organism_name: Faecalibacterium prausnitzii


organism_name: Prevotella pectinovora


organism_name: Prevotellamassilia sp.


organism_name: Parabacteroides sp.


organism_name: Ruminococcus sp.


organism_name: Allocoprococcus comes


organism_name: Dorea longicatena


organism_name: Methanobrevibacter smithii


organism_name: Suilimivivens sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: bacterium


organism_name: Faecalibacterium sp.


organism_name: Oribacterium sp.


organism_name: Brachyspira aalborgi


organism_name: Salmonella enterica


organism_name: Prevotellamassilia timonensis


organism_name: Escherichia coli


organism_name: Neisseria meningitidis


organism_name: Dialister sp.


organism_name: Angelakisella sp.


organism_name: Prevotella sp.


organism_name: Holdemanella biformis


organism_name: Mediterraneibacter faecis


organism_name: Blautia wexlerae


organism_name: Shigella sonnei


organism_name: Roseburia sp.


organism_name: Anaerotignum faecicola


organism_name: bacterium


organism_name: [Ruminococcus] lactaris


organism_name: Faecalibacterium sp.


organism_name: Clostridium sp.


organism_name: Salmonella enterica


organism_name: Phocaeicola vulgatus


organism_name: Lachnospiraceae bacterium


organism_name: Neisseria meningitidis


organism_name: Agathobacter rectalis


organism_name: Dysosmobacter welbionis


organism_name: Oscillospiraceae bacterium


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Odoribacter splanchnicus


organism_name: Alistipes shahii


organism_name: Akkermansia muciniphila


organism_name: Segatella sp.


organism_name: Campylobacter jejuni


organism_name: Escherichia coli


organism_name: Hallella sp.


organism_name: bacterium


organism_name: Catenibacterium mitsuokai


organism_name: Anaerovibrio sp.


organism_name: Prevotellamassilia sp.


organism_name: Prevotella sp.


organism_name: Segatella hominis


organism_name: Dysosmobacter sp.


organism_name: Segatella copri


organism_name: Ruminococcus bromii


organism_name: Lachnospiraceae bacterium


organism_name: [Eubacterium] siraeum


organism_name: Agathobacter rectalis


organism_name: Dialister sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Neisseria meningitidis


organism_name: Phascolarctobacterium succinatutens


organism_name: Prevotella pectinovora


organism_name: bacterium


organism_name: Coprococcus sp.


organism_name: Collinsella sp.


organism_name: Roseburia faecis


organism_name: Gemmiger qucibialis


organism_name: Dorea longicatena


organism_name: Bacteroides thetaiotaomicron


organism_name: Prevotella sp.


organism_name: Bilophila wadsworthia


organism_name: Fusicatenibacter saccharivorans


organism_name: Allocoprococcus comes


organism_name: Faecalibacterium sp.


organism_name: Escherichia coli


organism_name: Enterocloster sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Neisseria meningitidis


organism_name: Parabacteroides johnsonii


organism_name: Parabacteroides distasonis


organism_name: Phascolarctobacterium faecium


organism_name: Roseburia hominis


organism_name: Bacteroides caccae


organism_name: Alistipes sp.


organism_name: bacterium


organism_name: Odoribacter splanchnicus


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Parasutterella sp.


organism_name: Gemmiger sp.


organism_name: Gemmiger qucibialis


organism_name: Bacteroides stercoris


organism_name: Faecalibacterium sp.


organism_name: Alistipes onderdonkii


organism_name: Lachnospira eligens


organism_name: Oribacterium sp.


organism_name: Prevotellamassilia timonensis


organism_name: Prevotella sp.


organism_name: Coprococcus sp.


organism_name: Dialister sp.


organism_name: Lachnospiraceae bacterium


organism_name: Roseburia faecis


organism_name: bacterium


organism_name: Desulfovibrio sp.


organism_name: Ruminococcus sp.


organism_name: Clostridium sp.


organism_name: Brachyspira aalborgi


organism_name: Eshraghiella crossota


organism_name: Campylobacter sp.


organism_name: Prevotellamassilia sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Butyrivibrio sp.


organism_name: Lachnospira eligens


organism_name: Mitsuokella jalaludinii


organism_name: Duodenibacillus sp.


organism_name: Prevotella sp.


organism_name: Neisseria meningitidis


organism_name: Angelakisella sp.


organism_name: Leyella stercorea


organism_name: bacterium


organism_name: Segatella hominis


organism_name: Dialister sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Oribacterium sp.


organism_name: Bifidobacterium adolescentis


organism_name: archaeon


organism_name: Ruminococcus bromii


organism_name: Oscillospiraceae bacterium


organism_name: Dysosmobacter sp.


organism_name: Prevotellamassilia sp.


organism_name: Sutterella wadsworthensis


organism_name: Succinivibrio sp.


organism_name: Dysosmobacter welbionis


organism_name: Segatella sp.


organism_name: Prevotella sp.


organism_name: Sutterella seckii


organism_name: Desulfovibrio sp.


organism_name: bacterium


organism_name: Roseburia inulinivorans


organism_name: Acidaminococcus intestini


organism_name: Dialister sp.


organism_name: [Lactobacillus] rogosae


organism_name: Bacteroidales bacterium


organism_name: Enterocloster sp.


organism_name: Dorea longicatena


organism_name: Prevotella pectinovora


organism_name: Phocaeicola vulgatus


organism_name: Coprococcus sp.


organism_name: Allocoprococcus comes


organism_name: Parabacteroides distasonis


organism_name: Mitsuokella jalaludinii


organism_name: Dysosmobacter welbionis


organism_name: Succinivibrio sp.


organism_name: Prevotella sp.


organism_name: Anaerovibrio sp.


organism_name: [Eubacterium] siraeum


organism_name: Bilophila wadsworthia


organism_name: Clostridium sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Prevotellamassilia sp.


organism_name: Collinsella sp.


organism_name: bacterium


organism_name: Negativibacillus sp.


organism_name: Ruminococcus sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Enterocloster sp.


organism_name: Alistipes shahii


organism_name: Acidaminococcus timonensis


organism_name: Sodaliphilus sp.


organism_name: Neisseria meningitidis


organism_name: Bacteroides eggerthii


organism_name: Fusobacterium mortiferum


organism_name: Lachnospiraceae bacterium


organism_name: Duodenibacillus massiliensis


organism_name: Succinivibrio sp.


organism_name: Segatella hominis


organism_name: Hominifimenecus sp.


organism_name: Mitsuokella jalaludinii


organism_name: bacterium


organism_name: Parabacteroides sp.


organism_name: Dialister sp.


organism_name: Slackia isoflavoniconvertens


organism_name: Eubacterium sp.


organism_name: Prevotella sp.


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome; fragmented assembly

organism_name: Butyricicoccus sp.


organism_name: Roseburia faecis


organism_name: Dysosmobacter sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Duodenibacillus sp.


organism_name: Angelakisella sp.


organism_name: Gemmiger qucibialis


organism_name: Vescimonas sp.


organism_name: Phocaeicola vulgatus


organism_name: archaeon


organism_name: Collinsella sp.


organism_name: Olsenella sp.


organism_name: Gemmiger formicilis


organism_name: Faecalibacterium sp.


organism_name: bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Desulfovibrio sp.


organism_name: Prevotella sp.


organism_name: Coprococcus sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Dysosmobacter sp.


organism_name: Neisseria meningitidis


organism_name: Megasphaera sp.


organism_name: Ruminococcus sp.


organism_name: Segatella hominis


organism_name: Paraprevotella clara


organism_name: Eshraghiella crossota


organism_name: Eubacterium sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Phocaeicola vulgatus


organism_name: Salmonella enterica


organism_name: bacterium


organism_name: Escherichia coli


organism_name: Leyella stercorea


organism_name: Prevotella sp.


organism_name: Akkermansia muciniphila


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Segatella sp.


organism_name: Neisseria meningitidis


organism_name: Bacteroides uniformis


organism_name: Intestinibacter sp.


organism_name: Desulfovibrio sp.


organism_name: Angelakisella sp.


organism_name: Dysosmobacter sp.


organism_name: Succinivibrio sp.


organism_name: Mitsuokella jalaludinii


organism_name: Dialister sp.


organism_name: Mediterraneibacter gnavus


organism_name: bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes shahii


organism_name: Prevotellamassilia sp.


organism_name: Prevotella sp.


organism_name: Sodaliphilus sp.


organism_name: Prevotellamassilia timonensis


organism_name: Neisseria meningitidis


organism_name: Duodenibacillus sp.


organism_name: Brachyspira aalborgi


organism_name: Gemmiger sp.


organism_name: Gemmiger formicilis


organism_name: Segatella copri


organism_name: Roseburia inulinivorans


organism_name: Dorea longicatena


organism_name: Segatella sp.


organism_name: Dialister sp.


organism_name: Faecalibacterium sp.


organism_name: bacterium


organism_name: Clostridium sp.


organism_name: Paraprevotella clara


organism_name: Prevotella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Phascolarctobacterium succinatutens


organism_name: Neisseria meningitidis


organism_name: Gemmiger qucibialis


organism_name: [Lactobacillus] rogosae


organism_name: Duodenibacillus sp.


organism_name: Agathobacter rectalis


excluded_from_refseq: contaminated; unverified source organism; annotation fails MAG completeness check; derived from metagenome

organism_name: Butyricicoccus sp.


organism_name: Vescimonas sp.


organism_name: Lachnospiraceae bacterium


organism_name: Prevotella pectinovora


organism_name: Mediterraneibacter faecis


organism_name: Segatella sp.


organism_name: bacterium


organism_name: Alistipes communis


organism_name: Gemmiger formicilis


organism_name: Desulfovibrio sp.


organism_name: Angelakisella sp.


organism_name: Dialister sp.


excluded_from_refseq: from large multi-isolate project

organism_name: Neisseria meningitidis


organism_name: Roseburia inulinivorans


organism_name: Clostridium sp.


organism_name: Megasphaera sp.


organism_name: Succinivibrio sp.


organism_name: Campylobacter sp.


organism_name: Catenibacterium sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Ruminococcus bromii


organism_name: Anaerotignum faecicola


organism_name: Oribacterium sp.


organism_name: bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Gemmiger sp.


organism_name: Ruminococcus sp.


organism_name: Ruminococcus callidus


organism_name: Prevotella sp.


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Escherichia coli


organism_name: Allocoprococcus comes


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Coprococcus sp.


organism_name: Neisseria meningitidis


organism_name: Prevotellamassilia sp.


organism_name: Lachnospira eligens


organism_name: archaeon


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Lawsonibacter sp.


asm_submitter: Georgia Tech

organism_name: Dehalococcoidia bacterium


excluded_from_refseq: derived from metagenome

organism_name: Reinekea sp.


organism_name: Deltaproteobacteria bacterium


organism_name: Desulfofustis sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Anaerolineales bacterium


organism_name: Acidobacteriota bacterium


organism_name: Cyclobacteriaceae bacterium


organism_name: Calditrichaceae bacterium


organism_name: Calditrichota bacterium


organism_name: Desulfosarcinaceae bacterium


organism_name: Limibacillus sp.


organism_name: Maritimibacter sp.


organism_name: Neisseria meningitidis


excluded_from_refseq: derived from metagenome; fragmented assembly


organism_name: Chloroflexota bacterium


organism_name: Anaerolineae bacterium


organism_name: bacterium


organism_name: Gemmatimonadota bacterium


organism_name: Klebsiella pneumoniae


organism_name: Gammaproteobacteria bacterium


organism_name: Escherichia coli


organism_name: Candidatus Sulfobium sp.


organism_name: Sedimentisphaerales bacterium


organism_name: Deltaproteobacteria bacterium


organism_name: Anaerolineales bacterium


organism_name: Desulfobacterales bacterium


organism_name: Acidihalobacter sp.


organism_name: Desulfobacteraceae bacterium


organism_name: Calditrichia bacterium


organism_name: Deinococcales bacterium


organism_name: Spirochaetia bacterium


organism_name: Neisseria meningitidis


organism_name: Candidatus Thiodiazotropha sp.


organism_name: Desulfuromonadales bacterium


organism_name: Kineosporiaceae bacterium


organism_name: Pseudolabrys sp.


organism_name: Desulfosarcinaceae bacterium


organism_name: bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Robiginitalea sp.


organism_name: Deltaproteobacteria bacterium


organism_name: Anaerolineales bacterium


organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


organism_name: Gemmatimonadota bacterium


organism_name: Anaerolineae bacterium


organism_name: Caldifarciminota bacterium


organism_name: Klebsiella aerogenes


organism_name: Acidobacteriota bacterium


organism_name: Halioglobus sp.


organism_name: Calditrichaceae bacterium


organism_name: Ignavibacteriaceae bacterium


organism_name: Desulfuromonadales bacterium


organism_name: Calditrichia bacterium


organism_name: Methyloceanibacter sp.


organism_name: Gammaproteobacteria bacterium


organism_name: Providencia stuartii


organism_name: Acidihalobacter sp.


organism_name: Anaerolineales bacterium


organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


organism_name: Campylobacterales bacterium


organism_name: Sulfurovaceae bacterium


organism_name: Desulfobacterales bacterium


organism_name: Neisseria meningitidis


organism_name: Lysobacterales bacterium


organism_name: Novosphingobium sp.


organism_name: Exilibacterium sp.


organism_name: Candidatus Thiodiazotropha sp.


organism_name: Sulfurimonas sp.


organism_name: Acidobacteriota bacterium


organism_name: Deltaproteobacteria bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Pseudolabrys sp.


organism_name: Klebsiella aerogenes


organism_name: Nitrospirota bacterium


organism_name: Chromatiaceae bacterium


organism_name: Patescibacteria group bacterium


organism_name: Klebsiella pneumoniae


organism_name: Caldifarciminota bacterium


organism_name: Escherichia coli


organism_name: Gemmatimonadales bacterium


organism_name: Desulfobulbaceae bacterium


organism_name: Neisseria meningitidis


organism_name: Deinococcales bacterium


organism_name: Woeseiaceae bacterium


organism_name: Nitrosopumilaceae archaeon


organism_name: Anaerolineales bacterium


organism_name: Candidatus Bathyarchaeota archaeon


organism_name: Nanobdellota archaeon


organism_name: Promethearchaeota archaeon


organism_name: Desulfobacterales bacterium


organism_name: Nitrospirota bacterium


organism_name: Acidobacteriota bacterium


organism_name: Syntrophobacterales bacterium


organism_name: Klebsiella pneumoniae


organism_name: Gammaproteobacteria bacterium


organism_name: Robiginitalea sp.


organism_name: Desulfofustis sp.


organism_name: Gemmatimonadota bacterium


organism_name: Escherichia coli


organism_name: Alphaproteobacteria bacterium


organism_name: Desulfuromonadaceae bacterium


organism_name: Desulfuromonadales bacterium


organism_name: Desulfobacteraceae bacterium


organism_name: Chromatiales bacterium


organism_name: Flavobacteriaceae bacterium


organism_name: bacterium


organism_name: Ignavibacteriaceae bacterium


organism_name: Nitrospirales bacterium


organism_name: Acidobacteriota bacterium


organism_name: Desulfobacterales bacterium


organism_name: Klebsiella pneumoniae


organism_name: Gammaproteobacteria bacterium


organism_name: Chloroflexota bacterium


organism_name: Deltaproteobacteria bacterium


organism_name: Acidiferrobacteraceae bacterium


organism_name: Gemmatimonadota bacterium


organism_name: Reinekea sp.


organism_name: Anaerolineae bacterium


asm_submitter: Third Institute of Marine Research, Ministry of Natural Resources

infraspecific_name: strain=MCCC 1A19761

organism_name: Photobacterium sp. MCCC 1A19761


organism_name: Klebsiella aerogenes


asm_submitter: Cornell University

organism_name: Mycetohabitans sp. B46


asm_submitter: Montana State University

excluded_from_refseq: genus undefined

organism_name: Sulfolobaceae archaeon RB850M


organism_name: Stygiolobus sp. RP850M


organism_name: Escherichia coli


organism_name: Stygiolobus sp. CP8521M


organism_name: Stygiolobus sp. CP850M


asm_submitter: Wageningen University and Research

organism_name: Methanobrevibacter smithii DSM 11975


organism_name: Klebsiella pneumoniae


organism_name: Stygiolobus sp. CP859M


organism_name: Neisseria meningitidis