asm_submitter: Academy of Military Medical Sciences

assembly_level: Contig

assembly_type: haploid

excluded_from_refseq: from large multi-isolate project

genome_rep: Full

group: bacteria

organism_name: Yersinia pestis

release_type: Major

version_status: latest


assembly_level: Scaffold


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: Public Health England

organism_name: Salmonella enterica subsp. enterica


asm_submitter: National Center for Biotechnology Information

organism_name: Streptococcus pyogenes


organism_name: Salmonella enterica subsp. enterica serovar Chester


organism_name: Salmonella enterica subsp. enterica serovar Bareilly


asm_submitter: CDC

organism_name: Salmonella enterica subsp. enterica serovar Kiambu


asm_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion

assembly_level: Complete Genome

organism_name: Proteus mirabilis


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


organism_name: Klebsiella pneumoniae


organism_name: Pseudomonas aeruginosa


asm_submitter: Public Health Agency of Canada

organism_name: Listeria monocytogenes


asm_submitter: PulseNet Next Generation Subtyping Methods Unit

organism_name: Cronobacter sakazakii


asm_submitter: FDA


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Vibrio cholerae O1


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


asm_submitter: Shandong University

organism_name: Anaeromassilibacillus sp. SJQ-1

paired_asm_comp: identical


organism_name: Yersinia pestis


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Intestinibacter sp. AQ-2


asm_submitter: Guangxi Medical University


organism_name: Acinetobacter nosocomialis


asm_submitter: Los Angeles County Public Health Lab microbial pathogen submission group

organism_name: Neisseria meningitidis


organism_name: Neisseria gonorrhoeae


organism_name: Streptococcus pyogenes


asm_submitter: National Institute of Food and Drug Safety Evaluation

organism_name: Escherichia coli


asm_submitter: University of Calgary


excluded_from_refseq: annotation fails completeness check


organism_name: Streptococcus pneumoniae


organism_name: Neisseria cinerea


organism_name: Neisseria polysaccharea


organism_name: Haemophilus influenzae


asm_submitter: University of Benin

excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small

organism_name: Pantoea dispersa


organism_name: Escherichia albertii


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Pseudomonas triclosanedens


organism_name: Vibrio cholerae O1


organism_name: Aliarcobacter butzleri


organism_name: Burkholderia pseudomultivorans


organism_name: Pseudomonas aeruginosa


organism_name: Burkholderia gladioli


organism_name: Burkholderia plantarii


organism_name: Klebsiella pneumoniae


organism_name: Enterobacter hormaechei


organism_name: Klebsiella quasivariicola


organism_name: Enterobacter cloacae


organism_name: Escherichia coli


organism_name: Achromobacter ruhlandii


organism_name: Neisseria gonorrhoeae


organism_name: Streptococcus pyogenes


organism_name: Streptococcus pneumoniae


organism_name: Streptococcus agalactiae


organism_name: Corynebacterium diphtheriae


organism_name: Vibrio cholerae O1


annotation_name: Annotation submitted by University of East Anglia

annotation_provider: University of East Anglia

asm_submitter: University of East Anglia

excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Limisphaerales bacterium


asm_submitter: The University of Queensland

excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

group: archaea

organism_name: Candidatus Pacearchaeota archaeon


organism_name: Ignavibacteriaceae bacterium


organism_name: Streptosporangiaceae bacterium


organism_name: Candidatus Kryptoniota bacterium


organism_name: Solirubrobacteraceae bacterium


organism_name: Thermoplasmataceae archaeon


organism_name: Cyclobacteriaceae bacterium


organism_name: Candidatus Omnitrophota bacterium


organism_name: Spirochaetota bacterium


organism_name: Candidatus Dormibacteria bacterium


organism_name: Thiobacillaceae bacterium


organism_name: Candidatus Hodarchaeales archaeon


organism_name: Nitrososphaerales archaeon


organism_name: Gammaproteobacteria bacterium


organism_name: Thermodesulfovibrionales bacterium


organism_name: Vibrio cholerae O1


organism_name: Ktedonobacterales bacterium


organism_name: Desulfobacterales bacterium


organism_name: Phycisphaerae bacterium


organism_name: Candidatus Acidiferrales bacterium


organism_name: Bacilli bacterium


organism_name: Ignavibacteriaceae bacterium


organism_name: Longimicrobiales bacterium


organism_name: Limisphaerales bacterium


organism_name: Thermoplasmataceae archaeon


organism_name: Acidimicrobiales bacterium


organism_name: Bacteroidales bacterium


organism_name: Nitrospirota bacterium


organism_name: Microgenomates group bacterium


organism_name: Opitutaceae bacterium


organism_name: Candidatus Limnocylindrales bacterium


organism_name: Thermoplasmata archaeon


organism_name: Candidatus Nanoarchaeia archaeon


organism_name: Cyclobacteriaceae bacterium


excluded_from_refseq: derived from metagenome

organism_name: Rhizomicrobium sp.


organism_name: Candidatus Woesearchaeota archaeon


organism_name: Desulfocapsaceae bacterium


organism_name: Nitrososphaerales archaeon


organism_name: Anaerolineales bacterium


organism_name: Gemmatimonadaceae bacterium


organism_name: Acidobacteriota bacterium


organism_name: Chitinivibrionales bacterium


organism_name: Terriglobia bacterium


organism_name: Thermoanaerobaculia bacterium


organism_name: Candidatus Acidiferrales bacterium


organism_name: Binataceae bacterium (SeqCode)


organism_name: Streptosporangiaceae bacterium


organism_name: Candidatus Kryptoniota bacterium


organism_name: Vibrio cholerae O1


organism_name: Ignavibacteriaceae bacterium


organism_name: Ferrovibrionaceae bacterium


organism_name: Candidatus Pacearchaeota archaeon


organism_name: Thermoplasmataceae archaeon


organism_name: Allostellaceae bacterium


organism_name: Terriglobales bacterium


organism_name: Dehalococcoidia bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Rhizomicrobium sp.


organism_name: Candidatus Woesearchaeota archaeon


organism_name: Candidatus Bathyarchaeia archaeon


organism_name: Polyangia bacterium


organism_name: Candidatus Anstonellales archaeon


organism_name: Terriglobia bacterium


organism_name: Desulfobacterales bacterium


organism_name: Desulfurivibrionaceae bacterium


organism_name: Candidatus Sysuiplasmataceae archaeon


organism_name: Vibrio cholerae O1


organism_name: Bacillota bacterium


organism_name: Bacteroidales bacterium


organism_name: Desulfocapsaceae bacterium


organism_name: Candidatus Sulfidibacterium sp.


organism_name: Candidatus Kryptoniota bacterium


organism_name: Gallionellaceae bacterium


organism_name: Acidobacteriota bacterium


organism_name: Terriglobales bacterium


organism_name: Thermodesulfovibrionales bacterium


organism_name: Trebonia sp.


organism_name: Candidatus Woesearchaeota archaeon


organism_name: Spirochaetia bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Gemmatimonadaceae bacterium


organism_name: Ignavibacteriaceae bacterium


organism_name: Candidatus Pacearchaeota archaeon


organism_name: Vibrio cholerae O1


organism_name: Occallatibacter sp.


organism_name: Allostellaceae bacterium


organism_name: Anaerolineales bacterium


organism_name: Candidatus Bathyarchaeia archaeon


organism_name: Caproicibacter sp.


asm_submitter: Hospital Universitario 12 de Octubre

organism_name: Escherichia coli


organism_name: Clostridium thailandense


asm_submitter: College of Dairy Science, Kamdhenu University, Amreli

organism_name: Enterobacter pasteurii


asm_submitter: Monash University

organism_name: Candidatus Limnocylindrales bacterium


organism_name: Chloroflexota bacterium


organism_name: Vicinamibacterales bacterium


organism_name: Streptomyces sp.


organism_name: Anaerolineae bacterium


organism_name: Burkholderiales bacterium


organism_name: Arthrobacter sp.


organism_name: Methyloceanibacter sp.


organism_name: Candidatus Nitrosocosmicus sp.


asm_submitter: National Center for Biotechnology Information

organism_name: Vibrio cholerae O1


organism_name: Chitinophagaceae bacterium


organism_name: bacterium


organism_name: Usitatibacter sp.


organism_name: Microcoleus sp.


organism_name: Aestuariivirga sp.


organism_name: Candidatus Zixiibacteriota bacterium


organism_name: Miltoncostaeaceae bacterium


organism_name: Chromatiales bacterium


asm_submitter: National Institute for Communicable Disease Control and Prevention, China CDC

organism_name: Aeromonas hydrophila


organism_name: Allosphingosinicella sp.


asm_submitter: KAMDHENU UNIVERSITY

organism_name: Staphylococcus epidermidis


asm_submitter: Bangladesh Agricultural University, Mymensingh

organism_name: Enterococcus faecium


organism_name: Citrobacter freundii


asm_submitter: Universidad de Buenos Aires

organism_name: Staphylococcus aureus


organism_name: Serratia marcescens


organism_name: Acinetobacter baumannii


organism_name: Vibrio cholerae O1


organism_name: Aeromonas caviae


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Octadecabacter sp.


organism_name: Paraglaciecola sp.


organism_name: Colwellia sp.


organism_name: Gammaproteobacteria bacterium


organism_name: Polaribacter sp.


organism_name: Flavobacterium sp.


organism_name: Glaciecola sp.


organism_name: Marivirga sp.


organism_name: Loktanella salsilacus


organism_name: Porticoccaceae bacterium


organism_name: Arenicella sp.


organism_name: Lentimonas sp.


organism_name: Pseudoalteromonas tetraodonis


organism_name: Reinekea sp.


organism_name: Olleya marilimosa


organism_name: Pseudoalteromonas distincta


organism_name: Oceanospirillaceae bacterium


organism_name: Sulfitobacter litoralis


organism_name: Paraperlucidibaca sp.


organism_name: Planktomarina sp.


organism_name: Natrialbaceae archaeon


organism_name: Natronomonas sp.


organism_name: Candidatus Nanohaloarchaea archaeon


organism_name: Flavobacteriales bacterium


organism_name: Colwellia sp.


organism_name: Alteromonadaceae bacterium


organism_name: Polaribacter sp.


organism_name: Vibrio cholerae O1


organism_name: Candidatus Midichloriaceae bacterium


organism_name: Aquiluna sp.


organism_name: Pseudomonadales bacterium


organism_name: Porticoccaceae bacterium


organism_name: Woeseiaceae bacterium


organism_name: Candidatus Poriferisodalaceae bacterium


organism_name: Candidatus Poseidoniaceae archaeon


organism_name: Candidatus Thalassarchaeaceae archaeon


organism_name: Oceanospirillaceae bacterium


organism_name: Salibacteraceae bacterium


organism_name: Candidatus Azotimanducaceae bacterium


organism_name: Candidatus Arcticimaribacter sp.


organism_name: Gammaproteobacteria bacterium


organism_name: Flavobacteriaceae bacterium


organism_name: Porticoccus sp.


organism_name: Paracoccaceae bacterium


organism_name: Vibrio cholerae O1


organism_name: Candidatus Marivariicella framensis


organism_name: Methylophilaceae bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Streptococcus pyogenes


asm_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

organism_name: Sphaerospermopsis kisseleviana


organism_name: Neisseria gonorrhoeae


asm_submitter: Facultad de Quimica, Universidad Nacional Autonoma de Mexico

organism_name: Streptomyces tunisiensis


organism_name: Oleispira sp.


organism_name: Psychromonas sp.


organism_name: Paraglaciecola sp.


organism_name: Zhongshania sp.


organism_name: Pseudoalteromonas tetraodonis

refseq_category: reference genome


organism_name: Marinomonas primoryensis


organism_name: Gemmatimonadaceae bacterium


organism_name: Candidatus Limnocylindrales bacterium


organism_name: Burkholderiaceae bacterium


organism_name: Candidatus Rokuibacteriota bacterium


organism_name: Pyrinomonadaceae bacterium


organism_name: Edaphovirga cremea


organism_name: Saprospiraceae bacterium


organism_name: Vibrio cholerae O1


organism_name: Burkholderiales bacterium


organism_name: Xanthobacteraceae bacterium


organism_name: Nitrospiraceae bacterium


organism_name: Nitrosarchaeum sp.


organism_name: Actinomycetota bacterium


organism_name: Rhodococcus erythropolis


organism_name: Gemmatimonadota bacterium


organism_name: Candidatus Limnocylindria bacterium


organism_name: Nitrosospira sp.


organism_name: Bauldia sp.


organism_name: Chitinophagaceae bacterium


organism_name: Anaerolineales bacterium


organism_name: Binatia bacterium (SeqCode)


organism_name: Planctomycetaceae bacterium


organism_name: Pseudolysinimonas sp.


asm_submitter: zhejiang university

organism_name: Streptomyces griseobrunneus


organism_name: Vibrio cholerae O1


asm_submitter: McMaster University

organism_name: Paenibacillus sp. M2


organism_name: Candidatus Eiseniibacteriota bacterium


organism_name: Hyphomicrobiaceae bacterium


asm_submitter: Institute of Environmental Science and Research

organism_name: Escherichia coli


organism_name: Dehalococcoidia bacterium


organism_name: Actinomycetota bacterium


organism_name: Mycobacteriales bacterium


organism_name: Candidatus Limnocylindrales bacterium


organism_name: Tepidiformaceae bacterium


organism_name: Burkholderiales bacterium


organism_name: Nitrosospira sp.


organism_name: Acidiferrobacterales bacterium


organism_name: Nitrospira sp.


organism_name: Methyloglobulus sp.


organism_name: Gaiellaceae bacterium


organism_name: Rhodoferax sp.


organism_name: Nitrososphaeraceae archaeon


organism_name: Acidimicrobiia bacterium


organism_name: Gemmatimonadaceae bacterium


organism_name: Terriglobales bacterium


organism_name: Thermoanaerobaculia bacterium


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Stenotrophomonas rhizophila


organism_name: Specibacter sp.


organism_name: Nitrososphaera sp.


organism_name: Candidatus Limnocylindrales bacterium


organism_name: Gaiella sp.


organism_name: Casimicrobiaceae bacterium


organism_name: Candidatus Limnocylindria bacterium


organism_name: Arenimonas sp.


organism_name: Chitinophagaceae bacterium


organism_name: Acidobacteriota bacterium


organism_name: Sphingomicrobium sp.


organism_name: Burkholderiales bacterium


organism_name: Pyrinomonadaceae bacterium


organism_name: Paeniglutamicibacter sp.


organism_name: Conyzicola sp.


organism_name: Arthrobacter sp.


organism_name: Xanthobacteraceae bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Terriglobia bacterium


organism_name: Actinomycetota bacterium


organism_name: Usitatibacteraceae bacterium


organism_name: Gemmatimonadales bacterium


organism_name: Polaromonas sp.


organism_name: Candidatus Nitrosocosmicus sp.


organism_name: Candidatus Limnocylindria bacterium


organism_name: Lysobacteraceae bacterium


organism_name: Micropepsaceae bacterium


organism_name: Ramlibacter sp.


organism_name: Vibrio cholerae O1


organism_name: Chthonomonadales bacterium


organism_name: Stenotrophomonas sp.


organism_name: Nitrospiraceae bacterium


organism_name: Mycobacteriales bacterium


organism_name: Acidiferrobacterales bacterium


organism_name: Saprospiraceae bacterium


organism_name: Solirubrobacterales bacterium


organism_name: Streptomyces sp.


organism_name: Allosphingosinicella sp.


organism_name: Candidatus Krumholzibacteriia bacterium


organism_name: Dehalococcoidia bacterium


organism_name: Candidatus Nitrosocosmicus sp.


organism_name: Nitrososphaeraceae archaeon


organism_name: Pyrinomonadaceae bacterium


organism_name: Methylibium sp.


organism_name: Vicinamibacterales bacterium


organism_name: Burkholderiales bacterium


organism_name: Anaerolineae bacterium


organism_name: Sphingomicrobium sp.


organism_name: Candidatus Limnocylindrales bacterium


organism_name: Casimicrobiaceae bacterium


organism_name: Serratia sp. (in: enterobacteria)


organism_name: Actinomycetota bacterium


organism_name: Pararhizobium sp.


organism_name: Thermoanaerobaculia bacterium


organism_name: Candidatus Limnocylindria bacterium


organism_name: Nitrospira sp.


asm_submitter: Longjiang Environmental Protection Group Co., Ltd.

organism_name: Peribacillus sp. S4


asm_name: Kle_pne IVRI_FBI_608

asm_submitter: Indian Veterinary Research Institute

assembly_level: Chromosome

organism_name: Klebsiella pneumoniae


organism_name: Dehalococcoidia bacterium


organism_name: Phycisphaerae bacterium


asm_name: Kle_pne IVRI_FBI_623


organism_name: Usitatibacter sp.


organism_name: Hyphomicrobiaceae bacterium


organism_name: Candidatus Eiseniibacteriota bacterium


organism_name: Anaerolineales bacterium


organism_name: Gemmatimonadales bacterium


organism_name: Polaromonas sp.


organism_name: Burkholderiales bacterium


organism_name: Nitrosospira sp.


organism_name: Candidatus Limnocylindrales bacterium


organism_name: Vicinamibacterales bacterium


organism_name: Gaiellaceae bacterium


organism_name: Actinomycetota bacterium


organism_name: Nocardioides sp.


organism_name: Chitinophagaceae bacterium


organism_name: Casimicrobiaceae bacterium


organism_name: Ilumatobacteraceae bacterium


organism_name: Dehalococcoidia bacterium


organism_name: Desulfuromonadaceae bacterium


organism_name: Gemmatimonadaceae bacterium


organism_name: Streptomyces sp.


organism_name: Variovorax sp.


organism_name: Thiobacillaceae bacterium


organism_name: Solirubrobacterales bacterium


organism_name: Devosia sp.


organism_name: Hyphomicrobiaceae bacterium


organism_name: Solirubrobacteraceae bacterium


organism_name: Phycisphaerae bacterium


organism_name: Burkholderiales bacterium


organism_name: Novosphingobium sp.


organism_name: Candidatus Limnocylindria bacterium


organism_name: Gaiellaceae bacterium


organism_name: Candidatus Limnocylindrales bacterium


organism_name: Paenarthrobacter sp.


organism_name: Acidimicrobiia bacterium


organism_name: Psychrobacillus psychrotolerans


organism_name: Mycetocola sp.


organism_name: Gemmatimonadaceae bacterium


organism_name: Polaromonas sp.


organism_name: Thermoanaerobaculia bacterium


organism_name: Burkholderiaceae bacterium


organism_name: Vicinamibacterales bacterium


organism_name: Anaerolineales bacterium


organism_name: Casimicrobiaceae bacterium


organism_name: Nitrospiraceae bacterium


organism_name: Arthrobacter sp.


organism_name: Pirellulales bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Methyloligellaceae bacterium


organism_name: Miltoncostaeaceae bacterium


organism_name: Burkholderiales bacterium


organism_name: Mycobacteriales bacterium


organism_name: Gemmatimonadales bacterium


organism_name: Sulfurifustaceae bacterium


organism_name: Candidatus Limnocylindrales bacterium


organism_name: Candidatus Limnocylindria bacterium


asm_submitter: Institute of Oceanology, Chinese Academy of Sciences

organism_name: Bacillus thuringiensis


organism_name: Pseudoalteromonas tetraodonis


organism_name: Arthrobacter pityocampae


annotation_name: Annotation submitted by Bielefeld University

annotation_provider: Bielefeld University

asm_submitter: Bielefeld University

organism_name: Corynebacterium sp. LaCa97


organism_name: Corynebacterium sp. LaCa101


organism_name: Corynebacterium sp. LaCa191


organism_name: Vibrio cholerae O1


organism_name: Corynebacterium sp. LaCa54


organism_name: Corynebacterium sp. LaCa78


organism_name: Corynebacterium sp. LaCa7


asm_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences

organism_name: Acinetobacter indicus


organism_name: Acinetobacter pseudolwoffii


organism_name: Acinetobacter gandensis


organism_name: Corynebacterium sp. LaCa117


organism_name: Corynebacterium sp. LaCa222


organism_name: Corynebacterium sp. LaCa116


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


organism_name: Acinetobacter towneri


organism_name: Corynebacterium sp. LaCa142


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


asm_submitter: National Center for Biotechnology Information

organism_name: Neisseria meningitidis


asm_submitter: Sun Yat-sen University

infraspecific_name: strain=WXY

organism_name: Lactobacillus johnsonii


asm_submitter: City University of Hong Kong

organism_name: Bacillus tropicus


asm_submitter: Technische Universitaet Muenchen

infraspecific_name: strain=DSM 111017

organism_name: Pseudolactococcus paracarnosus

relation_to_type_material: assembly from type material


asm_submitter: Universidade Federal de Lavras

organism_name: Bradyrhizobium sp. UFLA01-814


asm_submitter: Robert Koch Institute

organism_name: Brucella melitensis


asm_submitter: Institute of Microbiology, Czech Academy of Sciences

organism_name: Endomicrobiia bacterium


asm_submitter: Rush University Medical Center

organism_name: Streptomyces gramineus


asm_submitter: University of Calcutta

organism_name: Enterobacter bugandensis


organism_name: Cytophagales bacterium


organism_name: Fimbriimonadales bacterium


organism_name: Aggregatilineales bacterium


organism_name: Termitinemataceae bacterium


organism_name: Bacteroidales bacterium


organism_name: Fimbriimonadaceae bacterium


organism_name: Cyanobacteriota bacterium


organism_name: Armatimonadota bacterium


organism_name: Spirochaetales bacterium


organism_name: Thermodesulfovibrionales bacterium


organism_name: Chloroflexaceae bacterium


organism_name: Chloracidobacterium sp.


organism_name: Acetobacteraceae bacterium


organism_name: Gemmataceae bacterium


organism_name: Roseiflexus sp.


organism_name: Sphingomonadaceae bacterium


organism_name: Chloroherpetonaceae bacterium


organism_name: Verrucomicrobiia bacterium


organism_name: Anaerolinea sp.


organism_name: Pseudanabaenaceae cyanobacterium


organism_name: Anaerolineae bacterium


asm_submitter: GUANGXI MINZU UNIVERSITY

organism_name: Halobacillus rhizosphaerae


asm_submitter: Hajee Mohammad Danesh Science and Technology University

organism_name: Citrobacter sp. HSTU-ABk15


asm_submitter: University of Sevilla, Spain

organism_name: Halonotius sp. F2-221B


asm_submitter: Islamic University

organism_name: Escherichia coli


asm_submitter: National Institute for Communicable Disease Control and Prevention

organism_name: Streptococcus suis


asm_submitter: Institute of Microbiology, Veterinary University Vienna


organism_name: Citrobacter freundii


organism_name: Enterobacter asburiae


organism_name: Klebsiella pneumoniae


organism_name: Enterobacter bugandensis


organism_name: Enterobacter mori


excluded_from_refseq: contaminated


asm_submitter: Jahangirnagar University


asm_submitter: Universidad Complutense de Madrid


asm_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


asm_submitter: Shanghai Jiao Tong Uniersity

organism_name: Salmonella enterica


asm_submitter: Hemchandracharya North Gujarat University

organism_name: Shewanella algae


asm_submitter: National Forensic Sciences University Gandhinagar


asm_submitter: The First Affiliated Hospital of Nanchang University

organism_name: Staphylococcus aureus


asm_submitter: Shandong University at Weihai

organism_name: Winogradskyella sp. A3E31


asm_submitter: University of Valencia

organism_name: Vibrio vulnificus


asm_submitter: Beijing Institute of Microbiology and Epidemiology

infraspecific_name: strain=TIGMIC

organism_name: Rickettsia conorii subsp. raoultii


asm_submitter: Chung-Ang university

excluded_from_refseq: many frameshifted proteins

organism_name: Staphylococcus equorum


organism_name: Staphylococcus nepalensis


organism_name: Staphylococcus pseudoxylosus


organism_name: Staphylococcus shinii


organism_name: Staphylococcus saprophyticus


organism_name: Staphylococcus xylosus


organism_name: Staphylococcus sp. Mo2-7


organism_name: Staphylococcus sp. 2S1


organism_name: Staphylococcus sp. 50Mo3-1


organism_name: Staphylococcus sp. Mo2-1


asm_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory

organism_name: Leptospira borgpetersenii


organism_name: Leptospira kirschneri


organism_name: Leptospira interrogans


asm_submitter: Academy of Military Medical Sciences

organism_name: Yersinia pestis


asm_submitter: Nanyang Normal University

organism_name: Sphingobium sp. R-7


asm_submitter: Robert Koch Institute

organism_name: Brucella melitensis


asm_submitter: Sao Paulo State University-FCAVUnesp

organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


asm_submitter: Kansas State University

organism_name: Pseudomonadota bacterium


asm_submitter: Northeast Forestry University

organism_name: Halomonas sp. A29


organism_name: Actinomycetota bacterium


organism_name: Candidatus Methylomirabilota bacterium


organism_name: Thermoproteota archaeon


organism_name: Acidobacteriota bacterium


organism_name: Chloroflexota bacterium


organism_name: bacterium


organism_name: Gemmatimonadota bacterium


organism_name: Thermodesulfobacteriota bacterium


organism_name: Verrucomicrobiota bacterium


organism_name: Nitrospirota bacterium


organism_name: Bacteroidota bacterium


organism_name: Myxococcota bacterium


organism_name: Candidatus Tectimicrobiota bacterium


organism_name: Yersinia pestis


organism_name: Candidatus Dormiibacterota bacterium


organism_name: Pseudomonadota bacterium


organism_name: Bacillati bacterium


organism_name: Actinomycetota bacterium


organism_name: Halobacteriota archaeon


organism_name: Thermoproteota archaeon


organism_name: Acidobacteriota bacterium


organism_name: Vulcanimicrobiota bacterium


organism_name: bacterium


organism_name: Gemmatimonadota bacterium


organism_name: Candidatus Methylomirabilota bacterium


organism_name: Chloroflexota bacterium


organism_name: Verrucomicrobiota bacterium


organism_name: Thermodesulfobacteriota bacterium


organism_name: Myxococcota bacterium


organism_name: Nitrospirota bacterium


asm_submitter: The University of Queensland

organism_name: Fidelibacterota bacterium


asm_submitter: Shaoxing University

organism_name: Yersinia ruckeri


asm_submitter: SUNY Plattsburgh

organism_name: Chryseobacterium scophthalmum


asm_submitter: Xinjiang Academy of Agricultural Sciences

organism_name: Pseudomonas chlororaphis subsp. aurantiaca


asm_submitter: Southwest University

organism_name: Bacillus velezensis


asm_submitter: Capital Institute of Pediatrics

organism_name: Klebsiella pneumoniae


asm_submitter: Nanjing Agricultural University

organism_name: Dehalococcoides mccartyi


asm_submitter: guizhou university

organism_name: Salinicoccus sp. HZC-1


asm_submitter: Institut Pasteur

infraspecific_name: strain=Mane

organism_name: Leptospira sp. 'Mane'


asm_submitter: Langfang Normal University

organism_name: Gordonia sp. SND2


asm_submitter: Savitribai Phule Pune University

organism_name: Achromobacter sp. M1


organism_name: Stenotrophomonas sp. LGBM10


asm_submitter: Institute of Microbiology and Epizootics

organism_name: Pasteurella multocida


asm_submitter: Microbial Genomics Reference Laboratory, ICPMR

organism_name: Bordetella pertussis


asm_submitter: Bursa Uludag University, Faculty of Veterinary Medicine

organism_name: Vagococcus salmoninarum


asm_submitter: Public Health Ontario


organism_name: Escherichia coli


asm_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS

organism_name: Luteolibacter sp. AS25


organism_name: Roseibacillus persicicus


organism_name: Mariniflexile sp. AS56


organism_name: Algibacter lectus


organism_name: Algibacter sp. AS12


asm_submitter: Bucknell University

organism_name: Paracoccus sp. ME4


asm_submitter: Shandong Univerity

organism_name: Hyphococcus formosus


asm_submitter: SHANDONG UNIVERSITY

organism_name: Pseudoxanthomonas mexicana


asm_submitter: UiT The Arctic University of Norway

organism_name: Vibrio cholerae C6706


asm_submitter: Graz University of Technology

organism_name: Peribacillus frigoritolerans


asm_submitter: ZHUHAI PEPOLE'S HOSPITAL

organism_name: Proteus mirabilis


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


asm_submitter: UFRJ

organism_name: Arthrobacter sp. LAPM80


asm_submitter: Chattogram Veterinary and Animal Sciences University

organism_name: Pediococcus pentosaceus


organism_name: Lactiplantibacillus argentoratensis


organism_name: Lactiplantibacillus plantarum


asm_submitter: National Center for Biotechnology Information

organism_name: Vibrio cholerae O1


organism_name: Pseudomonas aeruginosa


asm_submitter: PulseNet Next Generation Subtyping Methods Unit

organism_name: Cronobacter sakazakii


asm_submitter: CDC

organism_name: Salmonella enterica


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


organism_name: Neisseria meningitidis


asm_submitter: FDA

organism_name: Enterococcus faecalis


organism_name: Enterococcus faecium


isolate: WGS of M53920


isolate: WGS of M53921


isolate: WGS of M53929


isolate: WGS of M53933


isolate: NM-KZ


isolate: Neisseria meningitidis


organism_name: Enterococcus hirae


asm_submitter: FDA Center for Food Safety and Applied Nutrition

organism_name: Listeria innocua


organism_name: Citrobacter freundii


asm_submitter: Indian Institute Of Chemical biology

organism_name: Scytonema millei VB511283_2


asm_submitter: Public Health England


organism_name: Campylobacter coli


organism_name: Salmonella enterica subsp. enterica


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Vibrio parahaemolyticus


organism_name: Streptococcus pyogenes


organism_name: Salmonella enterica subsp. enterica serovar Kiambu


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


asm_submitter: KU Leuven

organism_name: Staphylococcus aureus


infraspecific_name: strain=MSSA-JAR


infraspecific_name: strain=MRSA-COL


organism_name: Neisseria gonorrhoeae


organism_name: Salmonella enterica


asm_submitter: Kansas State University

organism_name: Actinomycetota bacterium


organism_name: Candidatus Methylomirabilota bacterium


organism_name: Campylobacter jejuni


organism_name: Planctomycetota bacterium


organism_name: Thermodesulfobacteriota bacterium


organism_name: Verrucomicrobiota bacterium


organism_name: Thermoproteota archaeon


organism_name: Gemmatimonadota bacterium


organism_name: Pseudomonadota bacterium


asm_submitter: Army Medical University

organism_name: Pseudomonas aeruginosa


organism_name: Listeria monocytogenes


organism_name: Enterobacter hormaechei


organism_name: Acinetobacter baumannii


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Klebsiella pneumoniae


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


asm_submitter: Zhejiang University

organism_name: Clostridioides difficile


excluded_from_refseq: fragmented assembly; from large multi-isolate project


asm_submitter: King Abdullah University of Science and Technology (KAUST)

organism_name: Candidatus Micrarchaeia archaeon


organism_name: Rhodothalassiaceae bacterium


organism_name: Anaerolineae bacterium


organism_name: Thermoanaerobaculia bacterium


organism_name: Thermodesulfobacteriota bacterium


organism_name: Dehalococcoidia bacterium


organism_name: Flavobacteriales bacterium


organism_name: Mariprofundus sp.


organism_name: Mariprofundaceae bacterium


organism_name: Phycisphaerae bacterium


organism_name: Paracoccaceae bacterium


organism_name: Saprospiraceae bacterium


organism_name: Binatia bacterium (SeqCode)


organism_name: Candidatus Nanoarchaeia archaeon


organism_name: Minisyncoccota bacterium


organism_name: Candidatus Dojkabacteria bacterium


organism_name: Anaerolineales bacterium


organism_name: Candidatus Zixiibacteriota bacterium


organism_name: Desulfobacterales bacterium


organism_name: Nitrosopumilaceae archaeon


organism_name: Nitrospirota bacterium


organism_name: Thermodesulfobacteriota bacterium


organism_name: Anaerolineae bacterium


organism_name: Kiloniellaceae bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Leptospirillia bacterium


organism_name: Candidatus Krumholzibacteriia bacterium


organism_name: Candidatus Nitrosopumilus sp.


organism_name: Myxococcota bacterium


organism_name: Nitrospinales bacterium


organism_name: Binatia bacterium (SeqCode)


organism_name: Phycisphaerae bacterium


organism_name: Planctomycetota bacterium


organism_name: Gaiellales bacterium


organism_name: Acidimicrobiia bacterium


organism_name: Nitrospinaceae bacterium


organism_name: Nitrospinota bacterium


organism_name: Dehalococcoidia bacterium


organism_name: Clostridioides difficile


organism_name: Parvularculaceae bacterium


organism_name: Thermoplasmata archaeon


organism_name: Gemmatimonadota bacterium


organism_name: Nitrosopumilaceae archaeon


organism_name: Methylomirabilales bacterium (SeqCode)


organism_name: Acidiferrobacterales bacterium


organism_name: Sphingomonadales bacterium


organism_name: Woeseia sp.


organism_name: Gemmatimonadales bacterium


organism_name: Binatia bacterium (SeqCode)


organism_name: Candidatus Nanoarchaeia archaeon


organism_name: Rhodothermales bacterium


organism_name: Thermoanaerobaculia bacterium


organism_name: Paracoccaceae bacterium


organism_name: Minisyncoccia bacterium


organism_name: Terriglobia bacterium


organism_name: Candidatus Methylomirabilia bacterium


organism_name: Nitrospinota bacterium


organism_name: Acidimicrobiales bacterium


organism_name: Mariprofundus sp.


organism_name: Nitrospiria bacterium


organism_name: bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Acidimicrobiia bacterium


organism_name: Woeseiaceae bacterium


organism_name: Methyloligellaceae bacterium


organism_name: Anaerolineae bacterium


organism_name: Rhodospirillales bacterium


organism_name: Anaerolineales bacterium


organism_name: Mariprofundaceae bacterium


organism_name: Candidatus Zixiibacteriota bacterium


organism_name: Planctomycetota bacterium


organism_name: Candidatus Krumholzibacteriia bacterium


organism_name: Thiogranum sp.


organism_name: Phycisphaerae bacterium


organism_name: Thermodesulfobacteriota bacterium


organism_name: Paracoccaceae bacterium


organism_name: Candidatus Geothermarchaeales archaeon


organism_name: Nitrospinales bacterium


organism_name: Candidatus Nanoarchaeia archaeon


organism_name: Calditrichia bacterium


organism_name: Candidatus Aenigmatarchaeota archaeon


organism_name: Salmonella enterica


organism_name: Candidatus Aminicenantales bacterium


organism_name: Minisyncoccia bacterium


organism_name: Acidobacteriota bacterium


organism_name: bacterium


organism_name: Candidatus Scalinduaceae bacterium


organism_name: Gemmatimonadota bacterium


organism_name: Waddliaceae bacterium


organism_name: Terriglobia bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Binatia bacterium (SeqCode)


organism_name: Candidatus Omnitrophota bacterium


organism_name: Planctomycetota bacterium


organism_name: Nitrospinales bacterium


organism_name: Myxococcota bacterium


organism_name: Thermodesulfobacteriota bacterium


organism_name: Candidatus Scalindua sp.


organism_name: Methylomirabilales bacterium (SeqCode)


organism_name: Planctomycetaceae bacterium


organism_name: Nitrospinota bacterium


organism_name: Gemmatimonadales bacterium


organism_name: Rhodospirillales bacterium


organism_name: Acidobacteriota bacterium


organism_name: Kiloniellaceae bacterium


organism_name: Nitrospiria bacterium


organism_name: Acidiferrobacterales bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Terriglobia bacterium


organism_name: Candidatus Nitrosopumilus sp.


organism_name: bacterium


organism_name: Candidatus Bathyarchaeia archaeon


organism_name: Phycisphaerae bacterium


organism_name: Bacteroidota bacterium


organism_name: Thermoplasmata archaeon


organism_name: Armatimonadota bacterium


organism_name: Candidatus Methylomirabilia bacterium


organism_name: Methylomirabilales bacterium (SeqCode)


organism_name: Candidatus Heimdallarchaeota archaeon


organism_name: Candidatus Thorarchaeota archaeon


organism_name: Hydrothermarchaeales archaeon (SeqCode)


organism_name: Dehalococcoidia bacterium


organism_name: Anaerolineae bacterium


organism_name: Planctomycetota bacterium


organism_name: Binatia bacterium (SeqCode)


organism_name: Thermodesulfobacteriota bacterium


organism_name: Bipolaricaulia bacterium (SeqCode)


organism_name: Gemmatimonadota bacterium


organism_name: bacterium


organism_name: Nitrospinota bacterium


organism_name: Candidatus Brocadiales bacterium


organism_name: Candidatus Geothermarchaeales archaeon


organism_name: Acidobacteriota bacterium


organism_name: Candidatus Methylomirabilia bacterium


organism_name: Candidatus Methanofastidiosia archaeon


organism_name: Thermoplasmata archaeon


organism_name: Candidatus Zixiibacteriota bacterium


organism_name: Candidatus Omnitrophota bacterium


organism_name: Anaerolineales bacterium


organism_name: Candidatus Heimdallarchaeota archaeon


organism_name: Hydrothermarchaeales archaeon (SeqCode)


organism_name: Acidiferrobacterales bacterium


organism_name: Nitrospiria bacterium


organism_name: Candidatus Scalinduaceae bacterium


organism_name: Nitrososphaerales archaeon


organism_name: Nitrospiraceae bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Terriglobia bacterium


organism_name: Woeseiaceae bacterium


organism_name: Acidobacteriota bacterium


organism_name: Methylomirabilales bacterium (SeqCode)


organism_name: Candidatus Brocadiales bacterium


organism_name: Anaerolineae bacterium


organism_name: Dehalococcoidia bacterium


organism_name: Acidimicrobiia bacterium


organism_name: Kiloniellales bacterium


organism_name: Candidatus Geothermarchaeales archaeon


organism_name: Thermoplasmata archaeon


organism_name: Candidatus Bathyarchaeia archaeon


organism_name: Kiloniellaceae bacterium


organism_name: Nitrosopumilaceae archaeon


organism_name: Woeseia sp.


organism_name: Candidatus Zixiibacteriota bacterium


organism_name: Nitrososphaerales archaeon


organism_name: Acidiferrobacterales bacterium


organism_name: Candidatus Aenigmatarchaeota archaeon


organism_name: Dehalococcoidales bacterium


organism_name: Candidatus Methanofastidiosia archaeon


organism_name: Phycisphaerae bacterium


organism_name: Sedimentisphaerales bacterium


organism_name: Candidatus Aminicenantales bacterium


organism_name: Candidatus Poribacteria bacterium


organism_name: bacterium


organism_name: Minisyncoccales bacterium


organism_name: Anaerolineae bacterium


organism_name: Candidatus Aminicenantia bacterium


organism_name: Armatimonadota bacterium


organism_name: Candidatus Hydrothermarchaeota archaeon


organism_name: Bipolaricaulia bacterium (SeqCode)


organism_name: Candidatus Bathyarchaeia archaeon


organism_name: Methanosarcinales archaeon


organism_name: Thermodesulfobacteriota bacterium


organism_name: Gemmatimonadales bacterium


organism_name: Thermoplasmata archaeon


organism_name: Nitrospinota bacterium


organism_name: Nitrososphaerales archaeon


organism_name: Candidatus Glassiibacteriota bacterium


organism_name: Dehalococcoidales bacterium


organism_name: Candidatus Heimdallarchaeota archaeon


organism_name: Hadarchaeaceae archaeon (SeqCode)


organism_name: Hydrothermarchaeales archaeon (SeqCode)


asm_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


excluded_from_refseq: fragmented assembly


asm_submitter: Agricultural College and research Institute, Coimbatore

excluded_from_refseq: unverified source organism

organism_name: Rhizobium mayense


asm_submitter: Enze Hospital

infraspecific_name: strain=YZY

organism_name: Elizabethkingia occulta


organism_name: Methylorubrum thiocyanatum


infraspecific_name: strain=ZSQ


infraspecific_name: strain=CBZ

organism_name: Elizabethkingia bruuniana


infraspecific_name: strain=DXL


asm_submitter: Shandong University at Weihai

organism_name: Winogradskyella sp. A2


organism_name: Yoonia sp. SDW83-1


organism_name: Yoonia sp. R2-816


asm_submitter: FDA/CFSAN

organism_name: Listeria monocytogenes


asm_submitter: National Center for Biotechnology Information

organism_name: Klebsiella pneumoniae


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


asm_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI

infraspecific_name: strain=MRD-NRLLH

organism_name: Streptococcus salivarius


infraspecific_name: strain=MRD-KRBY


asm_submitter: Quadram Institute Bioscience

organism_name: Bifidobacterium dentium


asm_submitter: Department of Genetics and Animal Breeding, Chattogram Veterinary and Animal Sciences University

organism_name: Escherichia coli


organism_name: Bifidobacterium longum


asm_submitter: institute of laboratory animal sciences

organism_name: Staphylococcus aureus


organism_name: Bifidobacterium adolescentis


organism_name: Bifidobacterium bifidum


asm_submitter: Jilin university

organism_name: Yersinia enterocolitica


asm_submitter: Saint-Petersburg Pasteur Institut

organism_name: Coxiella burnetii


asm_submitter: National Dairy Research Institute, Karnal

organism_name: Limosilactobacillus reuteri


asm_submitter: PSGVP Mandals SI Patil Arts GB Patel Science and STKVS Commerce College

organism_name: Sinorhizobium meliloti


organism_name: Bifidobacterium longum subsp. infantis


asm_submitter: Zhejiang University of Technology

infraspecific_name: strain=DSM 43850

organism_name: Kutzneria viridogrisea


asm_submitter: IBPM PNCBR RAS

organism_name: Lysobacter capsici


asm_submitter: Huashan Hospital

organism_name: Streptococcus anginosus


asm_submitter: University of Galway

organism_name: Acinetobacter johnsonii


organism_name: Streptococcus agalactiae


asm_submitter: University of Central Punjab, Lahore

organism_name: Bacillus paranthracis


asm_submitter: Jiangxi Normal University

organism_name: Oryzobacter faecalis


asm_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

organism_name: Bacillus mobilis


asm_submitter: Thapar Institute of Engineering & Technology

organism_name: Priestia megaterium


organism_name: Nocardia sp. NPDC002869


organism_name: Streptomyces sp. NPDC000405


organism_name: Streptomyces seoulensis


excluded_from_refseq: contaminated; genome length too large

organism_name: Micrococcus luteus


asm_submitter: National Yang Ming Chiao Tung University

organism_name: Klebsiella pneumoniae


asm_submitter: wenzhou medical university

organism_name: Aeromonas caviae


asm_submitter: Jiangsu University

organism_name: Haloferax sp. YSSS75


asm_submitter: Hebei University of Technology

organism_name: Escherichia sp. F1


asm_submitter: Jinan University, Guangzhou 510632,China

organism_name: Pseudomonas sp. s4


organism_name: Haloferax sp. YSMS24


asm_submitter: University of the Witwatersrand

excluded_from_refseq: contaminated; annotation fails completeness check; many frameshifted proteins

organism_name: Escherichia coli


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins


asm_submitter: Ocean University of China

infraspecific_name: strain=HT-F

organism_name: Paracoccus homiensis


asm_submitter: Dezhou University

organism_name: Pseudomonas aeruginosa


asm_submitter: Zhejiang University

organism_name: Sulfitobacter faviae


asm_submitter: Capital Institute of Pediatrics


asm_submitter: Vilnius University

infraspecific_name: strain=VR4' HT30-3

organism_name: Pseudomonas mandelii


organism_name: Sphingobacterium sp. Lzh-3


asm_submitter: Institute of Gene Biology Russian Academy of Sciences

organism_name: Alkalibacillus sp. S2W


asm_submitter: First Medical Center of Chinese PLA General Hospital


asm_submitter: Universidad Autonoma del Estado de Mexico

organism_name: Micrococcus yunnanensis


asm_submitter: Federal University of Rio Grande

organism_name: Aphanothece stagnina RSMan2012


asm_submitter: LMU Munich

organism_name: Pseudomonas sp. Lb2C1-1


asm_submitter: HOSPITAL UNIVERSITARIO DONOSTIA

organism_name: Streptococcus pneumoniae


asm_submitter: Kunming University

infraspecific_name: strain=KC 131

organism_name: Nocardia arseniciresistens


asm_submitter: China West Normal University

organism_name: Nocardia sp. CWNU-33


asm_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi

infraspecific_name: strain=VTCC 70190

organism_name: Campylobacter parajejuni


asm_submitter: University Mohamed VI Polytechnic

infraspecific_name: strain=KFD

organism_name: Bacillus halotolerans


asm_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol

infraspecific_name: strain=NNEc 2960


infraspecific_name: strain=NNEc 2935


asm_submitter: Unversidad Michoacana de San Nicolas de Hidalgo

organism_name: Priestia aryabhattai


asm_submitter: University of Mosul

organism_name: Brachybacterium epidermidis


organism_name: Bacillus sp. AF56


organism_name: Bacillus amyloliquefaciens


organism_name: Bacillus sp. ICE1


organism_name: Bacillus sp. AF62


organism_name: Pseudomonas palleroniana


asm_submitter: Rochester Institute of Technology

organism_name: Lactococcus lactis


organism_name: Enterococcus faecium


asm_submitter: Odense University Hospital

organism_name: Staphylococcus aureus


organism_name: Lactococcus garvieae


organism_name: Serratia marcescens


organism_name: Enterococcus hirae


organism_name: Citrobacter braakii


asm_submitter: Kansas State University

organism_name: Acidobacteriota bacterium


organism_name: Candidatus Methylomirabilota bacterium


organism_name: bacterium


organism_name: Nitrospirota bacterium


organism_name: Pseudomonadota bacterium


organism_name: Actinomycetota bacterium


organism_name: Chloroflexota bacterium


asm_submitter: Chinese Academy of Sciences

organism_name: Shewanella mytili


asm_submitter: IBPM RAS

infraspecific_name: strain=Pure River

organism_name: Methylophilus sp. 'Pure River'


organism_name: Methylophilus sp. 3sh_L


asm_submitter: Central Marine Fisheries Research Institute

infraspecific_name: strain=MTCC 13043

organism_name: Bacillus subtilis


asm_submitter: Public Health England

excluded_from_refseq: from large multi-isolate project

organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


excluded_from_refseq: unverified source organism; from large multi-isolate project


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Pseudomonas aeruginosa


asm_submitter: USDA FSIS


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Chester


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Muenchen


asm_submitter: Ocean University of China

organism_name: Nitratireductor aquimarinus


asm_submitter: Zhejiang A&F University

organism_name: Burkholderia cepacia


asm_submitter: ocean university of China


asm_submitter: National Center for Biotechnology Information

organism_name: Streptococcus pneumoniae


asm_submitter: Institute of Microbiology

organism_name: Malacoplasma muris


organism_name: Metamycoplasma buccale


asm_submitter: Xi'an University of Technology

infraspecific_name: strain=WYT


asm_submitter: Korea Atomic Energy Research Institute

infraspecific_name: strain=KCTC 3955

organism_name: Deinococcus yunweiensis


asm_submitter: Chung-Ang university

organism_name: Agarivorans sp. DSG3-1


organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


infraspecific_name: strain=GPSC904; 9


infraspecific_name: strain=No GPSC


asm_submitter: Centers for Disease Control and Prevention


asm_submitter: CDC

organism_name: Salmonella enterica subsp. enterica serovar Kiambu


asm_submitter: Key Laboratory of Dairy Biotechnology and engineering

organism_name: Streptococcus intestinihominis


asm_submitter: Unversidad Michoacana de San Nicolas de Hidalgo

organism_name: Pseudomonas sp. UM16


organism_name: Pseudomonas palleroniana


organism_name: Bacillus sp. AF53


organism_name: Priestia megaterium


asm_submitter: Cornell University

organism_name: Dickeya dianthicola


asm_submitter: Idaho Bureau of Laboratories

organism_name: Streptococcus pyogenes


asm_submitter: Agriculture and Agri-Food Canada

organism_name: Enterococcus casseliflavus


asm_submitter: IBPM RAS

organism_name: Flavobacterium sp. C3NV


asm_submitter: National Research and Innovation Agency

organism_name: Bacillus pacificus


organism_name: Streptococcus pneumoniae


asm_submitter: Public Health England


asm_submitter: China Agricultural University

organism_name: Klebsiella pneumoniae


organism_name: Klebsiella variicola


asm_submitter: Northwest A&f University

organism_name: Streptomyces xanthophaeus


asm_submitter: China agriculture university

organism_name: Lactobacillus gasseri


asm_submitter: Zhejiang University

organism_name: Hoeflea sp. Naph1


organism_name: Tritonibacter mobilis


asm_submitter: Affiliated Hospital of Shaoxing University

organism_name: Salmonella enterica subsp. enterica serovar Goldcoast


asm_submitter: Capital Institute of Pediatrics


asm_submitter: National Center for Biotechnology Information


organism_name: Salmonella enterica


asm_submitter: Korea Food Research Institute

organism_name: Bacillus subtilis


asm_submitter: The Independent Schools Foundation Academy

organism_name: Rhizobium sp. SYY.PMSO


asm_submitter: The First Affiliated Hospital With Nanjing Medical University

organism_name: Pseudomonas aeruginosa


asm_submitter: Lanzhou University

organism_name: Pediococcus acidilactici


organism_name: Bartonella sp. DGB2


asm_submitter: Nanjing Agricultural University

organism_name: Lactiplantibacillus plantarum


asm_submitter: Huazhong Agricultural University

infraspecific_name: strain=ATCC 19115

organism_name: Listeria monocytogenes


asm_submitter: Vircell S.L.

infraspecific_name: strain=Nine Mile Q

organism_name: Coxiella burnetii


organism_name: Streptococcus pneumoniae


asm_submitter: National Institute for Interdisciplinary Science and Technology (CSIR)

organism_name: Pokkaliibacter plantistimulans


asm_submitter: Inha University

organism_name: Rubrivirga aquatilis


organism_name: Rubrivirga halophila


asm_submitter: Icahn School of Medicine

organism_name: Enterococcus faecalis


organism_name: Enterococcus faecium


asm_submitter: Newcastle University

organism_name: Arachnia propionica


excluded_from_refseq: genus undefined

organism_name: Candidatus Saccharibacteria bacterium oral taxon 488


asm_submitter: University of Turku

excluded_from_refseq: out of scope for the RefSeq project

infraspecific_name: strain=PCC 6803 substr. GT-T

organism_name: Synechocystis sp. PCC 6803 substr. GT-T


isolate: DELrpoZ


asm_submitter: Public Health England

organism_name: Campylobacter jejuni


annotation_name: Annotation submitted by INDICASAT AIP

annotation_provider: INDICASAT AIP

asm_name: JezBratislava

asm_submitter: INDICASAT AIP

infraspecific_name: strain=Jez Bratislava

organism_name: Leptospira interrogans


asm_name: VanTienen

infraspecific_name: strain=Van Tienen


asm_name: Djasiman

infraspecific_name: strain=Djasiman


organism_name: Campylobacter coli


asm_submitter: The Roslin Institute, University of Edinburgh

organism_name: Vibrio aestuarianus subsp. francensis


asm_submitter: King Abdullah University of Science and Technology (KAUST)

excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Fidelibacterota bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined


asm_submitter: Department of Infection Metagenomics, RIMD, Osaka University

organism_name: Phocaeicola vulgatus


asm_submitter: National Center for Biotechnology Information


organism_name: Candidatus Tectimicrobiota bacterium


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


organism_name: Streptococcus pneumoniae


organism_name: Enterobacter hormaechei


organism_name: Citrobacter freundii


organism_name: Campylobacter jejuni subsp. jejuni


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


isolate: P otherB 2


isolate: R 5B 8


isolate: R 5B 6


organism_name: Klebsiella pneumoniae


organism_name: Pseudomonas aeruginosa


asm_submitter: Centers for Disease Control and Prevention


isolate: R 5B 4


isolate: R 7B 8


asm_submitter: CDC

organism_name: Salmonella enterica


organism_name: Streptococcus pyogenes


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Salmonella enterica subsp. enterica serovar Senftenberg


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Liverpool


organism_name: Salmonella enterica subsp. enterica serovar Brandenburg


organism_name: Enterobacter asburiae


organism_name: Morganella morganii


organism_name: Serratia marcescens


organism_name: Enterobacter hormaechei


organism_name: Acinetobacter baumannii


organism_name: Streptococcus pneumoniae


organism_name: Klebsiella aerogenes


asm_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

organism_name: Alphaproteobacteria bacterium


organism_name: Opitutales bacterium


organism_name: Clostridia bacterium


asm_submitter: The University of the West Indies

infraspecific_name: strain=SMTT


asm_submitter: Washington University in Saint Louis

excluded_from_refseq: derived from metagenome

organism_name: Butyricicoccus pullicaecorum


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Streptococcus sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Thomasclavelia sp.


organism_name: Beduini sp.


organism_name: Clostridium sp.


organism_name: Bacteroides faecis


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Faecalimonas sp.


organism_name: Lachnospiraceae bacterium


organism_name: Coprococcus sp.


organism_name: Agathobacter sp.


organism_name: Thomasclavelia ramosa


organism_name: Anaerostipes caccae


organism_name: Streptococcus lutetiensis


organism_name: Blautia sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Streptococcus salivarius


organism_name: Veillonella parvula


organism_name: Agathobaculum sp.


organism_name: Acutalibacter sp.


organism_name: Collinsella sp.


organism_name: Longicatena caecimuris


organism_name: Akkermansia sp.


organism_name: Thomasclavelia spiroformis


organism_name: Oscillospiraceae bacterium


organism_name: Oliverpabstia sp.


organism_name: Enterococcus faecalis


organism_name: Veillonella rogosae


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Clostridium perfringens


organism_name: [Clostridium] innocuum


organism_name: Turicibacter sp.


organism_name: Coprococcus sp.


organism_name: Lawsonibacter sp.


organism_name: Romboutsia timonensis


organism_name: Coprobacillus cateniformis


organism_name: Haemophilus parainfluenzae


asm_submitter: Faculty of Medicine, Prince of Songkla University

organism_name: Cereibacter sphaeroides


asm_submitter: Sciensano

organism_name: Bacillus thuringiensis


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: Streptococcus sp.


asm_submitter: Shanghai Jiao Tong Uniersity

organism_name: Salmonella enterica


asm_submitter: Minhang Hospital, Fudan University

organism_name: Streptococcus pyogenes


asm_submitter: Izmir Institute of Technology

organism_name: Streptomyces sp. 35M1


asm_submitter: Faculty of Veterinary Sceince, Chulalongkorn University

infraspecific_name: strain=i 33.6/2

organism_name: Limosilactobacillus reuteri


infraspecific_name: strain=i 35.3/2


asm_submitter: Instituto Nacional de Salud

excluded_from_refseq: fragmented assembly

organism_name: Bordetella pertussis


asm_submitter: Institute of Microbiology

organism_name: Virgibacillus tibetensis


asm_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University

organism_name: Streptococcus pneumoniae


asm_submitter: Duisburg-Essen University

organism_name: Hydrosulfovibrio ferrireducens


excluded_from_refseq: unverified source organism; annotation fails completeness check


organism_name: Enterocloster aldenensis


organism_name: Bifidobacterium breve


organism_name: Enterococcus faecium


organism_name: Clostridia bacterium


organism_name: Mediterraneibacter gnavus


asm_submitter: National Center for Biotechnology Information

isolate: clinical isolate

organism_name: Acinetobacter baumannii


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Collinsella sp.


organism_name: Blautia wexlerae


organism_name: Clostridium sp.


organism_name: Streptococcus salivarius


organism_name: Blautia hansenii


organism_name: Clostridioides difficile


organism_name: Collinsella intestinalis


organism_name: Flavonifractor plautii


organism_name: Parabacteroides merdae


organism_name: Parabacteroides distasonis


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes finegoldii


organism_name: Odoribacter splanchnicus


organism_name: Subdoligranulum sp.


organism_name: Streptococcus pneumoniae


organism_name: Streptococcus pyogenes


organism_name: Acinetobacter baumannii


organism_name: Oscillibacter sp.


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


organism_name: Alistipes putredinis


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; many frameshifted proteins

organism_name: Eubacterium sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Faecalibacterium sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Alistipes shahii


organism_name: Lachnospira pectinoschiza


organism_name: Blautia sp.


organism_name: Bilophila wadsworthia


organism_name: Blautia faecis


organism_name: Ruthenibacterium lactatiformans


organism_name: Oscillospiraceae bacterium


organism_name: Lachnospiraceae bacterium


excluded_from_refseq: from large multi-isolate project

organism_name: Streptococcus pneumoniae


organism_name: Agathobacter rectalis


organism_name: Acutalibacteraceae bacterium


organism_name: [Ruminococcus] lactaris


organism_name: Christensenellales bacterium


organism_name: Clostridium sp.


organism_name: Akkermansia sp.


organism_name: Parasutterella sp.


organism_name: Candidatus Borkfalkia sp.


organism_name: Collinsella sp.


organism_name: [Eubacterium] siraeum


organism_name: Clostridia bacterium


organism_name: Barnesiella sp.


organism_name: Coprococcus sp.


organism_name: Clostridium fessum


organism_name: Christensenellaceae bacterium


organism_name: Dorea sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Bifidobacterium longum


organism_name: Lachnospira eligens


organism_name: Ruminococcus sp.


organism_name: Eubacterium sp.


organism_name: Turicibacter sanguinis


organism_name: Bacteroides sp.


organism_name: Enterococcus faecium


organism_name: Sellimonas intestinalis


organism_name: Eggerthella lenta


organism_name: Streptococcus salivarius


excluded_from_refseq: derived from metagenome; genome length too large

organism_name: Neglectibacter timonensis


organism_name: Clostridia bacterium


organism_name: Alistipes sp.


organism_name: [Clostridium] leptum


organism_name: Dialister invisus


organism_name: Anaerovoracaceae bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Merdimonas faecis


organism_name: Oscillospiraceae bacterium


organism_name: Faecalibacillus intestinalis


organism_name: Anaerobutyricum hallii


organism_name: Thomasclavelia ramosa


organism_name: Akkermansia sp.


organism_name: Evtepia sp.


organism_name: [Clostridium] scindens


organism_name: Ruminococcus sp.


organism_name: Gemmiger formicilis


organism_name: Ruthenibacterium sp.


organism_name: Dorea formicigenerans


organism_name: Hallella bergensis


organism_name: Clostridium sp.


organism_name: Streptococcus sp.


organism_name: Anaerostipes caccae


organism_name: Eisenbergiella sp.


organism_name: Waltera sp.


organism_name: Intestinibacter sp.


organism_name: Hungatella sp.


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Sutterella wadsworthensis


organism_name: Collinsella sp.


organism_name: Lawsonibacter sp.


organism_name: Thomasclavelia spiroformis


organism_name: Coprococcus sp.


organism_name: Megamonas funiformis


asm_submitter: University of Melbourne

organism_name: Staphylococcus aureus


organism_name: Corynebacterium aurimucosum


asm_submitter: Capital Institute of Pediatrics

organism_name: Klebsiella pneumoniae


asm_submitter: Academy of Military Medical Sciences

organism_name: Yersinia pestis


asm_submitter: Microbial Genomics Reference Laboratory, ICPMR

organism_name: Bordetella pertussis


asm_submitter: Centro de Investigacion Cientifica de Yucatan, A.C.

organism_name: Candidatus Phytoplasma palmae


organism_name: Pseudomonas aeruginosa


organism_name: Acinetobacter baumannii


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Streptococcus pneumoniae


organism_name: Enterobacter asburiae


asm_submitter: USDA FSIS

organism_name: Campylobacter coli


asm_submitter: Public Health England


organism_name: Salmonella enterica subsp. enterica serovar Bareilly


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Chester


organism_name: Campylobacter lari


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Streptococcus pneumoniae


organism_name: Salmonella enterica subsp. enterica serovar Newport


asm_submitter: University of KwaZulu-Natal

organism_name: Escherichia coli


asm_submitter: University of Galway


organism_name: Citrobacter freundii


organism_name: Enterobacter hormaechei


organism_name: Klebsiella pneumoniae


asm_submitter: Universidad de Concepcion

organism_name: Klebsiella michiganensis


asm_submitter: Veterinary Research Institute

organism_name: Limosilactobacillus reuteri subsp. suis


organism_name: Limosilactobacillus mucosae


organism_name: Ligilactobacillus salivarius


organism_name: Lactobacillus delbrueckii subsp. bulgaricus


organism_name: Bifidobacterium apri


organism_name: Lactobacillus porci


organism_name: Loigolactobacillus coryniformis subsp. coryniformis


organism_name: Lentilactobacillus parabuchneri


organism_name: Lacticaseibacillus paracasei subsp. paracasei


excluded_from_refseq: unverified source organism


organism_name: Pseudoscardovia radai


organism_name: Bifidobacterium boum


organism_name: Streptococcus pneumoniae


organism_name: Bifidobacterium porcinum


organism_name: Bifidobacterium pseudolongum subsp. globosum


organism_name: Lactobacillus equicursoris


organism_name: Bifidobacterium thermophilum


organism_name: Limosilactobacillus balticus


asm_submitter: NWAFU

organism_name: Clostridium perfringens


asm_submitter: Sanvira Biosciences Pvt Ltd

organism_name: Lactobacillus acidophilus


asm_submitter: University of California, Berkeley; School of Public Health

excluded_from_refseq: genus undefined


asm_submitter: University of the Philippines Visayas, Miagao, Iloilo

infraspecific_name: strain=calajunan

organism_name: Arthrobacter sp. 'calajunan'


asm_submitter: SIMBA

organism_name: Pantoea sp. SIMBA_079


excluded_from_refseq: genome length too small; genus undefined


asm_submitter: Washington University in Saint Louis

organism_name: Klebsiella michiganensis


organism_name: Faecalimonas umbilicata


organism_name: Enterococcus casseliflavus


organism_name: Dysgonomonas mossii


organism_name: Veillonella parvula


asm_submitter: National Center for Biotechnology Information


organism_name: Enterococcus sp.


organism_name: Escherichia coli


organism_name: Ruminococcus sp.


organism_name: Eggerthella lenta


organism_name: Enterocloster clostridioformis


organism_name: Mediterraneibacter gnavus


organism_name: Limosilactobacillus pontis


organism_name: Longicatena caecimuris


organism_name: Akkermansia sp.


organism_name: Hungatella sp.


organism_name: Zhenhengia sp.


organism_name: Blautia wexlerae


organism_name: Bifidobacterium dentium


organism_name: [Clostridium] innocuum


organism_name: Lactococcus lactis


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Oscillospiraceae bacterium


excluded_from_refseq: derived from metagenome

organism_name: Lacticaseibacillus rhamnosus


organism_name: Faecalibacterium sp.


organism_name: Streptococcus pneumoniae


organism_name: Alistipes finegoldii


organism_name: Dysosmobacter sp.


organism_name: Parabacteroides merdae


organism_name: Vescimonas sp.


organism_name: Christensenellales bacterium


organism_name: Suilimivivens sp.


organism_name: Lachnospiraceae bacterium


organism_name: Hominisplanchenecus sp.


organism_name: Coprococcus sp.


organism_name: Mediterraneibacter faecis


organism_name: [Eubacterium] siraeum


organism_name: Eubacterium sp.


organism_name: Alistipes communis


organism_name: Subdoligranulum sp.


organism_name: Roseburia sp.


organism_name: Anaerotignum faecicola


organism_name: Streptococcus pneumoniae


organism_name: Anaerostipes hadrus


organism_name: Neglectibacter timonensis


organism_name: Oscillibacter sp.


organism_name: Adlercreutzia sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Barnesiella sp.


organism_name: Akkermansia sp.


organism_name: Bacteroides intestinalis


organism_name: Oscillospiraceae bacterium


organism_name: Thomasclavelia sp.


organism_name: Pseudoruminococcus massiliensis


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small; many frameshifted proteins

organism_name: Bilophila wadsworthia


organism_name: Ruminococcus sp.


organism_name: Gallintestinimicrobium sp.


organism_name: Christensenellales bacterium


organism_name: Clostridia bacterium


organism_name: Streptococcus pneumoniae


organism_name: Monoglobus pectinilyticus


excluded_from_refseq: derived from metagenome; genome length too small; genus undefined

organism_name: [Clostridium] leptum


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Lachnospira eligens


organism_name: Faecalibacillus intestinalis


organism_name: Anaerobutyricum sp.


organism_name: Alistipes sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Eubacterium sp.


excluded_from_refseq: contaminated; derived from metagenome


organism_name: Dialister invisus


organism_name: Evtepia gabavorous


organism_name: Lachnospiraceae bacterium


organism_name: Butyricicoccaceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Anaerovoracaceae bacterium


organism_name: Bacteroides fragilis


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Bacteroides intestinalis


organism_name: Clostridium sp.


organism_name: Alistipes onderdonkii


organism_name: Bacteroides thetaiotaomicron


organism_name: Clostridia bacterium


organism_name: Dorea sp.


organism_name: Streptococcus pneumoniae


organism_name: Hominenteromicrobium sp.


organism_name: Ruminococcus callidus


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome

organism_name: Butyricicoccus sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Gemmiger formicilis


organism_name: Acutalibacteraceae bacterium


organism_name: Phocaeicola dorei


organism_name: Blautia massiliensis (ex Durand et al. 2017)


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: Frisingicoccus sp.


organism_name: Hominilimicola sp.


organism_name: Ruminococcus sp.


organism_name: Anaerobutyricum hallii


organism_name: Faecalibacillus intestinalis


organism_name: [Ruminococcus] lactaris


organism_name: Parabacteroides distasonis


organism_name: Faecalibacterium sp.


organism_name: Streptococcus pneumoniae


organism_name: Dorea sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Holdemania filiformis


organism_name: Allocoprococcus comes


organism_name: Bacteroides sp.


organism_name: Streptococcus salivarius


organism_name: Lachnospirales bacterium


organism_name: Agathobacter rectalis


organism_name: Acutalibacteraceae bacterium


organism_name: Roseburia intestinalis


organism_name: Clostridium fessum


organism_name: Clostridium sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Parasutterella sp.


organism_name: Roseburia inulinivorans


organism_name: [Clostridium] scindens


organism_name: Coprococcus sp.


organism_name: Streptococcus pneumoniae


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Enterococcus sp.


organism_name: Bifidobacterium catenulatum


organism_name: Enterococcus faecalis


organism_name: Faecalibacterium sp.


organism_name: Romboutsia timonensis


organism_name: Veillonella sp.


organism_name: Streptococcus salivarius


organism_name: Blautia wexlerae


organism_name: Christensenellaceae bacterium


organism_name: Mediterraneibacter gnavus


organism_name: Pilosibacter sp.


organism_name: Enterocloster sp.


organism_name: Bifidobacterium bifidum


organism_name: Bacteroides stercoris


organism_name: Flavonifractor plautii


organism_name: Intestinibacter bartlettii


organism_name: Bacteroides cellulosilyticus


asm_submitter: shandong university

organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


excluded_from_refseq: from large multi-isolate project

organism_name: Streptococcus pneumoniae


organism_name: Bifidobacterium dentium


organism_name: Hungatella sp.


organism_name: Clostridioides difficile


organism_name: Clostridium neonatale


organism_name: Enterococcus faecalis


organism_name: Megasphaera micronuciformis


organism_name: Beduini sp.


organism_name: Blautia wexlerae


organism_name: Actinomyces urogenitalis


organism_name: Lacticaseibacillus rhamnosus


organism_name: Dysosmobacter sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Veillonella parvula


organism_name: Allocoprococcus comes


organism_name: Lachnospiraceae bacterium


organism_name: Akkermansia sp.


organism_name: Agathobacter rectalis


organism_name: Streptococcus thermophilus


organism_name: Streptococcus pneumoniae


organism_name: Eubacterium sp.


organism_name: [Eubacterium] siraeum


organism_name: Oscillibacter sp.


organism_name: Phascolarctobacterium faecium


organism_name: Clostridium sp.


organism_name: Clostridia bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Opitutales bacterium


organism_name: Christensenellales bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Bacteroides uniformis


organism_name: Eubacterium ventriosum


organism_name: Monoglobus pectinilyticus


organism_name: [Ruminococcus] lactaris


organism_name: Agathobaculum sp.


organism_name: Bacteroides xylanisolvens


organism_name: Streptococcus pneumoniae


organism_name: Coprococcus sp.


organism_name: Ruminococcus sp.


organism_name: Blautia sp.


organism_name: Enterocloster bolteae


organism_name: Mediterraneibacter torques


organism_name: Bifidobacterium sp.


organism_name: Bifidobacterium catenulatum


organism_name: [Clostridium] innocuum


organism_name: Anaerococcus vaginalis


organism_name: [Clostridium] symbiosum


organism_name: Enterococcus avium


organism_name: Streptococcus thermophilus


organism_name: Alistipes putredinis


organism_name: Coprobacillus cateniformis


organism_name: Anaerotruncus colihominis


organism_name: Alistipes onderdonkii


organism_name: Streptococcus pneumoniae


organism_name: Akkermansia sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Bifidobacterium longum


organism_name: Anaerostipes caccae


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Blautia hansenii


organism_name: Sellimonas intestinalis


organism_name: Bacteroides uniformis


organism_name: Thomasclavelia ramosa


organism_name: Enterococcus faecium


organism_name: Streptococcus lutetiensis


organism_name: Bifidobacterium catenulatum


organism_name: Megasphaera micronuciformis


organism_name: Escherichia coli


organism_name: Mediterraneibacter faecis


organism_name: Eggerthella lenta


organism_name: Coprococcus phoceensis


organism_name: Streptococcus pneumoniae


organism_name: Bacteroides thetaiotaomicron


organism_name: Monoglobus pectinilyticus


organism_name: Alistipes communis


organism_name: Butyricicoccus sp.


organism_name: Adlercreutzia equolifaciens


organism_name: Bifidobacterium longum


organism_name: Dorea longicatena


organism_name: Oscillospiraceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Clostridium sp.


organism_name: Dialister invisus


organism_name: Eubacterium sp.


organism_name: Blautia sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Clostridia bacterium


organism_name: Bacilli bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Anaerobutyricum hallii


organism_name: Streptococcus pneumoniae


organism_name: Ruminococcus sp.


organism_name: Butyricimonas faecihominis


organism_name: Christensenellales bacterium


organism_name: Akkermansia sp.


organism_name: Alistipes sp.


organism_name: [Eubacterium] siraeum


organism_name: Barnesiella sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Clostridium sp.


organism_name: Alistipes ihumii


organism_name: Gemmiger formicilis


organism_name: Alistipes finegoldii


organism_name: Subdoligranulum sp.


organism_name: Parabacteroides merdae


organism_name: Evtepia gabavorous


organism_name: Coprococcus sp.


organism_name: Streptococcus pneumoniae


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Gallintestinimicrobium sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Parabacteroides distasonis


organism_name: Bacteroides fragilis


organism_name: Ezakiella massiliensis


organism_name: Peptostreptococcus anaerobius


organism_name: Clostridium perfringens


organism_name: Longicatena caecimuris


organism_name: [Clostridium] symbiosum


organism_name: Phocaeicola dorei


organism_name: Sellimonas intestinalis


organism_name: Coprobacillus cateniformis


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Anaerovoracaceae bacterium


organism_name: Blautia massiliensis (ex Durand et al. 2017)


excluded_from_refseq: derived from metagenome

organism_name: Eubacterium callanderi


organism_name: Hominenteromicrobium sp.


organism_name: Akkermansia sp.


organism_name: Streptococcus pneumoniae


organism_name: [Clostridium] scindens


organism_name: Adlercreutzia equolifaciens


organism_name: Anaerostipes hadrus


organism_name: Hydrogeniiclostridium mannosilyticum


organism_name: Christensenellaceae bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: [Eubacterium] siraeum


organism_name: Lentihominibacter sp.


organism_name: Bacteroides cellulosilyticus


organism_name: Alphaproteobacteria bacterium


organism_name: Eisenbergiella massiliensis


organism_name: Anaerotignum sp.


organism_name: Bacteroides xylanisolvens


organism_name: Akkermansia muciniphila


organism_name: Bacteroides uniformis


asm_submitter: Tel Aviv Sourasky Medical Center

organism_name: Acinetobacter baumannii


organism_name: Blautia wexlerae


organism_name: Streptococcus pneumoniae


organism_name: Faecalibacterium sp.


organism_name: Anaerotignum faecicola


organism_name: Subdoligranulum sp.


organism_name: Lacticaseibacillus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes shahii


organism_name: Waltera sp.


organism_name: Anaerobutyricum hallii


organism_name: Coprococcus sp.


organism_name: Christensenellales bacterium


organism_name: Evtepia gabavorous


organism_name: Clostridia bacterium


organism_name: Bilophila wadsworthia


organism_name: Coriobacteriales bacterium


organism_name: Eubacterium sp.


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Streptococcus pneumoniae


organism_name: Bacilli bacterium


organism_name: Akkermansia sp.


organism_name: Bacteroides xylanisolvens


organism_name: Agathobacter rectalis


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Faecalibacterium sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Ruminococcus sp.


organism_name: [Eubacterium] siraeum


organism_name: Lachnospiraceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Christensenellales bacterium


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Dysosmobacter welbionis


organism_name: Acutalibacteraceae bacterium


organism_name: Coprobacillus cateniformis


organism_name: Mediterraneibacter torques


organism_name: Streptococcus pneumoniae


organism_name: Odoribacter splanchnicus


organism_name: Anaerobutyricum soehngenii


organism_name: Gemmiger formicilis


organism_name: Sutterella wadsworthensis


organism_name: Thomasclavelia ramosa


organism_name: Phocaeicola dorei


organism_name: Megamonas funiformis


organism_name: Hominenteromicrobium sp.


organism_name: Alistipes finegoldii


organism_name: Alistipes sp.


organism_name: Eubacterium sp.


organism_name: Fusobacterium sp.


organism_name: Bifidobacterium catenulatum


organism_name: Faecalibacterium sp.


organism_name: Akkermansia sp.


organism_name: Blautia caecimuris


organism_name: Coprococcus phoceensis


organism_name: Streptococcus pneumoniae


organism_name: Streptococcus salivarius


organism_name: Pseudoruminococcus massiliensis


organism_name: Acutalibacteraceae bacterium


organism_name: Parasutterella excrementihominis


organism_name: Anaerovoracaceae bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Faecalibacillus intestinalis


organism_name: Clostridia bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Gallintestinimicrobium sp.


organism_name: Akkermansia muciniphila


organism_name: Lachnospira eligens


organism_name: Faecalibacterium sp.


organism_name: Longicatena caecimuris


organism_name: Clostridium sp.


organism_name: Emergencia timonensis


organism_name: [Clostridium] symbiosum


organism_name: Streptococcus pneumoniae


organism_name: [Clostridium] hylemonae


organism_name: Massiliimicrobium timonense


organism_name: Blautia sp.


organism_name: Eubacterium callanderi


organism_name: Collinsella sp.


organism_name: Butyricicoccus sp.


organism_name: Parabacteroides distasonis


organism_name: Alistipes sp.


organism_name: Roseburia sp.


organism_name: Clostridia bacterium


organism_name: Ruminococcus callidus


organism_name: Eubacterium sp.


organism_name: Oscillospiraceae bacterium


organism_name: Phocaeicola massiliensis


organism_name: Sellimonas intestinalis


excluded_from_refseq: derived from metagenome; genome length too large

organism_name: Faecalispora jeddahensis


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Thomasclavelia spiroformis


organism_name: Streptococcus pneumoniae


organism_name: Clostridium sp.


organism_name: Eisenbergiella massiliensis


organism_name: Waltera sp.


organism_name: Barnesiella sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Ruminococcus sp.


organism_name: Ruthenibacterium sp.


organism_name: Pygmaiobacter massiliensis


organism_name: Anaerostipes sp.


organism_name: Terrisporobacter sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Anaerostipes hadrus


organism_name: Blautia hansenii


organism_name: Frisingicoccus sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Christensenellaceae bacterium


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Faecalibacterium prausnitzii


organism_name: [Clostridium] scindens


organism_name: Streptococcus pneumoniae


organism_name: Acutalibacteraceae bacterium


organism_name: Indolivaga capnocytophagoides


organism_name: Roseburia faecis


organism_name: [Clostridium] innocuum


organism_name: Lachnospira sp.


organism_name: Dialister invisus


organism_name: Lawsonibacter sp.


organism_name: Hominilimicola sp.


organism_name: Clostridium saudiense


organism_name: Sarcina ventriculi


organism_name: Lachnospiraceae bacterium


organism_name: Clostridium sp.


organism_name: Blautia sp.


organism_name: Megasphaera micronuciformis


organism_name: Beduini sp.


organism_name: Flavonifractor plautii


organism_name: Turicibacter sanguinis


organism_name: Streptococcus pneumoniae


organism_name: Clostridium butyricum


organism_name: Hungatella sp.


organism_name: Veillonella parvula


organism_name: Lactococcus petauri


organism_name: Enterococcus casseliflavus


organism_name: Coprococcus sp.


organism_name: Mediterraneibacter faecis


organism_name: Blautia wexlerae


organism_name: Veillonella atypica


organism_name: Anaerostipes caccae


organism_name: Mediterraneibacter gnavus


organism_name: Lacticaseibacillus rhamnosus


organism_name: Lachnospira pectinoschiza


organism_name: Bacteroides faecis


organism_name: Lactobacillus acidophilus


organism_name: Faecalimonas umbilicata


organism_name: Clostridium neonatale


organism_name: Bifidobacterium longum


organism_name: Streptococcus pneumoniae


organism_name: Faecalibacterium sp.


organism_name: Veillonella sp.


organism_name: Enterococcus faecalis


organism_name: Clostridioides difficile


organism_name: Clostridium paraputrificum


organism_name: Acinetobacter baumannii


organism_name: Intestinibacter bartlettii


organism_name: Enterococcus durans


organism_name: Eggerthella lenta


organism_name: Bifidobacterium bifidum


organism_name: Enterobacter hormaechei


organism_name: Actinomyces urogenitalis


organism_name: Escherichia coli


organism_name: Veillonella parvula


organism_name: Oscillospiraceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; many frameshifted proteins

organism_name: Roseburia hominis


organism_name: Streptococcus pneumoniae


organism_name: Clostridia bacterium


organism_name: Christensenellaceae bacterium


organism_name: Segatella copri


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Coprococcus sp.


organism_name: Streptococcus salivarius


organism_name: Methanobrevibacter smithii


organism_name: Phocaeicola coprophilus


organism_name: Lachnospiraceae bacterium


organism_name: Prevotellamassilia sp.


organism_name: Hominisplanchenecus sp.


organism_name: Eubacterium sp.


organism_name: Christensenellales bacterium


organism_name: Faecalibacterium sp.


organism_name: Dialister invisus


organism_name: Acutalibacteraceae bacterium


organism_name: Alistipes putredinis


organism_name: Anaerobutyricum sp.


organism_name: Streptococcus pneumoniae


organism_name: Ruminococcus sp.


organism_name: Clostridium sp.


organism_name: Agathobacter sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: Bacteroides nordii


organism_name: Odoribacter splanchnicus


organism_name: Parabacteroides merdae


organism_name: Escherichia coli


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Collinsella sp.


organism_name: Streptococcus salivarius


organism_name: Lacticaseibacillus rhamnosus


organism_name: Dorea longicatena


organism_name: Lachnospira pectinoschiza


organism_name: Roseburia faecis


organism_name: Lachnospira sp.


organism_name: Lachnospiraceae bacterium


organism_name: Hominenteromicrobium sp.


excluded_from_refseq: from large multi-isolate project

organism_name: Streptococcus pneumoniae


organism_name: Eubacterium sp.


organism_name: Oscillospiraceae bacterium


organism_name: Streptococcus sp.


organism_name: Coprococcus sp.


organism_name: Christensenellales bacterium


organism_name: Alistipes sp.


organism_name: Bifidobacterium adolescentis


organism_name: Enterococcus lactis


organism_name: Dorea sp.


organism_name: Ruminococcus sp.


organism_name: Bifidobacterium catenulatum


organism_name: [Eubacterium] siraeum


organism_name: Faecalibacterium sp.


organism_name: Roseburia inulinivorans


excluded_from_refseq: derived from metagenome; many frameshifted proteins

organism_name: [Ruminococcus] lactaris


organism_name: Subdoligranulum sp.


organism_name: Bacteroides fragilis


organism_name: Eubacterium ventriosum


organism_name: Streptococcus thermophilus


organism_name: Oscillospiraceae bacterium


organism_name: Ruminococcus callidus


organism_name: Eubacterium sp.


organism_name: Bifidobacterium bifidum


organism_name: Gallintestinimicrobium sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Faecalimonas sp.


organism_name: Clostridium sp.


organism_name: Evtepia gabavorous


organism_name: Lachnospiraceae bacterium


organism_name: Christensenellales bacterium


organism_name: Christensenellaceae bacterium


excluded_from_refseq: derived from metagenome; genome length too small; genus undefined

organism_name: [Eubacterium] siraeum


organism_name: Waltera sp.


organism_name: Clostridia bacterium


organism_name: Ruminococcus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Pseudoruminococcus massiliensis


organism_name: Blautia sp.


organism_name: Enterococcus faecium


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Streptococcus salivarius


organism_name: Streptococcus sp.


organism_name: [Clostridium] leptum


organism_name: Coprococcus sp.


organism_name: Sutterella wadsworthensis


organism_name: Bacteroides uniformis


organism_name: Hominilimicola sp.


organism_name: Eubacterium sp.


organism_name: Faecalibacterium sp.


organism_name: Lachnospiraceae bacterium


organism_name: Bacteroides xylanisolvens


organism_name: Alistipes finegoldii


organism_name: Faecalibacterium prausnitzii


organism_name: Bifidobacterium bifidum


organism_name: Blautia obeum


organism_name: Clostridium fessum


organism_name: Lactococcus lactis


organism_name: Acutalibacteraceae bacterium


organism_name: Anaerostipes hadrus


organism_name: Alistipes sp.


organism_name: Clostridium sp.


organism_name: Gemmiger formicilis


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome

organism_name: Ruminococcus sp.


organism_name: Longicatena caecimuris


organism_name: Roseburia intestinalis


organism_name: Agathobacter rectalis


organism_name: Faecalibacillus intestinalis


organism_name: Eggerthella lenta


organism_name: Streptococcus salivarius


excluded_from_refseq: contaminated; derived from metagenome; genome length too large

organism_name: Anaerobutyricum soehngenii


excluded_from_refseq: derived from metagenome

organism_name: Thomasclavelia ramosa


organism_name: Collinsella sp.


organism_name: Bacteroides ovatus


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Coprococcus phoceensis


organism_name: Roseburia inulinivorans


organism_name: Bifidobacterium sp.


organism_name: Bifidobacterium breve


organism_name: Waltera sp.


organism_name: Clostridium paraputrificum


organism_name: Mediterraneibacter faecis


organism_name: Mediterraneibacter gnavus


organism_name: Blautia wexlerae


organism_name: Roseburia sp.


organism_name: Ruminococcus sp.


organism_name: Lachnospira eligens


organism_name: Phocaeicola vulgatus


organism_name: Streptococcus salivarius


organism_name: Terrisporobacter sp.


organism_name: Flavonifractor plautii


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome; fragmented assembly

organism_name: Butyricicoccus sp.


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Akkermansia sp.


organism_name: Parabacteroides distasonis


organism_name: Enterocloster sp.


organism_name: Collinsella aerofaciens


organism_name: Weissella confusa


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Acutalibacteraceae bacterium


organism_name: Eubacterium sp.


organism_name: Clostridium sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Blautia sp.


organism_name: Thomasclavelia spiroformis


organism_name: [Clostridium] symbiosum


organism_name: Anaerobutyricum sp.


organism_name: Veillonella nakazawae


organism_name: Mediterraneibacter torques


organism_name: Haemophilus parainfluenzae


organism_name: Parasutterella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Intestinibacter bartlettii


organism_name: Enterococcus durans


organism_name: Bacteroides thetaiotaomicron


organism_name: Veillonella parvula


organism_name: Enterococcus avium


organism_name: Eisenbergiella sp.


organism_name: Eubacterium callanderi


organism_name: Bilophila wadsworthia


organism_name: Dysgonomonas mossii


organism_name: Hungatella sp.


organism_name: Escherichia coli


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Varibaculum cambriense


organism_name: Enterococcus gallinarum


organism_name: [Clostridium] innocuum


organism_name: Lacticaseibacillus rhamnosus


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Bifidobacterium longum


organism_name: Sellimonas intestinalis


organism_name: Enterococcus faecalis


organism_name: Clostridioides difficile


organism_name: Cutibacterium avidum


organism_name: Oscillibacter sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Ruminococcus sp.


organism_name: Faecalibacillus intestinalis


organism_name: Thomasclavelia spiroformis


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Clostridia bacterium


organism_name: Christensenellales bacterium


organism_name: Lachnospira sp.


organism_name: Mediterraneibacter torques


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Christensenellaceae bacterium


organism_name: Allocoprococcus comes


organism_name: Clostridium paraputrificum


organism_name: Streptococcus salivarius


organism_name: Coprococcus phoceensis


organism_name: Faecalibacterium prausnitzii


organism_name: Odoribacter laneus


organism_name: Alistipes onderdonkii


organism_name: [Eubacterium] siraeum


organism_name: Alphaproteobacteria bacterium


organism_name: Alistipes sp.


organism_name: Anaerovoracaceae bacterium


organism_name: Coprobacillus cateniformis


organism_name: Bacteroides fragilis


organism_name: Peptostreptococcus stomatis


organism_name: Oscillospiraceae bacterium


organism_name: Anaeromassilibacillus sp.


organism_name: Clostridium sp.


organism_name: Evtepia gabavorous


organism_name: Clostridia bacterium


organism_name: Ruminococcus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Lachnospira eligens


organism_name: Gemmiger formicilis


organism_name: Faecalibacterium sp.


organism_name: Eubacterium sp.


organism_name: [Clostridium] leptum


organism_name: Blautia producta


organism_name: Anaerobutyricum hallii


organism_name: Collinsella sp.


organism_name: [Clostridium] scindens


organism_name: [Eubacterium] siraeum


organism_name: Ruthenibacterium lactatiformans


organism_name: Adlercreutzia equolifaciens


organism_name: Alistipes onderdonkii


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Dialister sp.


organism_name: Streptococcus salivarius


organism_name: Neglectibacter timonensis


organism_name: Bacilli bacterium


organism_name: Enterococcus faecalis


organism_name: Blautia wexlerae


organism_name: Agathobacter rectalis


organism_name: Mediterraneibacter gnavus


organism_name: Anaerobutyricum soehngenii


organism_name: Anaerostipes hadrus


organism_name: Coprococcus phoceensis


organism_name: Faecalibacterium prausnitzii


organism_name: Enterococcus faecium


organism_name: Faecalibacterium sp.


organism_name: Clostridia bacterium


organism_name: [Ruminococcus] lactaris


organism_name: Subdoligranulum sp.


organism_name: Lachnospira pectinoschiza


organism_name: Gemmiger sp.


organism_name: Haemophilus parainfluenzae


organism_name: Bacteroides thetaiotaomicron


organism_name: Parabacteroides goldsteinii


organism_name: Waltera sp.


organism_name: Collinsella sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: Enterocloster bolteae


organism_name: Roseburia inulinivorans


organism_name: Anaerococcus obesiensis


organism_name: Clostridium sp.


organism_name: Proteus mirabilis


organism_name: Butyribacter sp.


organism_name: Roseburia intestinalis


organism_name: [Clostridium] innocuum


organism_name: Dysosmobacter welbionis


organism_name: Pilosibacter sp.


organism_name: Thomasclavelia sp.


organism_name: Lachnospira eligens


organism_name: Klebsiella pneumoniae


organism_name: Thomasclavelia ramosa


organism_name: Longicatena caecimuris


organism_name: Eubacterium ramulus


organism_name: Clostridium saudiense


organism_name: Eisenbergiella massiliensis


organism_name: Sellimonas intestinalis


organism_name: Akkermansia sp.


organism_name: Frisingicoccus sp.


excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small

organism_name: Blautia producta


organism_name: Ruminococcus sp.


organism_name: Anaerococcus obesiensis


organism_name: Streptococcus agalactiae


organism_name: Hoylesella buccalis


organism_name: Enterococcus avium


organism_name: Finegoldia magna


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Roseburia hominis


organism_name: Intestinibacter bartlettii


organism_name: Escherichia coli