organism_name: Clostridium sp.


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: Washington University in Saint Louis

assembly_level: Contig

assembly_type: haploid

excluded_from_refseq: derived from metagenome

genome_rep: Full

group: bacteria

organism_name: Blautia wexlerae

release_type: Major

version_status: latest


assembly_level: Scaffold

paired_asm_comp: identical


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Clostridia bacterium


organism_name: Romboutsia timonensis


organism_name: Enterococcus sp.


organism_name: Veillonella parvula


organism_name: Akkermansia muciniphila


organism_name: Bifidobacterium breve


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: Enterocloster bolteae


organism_name: Faecalibacterium sp.


organism_name: Flavonifractor plautii


organism_name: Eisenbergiella sp.


organism_name: Anaerostipes sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Blautia caecimuris


organism_name: Segatella copri


organism_name: Thomasclavelia sp.


organism_name: Faecalispora jeddahensis


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Faecalimonas nexilis


organism_name: Streptococcus thermophilus


organism_name: Zhenhengia sp.


organism_name: Eggerthella lenta


organism_name: Anaerostipes caccae


organism_name: Acutalibacteraceae bacterium


organism_name: Bifidobacterium scardovii


organism_name: Hungatella sp.


organism_name: Veillonella atypica


organism_name: Mediterraneibacter gnavus


organism_name: Clostridium butyricum


organism_name: Staphylococcus hominis


organism_name: Peptoniphilus grossensis


organism_name: Streptococcus salivarius


organism_name: Veillonella nakazawae


organism_name: Finegoldia magna


organism_name: Escherichia coli


organism_name: Alistipes ihumii


organism_name: Staphylococcus epidermidis


organism_name: Clostridia bacterium


organism_name: Mediterraneibacter faecis


organism_name: Hungatella hathewayi


organism_name: Dorea longicatena


organism_name: Merdibacter sp.


organism_name: Anaerovoracaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Gemmiger formicilis


organism_name: Oscillospiraceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Eggerthellaceae bacterium


organism_name: Bifidobacterium longum


organism_name: Alistipes putredinis


organism_name: Proteus mirabilis


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Christensenellaceae bacterium


organism_name: Subdoligranulum sp.


organism_name: Clostridium sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Streptococcus salivarius


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Eubacterium sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Acutalibacteraceae bacterium


organism_name: Collinsella intestinalis


organism_name: Coprococcus sp.


organism_name: Lachnospiraceae bacterium


organism_name: Faecalibacillus intestinalis


organism_name: Akkermansia muciniphila


organism_name: Ruminococcus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Clostridia bacterium


organism_name: Anaerovoracaceae bacterium


organism_name: Alistipes onderdonkii


organism_name: Christensenellales bacterium


organism_name: Dialister invisus


organism_name: Sutterella wadsworthensis


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Phocaeicola vulgatus


organism_name: Hominisplanchenecus sp.


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Pseudoruminococcus massiliensis


organism_name: Bifidobacterium longum


organism_name: Paeniclostridium sp.


excluded_from_refseq: derived from metagenome; genome length too large

organism_name: Holdemanella porci


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Bacteroides thetaiotaomicron


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Blautia faecis


organism_name: Agathobacter rectalis


organism_name: Sellimonas intestinalis


organism_name: Alistipes putredinis


organism_name: Gemmiger formicilis


organism_name: Eggerthella lenta


organism_name: Segatella copri


organism_name: Clostridium sp.


organism_name: Ruminococcus callidus


organism_name: Escherichia coli


organism_name: Faecalibacterium prausnitzii


organism_name: Collinsella sp.


organism_name: Lachnospiraceae bacterium


organism_name: Evtepia gabavorous


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Faecalibacillus sp.


organism_name: Blautia hydrogenotrophica


organism_name: Acutalibacteraceae bacterium


organism_name: Parabacteroides distasonis


organism_name: Roseburia faecis


organism_name: Bacteroides uniformis


organism_name: Enterococcus faecium


organism_name: Intestinimonas butyriciproducens


organism_name: Blautia sp.


organism_name: Mediterraneibacter torques


organism_name: Peptoniphilus sp.


organism_name: Thomasclavelia spiroformis


organism_name: Coprobacillus cateniformis


organism_name: Enterocloster sp.


organism_name: Anaerostipes hadrus


organism_name: Eggerthella lenta


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Mediterraneibacter gnavus


organism_name: Phocaeicola coprophilus


organism_name: Veillonella parvula


organism_name: Hungatella sp.


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Coprococcus phoceensis


organism_name: Intestinibacter bartlettii


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Lacrimispora saccharolytica


organism_name: Acutalibacteraceae bacterium


organism_name: Streptococcus thermophilus


organism_name: Blautia sp.


organism_name: Dialister sp.


organism_name: [Clostridium] symbiosum


organism_name: Blautia hansenii


organism_name: Escherichia coli


organism_name: Proteus mirabilis


organism_name: Enterococcus faecium


organism_name: Streptococcus sp.


organism_name: Eubacterium callanderi


organism_name: Gallintestinimicrobium sp.


organism_name: Anaerobutyricum soehngenii


organism_name: Mediterraneibacter faecis


organism_name: Lachnospiraceae bacterium


organism_name: Coprococcus sp.


organism_name: Clostridium sp.


organism_name: Roseburia intestinalis


organism_name: Acutalibacteraceae bacterium


organism_name: Waltera sp.


organism_name: Lachnospira pectinoschiza


organism_name: Oscillospiraceae bacterium


organism_name: Christensenellales bacterium


organism_name: Bifidobacterium breve


organism_name: Blautia wexlerae


organism_name: Roseburia sp.


organism_name: Phocaeicola sp.


organism_name: Faecalibacterium sp.


organism_name: Bifidobacterium animalis


organism_name: Streptococcus salivarius


organism_name: Dysgonomonas mossii


organism_name: Mediterraneibacter gnavus


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Blautia producta


organism_name: Anaerotignum sp.


organism_name: Bifidobacterium bifidum


organism_name: Thomasclavelia ramosa


organism_name: Ruminococcus sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Anaerostipes caccae


organism_name: Lachnospira sp.


organism_name: [Clostridium] leptum


organism_name: Clostridia bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Blautia caecimuris


organism_name: Dysosmobacter welbionis


organism_name: Acutalibacter sp.


organism_name: Megamonas funiformis


organism_name: Collinsella phocaeensis


organism_name: Bifidobacterium longum


organism_name: [Clostridium] innocuum


organism_name: Streptococcus thermophilus


organism_name: Phocaeicola plebeius


organism_name: Flavonifractor plautii


organism_name: Enterococcus canintestini


organism_name: Enterococcus faecalis


organism_name: Bifidobacterium pullorum


organism_name: Faecalimonas sp.


organism_name: Lactobacillus paragasseri


organism_name: Eisenbergiella sp.


organism_name: Clostridioides difficile


organism_name: Enterobacter hormaechei


organism_name: Collinsella stercoris


organism_name: Veillonella parvula


organism_name: Enterococcus casseliflavus


organism_name: Waltera sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; many frameshifted proteins

organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Oscillospiraceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Slackia sp.


organism_name: Faecalibacillus intestinalis


group: archaea

organism_name: Methanobrevibacter smithii


organism_name: Fusobacterium sp.


organism_name: Clostridium fessum


organism_name: Christensenellales bacterium


organism_name: Odoribacter splanchnicus


organism_name: Gallintestinimicrobium sp.


organism_name: Lachnospira pectinoschiza


organism_name: Eubacterium sp.


organism_name: Pseudoruminococcus massiliensis


organism_name: Faecalibacterium sp.


organism_name: Anaerobutyricum sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Bifidobacterium bifidum


organism_name: Alphaproteobacteria bacterium


organism_name: Mediterraneibacter faecis


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Alistipes communis


organism_name: Clostridia bacterium


excluded_from_refseq: derived from metagenome

organism_name: Ruminococcus sp.


organism_name: Sutterella wadsworthensis


organism_name: Alistipes putredinis


organism_name: Subdoligranulum sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Christensenellales bacterium


organism_name: Mediterraneibacter torques


organism_name: Coprococcus sp.


organism_name: Clostridium sp.


organism_name: Eubacterium sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small; many frameshifted proteins

organism_name: Phocaeicola coprocola


organism_name: Lachnospiraceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: [Clostridium] scindens


organism_name: Blautia sp.


organism_name: Holdemanella porci


organism_name: Blautia faecis


organism_name: Gemmiger formicilis


organism_name: Acutalibacteraceae bacterium


organism_name: Phocaeicola vulgatus


organism_name: Collinsella sp.


organism_name: Enterococcus faecium


organism_name: Eggerthella lenta


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Paraclostridium bifermentans


organism_name: Segatella copri


organism_name: Clostridia bacterium


organism_name: Streptococcus thermophilus


organism_name: Alistipes onderdonkii


organism_name: Oscillospiraceae bacterium


organism_name: Ruminococcus sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Coprococcus eutactus


excluded_from_refseq: contaminated; derived from metagenome; genome length too large

organism_name: Anaerobutyricum soehngenii


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes ihumii


organism_name: Bilophila wadsworthia


organism_name: Agathobacter rectalis


organism_name: Waltera sp.


organism_name: Roseburia faecis


organism_name: Coprobacter sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Coprobacillus cateniformis


organism_name: Negativibacillus sp.


organism_name: Parabacteroides distasonis


organism_name: Christensenellaceae bacterium


organism_name: Escherichia coli


organism_name: [Eubacterium] siraeum


organism_name: Dialister invisus


organism_name: Evtepia gabavorous


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Clostridia bacterium


organism_name: Bacteroides thetaiotaomicron


organism_name: Paraclostridium sordellii


organism_name: Bacteroides uniformis


organism_name: Bifidobacterium longum


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Peptoniphilus sp.


organism_name: Blautia sp.


organism_name: Veillonella parvula


organism_name: Bifidobacterium catenulatum


organism_name: Mediterraneibacter gnavus


organism_name: Eisenbergiella massiliensis


organism_name: Blautia wexlerae


organism_name: Sellimonas intestinalis


organism_name: Escherichia coli


organism_name: Lachnospira eligens


organism_name: Acutalibacteraceae bacterium


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Coprococcus sp.


organism_name: Lachnospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Anaerotignum sp.


organism_name: Enterococcus faecium


organism_name: Anaerostipes hadrus


organism_name: Roseburia sp.


organism_name: Paraclostridium sordellii


organism_name: Streptococcus salivarius


organism_name: Faecalibacterium sp.


organism_name: Bifidobacterium sp.


organism_name: Ruminococcus sp.


organism_name: Enterocloster sp.


organism_name: Hominilimicola sp.


organism_name: Veillonella nakazawae


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Sutterella sp.


organism_name: [Ruminococcus] lactaris


organism_name: Dysosmobacter welbionis


organism_name: Dysgonomonas mossii


organism_name: Phocaeicola plebeius


organism_name: Phocaeicola coprophilus


organism_name: Hungatella sp.


organism_name: Anaerostipes caccae


organism_name: Blautia hansenii


organism_name: Collinsella stercoris


organism_name: Lacrimispora sp.


organism_name: [Clostridium] leptum


organism_name: Thomasclavelia ramosa


organism_name: Enterocloster aldenensis


organism_name: Blautia sp.


organism_name: Acutalibacter sp.


organism_name: Eubacterium callanderi


organism_name: Eisenbergiella sp.


organism_name: Collinsella phocaeensis


organism_name: Ruthenibacterium lactatiformans


organism_name: Faecalimonas sp.


organism_name: Flavonifractor plautii


organism_name: Bifidobacterium longum


organism_name: Veillonella parvula


organism_name: Megamonas funiformis


organism_name: Bifidobacterium breve


organism_name: Flintibacter sp.


organism_name: Bifidobacterium pullorum


organism_name: Blautia producta


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Acutalibacteraceae bacterium


organism_name: Anaerococcus obesiensis


organism_name: Enterococcus canintestini


organism_name: Enterobacter hormaechei


organism_name: Enterococcus sp.


organism_name: [Clostridium] innocuum


organism_name: Enterobacter sp.


organism_name: Enterococcus faecalis


organism_name: Streptococcus sp.


organism_name: Mediterraneibacter gnavus


organism_name: Lactobacillus paragasseri


organism_name: Escherichia sp.


organism_name: [Clostridium] symbiosum


organism_name: Intestinibacter bartlettii


organism_name: Enterocloster bolteae


organism_name: Agathobaculum desmolans


organism_name: Clostridioides difficile


organism_name: Coprococcus sp.


organism_name: Alistipes ihumii


organism_name: Clostridia bacterium


organism_name: Alistipes finegoldii


organism_name: Barnesiella sp.


organism_name: Christensenellales bacterium


organism_name: Akkermansia sp.


organism_name: Collinsella bouchesdurhonensis


organism_name: Methanobrevibacter smithii


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Turicibacter sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Dialister invisus


organism_name: Odoribacter splanchnicus


organism_name: Eggerthellaceae bacterium


organism_name: Ruminococcus sp.


organism_name: Bacteroides thetaiotaomicron


organism_name: Hungatella hathewayi


organism_name: Collinsella sp.


organism_name: Bifidobacterium adolescentis


organism_name: Clostridium paraputrificum


organism_name: Clostridia bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Bifidobacterium bifidum


organism_name: Coprococcus sp.


organism_name: Eubacterium sp.


organism_name: Oscillospiraceae bacterium


organism_name: Ruminococcus callidus


organism_name: Fusobacterium varium


organism_name: Streptococcus salivarius


organism_name: Bacteroides sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Hominenteromicrobium sp.


organism_name: Merdibacter sp.


organism_name: Blautia obeum


organism_name: Faecalibacillus intestinalis


organism_name: Mediterraneibacter faecis


organism_name: Faecalibacterium sp.


organism_name: Dorea longicatena


excluded_from_refseq: abnormal gene to sequence ratio; annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: Collinsella sp.


organism_name: Phocaeicola vulgatus


organism_name: Hominisplanchenecus sp.


organism_name: Lachnospiraceae bacterium


excluded_from_refseq: abnormal gene to sequence ratio; annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small; many frameshifted proteins

organism_name: Dysosmobacter welbionis


organism_name: Bacteroides ovatus


organism_name: Oscillospiraceae bacterium


organism_name: Eubacterium ventriosum


organism_name: Ruminococcus sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Clostridium perfringens


organism_name: Alistipes putredinis


organism_name: Blautia sp.


organism_name: Parabacteroides merdae


organism_name: Coprococcus eutactus


organism_name: Eubacterium sp.


organism_name: Roseburia faecis


organism_name: Bifidobacterium longum


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Faecalibacterium prausnitzii


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Streptococcus salivarius


organism_name: Clostridium fessum


organism_name: Anaerostipes sp.


organism_name: Subdoligranulum sp.


organism_name: Alistipes indistinctus


organism_name: Angelakisella sp.


organism_name: Evtepia sp.


organism_name: Oscillospiraceae bacterium


organism_name: [Eubacterium] siraeum


organism_name: Bacteroides uniformis


organism_name: Butyricimonas faecalis


organism_name: Clostridia bacterium


organism_name: Ruminococcus sp.


organism_name: Odoribacter splanchnicus


organism_name: Hominilimicola sp.


organism_name: Turicibacter sp.


organism_name: Desulfovibrio sp.


organism_name: Christensenellales bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Romboutsia timonensis


organism_name: Streptococcus sp.


organism_name: Paratractidigestivibacter faecalis


organism_name: Escherichia coli


organism_name: Coprococcus sp.


organism_name: Segatella copri


organism_name: [Clostridium] symbiosum


organism_name: Holdemanella porci


organism_name: Blautia sp.


organism_name: Dorea formicigenerans


organism_name: Dorea sp.


organism_name: Clostridium perfringens


organism_name: Ruminococcus sp.


organism_name: Agathobacter rectalis


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Lachnospiraceae bacterium


organism_name: Anaerovoracaceae bacterium


organism_name: Mediterraneibacter faecis


organism_name: Blautia wexlerae


organism_name: Oscillospiraceae bacterium


organism_name: Sutterella wadsworthensis


organism_name: Gemmiger sp.


excluded_from_refseq: derived from metagenome; genome length too large

organism_name: Anaerobutyricum hallii


organism_name: Eubacterium sp.


organism_name: Barnesiella intestinihominis


organism_name: Clostridium sp.


organism_name: Faecalibacillus intestinalis


organism_name: Bacilli bacterium


organism_name: Mediterraneibacter torques


organism_name: Acutalibacteraceae bacterium


organism_name: Bifidobacterium bifidum


organism_name: Christensenellales bacterium


organism_name: Parabacteroides distasonis


organism_name: Escherichia coli


organism_name: Collinsella sp.


organism_name: Phocaeicola vulgatus


organism_name: Paraclostridium sordellii


organism_name: Streptococcus sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Prevotella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Roseburia inulinivorans


organism_name: Mediterraneibacter faecis


organism_name: Faecalibacterium sp.


organism_name: Flavonifractor plautii


organism_name: Dysosmobacter sp.


organism_name: Akkermansia muciniphila


organism_name: [Clostridium] leptum


organism_name: Mediterraneibacter gnavus


organism_name: Bilophila wadsworthia


organism_name: Bifidobacterium longum


organism_name: Alistipes onderdonkii


organism_name: Acutalibacteraceae bacterium


organism_name: Gemmiger formicilis


organism_name: Weissella confusa


organism_name: Parabacteroides merdae


organism_name: Lacticaseibacillus paracasei


organism_name: Anaerostipes hadrus


organism_name: Veillonella nakazawae


organism_name: Anaerobutyricum soehngenii


organism_name: Bacteroides uniformis


organism_name: Clostridia bacterium


organism_name: Blautia faecis


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Thomasclavelia spiroformis


organism_name: Leuconostoc lactis


organism_name: Clostridium sp.


organism_name: Akkermansia sp.


organism_name: Lactococcus lactis


organism_name: Lachnospiraceae bacterium


organism_name: [Clostridium] innocuum


organism_name: Pseudolactococcus raffinolactis


organism_name: Megasphaera sp.


organism_name: Eubacterium sp.


organism_name: Blautia sp.


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome

organism_name: Klebsiella sp.


organism_name: Butyricicoccaceae bacterium


organism_name: Enterococcus italicus


organism_name: Faecalibacterium prausnitzii


organism_name: Bifidobacterium catenulatum


organism_name: Bacteroides thetaiotaomicron


organism_name: Hominenteromicrobium sp.


organism_name: Bacteroides ovatus


organism_name: Corynebacterium variabile


organism_name: Christensenellales bacterium


organism_name: Blautia faecis


organism_name: Escherichia coli


organism_name: Streptococcus salivarius


organism_name: Roseburia faecis


organism_name: Dorea longicatena


organism_name: Ruminococcus sp.


organism_name: Lachnospiraceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Phocaeicola coprophilus


organism_name: Butyricicoccus sp.


organism_name: Roseburia sp.


organism_name: Eubacterium sp.


organism_name: Anaerobutyricum hallii


organism_name: Intestinibacter bartlettii


organism_name: Lachnospira pectinoschiza


organism_name: Akkermansia sp.


organism_name: Clostridia bacterium


organism_name: Coprobacillus cateniformis


organism_name: Acidaminococcus intestini


organism_name: Alistipes putredinis


organism_name: Subdoligranulum sp.


organism_name: Evtepia gabavorous


organism_name: Bacteroides thetaiotaomicron


organism_name: Gemmiger formicilis


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Bifidobacterium adolescentis


organism_name: Bifidobacterium longum


organism_name: Bacteroides stercoris


organism_name: Lawsonibacter sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Faecalibacillus intestinalis


organism_name: Neglectibacter timonensis


organism_name: Alistipes finegoldii


organism_name: Mediterraneibacter torques


organism_name: Clostridium sp.


organism_name: Ruminococcus callidus


organism_name: Anaerovoracaceae bacterium


organism_name: Ruminococcus sp.


organism_name: Phascolarctobacterium sp.


organism_name: Akkermansia sp.


organism_name: Lachnospiraceae bacterium


organism_name: Peptococcus niger


organism_name: Clostridia bacterium


organism_name: Agathobacter rectalis


organism_name: Anaerobutyricum soehngenii


organism_name: Parabacteroides merdae


organism_name: Coprococcus sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Roseburia sp.


organism_name: Lachnospira sp.


organism_name: Anaerostipes hadrus


organism_name: Holdemanella porci


organism_name: Blautia faecis


organism_name: Butyricicoccus sp.


organism_name: Bacteroides xylanisolvens


organism_name: Streptococcus salivarius


organism_name: Blautia obeum


organism_name: Faecalibacterium prausnitzii


organism_name: Bifidobacterium bifidum


organism_name: Faecalibacterium sp.


organism_name: Blautia sp.


organism_name: Dorea sp.


organism_name: Ruminococcus callidus


organism_name: Clostridium sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Bacteroides fragilis


organism_name: Catenibacterium sp.


organism_name: Megamonas funiformis


organism_name: Peptoniphilus sp.


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Coprococcus sp.


excluded_from_refseq: derived from metagenome

organism_name: Sutterella wadsworthensis


organism_name: Hungatella sp.


organism_name: Phocaeicola vulgatus


organism_name: Escherichia coli


organism_name: Parabacteroides distasonis


organism_name: Akkermansia muciniphila


organism_name: Faecalibacterium prausnitzii


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Clostridiaceae bacterium


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Blautia hansenii


organism_name: Eubacterium sp.


organism_name: Campylobacter upsaliensis


organism_name: Bifidobacterium breve


organism_name: Collinsella sp.


organism_name: [Clostridium] leptum


organism_name: Fusobacterium sp.


organism_name: Clostridium perfringens


organism_name: Segatella copri


organism_name: Thomasclavelia ramosa


organism_name: Enterococcus faecalis


organism_name: Mediterraneibacter gnavus


organism_name: Blautia wexlerae


organism_name: Enterococcus avium


organism_name: Thomasclavelia spiroformis


organism_name: Veillonella parvula


organism_name: Sellimonas intestinalis


organism_name: Flavonifractor plautii


organism_name: Enterocloster sp.


organism_name: Anaerotignaceae bacterium


organism_name: Ruminococcus sp.


organism_name: Mediterraneibacter faecis


organism_name: Blautia caecimuris


organism_name: Anaerotignum sp.


organism_name: Escherichia coli


organism_name: Eisenbergiella sp.


organism_name: Collinsella stercoris


organism_name: Clostridium cadaveris


organism_name: Blautia producta


organism_name: Streptococcus lutetiensis


organism_name: Enterococcus faecium


organism_name: Faecalibacterium sp.


organism_name: Hominenteromicrobium sp.


organism_name: Gemmiger formicilis


organism_name: Anaerostipes hadrus


organism_name: Sutterella wadsworthensis


organism_name: Coprobacillus cateniformis


organism_name: Faecalibacillus intestinalis


organism_name: Phocaeicola coprophilus


organism_name: Faecalibacterium prausnitzii


organism_name: Streptococcus salivarius


organism_name: Acidaminococcus intestini


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: Clostridium fessum


organism_name: Blautia faecis


organism_name: Oscillospiraceae bacterium


organism_name: Ruminococcus sp.


organism_name: Intestinibacter bartlettii


organism_name: Parabacteroides merdae


organism_name: Megamonas funiformis


organism_name: Subdoligranulum sp.


organism_name: Mediterraneibacter torques


organism_name: Coprococcus sp.


organism_name: Bacteroides caccae


organism_name: Lachnospiraceae bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Phascolarctobacterium sp.


organism_name: Alistipes putredinis


organism_name: Faecalibacterium sp.


organism_name: Anaerobutyricum hallii


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Bacteroides stercoris


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Faecalibacterium prausnitzii


organism_name: Streptococcus salivarius


organism_name: Mediterraneibacter faecis


organism_name: Streptococcus parasanguinis


organism_name: Dorea formicigenerans


organism_name: Holdemanella porci


organism_name: Faecalibacillus intestinalis


organism_name: Escherichia coli


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Coprococcus sp.


organism_name: Phocaeicola coprocola


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; many frameshifted proteins


organism_name: Agathobacter rectalis


organism_name: Clostridium sp.


organism_name: Enterococcus raffinosus


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Lachnospiraceae bacterium


organism_name: Eubacterium sp.


organism_name: Christensenellaceae bacterium


organism_name: Blautia wexlerae


organism_name: Roseburia faecis


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Bacteroides fragilis


organism_name: Ligilactobacillus salivarius


organism_name: Lachnospira eligens


organism_name: Streptococcus salivarius


organism_name: Streptococcus sp.


organism_name: Waltera sp.


organism_name: Lentihominibacter sp.


organism_name: Evtepia gabavorous


organism_name: Ruminococcus sp.


organism_name: Anaerococcus obesiensis


organism_name: Pilosibacter sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Blautia stercoris


organism_name: Bifidobacterium adolescentis


organism_name: Lachnospiraceae bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Finegoldia magna


organism_name: Peptoniphilus sp.


organism_name: Lachnospira sp.


organism_name: Clostridium perfringens


organism_name: Paraclostridium sordellii


organism_name: Peptostreptococcus anaerobius


organism_name: Enterococcus faecalis


organism_name: Lactobacillus acidophilus


organism_name: Enterococcus faecium


organism_name: Parabacteroides distasonis


organism_name: Blautia sp.


organism_name: Eubacterium sp.


organism_name: Mediterraneibacter faecis


organism_name: Alistipes finegoldii


organism_name: Streptococcus sp.


organism_name: Dialister invisus


organism_name: Bifidobacterium sp.


organism_name: Bifidobacterium bifidum


organism_name: Streptococcus salivarius


organism_name: Roseburia inulinivorans


organism_name: Streptococcus infantarius


organism_name: Butyricicoccus sp.


organism_name: Veillonella nakazawae


organism_name: Dorea sp.


organism_name: Ruminococcus callidus


organism_name: Roseburia sp.


organism_name: Bacteroides xylanisolvens


organism_name: Anaerobutyricum soehngenii


organism_name: Clostridium sp.


organism_name: Oliverpabstia sp.


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Catenibacterium sp.


organism_name: Coprococcus phoceensis


organism_name: Coprococcus sp.


organism_name: Escherichia coli


organism_name: [Clostridium] leptum


organism_name: Campylobacter upsaliensis


organism_name: Lachnospira pectinoschiza


organism_name: Collinsella sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Veillonella parvula


organism_name: Enterococcus avium


organism_name: Phocaeicola vulgatus


organism_name: Faecalibacterium prausnitzii


organism_name: Veillonella atypica


organism_name: Streptococcus sp.


organism_name: Streptococcus agalactiae


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Clostridium sp.


organism_name: Fusobacterium sp.


organism_name: Mediterraneibacter faecis


organism_name: Sutterella wadsworthensis


organism_name: Segatella copri


organism_name: Eubacterium callanderi


organism_name: Streptococcus lutetiensis


organism_name: Blautia hansenii


organism_name: Mediterraneibacter sp.


organism_name: Anaerostipes caccae


organism_name: Blautia caecimuris


organism_name: Bifidobacterium breve


organism_name: Enterocloster sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small; many frameshifted proteins

organism_name: Butyricicoccus pullicaecorum


organism_name: Clostridium neonatale


organism_name: Sellimonas intestinalis


organism_name: Faecalimonas umbilicata


organism_name: Thomasclavelia spiroformis


organism_name: Eggerthella lenta


organism_name: Mediterraneibacter gnavus


organism_name: Anaerotruncus colihominis


organism_name: Streptococcus sp.


organism_name: Akkermansia muciniphila


organism_name: Limosilactobacillus vaginalis


organism_name: Enterococcus gallinarum


organism_name: Blautia hansenii


organism_name: Lachnospirales bacterium


organism_name: Bifidobacterium dentium


organism_name: Limosilactobacillus fermentum


organism_name: Butyricicoccus sp.


organism_name: Slackia sp.


organism_name: Flavonifractor plautii


organism_name: Lactobacillus kalixensis


organism_name: Thomasclavelia ramosa


organism_name: [Clostridium] innocuum


organism_name: Lactobacillus paragasseri


organism_name: Clostridium paraputrificum


organism_name: Faecalispora sporosphaeroides


organism_name: Lachnospiraceae bacterium


organism_name: Subdoligranulum sp.


organism_name: Bacteroides sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Evtepia gabavorous


organism_name: Oscillospiraceae bacterium


organism_name: Mediterraneibacter torques


organism_name: [Eubacterium] siraeum


organism_name: Bifidobacterium bifidum


organism_name: Turicibacter sp.


organism_name: Faecalibacillus intestinalis


organism_name: Methanobrevibacter smithii


organism_name: Thomasclavelia spiroformis


organism_name: Eubacterium sp.


organism_name: Barnesiella intestinihominis


organism_name: Akkermansia sp.


organism_name: Bianqueaceae bacterium


organism_name: Christensenellales bacterium


organism_name: Dialister sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Eubacteriales bacterium


organism_name: Coprococcus sp.


organism_name: Turicibacter sanguinis


organism_name: Hominenteromicrobium sp.


organism_name: Allocoprococcus comes


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Christensenellaceae bacterium


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Bifidobacterium adolescentis


organism_name: Streptococcus lutetiensis


organism_name: Clostridium sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Eubacterium sp.


organism_name: Terrisporobacter sp.


organism_name: [Clostridium] innocuum


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Adlercreutzia equolifaciens


organism_name: [Clostridium] leptum


organism_name: Segatella copri


organism_name: Anaerobutyricum hallii


organism_name: Blautia obeum


organism_name: Neglectibacter timonensis


organism_name: Ruminococcus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Clostridium perfringens


organism_name: Clostridia bacterium


organism_name: Blautia wexlerae


organism_name: Acutalibacter sp.


organism_name: Clostridium paraputrificum


organism_name: Lachnospiraceae bacterium


organism_name: Dialister invisus


organism_name: Christensenellaceae bacterium


organism_name: Faecalibacillus intestinalis


organism_name: Blautia sp.


organism_name: Eubacterium sp.


organism_name: Collinsella sp.


organism_name: Agathobacter rectalis


organism_name: Coprococcus eutactus


organism_name: Bacteroides caccae


organism_name: Alistipes onderdonkii


organism_name: Clostridium sp.


organism_name: Bacteroides thetaiotaomicron


organism_name: Bacteroides ovatus


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Roseburia inulinivorans


organism_name: Coprococcus phoceensis


organism_name: Eggerthella lenta


organism_name: Ruthenibacterium lactatiformans


organism_name: Peptostreptococcus sp.


organism_name: Blautia wexlerae


organism_name: Anaerostipes hadrus


organism_name: Klebsiella pneumoniae


organism_name: Christensenellales bacterium


organism_name: Clostridia bacterium


organism_name: Thomasclavelia ramosa


organism_name: Phocaeicola vulgatus


organism_name: Faecalibacterium sp.


organism_name: Butyricicoccus sp.


organism_name: Bifidobacterium longum


organism_name: Enterococcus faecalis


organism_name: Anaerococcus obesiensis


organism_name: Streptococcus salivarius


organism_name: Parabacteroides goldsteinii


organism_name: Intestinibacter bartlettii


organism_name: Roseburia sp.


organism_name: Pilosibacter sp.


organism_name: Blautia sp.


organism_name: Veillonella atypica


organism_name: Flavonifractor plautii


organism_name: Proteus mirabilis


organism_name: Clostridium sp.


organism_name: [Clostridium] innocuum


organism_name: Hoylesella buccalis


organism_name: Enterococcus avium


organism_name: Bifidobacterium scardovii


organism_name: Fusicatenibacter saccharivorans


organism_name: Bifidobacterium breve


organism_name: Faecalibacterium sp.


organism_name: Akkermansia muciniphila


organism_name: Mediterraneibacter gnavus


organism_name: Clostridia bacterium


organism_name: Escherichia coli


organism_name: Eisenbergiella sp.


organism_name: Veillonella parvula


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Blautia caecimuris


organism_name: Sellimonas intestinalis


organism_name: Streptococcus thermophilus


excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small

organism_name: Blautia producta


organism_name: Romboutsia timonensis


organism_name: Clostridium sp.


organism_name: Anaerostipes caccae


organism_name: Enterocloster bolteae


organism_name: Enterococcus faecium


organism_name: Bifidobacterium breve


organism_name: Enterococcus sp.


organism_name: Eubacterium sp.


organism_name: Bacteroides uniformis


organism_name: Oscillospiraceae bacterium


organism_name: Clostridia bacterium


organism_name: Butyricicoccus sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes finegoldii


organism_name: Parabacteroides distasonis


organism_name: Roseburia faecis


organism_name: Intestinibacter bartlettii


organism_name: Blautia faecis


organism_name: Oscillibacter sp.


organism_name: Lachnospiraceae bacterium


organism_name: Gemmiger formicilis


organism_name: Clostridium sp.


organism_name: Odoribacter splanchnicus


organism_name: Lachnospira sp.


organism_name: Parasutterella sp.


organism_name: Phocaeicola massiliensis


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Eubacterium sp.


organism_name: Faecalibacterium sp.


organism_name: Collinsella sp.


organism_name: Phocaeicola dorei


organism_name: Agathobacter rectalis


organism_name: Dialister invisus


organism_name: Roseburia hominis


organism_name: Romboutsia sp.


organism_name: Dorea longicatena


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Alistipes sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Bifidobacterium catenulatum


organism_name: Clostridia bacterium


organism_name: Waltera sp.


organism_name: Faecalibacillus intestinalis


organism_name: Parasutterella excrementihominis


organism_name: Butyricicoccus sp.


organism_name: Eubacterium sp.


organism_name: Dorea sp.


organism_name: Anaerostipes hadrus


organism_name: Agathobacter rectalis


organism_name: Lachnospiraceae bacterium


organism_name: Catenibacterium sp.


organism_name: Monoglobus pectinilyticus


organism_name: Barnesiella sp.


organism_name: Megamonas funiformis


organism_name: Ruminococcus sp.


organism_name: Lachnospira eligens


organism_name: Intestinibacter bartlettii


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Mediterraneibacter torques


organism_name: Akkermansia muciniphila


organism_name: Lachnospira pectinoschiza


organism_name: Bacteroides xylanisolvens


organism_name: Clostridia bacterium


organism_name: Phocaeicola dorei


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small; genus undefined

organism_name: [Eubacterium] siraeum


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Blautia sp.


organism_name: [Ruminococcus] lactaris


organism_name: Alphaproteobacteria bacterium


organism_name: [Clostridium] innocuum


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Holdemania filiformis


excluded_from_refseq: derived from metagenome

organism_name: Lactococcus lactis


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Acutalibacteraceae bacterium


organism_name: Anaerostipes sp.


organism_name: Mediterraneibacter faecis


organism_name: Lachnospiraceae bacterium


organism_name: Thomasclavelia ramosa


organism_name: Clostridium sp.


organism_name: Roseburia intestinalis


organism_name: Eisenbergiella massiliensis


organism_name: Blautia caecimuris


organism_name: Eggerthella lenta


organism_name: Faecalibacterium sp.


organism_name: Subdoligranulum sp.


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Blautia hansenii


organism_name: Clostridium perfringens


organism_name: Dialister invisus


organism_name: Streptococcus lutetiensis


organism_name: Coprococcus sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: [Clostridium] scindens


organism_name: Lawsonibacter sp.


organism_name: Bacteroides faecis


organism_name: Blautia sp.


organism_name: Clostridium paraputrificum


organism_name: Veillonella atypica


organism_name: Limosilactobacillus mucosae


organism_name: Streptococcus thermophilus


organism_name: Haemophilus parainfluenzae


organism_name: Faecalimonas umbilicata


organism_name: Enterocloster bolteae


excluded_from_refseq: derived from metagenome; many frameshifted proteins

organism_name: Veillonella parvula


organism_name: Bifidobacterium bifidum


organism_name: Ruthenibacterium lactatiformans


organism_name: Bifidobacterium longum


organism_name: Monoglobales bacterium


organism_name: Waltera sp.


organism_name: Clostridia bacterium


organism_name: [Eubacterium] siraeum


organism_name: Acutalibacteraceae bacterium


organism_name: Bilophila wadsworthia


organism_name: Lachnospiraceae bacterium


organism_name: Blautia wexlerae


organism_name: Butyricimonas faecihominis


organism_name: Agathobacter rectalis


organism_name: Anaerostipes hadrus


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome

organism_name: Butyricicoccus sp.


organism_name: Blautia massiliensis (ex Durand et al. 2017)


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Roseburia intestinalis


organism_name: Eubacterium ramulus


organism_name: Clostridium sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Bacteroides cellulosilyticus


organism_name: Mediterraneibacter faecis


organism_name: Lachnospira eligens


organism_name: Thomasclavelia spiroformis


organism_name: Coprococcus sp.


organism_name: Blautia sp.


organism_name: Odoribacter splanchnicus


organism_name: Faecalibacillus intestinalis


organism_name: Blautia stercoris


organism_name: Bacteroides uniformis


organism_name: Faecalibacterium prausnitzii


organism_name: Anaerotignum faecicola


organism_name: Streptococcus salivarius


organism_name: Faecalitalea cylindroides


organism_name: Romboutsia timonensis


organism_name: Flavonifractor plautii


organism_name: Lachnospiraceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Cloacibacillus evryensis


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined


organism_name: Agathobacter rectalis


organism_name: Christensenellales bacterium


organism_name: Alistipes sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Hominenteromicrobium sp.


organism_name: Ruminococcus sp.


organism_name: Roseburia faecis


organism_name: [Clostridium] leptum


organism_name: Hominisplanchenecus sp.


organism_name: Adlercreutzia equolifaciens


organism_name: Lachnospirales bacterium


organism_name: Anaerobutyricum hallii


organism_name: Coprococcus sp.


organism_name: Flavonifractor plautii


organism_name: Anaerostipes hadrus


organism_name: Dysosmobacter sp.


organism_name: Enterococcus faecium


organism_name: Collinsella sp.


organism_name: Streptococcus salivarius


organism_name: Oscillospiraceae bacterium


organism_name: [Clostridium] symbiosum


organism_name: Phascolarctobacterium faecium


organism_name: Acutalibacteraceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; many frameshifted proteins

organism_name: Alistipes sp.


organism_name: Bacilli bacterium


organism_name: Clostridia bacterium


organism_name: Eubacterium sp.


organism_name: Segatella copri


organism_name: Lachnospiraceae bacterium


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Methanobrevibacter smithii


organism_name: Christensenellales bacterium


organism_name: Bacteroides uniformis


organism_name: [Eubacterium] siraeum


excluded_from_refseq: derived from metagenome; genome length too large

organism_name: Neglectibacter timonensis


organism_name: Megamonas funiformis


organism_name: Gemmiger formicilis


organism_name: Phocaeicola massiliensis


organism_name: Subdoligranulum sp.


organism_name: Blautia wexlerae


organism_name: Alistipes shahii


organism_name: Parabacteroides merdae


organism_name: [Clostridium] innocuum


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Phocaeicola vulgatus


organism_name: Clostridium sp.


organism_name: Mediterraneibacter torques


organism_name: Eubacterium ventriosum


organism_name: Lachnospira eligens


organism_name: Oscillospiraceae bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Clostridia bacterium


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Coprococcus phoceensis


organism_name: Ruminococcus sp.


organism_name: Blautia sp.


organism_name: Coprococcus sp.


organism_name: Christensenellales bacterium


organism_name: Ruminococcus callidus


organism_name: Eubacterium sp.


organism_name: Lactococcus lactis


organism_name: Odoribacter splanchnicus


organism_name: Alistipes shahii


organism_name: Mediterraneibacter faecis


organism_name: Bacilli bacterium


organism_name: Alistipes putredinis


organism_name: Bacteroides faecis


organism_name: Faecalibacterium prausnitzii


organism_name: Parabacteroides distasonis


organism_name: Paraclostridium sordellii


organism_name: Eggerthella lenta


organism_name: Bacteroides stercoris


organism_name: Lactobacillaceae bacterium


organism_name: Clostridium perfringens


organism_name: Bifidobacterium longum


organism_name: Clostridia bacterium


organism_name: Akkermansia sp.


organism_name: Lachnospira eligens


organism_name: Streptococcus salivarius


organism_name: Oscillospiraceae bacterium


organism_name: Ruminococcus sp.


organism_name: Bacilli bacterium


organism_name: Dysosmobacter welbionis


organism_name: Christensenellales bacterium


organism_name: Waltera sp.


organism_name: Paraprevotella clara


organism_name: Faecalibacterium prausnitzii


organism_name: Barnesiella intestinihominis


organism_name: Desulfovibrio piger


organism_name: Eubacteriales bacterium


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Faecalitalea cylindroides


organism_name: Bifidobacterium adolescentis


organism_name: Phocaeicola coprocola


organism_name: Evtepia gabavorous


organism_name: Sutterella wadsworthensis


organism_name: Faecalibacillus intestinalis


organism_name: Eubacterium sp.


organism_name: Gallintestinimicrobium sp.


organism_name: [Ruminococcus] lactaris


organism_name: Roseburia sp.


organism_name: Intestinibacter bartlettii


organism_name: Christensenellales bacterium


organism_name: Monoglobus pectinilyticus


organism_name: Lachnospiraceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small; many frameshifted proteins

organism_name: Dysosmobacter welbionis


organism_name: Anaerobutyricum hallii


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Lawsonibacter sp.


organism_name: Longibaculum sp.


organism_name: Oscillospiraceae bacterium


excluded_from_refseq: abnormal gene to sequence ratio; annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: Dialister invisus


organism_name: Agathobacter rectalis


organism_name: Faecalibacillus intestinalis


organism_name: Dorea longicatena


organism_name: Anaerostipes sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Fusicatenibacter saccharivorans


organism_name: Gemmiger formicilis


organism_name: [Clostridium] scindens


organism_name: Bacteroides ovatus


organism_name: Faecalibacterium sp.


organism_name: Coprobacillus cateniformis


organism_name: Bifidobacterium adolescentis


organism_name: Butyricicoccus sp.


organism_name: Neglectibacter timonensis


organism_name: Coprococcus sp.


organism_name: Phocaeicola vulgatus


organism_name: Subdoligranulum sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Acutalibacteraceae bacterium


excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small

organism_name: Blautia producta


organism_name: Ruminococcus sp.


organism_name: Faecalibacillus faecis


organism_name: Blautia sp.


organism_name: Bacteroides fragilis


organism_name: Blautia wexlerae


organism_name: Mediterraneibacter gnavus


organism_name: Anaerostipes hadrus


organism_name: Ruthenibacterium lactatiformans


organism_name: Allocoprococcus comes


organism_name: Enterocloster bolteae


organism_name: Flavonifractor plautii


organism_name: Finegoldia sp.


organism_name: Bacteroides caccae


organism_name: Peptoniphilus sp.


organism_name: Anaerococcus sp.


organism_name: Bifidobacterium longum


organism_name: Mediterraneibacter faecis


asm_submitter: National Center for Biotechnology Information

excluded_from_refseq: from large multi-isolate project

organism_name: Streptococcus pneumoniae


excluded_from_refseq: derived from metagenome

organism_name: Parabacteroides distasonis


organism_name: Alistipes onderdonkii


organism_name: Veillonella sp.


organism_name: Eggerthella lenta


organism_name: Thomasclavelia ramosa


infraspecific_name: strain=GPSC904; 9


organism_name: Lacrimispora saccharolytica


organism_name: Adlercreutzia equolifaciens subsp. celatus


organism_name: Mediterraneibacter torques


organism_name: Streptococcus salivarius


organism_name: Parasutterella excrementihominis


organism_name: Blautia sp.


organism_name: Blautia caecimuris


organism_name: Sellimonas intestinalis


organism_name: Anaerostipes caccae


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Peptococcaceae bacterium


organism_name: Enterocloster sp.


organism_name: Anaerovoracaceae bacterium


organism_name: Acutalibacter sp.


organism_name: Odoribacter splanchnicus


organism_name: Romboutsia timonensis


organism_name: [Clostridium] innocuum


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Lactococcus lactis


organism_name: Eisenbergiella sp.


organism_name: Enterocloster aldenensis


organism_name: Amedibacterium intestinale


organism_name: Anaerofustis stercorihominis


organism_name: Lachnospiraceae bacterium


organism_name: [Clostridium] leptum


organism_name: Akkermansia sp.


organism_name: Enterococcus avium


organism_name: Bacteroides thetaiotaomicron


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Alistipes finegoldii


organism_name: Segatella copri


organism_name: Acutalibacteraceae bacterium


organism_name: Clostridia bacterium


organism_name: Hominenteromicrobium sp.


organism_name: Ruminococcus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Bacilli bacterium


organism_name: Streptococcus salivarius


organism_name: Sutterella wadsworthensis


organism_name: Gallintestinimicrobium sp.


organism_name: Lachnospiraceae bacterium


organism_name: Mediterraneibacter faecis


organism_name: Christensenellales bacterium


organism_name: Prevotella sp.


organism_name: Dialister invisus


organism_name: Bacteroides ovatus


organism_name: Parabacteroides merdae


organism_name: Alistipes shahii


organism_name: Parabacteroides distasonis


organism_name: Eubacterium ventriosum


organism_name: Coprococcus sp.


organism_name: Roseburia sp.


organism_name: Phascolarctobacterium succinatutens


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: Evtepia sp.


organism_name: Holdemanella sp.


organism_name: Gemmiger formicilis


organism_name: Subdoligranulum sp.


organism_name: Ruminococcus sp.


organism_name: Streptococcus salivarius


organism_name: Bifidobacterium angulatum


organism_name: Acutalibacteraceae bacterium


organism_name: Anaerobutyricum soehngenii


organism_name: Angelakisella sp.


organism_name: Odoribacter splanchnicus


organism_name: Barnesiella intestinihominis


organism_name: Eubacterium sp.


organism_name: Phocaeicola massiliensis


organism_name: Peptoniphilaceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Peptoniphilus grossensis


organism_name: Peptoniphilus lacrimalis


organism_name: Clostridium perfringens


organism_name: Staphylococcus simulans


organism_name: Intestinibacter bartlettii


organism_name: Porphyromonas sp.


organism_name: Anaerotignum faecicola


organism_name: Turicibacter sanguinis


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Faecalibacterium sp.


organism_name: Allocoprococcus comes


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Coprococcus sp.


organism_name: Ruminococcus sp.


organism_name: Agathobacter rectalis


organism_name: Streptococcus sp.


organism_name: Streptococcus pneumoniae


organism_name: Roseburia faecis


organism_name: Dorea sp.


organism_name: Phocaeicola vulgatus


organism_name: Clostridium sp.


organism_name: Lactococcus lactis


organism_name: Collinsella sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Bacteroides sp.


organism_name: Lachnospiraceae bacterium


organism_name: Waltera sp.


organism_name: Bilophila wadsworthia


organism_name: Oscillibacter sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Butyricimonas virosa


organism_name: Eubacterium sp.


organism_name: Veillonella sp.


organism_name: Ruminococcus sp.


organism_name: Bifidobacterium bifidum


organism_name: Streptococcus pneumoniae


organism_name: Akkermansia muciniphila


organism_name: Streptococcus sp.


organism_name: Anaerostipes hadrus


organism_name: Roseburia inulinivorans


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Alphaproteobacteria bacterium


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Mediterraneibacter torques


organism_name: Lachnospiraceae bacterium


organism_name: Paraclostridium sordellii


organism_name: Enterococcus faecalis


organism_name: [Clostridium] leptum


organism_name: Faecalibacterium prausnitzii


organism_name: Faecalibacterium sp.


organism_name: Blautia wexlerae


organism_name: Christensenellales bacterium


organism_name: Pseudolactococcus raffinolactis


organism_name: Acutalibacteraceae bacterium


organism_name: Streptococcus pneumoniae


organism_name: Alistipes putredinis


organism_name: Ruminococcus sp.


organism_name: Bacteroides fragilis


organism_name: Bacteroides thetaiotaomicron


organism_name: Lacticaseibacillus paracasei


organism_name: Weissella confusa


organism_name: Alistipes onderdonkii


organism_name: [Clostridium] innocuum


organism_name: Enterococcus italicus


organism_name: Collinsella sp.


organism_name: Atopobiaceae bacterium


organism_name: Bifidobacterium longum


organism_name: Mediterraneibacter faecis


organism_name: Faecalibacillus intestinalis


organism_name: Anaerobutyricum hallii


organism_name: Klebsiella pneumoniae


organism_name: Streptococcus pneumoniae


organism_name: Megasphaera sp.


organism_name: Blautia sp.


organism_name: Lachnospiraceae bacterium


organism_name: Lacticaseibacillus rhamnosus


organism_name: Bacteroides uniformis


organism_name: Flavonifractor plautii


organism_name: Finegoldia magna


organism_name: Bifidobacterium angulatum


asm_submitter: NIVIP

assembly_level: Complete Genome

infraspecific_name: strain=PD 8705

organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens


infraspecific_name: strain=PD 8682


infraspecific_name: strain=PD 8683


infraspecific_name: strain=PD 8681


asm_submitter: Hangzhou Medical College

organism_name: Pseudomonas aeruginosa


asm_submitter: Independent University, Bangladesh

organism_name: Listeria innocua


asm_submitter: The University of Burdwan

organism_name: Klebsiella pasteurii


organism_name: Hominisplanchenecus sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Dorea formicigenerans


organism_name: Enterococcus sp.


organism_name: Enterococcus avium


organism_name: Bifidobacterium catenulatum


organism_name: Gemmiger sp.


organism_name: Clostridia bacterium


organism_name: Thomasclavelia spiroformis


organism_name: Streptococcus pneumoniae


organism_name: Eubacterium ventriosum


organism_name: Catenibacterium sp.


organism_name: Gallintestinimicrobium sp.


infraspecific_name: strain=No GPSC


organism_name: Christensenellales bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; many frameshifted proteins

organism_name: Bifidobacterium sp.


organism_name: Blautia wexlerae


organism_name: Acutalibacteraceae bacterium


organism_name: Streptococcus sp.


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Hominenteromicrobium sp.


organism_name: Ruminococcus sp.


organism_name: Bacteroides stercoris


organism_name: Phocaeicola massiliensis


organism_name: Dorea longicatena


organism_name: Collinsella sp.


organism_name: Alistipes putredinis


organism_name: Streptococcus pneumoniae


organism_name: Roseburia faecis


organism_name: Phascolarctobacterium succinatutens


organism_name: Faecalibacterium sp.


organism_name: Dysosmobacter sp.


asm_submitter: The First Affiliated Hospital of Hebei North University

organism_name: Klebsiella pneumoniae


asm_submitter: GDPU


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


excluded_from_refseq: fragmented assembly; from large multi-isolate project


organism_name: Peptoniphilus sp.


organism_name: Anaerococcus obesiensis


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Streptococcus thermophilus


organism_name: Escherichia coli


organism_name: Anaerobutyricum hallii


organism_name: Thomasclavelia ramosa


organism_name: Anaerostipes hadrus


organism_name: Blautia wexlerae


organism_name: Mediterraneibacter faecis


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Oliverpabstia sp.


organism_name: [Clostridium] leptum


organism_name: Dorea longicatena


organism_name: Mediterraneibacter torques


organism_name: Bacteroides stercoris


organism_name: Anaerostipes sp.


organism_name: Blautia faecis


organism_name: Streptococcus constellatus


organism_name: Collinsella sp.


organism_name: Megasphaera massiliensis


organism_name: Terrisporobacter sp.


organism_name: Clostridia bacterium


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Roseburia faecis


organism_name: Coriobacteriaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Waltera sp.


organism_name: Ruminococcus sp.


organism_name: Coprococcus sp.


organism_name: Hominilimicola sp.


organism_name: Ruminococcus bromii


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome

organism_name: Butyricicoccus sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Bifidobacterium bifidum


organism_name: Acutalibacteraceae bacterium


organism_name: Streptococcus pneumoniae


organism_name: Clostridium sp.


organism_name: Enterococcus faecium


organism_name: Bifidobacterium pullorum


organism_name: Subdoligranulum sp.


organism_name: Collinsella sp.


organism_name: Phocaeicola vulgatus


organism_name: Sellimonas intestinalis


organism_name: Clostridia bacterium


organism_name: Akkermansia muciniphila


organism_name: Bifidobacterium adolescentis


organism_name: Gemmiger sp.


organism_name: Anaerostipes hadrus


organism_name: Evtepia gabavorous


organism_name: Christensenellales bacterium


organism_name: Frisingicoccus sp.


organism_name: Romboutsia timonensis


organism_name: Acutalibacteraceae bacterium


organism_name: Muribaculaceae bacterium


organism_name: Streptococcus pneumoniae


organism_name: Blautia wexlerae


organism_name: [Ruminococcus] lactaris


organism_name: Acutalibacter sp.


organism_name: Ruminococcus callidus


organism_name: Eubacterium sp.


organism_name: Roseburia sp.


organism_name: Faecalibacterium sp.


organism_name: Mediterraneibacter faecis


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome


organism_name: Anaerobutyricum hallii


organism_name: Bacteroides uniformis


organism_name: Adlercreutzia sp.


organism_name: Agathobacter rectalis


organism_name: Bacteroides stercoris


organism_name: Ruminococcus sp.


organism_name: Eggerthellaceae bacterium


excluded_from_refseq: derived from metagenome; many frameshifted proteins

organism_name: Mediterraneibacter torques


organism_name: Streptococcus pneumoniae


organism_name: Blautia faecis


organism_name: Acutalibacteraceae bacterium


organism_name: Lachnospira eligens


organism_name: Longibaculum sp.


organism_name: Phascolarctobacterium faecium


organism_name: Anaerostipes hadrus


organism_name: Faecalibacillus intestinalis


organism_name: Monoglobus pectinilyticus


organism_name: Lachnospira sp.


organism_name: Bacteroides faecis


organism_name: Alphaproteobacteria bacterium


organism_name: Mediterraneibacter gnavus


organism_name: Clostridia bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Parabacteroides distasonis


organism_name: Clostridium sp.


organism_name: Alistipes onderdonkii


organism_name: Butyribacter sp.


organism_name: Prevotella sp.


organism_name: Hominenteromicrobium sp.


organism_name: Longicatena caecimuris


organism_name: Parasutterella excrementihominis


organism_name: Alistipes sp.


organism_name: Lachnospira pectinoschiza


organism_name: [Eubacterium] siraeum


organism_name: Roseburia hominis


organism_name: Eubacterium sp.


organism_name: Eggerthella lenta


organism_name: Bifidobacterium longum


organism_name: Lachnospiraceae bacterium


organism_name: Lachnospirales bacterium


organism_name: Faecalibacillus intestinalis


organism_name: Streptococcus pneumoniae


organism_name: Eubacterium ventriosum


organism_name: Coprococcus sp.


organism_name: Alistipes shahii


organism_name: Blautia sp.


organism_name: Allobaculum sp.


organism_name: Odoribacter laneus


organism_name: Streptococcus salivarius


organism_name: Christensenellaceae bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Hominenteromicrobium sp.


organism_name: Subdoligranulum sp.


organism_name: Monoglobus pectinilyticus


organism_name: Lachnospira eligens


organism_name: Butyricicoccus sp.


organism_name: Evtepia gabavorous


organism_name: Gemmiger formicilis


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome


excluded_from_refseq: from large multi-isolate project

organism_name: Streptococcus pneumoniae


excluded_from_refseq: derived from metagenome

organism_name: Alistipes inops


organism_name: Roseburia sp.


organism_name: Lacticaseibacillus paracasei


excluded_from_refseq: abnormal gene to sequence ratio; annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: Collinsella sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Clostridia bacterium


organism_name: Blautia wexlerae


organism_name: Acutalibacteraceae bacterium


organism_name: Ruminococcus sp.


organism_name: Bacteroides stercoris


organism_name: Blautia obeum


organism_name: Mediterraneibacter faecis


organism_name: Lachnospiraceae bacterium


organism_name: Bacteroides thetaiotaomicron


organism_name: Bacteroides fragilis


organism_name: Clostridium sp.


organism_name: Alistipes putredinis


organism_name: Streptococcus pneumoniae


organism_name: Mediterraneibacter torques


organism_name: [Ruminococcus] lactaris


organism_name: Hominilimicola sp.


organism_name: Eggerthellaceae bacterium


organism_name: Bacteroidales bacterium


organism_name: Waltera sp.


organism_name: Clostridia bacterium


organism_name: Phocaeicola vulgatus


asm_submitter: Public Health England

organism_name: Campylobacter jejuni


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Eggerthella lenta


organism_name: Peptoniphilus grossensis


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: Collinsella sp.


organism_name: Bifidobacterium longum


organism_name: Oscillospiraceae bacterium


organism_name: Anaerococcus obesiensis


organism_name: Eubacterium sp.


organism_name: Streptococcus pneumoniae


organism_name: Lachnospiraceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Flavonifractor plautii


organism_name: Methanobrevibacter smithii


organism_name: Blautia wexlerae


organism_name: Agathobacter rectalis


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Ruminococcus sp.


organism_name: Christensenellales bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Streptococcus thermophilus


organism_name: Anaerobutyricum hallii


organism_name: Angelakisella sp.


organism_name: Clostridium sp.


organism_name: Lachnospira pectinoschiza


organism_name: Pseudoruminococcus sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Bacteroides uniformis


organism_name: Streptococcus pneumoniae


organism_name: Odoribacter splanchnicus


organism_name: Bifidobacterium angulatum


organism_name: Dialister invisus


organism_name: Butyricimonas faecihominis


organism_name: Enterococcus lactis


organism_name: Collinsella sp.


organism_name: Bifidobacterium adolescentis


organism_name: Ezakiella sp.


organism_name: Bacteroides ovatus


organism_name: Parabacteroides distasonis


organism_name: Streptococcus salivarius


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Fenollaria timonensis


organism_name: Peptoniphilus grossensis


organism_name: Thomasclavelia spiroformis


organism_name: Turicibacter sanguinis


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Streptococcus pneumoniae


organism_name: Christensenellales bacterium


organism_name: [Eubacterium] siraeum


organism_name: Oscillospiraceae bacterium


organism_name: Akkermansia sp.


organism_name: Dysosmobacter sp.


organism_name: Parasutterella sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Gallintestinimicrobium sp.


organism_name: Anaerostipes hadrus


organism_name: Roseburia faecis


organism_name: Bifidobacterium bifidum


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Butyricimonas paravirosa


organism_name: Bilophila wadsworthia


organism_name: Ruminococcus sp.


organism_name: Barnesiella intestinihominis


organism_name: Eshraghiella crossota


organism_name: Oscillibacter sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Streptococcus pneumoniae


organism_name: Acutalibacteraceae bacterium


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome; many frameshifted proteins

organism_name: Coprococcus phoceensis


organism_name: Oscillospiraceae bacterium


organism_name: Pseudoruminococcus massiliensis


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined


organism_name: Clostridium perfringens


organism_name: Coprococcus eutactus


organism_name: Hominilimicola sp.


organism_name: Collinsella aerofaciens


organism_name: Lachnospiraceae bacterium


organism_name: Monoglobus pectinilyticus


organism_name: Anaerostipes sp.


organism_name: Streptococcus thermophilus


organism_name: Agathobacter rectalis


organism_name: [Clostridium] leptum


organism_name: Blautia sp.


organism_name: Faecalibacillus intestinalis


organism_name: Roseburia faecis


organism_name: Subdoligranulum sp.


organism_name: Roseburia intestinalis


organism_name: Mediterraneibacter faecis


organism_name: Sellimonas intestinalis


organism_name: Eubacterium ramulus


organism_name: Clostridiaceae bacterium


organism_name: Ruminococcus sp.


organism_name: Dialister invisus


organism_name: Clostridia bacterium


organism_name: Mediterraneibacter torques


organism_name: Thomasclavelia spiroformis


organism_name: Anaerotignum lactatifermentans


organism_name: Clostridium sp.


organism_name: Streptococcus pneumoniae


organism_name: Acutalibacter sp.


organism_name: Streptococcus salivarius


organism_name: Evtepia gabavorous


organism_name: Parasutterella sp.


organism_name: Alistipes finegoldii


organism_name: Flavonifractor plautii


organism_name: Bilophila wadsworthia


organism_name: Anaerobutyricum hallii


organism_name: Anaerovoracaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Gordonibacter urolithinfaciens


organism_name: Odoribacter splanchnicus


organism_name: Intestinibacter bartlettii


organism_name: Dysosmobacter welbionis


organism_name: Hominisplanchenecus sp.


organism_name: Lachnospirales bacterium


organism_name: Streptococcus pneumoniae


organism_name: Clostridium fessum


organism_name: Clostridia bacterium


organism_name: Gallintestinimicrobium sp.


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Bacteroides thetaiotaomicron


organism_name: Eisenbergiella massiliensis


organism_name: Longicatena caecimuris


organism_name: Hydrogeniiclostridium sp.


organism_name: Negativibacillus massiliensis


organism_name: Christensenellales bacterium


organism_name: Anaerovoracaceae bacterium


organism_name: Fusicatenibacter sp.


organism_name: Alistipes onderdonkii


organism_name: Mediterraneibacter gnavus


organism_name: Clostridium butyricum


organism_name: Lacrimispora saccharolytica


organism_name: Eggerthella lenta


organism_name: Streptococcus pneumoniae


organism_name: Faecalimonas sp.


organism_name: Bacteroides uniformis


organism_name: Faecalibacterium sp.


organism_name: Lachnospiraceae bacterium


organism_name: Leuconostoc gelidum


organism_name: Clostridium sp.


organism_name: Lancefieldella rimae


organism_name: Blautia wexlerae


organism_name: Acutalibacter sp.


organism_name: Bifidobacterium longum


organism_name: Lachnospira eligens


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Ruminococcus sp.


organism_name: Bifidobacterium adolescentis


organism_name: Lachnospira sp.


organism_name: Anaerostipes hadrus


organism_name: Dorea sp.


organism_name: Eubacterium sp.


organism_name: Waltera sp.


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Blautia hansenii


organism_name: [Ruminococcus] lactaris


organism_name: Clostridia bacterium


organism_name: Akkermansia sp.


organism_name: Alistipes finegoldii


organism_name: Thomasclavelia ramosa


organism_name: Alistipes putredinis


organism_name: Faecalibacterium prausnitzii


organism_name: Oscillospiraceae bacterium


organism_name: Alphaproteobacteria bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; many frameshifted proteins


organism_name: Romboutsia timonensis


organism_name: Bacteroides intestinalis


organism_name: Adlercreutzia equolifaciens


organism_name: Hominenteromicrobium sp.


organism_name: Roseburia faecis


organism_name: Hominilimicola sp.


organism_name: Eggerthellaceae bacterium


organism_name: Lachnospirales bacterium


organism_name: Christensenellales bacterium


organism_name: Marvinbryantia sp.


organism_name: Lachnospiraceae bacterium


organism_name: Mediterraneibacter torques


organism_name: Gemmiger formicilis


organism_name: Streptococcus pneumoniae


organism_name: Blautia faecis


organism_name: Monoglobus pectinilyticus


organism_name: Oscillibacter sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Enterocloster sp.


organism_name: Oscillospiraceae bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Longicatena caecimuris


organism_name: Allocoprococcus comes


organism_name: Bacteroides stercoris


organism_name: Alistipes shahii


organism_name: Roseburia sp.


organism_name: Anaerovoracaceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Christensenellaceae bacterium


organism_name: Ruthenibacterium sp.


organism_name: Akkermansia muciniphila


organism_name: Streptococcus pneumoniae


organism_name: Anaerobutyricum soehngenii


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Roseburia hominis


organism_name: Desulfovibrio fairfieldensis


organism_name: Anaeromassilibacillus sp.


organism_name: Clostridia bacterium


organism_name: Dysosmobacter welbionis


organism_name: Ruminococcus sp.


organism_name: Dorea sp.


organism_name: Parabacteroides distasonis


organism_name: Eubacterium ventriosum


organism_name: Streptococcus sp.


organism_name: Gallintestinimicrobium sp.


organism_name: Evtepia gabavorous


organism_name: Eisenbergiella massiliensis


organism_name: Catenibacillus sp.


organism_name: Negativibacillus sp.


organism_name: Streptococcus pneumoniae


organism_name: Frisingicoccus sp.


organism_name: Anaerovoracaceae bacterium


organism_name: Phascolarctobacterium faecium


organism_name: Oscillospiraceae bacterium


organism_name: Parabacteroides sp.


organism_name: Parasutterella sp.


organism_name: Clostridium fessum


organism_name: Clostridium sp.


organism_name: Bacteroides thetaiotaomicron


organism_name: Phocaeicola vulgatus


organism_name: Mediterraneibacter gnavus


organism_name: Eggerthella lenta


organism_name: Blautia obeum


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Gordonibacter urolithinfaciens


organism_name: Ruminococcus sp.


organism_name: Blautia wexlerae


organism_name: Streptococcus pneumoniae


organism_name: Mediterraneibacter faecis


organism_name: Lachnospiraceae bacterium


organism_name: Hominisplanchenecus sp.


organism_name: Dorea sp.


organism_name: Bifidobacterium angulatum


organism_name: Allocoprococcus comes


organism_name: Akkermansia sp.


organism_name: Lachnospira sp.


organism_name: Oscillibacter sp.


organism_name: Hominilimicola sp.


organism_name: Faecalibacterium sp.


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Bacteroides ovatus


organism_name: Clostridium sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Ruminococcus callidus


organism_name: Anaerostipes sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Bifidobacterium catenulatum


organism_name: Lachnospiraceae bacterium


organism_name: Phocaeicola vulgatus


organism_name: Faecalibacillus intestinalis


organism_name: Pilosibacter sp.


organism_name: Alistipes finegoldii


excluded_from_refseq: from large multi-isolate project

organism_name: Streptococcus pneumoniae


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome

organism_name: Butyricicoccus sp.


organism_name: Lachnospirales bacterium


excluded_from_refseq: derived from metagenome

organism_name: Dialister invisus


organism_name: Monoglobus pectinilyticus


organism_name: Anaerotignum faecicola


organism_name: Clostridium fessum


organism_name: Agathobacter rectalis


organism_name: Anaerobutyricum hallii


organism_name: Ruthenibacterium lactatiformans


organism_name: Fusicatenibacter saccharivorans


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Oscillospiraceae bacterium


asm_submitter: University of Melbourne

organism_name: Moraxella catarrhalis


organism_name: Staphylococcus aureus


organism_name: Faecalibacterium prausnitzii


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small; many frameshifted proteins

organism_name: Roseburia inulinivorans


organism_name: Campylobacter sp.


organism_name: Streptococcus pneumoniae


asm_submitter: Wellcome Sanger Institute

organism_name: Klebsiella pneumoniae


organism_name: [Clostridium] leptum


organism_name: Bacteroides fragilis


organism_name: Anaerovoracaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Eisenbergiella tayi


organism_name: Lachnospira eligens


organism_name: Alistipes ihumii


organism_name: Acutalibacteraceae bacterium


organism_name: Bifidobacterium bifidum


organism_name: Anaerostipes hadrus


organism_name: Dorea sp.


organism_name: Lachnospira sp.


organism_name: Varibaculum timonense


organism_name: Gallintestinimicrobium sp.


organism_name: Ruminococcus sp.


organism_name: Evtepia sp.


organism_name: Subdoligranulum sp.


organism_name: Streptococcus pneumoniae


organism_name: Collinsella sp.


organism_name: Alistipes finegoldii


organism_name: Gemmiger formicilis


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Parvimonas micra


organism_name: Peptoniphilus sp.


organism_name: Emergencia timonensis


organism_name: Akkermansia sp.


organism_name: Bifidobacterium adolescentis


organism_name: Flavonifractor plautii


organism_name: Mediterraneibacter gnavus


organism_name: Enterocloster sp.


organism_name: Bacteroides uniformis


organism_name: Eggerthella lenta


organism_name: Acidaminococcus intestini


organism_name: Lacrimispora saccharolytica


organism_name: Megasphaera sp.


organism_name: Bifidobacterium longum


organism_name: Ruminococcus sp.


organism_name: Sellimonas intestinalis


organism_name: Mediterraneibacter torques


organism_name: [Clostridium] scindens


organism_name: Blautia sp.


organism_name: Blautia hansenii


organism_name: Anaeromassilibacillus sp.


organism_name: Bilophila wadsworthia


organism_name: Longicatena caecimuris


organism_name: Akkermansia muciniphila


organism_name: Thomasclavelia ramosa


organism_name: Alistipes shahii


organism_name: [Clostridium] innocuum


organism_name: Bacteroides cellulosilyticus


organism_name: Clostridioides difficile


organism_name: Escherichia coli


organism_name: Lachnospiraceae bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Mediterraneibacter faecis


organism_name: Agathobacter rectalis


organism_name: Faecalibacillus intestinalis


organism_name: Streptococcus thermophilus


organism_name: Streptococcus pneumoniae


organism_name: Ruminococcus sp.


organism_name: Anaerostipes hadrus


organism_name: Faecalibacterium prausnitzii


organism_name: Coprococcus sp.


organism_name: Hominilimicola sp.


organism_name: [Clostridium] leptum


organism_name: Hominenteromicrobium sp.


organism_name: Phocaeicola vulgatus


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Barnesiella intestinihominis


organism_name: Longicatena caecimuris


organism_name: Ruthenibacterium sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Lachnospiraceae bacterium


organism_name: Christensenellales bacterium


organism_name: Monoglobus pectinilyticus


organism_name: Escherichia coli


organism_name: Streptococcus pneumoniae


organism_name: Parabacteroides distasonis


organism_name: Bacteroides caccae


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Collinsella sp.


organism_name: Eubacterium sp.


organism_name: Ruminococcus sp.


organism_name: Faecalibacillus sp.


organism_name: Megamonas funiformis


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Anaerobutyricum soehngenii


organism_name: Dorea formicigenerans


organism_name: Roseburia faecis


organism_name: Blautia sp.


organism_name: Mediterraneibacter torques


organism_name: Romboutsia timonensis


organism_name: Blautia stercoris


organism_name: Dialister invisus


organism_name: Blautia wexlerae


organism_name: Streptococcus pneumoniae


organism_name: Blautia faecis


organism_name: Bifidobacterium bifidum


organism_name: Anaerotignum lactatifermentans


organism_name: Peptoniphilus sp.


organism_name: Eubacterium sp.


organism_name: Bacteroides xylanisolvens


organism_name: Dorea sp.


organism_name: Gemmiger formicilis


organism_name: Clostridium perfringens


organism_name: Mediterraneibacter faecis


organism_name: Faecalibacterium prausnitzii


organism_name: Allocoprococcus comes


organism_name: Subdoligranulum sp.


organism_name: Bifidobacterium adolescentis


organism_name: Bacteroides fragilis


organism_name: Enterococcus faecium


organism_name: Streptococcus pneumoniae


organism_name: Enterocloster sp.


organism_name: Alistipes putredinis


organism_name: Dysosmobacter sp.


organism_name: Alistipes onderdonkii


organism_name: Bacteroides sp.


organism_name: Akkermansia muciniphila


organism_name: Butyricicoccus sp.


organism_name: Clostridium fessum


organism_name: Odoribacter splanchnicus


organism_name: Bacteroides nordii


organism_name: Pilosibacter sp.


organism_name: Eggerthella lenta


organism_name: Lachnospiraceae bacterium


organism_name: Evtepia gabavorous


organism_name: Gallintestinimicrobium sp.


organism_name: Ruminococcus sp.


organism_name: Streptococcus pneumoniae


organism_name: Eggerthellaceae bacterium


organism_name: Bifidobacterium longum


organism_name: Waltera sp.


organism_name: Parasutterella sp.


organism_name: Monoglobales bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small; genus undefined

organism_name: Christensenellales bacterium


organism_name: Faecalibacterium sp.


organism_name: Lactobacillus iners


organism_name: Negativibacillus sp.


organism_name: Bacteroides uniformis


organism_name: Parabacteroides merdae


organism_name: Megasphaera lornae


organism_name: Gardnerella vaginalis


organism_name: Collinsella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Clostridium sp.


organism_name: Streptococcus pneumoniae


organism_name: Lachnospira pectinoschiza


organism_name: Enterocloster sp.


organism_name: Slackia sp.


organism_name: Butyricicoccus sp.


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly


organism_name: Ruminococcus sp.


organism_name: Streptococcus salivarius


organism_name: Lachnospiraceae bacterium


organism_name: Blautia faecis


organism_name: Faecalibacterium sp.


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Evtepia gabavorous


organism_name: Faecalibacillus intestinalis


organism_name: Anaerovoracaceae bacterium


organism_name: Eubacterium sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Dorea formicigenerans


organism_name: Streptococcus pneumoniae


organism_name: Collinsella sp.


organism_name: Dialister invisus


organism_name: Enterococcus faecium


organism_name: Coprococcus eutactus


organism_name: Bacteroides thetaiotaomicron


organism_name: Oscillospiraceae bacterium


organism_name: Parabacteroides distasonis


organism_name: Paraclostridium sordellii


organism_name: Streptococcus agalactiae


organism_name: Peptoniphilus senegalensis


organism_name: Mediterraneibacter torques


organism_name: Methanobrevibacter smithii


organism_name: Anaerobutyricum hallii


organism_name: Acutalibacteraceae bacterium


organism_name: Gallintestinimicrobium sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Streptococcus pneumoniae


organism_name: Clostridium sp.


organism_name: Hominenteromicrobium sp.


organism_name: Bifidobacterium longum


organism_name: Coprococcus sp.


organism_name: Lachnospiraceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Oscillospiraceae bacterium


organism_name: Christensenellales bacterium


organism_name: Ruminococcus sp.


organism_name: Faecalibacterium sp.


organism_name: Eubacteriales bacterium


organism_name: Roseburia faecis


organism_name: Catenibacterium sp.


organism_name: Blautia wexlerae


organism_name: Bacteroides eggerthii


organism_name: Faecalibacterium prausnitzii


organism_name: Flavonifractor plautii


organism_name: Streptococcus pneumoniae


organism_name: Blautia obeum


organism_name: Lachnospira pectinoschiza


organism_name: Sutterella wadsworthensis


organism_name: Agathobacter rectalis


organism_name: Blautia sp.


organism_name: Bacilli bacterium


organism_name: Bacteroides uniformis


organism_name: Romboutsia timonensis


organism_name: Phocaeicola coprocola


organism_name: Gemmiger sp.


organism_name: Streptococcus sp.


organism_name: Bifidobacterium bifidum


organism_name: Bifidobacterium adolescentis


organism_name: Alistipes putredinis


organism_name: Collinsella intestinalis


organism_name: Enterococcus faecalis


organism_name: Streptococcus pneumoniae


organism_name: Phascolarctobacterium faecium


organism_name: Phocaeicola vulgatus


organism_name: Fusobacterium sp.


organism_name: Dorea longicatena


organism_name: Acidaminococcus intestini


organism_name: Roseburia intestinalis


organism_name: Parabacteroides merdae


organism_name: Intestinibacter bartlettii


organism_name: Anaerobutyricum soehngenii


organism_name: Negativibacillus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Anaerostipes hadrus


organism_name: [Clostridium] leptum


organism_name: Desulfovibrio piger


organism_name: Subdoligranulum sp.


organism_name: Hominilimicola sp.


organism_name: Streptococcus pneumoniae


organism_name: Clostridium sp.


organism_name: Ruminococcus sp.


organism_name: Alistipes onderdonkii


organism_name: Lachnospiraceae bacterium


organism_name: Clostridium perfringens


organism_name: Collinsella aerofaciens


organism_name: Anaerovoracaceae bacterium


organism_name: Dorea formicigenerans


organism_name: Anaerobutyricum soehngenii


organism_name: Faecalibacillus intestinalis


organism_name: Blautia obeum


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Bifidobacterium adolescentis


organism_name: Blautia producta


organism_name: Anaerostipes hadrus


organism_name: Neglectibacter timonensis


organism_name: Streptococcus pneumoniae


organism_name: Bifidobacterium bifidum


organism_name: Eubacterium callanderi


organism_name: Acidaminococcus intestini


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; many frameshifted proteins

organism_name: [Clostridium] scindens


organism_name: Faecalibacterium prausnitzii


organism_name: Acutalibacteraceae bacterium


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Akkermansia sp.


organism_name: Paraclostridium sp.


organism_name: Allocoprococcus comes


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Coprococcus phoceensis


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Streptococcus parasanguinis


organism_name: Alistipes putredinis


organism_name: Blautia sp.


organism_name: Oscillospiraceae bacterium


organism_name: Evtepia sp.


organism_name: Streptococcus pneumoniae


organism_name: Eggerthella lenta


organism_name: Anaerovoracaceae bacterium


organism_name: Merdibacter sp.


organism_name: Dorea sp.


organism_name: Gemmiger formicilis


organism_name: Phocaeicola vulgatus


organism_name: Hungatella sp.


organism_name: Mediterraneibacter sp.


organism_name: Subdoligranulum sp.


organism_name: [Clostridium] innocuum


organism_name: Ruthenibacterium lactatiformans


organism_name: Lentihominibacter sp.


organism_name: [Ruminococcus] lactaris


organism_name: Ruthenibacterium sp.


organism_name: Phascolarctobacterium faecium


organism_name: Frisingicoccus sp.


organism_name: Streptococcus pneumoniae


organism_name: Dysgonomonas sp.


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroides ovatus


organism_name: Bacteroides cellulosilyticus


organism_name: Alistipes shahii


organism_name: Christensenellales bacterium


organism_name: Clostridium baratii


organism_name: Bacteroides thetaiotaomicron


organism_name: Flavonifractor plautii


organism_name: Bifidobacterium catenulatum


organism_name: Bacteroides fragilis


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Gordonibacter urolithinfaciens


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Merdibacter sp.


organism_name: Alistipes onderdonkii


organism_name: Agathobacter rectalis


organism_name: Blautia massiliensis (ex Durand et al. 2017)


organism_name: Akkermansia muciniphila


organism_name: Clostridia bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Blautia hydrogenotrophica


excluded_from_refseq: from large multi-isolate project

organism_name: Streptococcus pneumoniae


organism_name: Anaerovoracaceae bacterium


organism_name: Intestinibacter bartlettii


organism_name: Anaerotruncus massiliensis (ex Togo et al. 2026)


organism_name: Eisenbergiella massiliensis


organism_name: Bifidobacterium longum


organism_name: Ruminococcus sp.


organism_name: [Eubacterium] siraeum


organism_name: Peptococcus niger


organism_name: Hydrogeniiclostridium mannosilyticum


organism_name: Peptoniphilus pacaensis


organism_name: Peptoniphilus lacrimalis


organism_name: Emergencia timonensis


organism_name: Fenollaria massiliensis


organism_name: [Clostridium] scindens


organism_name: Turicibacter sanguinis


organism_name: Peptoniphilus senegalensis


organism_name: Clostridia bacterium


organism_name: Clostridium paraputrificum


organism_name: Streptococcus pneumoniae


organism_name: Varibaculum cambriense


organism_name: Finegoldia magna


organism_name: Lachnospiraceae bacterium


organism_name: Ezakiella coagulans


organism_name: Levyella massiliensis


organism_name: [Clostridium] symbiosum


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


infraspecific_name: strain=GPSC782; 120


organism_name: Campylobacter jejuni


asm_submitter: College of Veterinary medicine and Research Institute, Seoul National University

organism_name: Staphylococcus simulans


asm_submitter: Universite Laval

organism_name: Escherichia coli


asm_submitter: National Center for Genetic Engineering and Biotechnology

infraspecific_name: strain=TBRC 19032

organism_name: Flavobacterium mekongense


infraspecific_name: strain=TBRC 19031

refseq_category: reference genome

relation_to_type_material: assembly from type material


asm_submitter: South China Agricultural University

organism_name: Pseudomonas asiatica


asm_submitter: Akershus University Hospital, University of Oslo

assembly_level: Chromosome

excluded_from_refseq: annotation fails completeness check

organism_name: Staphylococcus aureus


organism_name: Pseudomonas sp. SC11


organism_name: Campylobacter coli


asm_submitter: National Center for Biotechnology Information


asm_submitter: Center for Food Safety and Applied Nutrition

organism_name: Salmonella enterica


asm_submitter: National Center For Social and Criminological Research

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Brucella melitensis


asm_submitter: Inner Mongolia Agricultural University

organism_name: Bacillus velezensis


asm_submitter: The Independent Schools Foundation Academy

organism_name: Pedobacter sp. KLB.chiD


asm_submitter: nanjing university

organism_name: Streptomyces collinus


asm_submitter: YONSEI UNIVERSITY COLLEGE OF MEDICINE

organism_name: Bacillus subtilis subsp. subtilis


asm_submitter: RURAL DEVELOPMENT ADMINISTRATION

organism_name: Lactiplantibacillus plantarum


asm_submitter: Henan Provincial Hospital of Traditional Chinese Medicine

organism_name: Klebsiella pneumoniae


organism_name: Levilactobacillus brevis


asm_submitter: Jiangnan University


asm_submitter: Langfang Normal University

organism_name: Gordonia sp. LUNF6


asm_submitter: Zhejiang University

organism_name: Rhizobium sp. WW22


asm_submitter: China Agriculture university

organism_name: Lactococcus lactis


asm_submitter: Drexel University College of Medicine

infraspecific_name: strain=PittBB

organism_name: Haemophilus influenzae


infraspecific_name: strain=PittAA


asm_submitter: Public Health England

organism_name: Campylobacter jejuni


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


asm_submitter: Centers for Disease Control and Prevention


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Campylobacter coli


asm_submitter: National Center for Biotechnology Information

organism_name: Streptococcus pneumoniae


asm_submitter: Public Health Agency of Canada

organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


asm_submitter: FDA Center for Food Safety and Applied Nutrition

organism_name: Listeria innocua


asm_submitter: CDC

organism_name: Vibrio vulnificus


organism_name: Serratia marcescens


organism_name: Pseudomonas aeruginosa


isolate: clinical isolate


infraspecific_name: strain=YJX

organism_name: Escherichia coli


asm_submitter: Chung-Ang university

organism_name: Staphylococcus xylosus


asm_submitter: Inha University

organism_name: Azonexus sp. IMCC34839


asm_submitter: Academy of Military Medical Sciences

organism_name: Klebsiella pneumoniae subsp. pneumoniae


asm_submitter: Creighton University


asm_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences

organism_name: Bacillus thuringiensis serovar fukuokaensis


asm_submitter: Mahidol University

organism_name: Streptomyces sediminimaris


organism_name: Bacillus thuringiensis serovar sumiyoshiensis


asm_submitter: Center for Food Safety and Applied Nutrition

organism_name: Salmonella enterica


organism_name: Campylobacter jejuni


organism_name: Acinetobacter baumannii


organism_name: Campylobacter coli


organism_name: Streptococcus pneumoniae


excluded_from_refseq: unverified source organism; from large multi-isolate project


organism_name: Listeria monocytogenes


organism_name: Vibrio cholerae O1


organism_name: Enterobacter hormaechei


organism_name: Klebsiella pneumoniae


isolate: isolate from patient 1


organism_name: Klebsiella aerogenes


isolate: isolate from patient 2


isolate: isolate from patient 4

organism_name: Pseudomonas aeruginosa


isolate: isolate from patient 6


isolate: isolate from patient 7


isolate: isolate from patient 8


isolate: isolate from patient 5


isolate: isolate from patient 3


organism_name: Enterobacter ludwigii


organism_name: Bacillus tropicus


organism_name: Listeria innocua


asm_submitter: USDA FSIS


asm_submitter: GDPU


excluded_from_refseq: fragmented assembly; from large multi-isolate project


asm_submitter: Shandong University at Weihai

organism_name: Halobacteriovorax sp. YZS-2-2


organism_name: Halobacteriovorax sp. YZS-3-2


organism_name: Halobacteriovorax sp. YZS-2-1


organism_name: Halobacteriovorax sp. YZS-3-1


organism_name: Halobacteriovorax sp. YZS-1-1


organism_name: Halobacteriovorax sp. YZS-1-2


organism_name: Halobacteriovorax sp. RT-2-6