organism_name: Ruthenibacterium lactatiformans


asm_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

assembly_level: Contig

assembly_type: haploid

excluded_from_refseq: derived from metagenome

genome_rep: Full

group: bacteria

organism_name: Candidatus Scatomorpha sp.

release_type: Major

version_status: latest


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Blautia sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Gemmiger formicilis

paired_asm_comp: identical


organism_name: Escherichia coli


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Eggerthella sp.


organism_name: Bifidobacterium adolescentis


organism_name: Adlercreutzia sp.


organism_name: Bifidobacterium longum


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Christensenellales bacterium


organism_name: Candidatus Scatomorpha merdipullorum


organism_name: Candidatus Alistipes avistercoris


organism_name: Alistipes onderdonkii


organism_name: Alistipes ihumii


organism_name: Evtepia gabavorous


organism_name: Enorma massiliensis


organism_name: Candidatus Merdiplasma sp.


organism_name: Candidatus Limiplasma merdipullorum


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Candidatus Egerieenecus merdigallinarum


organism_name: Candidatus Scatomorpha sp.


organism_name: Anaerotruncus massiliensis (ex Liu et al. 2021)


organism_name: Eggerthellaceae bacterium


organism_name: Alistipes putredinis


organism_name: Oxalobacter sp.


organism_name: Candidatus Faecivicinus avistercoris


organism_name: Ruthenibacterium lactatiformans


organism_name: Oscillospiraceae bacterium


organism_name: Gemmiger formicilis


organism_name: Collinsella sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Christensenellales bacterium


group: archaea

organism_name: Methanobrevibacter smithii


organism_name: Eubacterium maltosivorans


organism_name: Akkermansia muciniphila


organism_name: Candidatus Fimivicinus sp.


organism_name: Bifidobacterium bifidum


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Paratractidigestivibacter faecalis


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Agathobacter rectalis


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome


organism_name: Parolsenella sp.


organism_name: Blautia sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Blautia wexlerae


organism_name: Eubacteriales bacterium


organism_name: Peptococcaceae bacterium


organism_name: Desulfovibrio fairfieldensis


organism_name: Gemmiger formicilis


organism_name: Collinsella sp.


organism_name: Candidatus Limiplasma merdipullorum


organism_name: Eggerthellaceae bacterium


organism_name: Lactiplantibacillus plantarum


organism_name: Alistipes putredinis


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Fimenecus sp.


organism_name: Adlercreutzia equolifaciens


organism_name: Barnesiella intestinihominis


organism_name: Candidatus Woodwardiibium sp.


organism_name: Alistipes ihumii


organism_name: Waltera sp.


organism_name: Akkermansia muciniphila


organism_name: Candidatus Alistipes avistercoris


organism_name: Candidatus Acutalibacter ornithocaccae


organism_name: Hominenteromicrobium sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Eggerthella sp.


organism_name: Bacteroides intestinalis


organism_name: Candidatus Ventricola sp.


organism_name: Alistipes inops


organism_name: Senegalimassilia anaerobia


organism_name: Bifidobacterium longum


organism_name: Bifidobacterium adolescentis


organism_name: Ruminococcus sp.


organism_name: Gemmiger qucibialis


organism_name: Alphaproteobacteria bacterium


organism_name: Sutterella wadsworthensis


organism_name: Alistipes shahii


organism_name: Oscillospiraceae bacterium


organism_name: Akkermansia muciniphila


organism_name: Dysosmobacter sp.


organism_name: Candidatus Pelethocola sp.


organism_name: Alistipes dispar


organism_name: Alistipes onderdonkii


organism_name: Candidatus Acutalibacter ornithocaccae


organism_name: Bilophila wadsworthia


organism_name: Candidatus Scatomorpha merdavium


organism_name: Bacteroides xylanisolvens


organism_name: Christensenellales bacterium


organism_name: Rikenella microfusus


organism_name: Bacteroides uniformis


organism_name: Cloacibacillus evryensis


organism_name: Phocaeicola vulgatus


organism_name: Faecalibacterium prausnitzii


organism_name: Parabacteroides distasonis


organism_name: Pseudomonas sp.


organism_name: Gemmiger formicilis


organism_name: Dialister invisus


organism_name: Escherichia coli


organism_name: Eggerthella lenta


organism_name: Barnesiella intestinihominis


organism_name: Desulfovibrio fairfieldensis


organism_name: Clostridium porci


organism_name: Enterococcus faecium


organism_name: Collinsella sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Alistipes onderdonkii


organism_name: Acutalibacteraceae bacterium


organism_name: Gemmiger qucibialis


organism_name: Bacteroides uniformis


organism_name: Faecalibacterium prausnitzii


organism_name: Prevotella sp.


organism_name: Bilophila wadsworthia


organism_name: Limosilactobacillus mucosae


organism_name: Bacteroides caccae


organism_name: Flavonifractor plautii


organism_name: Parabacteroides distasonis


organism_name: [Clostridium] symbiosum


organism_name: Parasutterella excrementihominis


organism_name: Parabacteroides merdae


organism_name: Fusicatenibacter saccharivorans


organism_name: Mesosutterella multiformis


organism_name: Leyella stercorea


organism_name: Ruminococcus sp.


organism_name: Roseburia intestinalis


organism_name: Phocaeicola dorei


organism_name: Collinsella sp.


organism_name: Veillonella parvula


organism_name: Escherichia coli


organism_name: Roseburia faecis


organism_name: Phocaeicola vulgatus


organism_name: Alistipes finegoldii


organism_name: Alistipes inops


organism_name: Alistipes communis


organism_name: Acutalibacteraceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Faecousia sp.


organism_name: Eubacterium sp.


organism_name: Christensenellales bacterium


organism_name: Gemmiger qucibialis


organism_name: Barnesiella intestinihominis


organism_name: Bacteroides stercoris


organism_name: Candidatus Alistipes avistercoris


organism_name: Gemmiger formicilis


organism_name: Dysosmobacter sp.


organism_name: Phocaeicola dorei


organism_name: Alphaproteobacteria bacterium


organism_name: Alistipes shahii


organism_name: Haemophilus sp.


organism_name: Bacteroides sp.


organism_name: Phocaeicola vulgatus


organism_name: Parasutterella excrementihominis


organism_name: Oscillospiraceae bacterium


organism_name: Parabacteroides distasonis


organism_name: Pilosibacter sp.


organism_name: Alistipes putredinis


organism_name: Akkermansia sp.


organism_name: Bacteroides uniformis


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: [Eubacterium] siraeum


organism_name: Agathobacter rectalis


organism_name: Lawsonibacter sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Escherichia coli


organism_name: Alistipes ihumii


organism_name: Candidatus Alistipes avistercoris


organism_name: Sutterella wadsworthensis


organism_name: Bilophila wadsworthia


organism_name: Candidatus Merdousia sp.


organism_name: Anaerotruncus colihominis


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroides stercoris


organism_name: Dysosmobacter welbionis


organism_name: Candidatus Fimivicinus sp.


organism_name: Phocaeicola dorei


organism_name: Akkermansia muciniphila


organism_name: Alistipes putredinis


organism_name: Candidatus Fimenecus sp.


organism_name: Collinsella sp.


organism_name: Limosilactobacillus fermentum


organism_name: Dysosmobacter sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Akkermansia sp.


organism_name: Alistipes shahii


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Escherichia sp.


organism_name: Alistipes onderdonkii


organism_name: [Eubacterium] siraeum


organism_name: Bacteroides cellulosilyticus


organism_name: Lachnospiraceae bacterium


organism_name: Christensenellales bacterium


organism_name: Bacteroides thetaiotaomicron


organism_name: Escherichia coli


organism_name: Sutterella wadsworthensis


organism_name: Alistipes finegoldii


organism_name: Parabacteroides merdae


organism_name: Roseburia intestinalis


organism_name: Candidatus Limenecus avicola


organism_name: Akkermansia muciniphila


organism_name: Leyella stercorea


organism_name: Megasphaera micronuciformis


organism_name: Oscillospiraceae bacterium


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Acutalibacteraceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Duodenibacillus sp.


organism_name: Segatella sp.


organism_name: Alistipes putredinis


organism_name: Agathobacter rectalis


organism_name: Bacilli bacterium


organism_name: Candidatus Spyradocola sp.


organism_name: Christensenellales bacterium


organism_name: Parabacteroides distasonis


organism_name: Phocaeicola plebeius


organism_name: Klebsiella pneumoniae


organism_name: Faecalibacterium prausnitzii


organism_name: Barnesiella intestinihominis


organism_name: Phocaeicola vulgatus


organism_name: Alphaproteobacteria bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Gemmiger qucibialis


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: NJ DOH Public Health Laboratories microbial pathogen submission group

excluded_from_refseq: from large multi-isolate project

organism_name: Vibrio parahaemolyticus


organism_name: Roseburia hominis


organism_name: Parasutterella excrementihominis


organism_name: Gemmiger sp.


organism_name: Bacteroides eggerthii


organism_name: Eubacteriales bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Waltera sp.


organism_name: Parabacteroides distasonis


organism_name: Alistipes onderdonkii


organism_name: Roseburia faecis


organism_name: Bifidobacterium adolescentis


organism_name: Alistipes dispar


organism_name: Candidatus Fimenecus sp.


organism_name: Phocaeicola sp.


organism_name: Mediterraneibacter gnavus


organism_name: Oscillospiraceae bacterium


asm_submitter: National Center for Biotechnology Information

organism_name: Vibrio cholerae


asm_submitter: CDC

organism_name: Shigella sonnei


organism_name: Shigella flexneri


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: Second Affiliated Hospial of Zhejiang University, School of Medicine

organism_name: Pseudomonas aeruginosa


asm_name: HBXY-SL

asm_submitter: China CDC

assembly_level: Complete Genome

infraspecific_name: strain=HBXY-SL

organism_name: Streptococcus suis


asm_submitter: Nakdonggang National Institute of Biological Resources (NNIBR)

organism_name: Niveibacterium terrae

refseq_category: reference genome

relation_to_type_material: assembly from type material


asm_submitter: University Hospital Muenster

assembly_level: Chromosome

organism_name: Klebsiella pneumoniae


organism_name: Acinetobacter baumannii


organism_name: Escherichia coli


organism_name: Candidatus Limivicinus sp.


organism_name: Segatella copri


organism_name: Paramuribaculum sp.


organism_name: Citrobacter freundii


organism_name: Phocaeicola coprocola


organism_name: [Eubacterium] siraeum


organism_name: Klebsiella aerogenes


organism_name: Candidatus Fimenecus sp.


organism_name: Christensenellales bacterium


organism_name: Bacteroidales bacterium


organism_name: Enterobacter hormaechei


organism_name: Dysosmobacter sp.


organism_name: Lachnospiraceae bacterium


organism_name: Alistipes putredinis


organism_name: Klebsiella pneumoniae


organism_name: Citrobacter gillenii


organism_name: Escherichia coli


organism_name: Leyella stercorea


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Sutterella wadsworthensis


organism_name: Phocaeicola vulgatus


organism_name: Citrobacter freundii


organism_name: Oscillospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Roseburia inulinivorans


organism_name: Phocaeicola dorei


organism_name: Waltera sp.


organism_name: Morganella morganii


organism_name: Bacteroides sp.


organism_name: Parabacteroides distasonis


organism_name: Klebsiella oxytoca


organism_name: Klebsiella pneumoniae


organism_name: Bacteroides intestinalis


organism_name: Pseudomonas aeruginosa


organism_name: Acinetobacter baumannii


organism_name: Butyrivibrio sp.


organism_name: Akkermansia sp.


organism_name: Faecousia sp.


organism_name: Escherichia coli


organism_name: Bifidobacterium bifidum


organism_name: Tidjanibacter sp.


organism_name: Gemmiger sp.


organism_name: Alistipes inops


organism_name: Citrobacter freundii


organism_name: Klebsiella aerogenes


organism_name: Oscillospiraceae bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Ruminococcus sp.


organism_name: Candidatus Pelethousia gallinarum


organism_name: Candidatus Onthocola stercorigallinarum


organism_name: Phocaeicola vulgatus


organism_name: Acinetobacter baumannii


organism_name: Klebsiella pneumoniae


organism_name: Candidatus Egerieisoma sp.


organism_name: Citrobacter koseri


organism_name: Pseudomonas aeruginosa


organism_name: [Eubacterium] siraeum


organism_name: Candidatus Merdicola sp.


organism_name: Bacteroides uniformis


organism_name: Gemmiger qucibialis


organism_name: Enterobacter hormaechei


excluded_from_refseq: contaminated; from large multi-isolate project

organism_name: Escherichia coli


organism_name: Faecalibacterium sp.


organism_name: Alistipes finegoldii


organism_name: Bacteroides thetaiotaomicron


organism_name: Citrobacter freundii


organism_name: Parasutterella excrementihominis


organism_name: Eubacteriales bacterium


organism_name: Alistipes putredinis


organism_name: Acinetobacter baumannii


organism_name: Alistipes onderdonkii


organism_name: Akkermansia sp.


organism_name: Prevotella sp.


organism_name: Roseburia hominis


organism_name: Klebsiella pneumoniae


organism_name: Candidatus Lachnoclostridium avicola


organism_name: Desulfovibrio porci


organism_name: Candidatus Fimivicinus sp.


organism_name: Bifidobacterium longum


organism_name: Escherichia coli


organism_name: Alistipes dispar


organism_name: Candidatus Flavonifractor avistercoris


organism_name: Thermophilibacter provencensis


organism_name: Citrobacter freundii


excluded_from_refseq: derived from metagenome; genome length too small; genus undefined

organism_name: [Eubacterium] siraeum


organism_name: Ruminococcus sp.


organism_name: Alistipes putredinis


organism_name: Candidatus Fimenecus sp.


organism_name: Gemmiger formicilis


organism_name: Pseudomonas aeruginosa


organism_name: Acinetobacter baumannii


organism_name: Oscillospiraceae bacterium


organism_name: Akkermansia muciniphila


organism_name: Klebsiella pneumoniae


organism_name: Christensenellales bacterium


organism_name: Phocaeicola sp.


organism_name: Bacteroides ovatus


organism_name: Phocaeicola vulgatus


organism_name: Escherichia coli


organism_name: Parasutterella excrementihominis


organism_name: Roseburia faecis


organism_name: [Lactobacillus] rogosae


organism_name: Klebsiella variicola


organism_name: Alistipes putredinis


organism_name: Bacteroides uniformis


organism_name: Alistipes onderdonkii


organism_name: Candidatus Spyradomonas excrementavium


organism_name: Bacteroides sp.


organism_name: Escherichia sp.


organism_name: Akkermansia muciniphila


organism_name: Waltera sp.


organism_name: Enterobacter hormaechei


organism_name: Citrobacter amalonaticus


organism_name: Klebsiella pneumoniae


organism_name: Ruminococcus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Escherichia coli


organism_name: Citrobacter freundii


organism_name: Pseudomonas aeruginosa


organism_name: Alistipes finegoldii


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Sutterella wadsworthensis


organism_name: Parabacteroides distasonis


organism_name: Alistipes putredinis


organism_name: Prevotella sp.


organism_name: Bacteroides eggerthii


organism_name: Segatella copri


organism_name: Succinivibrio sp.


asm_submitter: South Carolina Dept. of Health & Environmental Control


organism_name: Candidatus Fimenecus sp.


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Leyella stercorea


organism_name: Phocaeicola vulgatus


organism_name: Alloprevotella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Enterobacter hormaechei


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Salmonella enterica subsp. enterica serovar Infantis


asm_submitter: Center for Food Safety and Applied Nutrition

organism_name: Salmonella enterica


organism_name: Oscillospiraceae bacterium


organism_name: Salmonella enterica subsp. enterica serovar Derby


asm_submitter: USDA FSIS

organism_name: Campylobacter jejuni


organism_name: Christensenellales bacterium


asm_submitter: Vet-LIRN-CVM-FDA

organism_name: Escherichia coli


organism_name: Akkermansia sp.


organism_name: Phascolarctobacterium faecium


organism_name: Campylobacter coli


organism_name: [Eubacterium] siraeum


organism_name: Parasutterella excrementihominis


organism_name: Alistipes putredinis


organism_name: Alistipes onderdonkii


organism_name: Barnesiella intestinihominis


organism_name: Campylobacter lari


organism_name: Parabacteroides merdae


organism_name: Enterocloster sp.


organism_name: Bacteroides cellulosilyticus


organism_name: Parabacteroides distasonis


organism_name: Escherichia sp.


organism_name: Campylobacter jejuni


organism_name: Bacteroides fragilis


organism_name: Escherichia coli


organism_name: Klebsiella aerogenes


organism_name: Parasutterella sp.


organism_name: Klebsiella pneumoniae


organism_name: Citrobacter freundii


organism_name: Acidaminococcus intestini


organism_name: Megasphaera sp.


organism_name: Phocaeicola vulgatus


excluded_from_refseq: unverified source organism; from large multi-isolate project

organism_name: Citrobacter braakii


organism_name: [Eubacterium] siraeum


organism_name: Alistipes putredinis


organism_name: Phocaeicola sp.


organism_name: Odoribacter laneus


organism_name: Lachnospiraceae bacterium


organism_name: Citrobacter farmeri


organism_name: Faecalibacterium sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Bacteroides uniformis


organism_name: Alistipes finegoldii


organism_name: Akkermansia muciniphila


organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


organism_name: Candidatus Merdicola sp.


organism_name: Klebsiella ornithinolytica


organism_name: Klebsiella variicola


organism_name: Bacteroides caccae


organism_name: Citrobacter freundii


organism_name: Anaerotignum sp.


organism_name: Bacteroides thetaiotaomicron


organism_name: Phascolarctobacterium faecium


organism_name: Mediterraneibacter gnavus


organism_name: Ruminococcus sp.


organism_name: Clostridium sp.


organism_name: Blautia wexlerae


organism_name: Oscillospiraceae bacterium


organism_name: Faecousia sp.


organism_name: Candidatus Fimivicinus sp.


organism_name: Salmonella enterica


organism_name: Escherichia coli


organism_name: Shigella flexneri


organism_name: Negativibacillus sp.


organism_name: Hominenteromicrobium sp.


organism_name: Faecalibacterium sp.


organism_name: Akkermansia sp.


organism_name: Lachnospira sp.


organism_name: Shigella sonnei


organism_name: Barnesiella sp.


organism_name: Cronobacter malonaticus


organism_name: Enterobacter sp.


organism_name: Anaerostipes hadrus


organism_name: Faecalibacterium prausnitzii


organism_name: Eisenbergiella porci


organism_name: Phascolarctobacterium faecium


organism_name: Blautia wexlerae


organism_name: Candidatus Scatocola faecipullorum


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Roseburia faecis


organism_name: Salmonella enterica subsp. enterica serovar Berta


organism_name: Barnesiella intestinihominis


organism_name: Bacteroides uniformis


organism_name: Parabacteroides distasonis


organism_name: Parasutterella excrementihominis


organism_name: Alistipes putredinis


organism_name: Salmonella enterica subsp. enterica serovar Kiambu


organism_name: Christensenellales bacterium


organism_name: Aeromonas salmonicida subsp. salmonicida


asm_submitter: University of Exeter


organism_name: Aeromonas salmonicida subsp. pectinolytica


organism_name: Oscillospiraceae bacterium


organism_name: Gemmiger formicilis


organism_name: Muribaculaceae bacterium


assembly_level: Scaffold


organism_name: Campylobacter coli


organism_name: Campylobacter jejuni


excluded_from_refseq: annotation fails completeness check

organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Alachua


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: FDA Center for Food Safety and Applied Nutrition


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Pseudomonas aeruginosa


organism_name: Shigella flexneri


asm_submitter: Centers for Disease Control and Prevention

organism_name: Yersinia enterocolitica


organism_name: Salmonella enterica subsp. enterica serovar Worthington


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Streptococcus pyogenes


organism_name: Neisseria gonorrhoeae


organism_name: Legionella pneumophila


organism_name: Streptococcus pneumoniae


asm_submitter: Health Protection Agency

organism_name: Shigella sonnei


organism_name: Escherichia coli


organism_name: Campylobacter coli


organism_name: Campylobacter jejuni


organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Campylobacter upsaliensis


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Vibrio harveyi


asm_submitter: Public Health England

organism_name: Salmonella enterica subsp. enterica serovar Bareilly


asm_submitter: CDC


organism_name: Klebsiella pneumoniae


asm_submitter: PulseNet Next Generation Subtyping Methods Unit

organism_name: Cronobacter sakazakii


asm_submitter: FDA


organism_name: Enterobacter hormaechei


organism_name: Staphylococcus aureus


asm_submitter: National Center for Biotechnology Information


organism_name: Pseudomonas aeruginosa


organism_name: Klebsiella aerogenes


organism_name: Acinetobacter baumannii


asm_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

organism_name: Bifidobacterium longum


organism_name: Morganella morganii


organism_name: Hominenteromicrobium sp.


organism_name: Bifidobacterium animalis


organism_name: Coriobacteriales bacterium


organism_name: Christensenellales bacterium


organism_name: Citrobacter freundii


organism_name: Candidatus Fimadaptatus sp.


organism_name: Escherichia coli


organism_name: Enorma massiliensis


organism_name: Collinsella aerofaciens


organism_name: Bifidobacterium bifidum


organism_name: Eggerthellaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Klebsiella pneumoniae


organism_name: Evtepia gabavorous


organism_name: Pseudomonas aeruginosa


organism_name: Gemmiger qucibialis


organism_name: Ruminococcus sp.


organism_name: Bifidobacterium adolescentis


organism_name: Candidatus Acutalibacter ornithocaccae


organism_name: Candidatus Limiplasma sp.


organism_name: Adlercreutzia sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Christensenellales bacterium


organism_name: Alistipes putredinis


organism_name: Faecalicoccus pleomorphus


organism_name: Candidatus Ventricola sp.


organism_name: Eubacteriales bacterium


organism_name: Candidatus Faecivicinus sp.


organism_name: Candidatus Limiplasma merdipullorum


organism_name: Klebsiella pneumoniae


organism_name: Akkermansia muciniphila


organism_name: Eggerthellaceae bacterium


organism_name: Gordonibacter pamelaeae


organism_name: Evtepia gabavorous


organism_name: Agathobaculum sp.


organism_name: Acinetobacter baumannii


organism_name: Oscillospiraceae bacterium


organism_name: Slackia isoflavoniconvertens


organism_name: Streptococcus salivarius


organism_name: Bifidobacterium longum


organism_name: Anaerovoracaceae bacterium


organism_name: Gemmiger formicilis


organism_name: Gemmiger qucibialis


organism_name: Pseudomonas aeruginosa


organism_name: Candidatus Aphodovivens avicola


organism_name: Klebsiella aerogenes


organism_name: Citrobacter amalonaticus


organism_name: Hominenteromicrobium sp.


organism_name: Eggerthellaceae bacterium


organism_name: Klebsiella pneumoniae


organism_name: Adlercreutzia sp.


organism_name: Klebsiella variicola


organism_name: Senegalimassilia anaerobia


organism_name: Acinetobacter baumannii


organism_name: Slackia isoflavoniconvertens


organism_name: Ruminococcus sp.


organism_name: Escherichia coli


organism_name: Christensenellales bacterium


organism_name: Candidatus Ventricola sp.


organism_name: Streptococcus thermophilus


organism_name: Candidatus Limiplasma merdipullorum


organism_name: Senegalimassilia faecalis


organism_name: Blautia wexlerae


organism_name: Collinsella sp.


organism_name: Collinsella aerofaciens


organism_name: Citrobacter freundii


organism_name: Gemmiger sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Klebsiella pneumoniae


organism_name: Holdemanella porci


organism_name: Coriobacteriales bacterium


organism_name: Anaerovoracaceae bacterium


organism_name: Eggerthella lenta


organism_name: Escherichia coli


organism_name: Citrobacter braakii


organism_name: Pseudomonas aeruginosa


organism_name: Evtepia gabavorous


organism_name: Oscillospiraceae bacterium


organism_name: Hominenteromicrobium sp.


organism_name: Agathobacter rectalis


organism_name: Fusicatenibacter saccharivorans


organism_name: Klebsiella variicola


organism_name: Bifidobacterium longum


organism_name: Slackia isoflavoniconvertens


organism_name: Ellagibacter sp.


organism_name: Klebsiella pneumoniae


organism_name: Gemmiger qucibialis


organism_name: [Eubacterium] siraeum


organism_name: Klebsiella aerogenes


organism_name: Adlercreutzia sp.


organism_name: Escherichia coli


organism_name: Gordonibacter urolithinfaciens


organism_name: Blautia producta


organism_name: Blautia hydrogenotrophica


organism_name: Akkermansia sp.


organism_name: Acutalibacter sp.


organism_name: Pseudomonas aeruginosa


organism_name: Ruthenibacterium lactatiformans


organism_name: Citrobacter freundii


organism_name: [Clostridium] innocuum


organism_name: Acutalibacteraceae bacterium


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Eggerthellaceae bacterium


organism_name: Eggerthella lenta


organism_name: Klebsiella pneumoniae


organism_name: Ruminococcus sp.


organism_name: Bifidobacterium longum


organism_name: Adlercreutzia equolifaciens


organism_name: Collinsella aerofaciens


organism_name: Lactiplantibacillus plantarum


organism_name: Escherichia coli


organism_name: Collinsella sp.


organism_name: Weissella viridescens


organism_name: Candidatus Ventricola sp.


organism_name: Eubacteriales bacterium


organism_name: Acinetobacter baumannii


organism_name: Gemmiger sp.


organism_name: Agathobacter rectalis


organism_name: Oscillospiraceae bacterium


organism_name: Pseudomonas aeruginosa


organism_name: Slackia isoflavoniconvertens


organism_name: Succinivibrio sp.


organism_name: Parolsenella catena


organism_name: Segatella copri


organism_name: Bifidobacterium dentium


organism_name: Gemmiger qucibialis


organism_name: Ruminococcus sp.


organism_name: Mitsuokella jalaludinii


organism_name: Faecousia sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Waltera sp.


organism_name: Roseburia intestinalis


organism_name: Limosilactobacillus reuteri


organism_name: Oribacterium sp.


organism_name: Oscillospiraceae bacterium


organism_name: Pseudomonas aeruginosa


organism_name: Coprococcus sp.


organism_name: Hominenteromicrobium sp.


organism_name: Prevotellamassilia timonensis


organism_name: Klebsiella pneumoniae


organism_name: Citrobacter koseri


organism_name: Alistipes putredinis


organism_name: Ruminococcus sp.


organism_name: Klebsiella oxytoca


organism_name: Acinetobacter baumannii


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Ruminococcus callidus


excluded_from_refseq: derived from metagenome

organism_name: Candidatus Fimenecus sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Bifidobacterium adolescentis


organism_name: Escherichia coli


organism_name: Fusicatenibacter saccharivorans


organism_name: Bifidobacterium longum


organism_name: Lachnospiraceae bacterium


organism_name: Collinsella aerofaciens


organism_name: Eggerthellaceae bacterium


organism_name: Klebsiella aerogenes


organism_name: Citrobacter braakii


organism_name: Agathobacter rectalis


organism_name: Morganella morganii


organism_name: Klebsiella pneumoniae


organism_name: Eubacterium sp.


organism_name: Ruminococcus sp.


organism_name: Pseudomonas putida


organism_name: Pseudomonas aeruginosa


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Faecalibacterium sp.


organism_name: Citrobacter farmeri


organism_name: Bifidobacterium bifidum


organism_name: Candidatus Ventricola sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small; genus undefined

organism_name: [Eubacterium] siraeum


organism_name: Ruminococcus callidus


organism_name: Citrobacter freundii


organism_name: Alistipes putredinis


organism_name: Escherichia coli


organism_name: Bifidobacterium longum


organism_name: Adlercreutzia sp.


organism_name: Gemmiger qucibialis


organism_name: Klebsiella pneumoniae


organism_name: Lachnospiraceae bacterium


organism_name: Collinsella aerofaciens


organism_name: Blautia sp.


organism_name: Candidatus Collinsella stercoripullorum


organism_name: Akkermansia muciniphila


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Acinetobacter radioresistens


organism_name: Pseudomonas aeruginosa


organism_name: Ruthenibacterium sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Eggerthellaceae bacterium


organism_name: Comamonas sp.


organism_name: Gemmiger sp.


organism_name: Bifidobacterium adolescentis


organism_name: Escherichia coli


organism_name: Oscillospiraceae bacterium


organism_name: Bifidobacterium longum


organism_name: Candidatus Egerieenecus merdigallinarum


organism_name: Klebsiella pneumoniae


organism_name: Proteus mirabilis


organism_name: Alistipes shahii


organism_name: Christensenellales bacterium


organism_name: Hominenteromicrobium sp.


organism_name: Alistipes putredinis


organism_name: Citrobacter freundii


organism_name: Candidatus Fimenecus sp.


organism_name: Eubacteriales bacterium


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Ruminococcus sp.


organism_name: Klebsiella aerogenes


organism_name: Adlercreutzia equolifaciens subsp. celatus


organism_name: Pseudomonas aeruginosa


organism_name: Ellagibacter isourolithinifaciens


organism_name: Lachnospiraceae bacterium


organism_name: Escherichia coli


organism_name: Bifidobacterium catenulatum


organism_name: Providencia stuartii


organism_name: Coprococcus sp.


organism_name: Klebsiella pneumoniae


organism_name: Bifidobacterium adolescentis


organism_name: Adlercreutzia sp.


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Hominenteromicrobium sp.


organism_name: Gemmiger formicilis


organism_name: Eggerthellaceae bacterium


organism_name: Citrobacter freundii


organism_name: Agathobacter rectalis


organism_name: Eubacteriales bacterium


organism_name: Bifidobacterium longum


organism_name: Collinsella aerofaciens


organism_name: Bacteroides uniformis


organism_name: Pseudomonas aeruginosa


organism_name: Gemmiger sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Barnesiella intestinihominis


organism_name: Akkermansia muciniphila


organism_name: Adlercreutzia equolifaciens subsp. celatus


organism_name: Lactiplantibacillus plantarum


organism_name: Klebsiella pneumoniae


organism_name: Ruminococcus sp.


organism_name: Gemmiger qucibialis


organism_name: Bifidobacterium dentium


organism_name: Klebsiella aerogenes


organism_name: Alistipes putredinis


organism_name: Escherichia coli


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Agathobaculum sp.


organism_name: Blautia wexlerae


organism_name: Adlercreutzia sp.


organism_name: Agathobacter rectalis


organism_name: Peptococcaceae bacterium


organism_name: Senegalimassilia sp.


organism_name: Bifidobacterium animalis


organism_name: Pseudomonas aeruginosa


organism_name: Fusicatenibacter saccharivorans


organism_name: Acinetobacter baumannii


organism_name: Candidatus Aphodovivens avicola


organism_name: Klebsiella pneumoniae


organism_name: Eubacteriales bacterium


organism_name: Coriobacteriales bacterium


organism_name: Collinsella bouchesdurhonensis


organism_name: Candidatus Ventricola sp.


organism_name: Proteus mirabilis


organism_name: Coprococcus sp.


organism_name: Citrobacter freundii


organism_name: Christensenellales bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Collinsella sp.


organism_name: Citrobacter amalonaticus


organism_name: Escherichia coli


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Agathobaculum butyriciproducens


organism_name: Gordonibacter urolithinfaciens


organism_name: Gemmiger formicilis


organism_name: Ruminococcus callidus


organism_name: Klebsiella pneumoniae


organism_name: Acinetobacter baumannii


organism_name: Gemmiger qucibialis


organism_name: Acutalibacteraceae bacterium


organism_name: Hominenteromicrobium sp.


organism_name: Candidatus Choladousia sp.


organism_name: Oscillospiraceae bacterium


organism_name: Pseudomonas aeruginosa


organism_name: Collinsella aerofaciens


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined


organism_name: Evtepia sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Coriobacteriales bacterium


excluded_from_refseq: from large multi-isolate project

organism_name: Morganella morganii


organism_name: Alistipes putredinis


organism_name: Coprococcus sp.


organism_name: Enterobacter asburiae


organism_name: Dialister invisus


organism_name: Eggerthellaceae bacterium


organism_name: Senegalimassilia anaerobia


organism_name: Escherichia coli


organism_name: Blautia wexlerae


organism_name: Bifidobacterium longum


organism_name: Klebsiella pneumoniae


organism_name: Agathobacter rectalis


organism_name: Blautia sp.


organism_name: Agathobaculum butyriciproducens


organism_name: Gemmiger qucibialis


organism_name: Clostridia bacterium


organism_name: Candidatus Limiplasma sp.


organism_name: Citrobacter freundii


organism_name: Hominenteromicrobium sp.


organism_name: [Clostridium] scindens


organism_name: Candidatus Ventrisoma faecale


organism_name: Enterobacter asburiae


organism_name: Ruminococcus sp.


organism_name: Barnesiella intestinihominis


organism_name: Candidatus Aphodovivens avicola


organism_name: Evtepia gabavorous


organism_name: Acinetobacter baumannii


organism_name: Oscillospiraceae bacterium


organism_name: Klebsiella pneumoniae


organism_name: Pseudomonas aeruginosa


organism_name: Lachnospiraceae bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Mediterraneibacter gnavus


organism_name: Ruthenibacterium sp.


organism_name: Sellimonas intestinalis


organism_name: Gemmiger qucibialis


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Coprococcus sp.


organism_name: Ruminococcus sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Escherichia coli


organism_name: Christensenellales bacterium


organism_name: Acinetobacter baumannii


organism_name: Enterobacter hormaechei


organism_name: Slackia sp.


organism_name: Adlercreutzia sp.


organism_name: Candidatus Limiplasma sp.


organism_name: Eggerthellaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Faecousia sp.


organism_name: Candidatus Acutalibacter ornithocaccae


organism_name: Dorea sp.


organism_name: Citrobacter freundii


organism_name: Collinsella sp.


organism_name: Klebsiella pneumoniae


organism_name: Klebsiella aerogenes


organism_name: Candidatus Faecivicinus sp.


organism_name: Eggerthella lenta


organism_name: Enterococcus faecium


organism_name: Gordonibacter urolithinfaciens


organism_name: Ruthenibacterium lactatiformans


organism_name: Pseudomonas aeruginosa


organism_name: Acinetobacter baumannii


organism_name: Escherichia coli


organism_name: Hominenteromicrobium sp.


organism_name: Alistipes putredinis


organism_name: Candidatus Fimenecus sp.


organism_name: Eubacteriales bacterium


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Klebsiella variicola


organism_name: Citrobacter freundii


organism_name: Mediterraneibacter torques


organism_name: Dorea sp.


organism_name: Morganella morganii


organism_name: Candidatus Choladousia sp.


organism_name: Klebsiella pneumoniae


organism_name: Akkermansia muciniphila


organism_name: Ellagibacter isourolithinifaciens


organism_name: Bifidobacterium bifidum


organism_name: Oscillospiraceae bacterium


organism_name: Pseudomonas aeruginosa


organism_name: Bifidobacterium longum


organism_name: Gemmiger qucibialis


organism_name: Ruminococcus sp.


organism_name: Candidatus Ventricola sp.


organism_name: Christensenellales bacterium


organism_name: Slackia isoflavoniconvertens


organism_name: Erysipelotrichaceae bacterium


organism_name: Citrobacter freundii


organism_name: Acutalibacteraceae bacterium


organism_name: Klebsiella ornithinolytica


organism_name: Mediterraneibacter gnavus


organism_name: Klebsiella pneumoniae


organism_name: Propionibacterium freudenreichii


organism_name: Enterococcus faecium


organism_name: Acinetobacter baumannii


organism_name: Candidatus Limiplasma sp.


organism_name: Blautia sp.


organism_name: Lacticaseibacillus rhamnosus


organism_name: Gemmiger formicilis


organism_name: Candidatus Faecivicinus sp.


organism_name: Lacticaseibacillus paracasei


organism_name: Bifidobacterium longum


organism_name: Candidatus Ventricola sp.


organism_name: Collinsella bouchesdurhonensis


organism_name: Enterococcus sp.


organism_name: Paratractidigestivibacter faecalis


organism_name: Escherichia coli


organism_name: Eubacteriales bacterium


organism_name: Hominenteromicrobium sp.


organism_name: Klebsiella pneumoniae


organism_name: Parolsenella catena


organism_name: Senegalimassilia sp.


organism_name: Bifidobacterium adolescentis


organism_name: Ellagibacter isourolithinifaciens


organism_name: Akkermansia sp.


organism_name: Slackia isoflavoniconvertens


organism_name: Pseudomonas aeruginosa


organism_name: Adlercreutzia equolifaciens subsp. celatus


organism_name: Akkermansia muciniphila


organism_name: Senegalimassilia anaerobia


organism_name: Candidatus Evtepia excrementipullorum


organism_name: Acutalibacteraceae bacterium


organism_name: Bifidobacterium bifidum


organism_name: Peptococcaceae bacterium


organism_name: Fusicatenibacter saccharivorans


organism_name: Citrobacter freundii


organism_name: Escherichia coli


organism_name: Enorma sp.


organism_name: Klebsiella pneumoniae


organism_name: Oscillospiraceae bacterium


organism_name: Ellagibacter isourolithinifaciens


organism_name: Eggerthellaceae bacterium


organism_name: Gemmiger qucibialis


organism_name: Candidatus Acutalibacter stercoravium


organism_name: Bifidobacterium adolescentis


organism_name: Candidatus Ventricola sp.


organism_name: Bifidobacterium longum


organism_name: Ruminococcus bromii


organism_name: Dorea longicatena


organism_name: Candidatus Coprovicinus avistercoris


organism_name: Christensenellales bacterium


organism_name: Faecalicoccus pleomorphus


organism_name: Bacteroides eggerthii


organism_name: Escherichia coli


organism_name: Gordonibacter pamelaeae


organism_name: Candidatus Scatavimonas sp.


organism_name: Acinetobacter baumannii


organism_name: Lachnospiraceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Gemmiger formicilis


organism_name: Pseudomonas aeruginosa


organism_name: Klebsiella pneumoniae


organism_name: Blautia hydrogenotrophica


organism_name: Allocoprococcus comes


organism_name: Ruminococcus callidus


organism_name: Bacteroides salyersiae


organism_name: Eggerthellaceae bacterium


organism_name: Bifidobacterium adolescentis


organism_name: Pseudomonas putida


organism_name: Citrobacter freundii


organism_name: Holdemanella porci


organism_name: Lentilactobacillus sp.


organism_name: Streptococcus thermophilus


organism_name: Escherichia coli


organism_name: Hominenteromicrobium sp.


organism_name: Senegalimassilia anaerobia


organism_name: Clostridia bacterium


organism_name: Pseudomonas aeruginosa


organism_name: Candidatus Limiplasma sp.


organism_name: Collinsella sp.


organism_name: Desulfovibrio fairfieldensis


organism_name: Weissella confusa


organism_name: Klebsiella pneumoniae


organism_name: Candidatus Alistipes avistercoris


organism_name: Alistipes putredinis


organism_name: Candidatus Faecivicinus sp.


organism_name: Gemmiger qucibialis


organism_name: Christensenellales bacterium


organism_name: Adlercreutzia equolifaciens


organism_name: Acinetobacter baumannii


organism_name: Eggerthellaceae bacterium


organism_name: Citrobacter freundii


organism_name: Escherichia coli


organism_name: Oscillospiraceae bacterium


organism_name: Klebsiella aerogenes


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Bifidobacterium longum


organism_name: Fusicatenibacter saccharivorans


organism_name: Gordonibacter pamelaeae


organism_name: Agathobaculum sp.


organism_name: Klebsiella pneumoniae


organism_name: Alistipes shahii


organism_name: Candidatus Egerieenecus sp.


organism_name: Eggerthella lenta


organism_name: Pseudomonas aeruginosa


organism_name: Blautia sp.


organism_name: Agathobacter rectalis


organism_name: Collinsella sp.


organism_name: Enterococcus faecium


organism_name: Gemmiger qucibialis


organism_name: Akkermansia muciniphila


organism_name: Escherichia coli


organism_name: Pseudomonadati bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Citrobacter freundii


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes onderdonkii


organism_name: Gemmiger formicilis


organism_name: Eubacteriales bacterium


organism_name: Ruminococcus sp.


organism_name: Senegalimassilia sp.


organism_name: Slackia isoflavoniconvertens


organism_name: Candidatus Evtepia excrementipullorum


organism_name: Coriobacteriales bacterium


organism_name: Agathobaculum sp.


organism_name: Senegalimassilia anaerobia


organism_name: Peptococcaceae bacterium


organism_name: Ellagibacter isourolithinifaciens


organism_name: Adlercreutzia sp.


organism_name: Alistipes putredinis


organism_name: Hominenteromicrobium sp.


organism_name: Escherichia coli


organism_name: Christensenellales bacterium


organism_name: Klebsiella pneumoniae


organism_name: Acinetobacter baumannii


organism_name: Catenibacterium sp.


organism_name: Gemmiger qucibialis


organism_name: Muribaculaceae bacterium


organism_name: Collinsella sp.


organism_name: Candidatus Alistipes avistercoris


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Ruminococcus sp.


organism_name: Paratractidigestivibacter sp.


organism_name: Eggerthellaceae bacterium


organism_name: Bifidobacterium bifidum


organism_name: Barnesiella intestinihominis


organism_name: Bifidobacterium animalis


organism_name: Bifidobacterium adolescentis


organism_name: Adlercreutzia sp.


organism_name: Lactiplantibacillus plantarum


organism_name: Blautia faecis


organism_name: Clostridia bacterium


organism_name: Alistipes putredinis


organism_name: Escherichia coli


organism_name: Pseudomonas aeruginosa


organism_name: Klebsiella pneumoniae


organism_name: Collinsella sp.


organism_name: Faecalibacterium sp.


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes inops


organism_name: Agathobacter rectalis


organism_name: Blautia wexlerae


organism_name: Proteus mirabilis


organism_name: Klebsiella variicola


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Akkermansia muciniphila


organism_name: Bifidobacterium pullorum


organism_name: Alistipes finegoldii


organism_name: Gemmiger formicilis


organism_name: Gemmiger qucibialis


organism_name: Escherichia coli


organism_name: Citrobacter freundii


organism_name: Candidatus Fimivicinus sp.


organism_name: Pseudomonas aeruginosa


organism_name: Collinsella sp.


organism_name: Bifidobacterium longum


organism_name: Slackia isoflavoniconvertens


organism_name: Ruthenibacterium lactatiformans


organism_name: Providencia stuartii


organism_name: Candidatus Limiplasma merdipullorum


organism_name: Acinetobacter baumannii


organism_name: Acutalibacteraceae bacterium


organism_name: Collinsella bouchesdurhonensis


organism_name: Agathobacter rectalis


organism_name: Oscillospiraceae bacterium


organism_name: Christensenellales bacterium


organism_name: Gemmiger qucibialis


organism_name: Escherichia coli


organism_name: Alistipes putredinis


organism_name: Candidatus Ventricola sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Mediterraneibacter torques


organism_name: Prevotella sp.


organism_name: Senegalimassilia anaerobia


organism_name: Barnesiella intestinihominis


organism_name: Anaerostipes hadrus


organism_name: Ruminococcus sp.


organism_name: Klebsiella pneumoniae


organism_name: Agathobaculum sp.


organism_name: Akkermansia muciniphila


organism_name: Bifidobacterium adolescentis


organism_name: Faecousia sp.


organism_name: Paratractidigestivibacter faecalis


organism_name: Escherichia marmotae


organism_name: Candidatus Faecivicinus sp.


organism_name: Citrobacter amalonaticus


organism_name: Pauljensenia sp.


organism_name: Eggerthella lenta


organism_name: Klebsiella oxytoca


organism_name: Candidatus Limiplasma merdipullorum


organism_name: Escherichia coli


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Gordonibacter sp.


organism_name: Collinsella aerofaciens


organism_name: Bifidobacterium longum


organism_name: Limosilactobacillus fermentum


organism_name: Dorea longicatena


organism_name: Eggerthellaceae bacterium


organism_name: Hominenteromicrobium sp.


organism_name: Klebsiella aerogenes


organism_name: Eubacteriales bacterium


organism_name: Blautia wexlerae


organism_name: Christensenellales bacterium


organism_name: Klebsiella pneumoniae


organism_name: Adlercreutzia sp.


organism_name: Lacticaseibacillus rhamnosus


organism_name: Anaerobutyricum hallii


organism_name: Evtepia gabavorous


organism_name: Streptococcus salivarius


organism_name: Streptococcus sp.


organism_name: Escherichia coli


organism_name: Faecalibacterium prausnitzii


organism_name: Ruminococcus sp.


organism_name: Alistipes onderdonkii


organism_name: Clostridia bacterium


organism_name: Bifidobacterium adolescentis


organism_name: Candidatus Ventricola sp.


organism_name: Oscillospiraceae bacterium


organism_name: Bifidobacterium longum


organism_name: Barnesiella intestinihominis


organism_name: Klebsiella pneumoniae


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Slackia piriformis


organism_name: Bifidobacterium catenulatum


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Pauljensenia sp.


excluded_from_refseq: unverified source organism; from large multi-isolate project

organism_name: Citrobacter braakii


organism_name: Blautia obeum


organism_name: Acinetobacter baumannii


organism_name: Pseudomonas putida


organism_name: Citrobacter freundii


organism_name: Alistipes putredinis


organism_name: Evtepia sp.


organism_name: Gemmiger qucibialis


organism_name: Agathobaculum butyriciproducens


organism_name: Collinsella sp.


organism_name: Blautia sp.


organism_name: Pseudomonas aeruginosa


organism_name: Klebsiella pneumoniae


organism_name: Escherichia coli


organism_name: Hominenteromicrobium sp.


organism_name: Eggerthellaceae bacterium


organism_name: Gordonibacter pamelaeae


organism_name: Klebsiella aerogenes


organism_name: Faecalibacterium sp.


organism_name: Alistipes inops


organism_name: Pseudomonas putida


organism_name: Oscillospiraceae bacterium


organism_name: Citrobacter freundii


organism_name: Ruthenibacterium lactatiformans


organism_name: Gemmiger formicilis


organism_name: Klebsiella oxytoca


organism_name: Gemmiger qucibialis


organism_name: Bifidobacterium longum


organism_name: Collinsella sp.


organism_name: Bacteroides uniformis


organism_name: Coriobacteriales bacterium


organism_name: Acinetobacter baumannii


organism_name: Christensenellales bacterium


organism_name: Klebsiella pneumoniae


organism_name: Escherichia coli


organism_name: Blautia sp.


organism_name: Blautia wexlerae


organism_name: Candidatus Fimenecus sp.


organism_name: Ruminococcus sp.


organism_name: Pseudomonas aeruginosa


organism_name: Acutalibacteraceae bacterium


organism_name: Citrobacter freundii


organism_name: Waltera sp.


organism_name: Eggerthellaceae bacterium


organism_name: Fusicatenibacter saccharivorans


organism_name: Collinsella sp.


organism_name: Candidatus Ventricola sp.


organism_name: Alistipes putredinis


organism_name: Parabacteroides distasonis


organism_name: Sutterella wadsworthensis


organism_name: Slackia isoflavoniconvertens


organism_name: Barnesiella intestinihominis


organism_name: Klebsiella pneumoniae


organism_name: Escherichia coli


organism_name: Agathobaculum sp.


organism_name: Hominenteromicrobium sp.


organism_name: Holdemanella biformis


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small


organism_name: Acinetobacter baumannii


excluded_from_refseq: derived from metagenome

organism_name: Ellagibacter isourolithinifaciens


organism_name: Klebsiella oxytoca


organism_name: Citrobacter gillenii


organism_name: Adlercreutzia equolifaciens subsp. celatus


organism_name: Gemmiger qucibialis


organism_name: Eggerthellaceae bacterium


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Shigella sonnei


organism_name: Shigella flexneri


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Christensenellales bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Ventricola sp.


organism_name: Escherichia coli


organism_name: Lachnospiraceae bacterium


organism_name: Evtepia gabavorous


organism_name: Hominenteromicrobium sp.


organism_name: Agathobaculum sp.


organism_name: Ellagibacter isourolithinifaciens


organism_name: Citrobacter braakii


organism_name: Citrobacter freundii


organism_name: Adlercreutzia equolifaciens subsp. celatus


organism_name: Ruminiclostridium sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Anaerostipes hadrus


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Slackia isoflavoniconvertens


organism_name: Bifidobacterium longum


organism_name: Gemmiger qucibialis


organism_name: Peptococcaceae bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Ruminococcus sp.


organism_name: Blautia wexlerae


organism_name: Senegalimassilia anaerobia


organism_name: Gemmiger formicilis


organism_name: Bifidobacterium adolescentis


organism_name: Collinsella sp.


organism_name: Agathobacter rectalis


organism_name: Allocoprococcus comes


organism_name: Gordonibacter pamelaeae


organism_name: Citrobacter braakii


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Olsenella timonensis


organism_name: Candidatus Fimisoma sp.


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Parolsenella catena


organism_name: Phocaeicola vulgatus


organism_name: Enterococcus faecium


organism_name: Eggerthellaceae bacterium


organism_name: Segatella copri


organism_name: Klebsiella ornithinolytica


organism_name: Enterococcus faecalis


organism_name: Hominenteromicrobium sp.


organism_name: Parabacteroides distasonis


organism_name: Klebsiella pneumoniae


organism_name: Blautia wexlerae


organism_name: Escherichia coli


organism_name: Bifidobacterium adolescentis


organism_name: Acidaminococcus fermentans


organism_name: Alistipes putredinis


organism_name: Salmonella enterica


organism_name: Anaerobutyricum hallii


organism_name: Agathobaculum sp.


organism_name: Listeria monocytogenes


organism_name: Candidatus Fimivicinus sp.


organism_name: Agathobacter rectalis


organism_name: Faecalibacterium prausnitzii


organism_name: Collinsella sp.


organism_name: Blautia sp.


organism_name: Dialister sp.


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Akkermansia muciniphila


organism_name: Oscillospiraceae bacterium


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Bifidobacterium adolescentis


organism_name: Bifidobacterium longum


organism_name: Agathobaculum butyriciproducens


organism_name: Christensenellales bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Slackia isoflavoniconvertens


organism_name: Salmonella enterica subsp. enterica serovar Brandenburg


organism_name: Evtepia gabavorous


organism_name: Salmonella enterica subsp. enterica serovar Uganda


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Senegalimassilia anaerobia


asm_submitter: NJ DOH Public Health Laboratories microbial pathogen submission group

organism_name: Vibrio parahaemolyticus


organism_name: Peptococcaceae bacterium


organism_name: Hominenteromicrobium sp.


organism_name: Ellagibacter isourolithinifaciens


organism_name: Aeromonas salmonicida subsp. salmonicida


organism_name: Escherichia coli


organism_name: Aeromonas salmonicida subsp. pectinolytica


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Scybalosoma faecavium


organism_name: Eubacteriales bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Acutalibacteraceae bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Alistipes onderdonkii


organism_name: Alistipes shahii


organism_name: Candidatus Limisoma sp.


organism_name: Christensenellales bacterium


organism_name: Gemmiger qucibialis


organism_name: Ruminococcus sp.


organism_name: Faecousia sp.


organism_name: Alistipes finegoldii


organism_name: Aeromonas salmonicida subsp. salmonicida


organism_name: Lachnospiraceae bacterium


organism_name: Eubacterium sp.


organism_name: Alistipes communis


organism_name: Barnesiella intestinihominis


organism_name: Candidatus Evtepia excrementipullorum


organism_name: Blautia wexlerae


organism_name: Clostridioides difficile


organism_name: Roseburia hominis


organism_name: Aeromonas salmonicida


organism_name: Mediterraneibacter torques


organism_name: Candidatus Ventricola sp.


organism_name: Klebsiella pneumoniae


organism_name: Christensenellales bacterium


organism_name: Bilophila wadsworthia


organism_name: Odoribacter splanchnicus


organism_name: Streptococcus pyogenes


organism_name: Candidatus Allocopromorpha sp.


organism_name: Escherichia coli


organism_name: Citrobacter freundii


organism_name: Parabacteroides distasonis


organism_name: Alistipes putredinis


organism_name: Alistipes onderdonkii


organism_name: Oscillospiraceae bacterium


organism_name: Butyribacter sp.


organism_name: Butyricicoccus sp.


organism_name: Emergencia timonensis


organism_name: Eggerthella lenta


organism_name: Clostridia bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: Bacteroides uniformis


organism_name: Bacteroides sp.


organism_name: Christensenellales bacterium


organism_name: Streptococcus pyogenes


organism_name: Faecousia sp.


organism_name: Longicatena caecimuris


organism_name: Candidatus Alistipes avistercoris


organism_name: Sutterella wadsworthensis


organism_name: Dialister invisus


organism_name: Prevotella sp.


organism_name: Lachnospira eligens


organism_name: Oscillospiraceae bacterium


organism_name: Collinsella sp.


organism_name: Ruminococcus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Alistipes putredinis


organism_name: Bifidobacterium bifidum


organism_name: Dysosmobacter sp.


organism_name: Streptococcus pyogenes


organism_name: Alistipes communis


organism_name: Coriobacteriales bacterium


organism_name: Barnesiella intestinihominis


organism_name: Christensenellales bacterium


organism_name: Bifidobacterium longum


organism_name: Candidatus Limivicinus sp.


organism_name: Gemmiger formicilis


organism_name: Bifidobacterium adolescentis


organism_name: Oscillospiraceae bacterium


organism_name: Eubacteriales bacterium


organism_name: Collinsella aerofaciens


organism_name: Faecousia sp.


organism_name: Candidatus Alistipes avistercoris


organism_name: Dorea sp.


asm_submitter: USDA, ARS, WRRC

organism_name: Salmonella enterica


organism_name: Agathobaculum sp.


organism_name: Streptococcus pyogenes


asm_submitter: Wageningen Bioveterinary Research

organism_name: Mammaliicoccus sciuri


organism_name: Staphylococcus arlettae


organism_name: Enterococcus faecalis


organism_name: Bacillus cereus


organism_name: Staphylococcus gallinarum


organism_name: Proteus mirabilis


organism_name: Enterobacter hormaechei


organism_name: Klebsiella oxytoca


asm_submitter: Public Health Agency of Canada

organism_name: Mycobacterium tuberculosis variant caprae


asm_submitter: University Hospital Muenster

organism_name: Klebsiella pneumoniae


organism_name: Staphylococcus warneri


organism_name: Klebsiella aerogenes


asm_submitter: University of Newcastle

organism_name: Cylindrospermopsis raciborskii AWT205


asm_submitter: Ocean University of China

organism_name: Psychrobacter faecalis


organism_name: Rosistilla oblonga


organism_name: Neptuniibacter pectenicola


organism_name: Streptococcus pyogenes


organism_name: Enterococcus faecium


organism_name: Kiloniella sp.


organism_name: Bizionia sp.


organism_name: Marinobacter sp.


organism_name: Marinomonas gallaica


asm_submitter: South Carolina Dept. of Health & Environmental Control

organism_name: Listeria monocytogenes


organism_name: Idiomarina abyssalis


organism_name: Aeromonas salmonicida subsp. smithia


asm_submitter: FDA Center for Food Safety and Applied Nutrition


organism_name: Enterococcus faecalis


organism_name: Devosiaceae bacterium


organism_name: Vibrio sp.


organism_name: Methylophaga sp.


organism_name: Aeromonas salmonicida subsp. salmonicida


organism_name: Celeribacter sp.


organism_name: Aeromonas salmonicida subsp. masoucida


organism_name: Pusillimonas sp.


organism_name: Nitratireductor aquimarinus


organism_name: Celeribacter halophilus


organism_name: Aeromonas salmonicida subsp. pectinolytica


organism_name: Microbacterium sp.


organism_name: Hoeflea sp.


organism_name: Thalassospira alkalitolerans


organism_name: Gimesia sp.


organism_name: Pseudomonas sp.


organism_name: Aeromonas salmonicida


organism_name: Verrucomicrobiales bacterium


organism_name: Idiomarina sp.


organism_name: Listeria monocytogenes


organism_name: Kordiimonas sp.


organism_name: Halarcobacter sp.


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


organism_name: Stutzerimonas xanthomarina


organism_name: Xanthomarina gelatinilytica


asm_submitter: Vet-LIRN-CVM-FDA

organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Corynebacterium variabile


organism_name: Rhodanobacter sp.


organism_name: Roseibium sp.


organism_name: Citrobacter braakii


organism_name: Microbacterium sp.


organism_name: Aeromonas salmonicida subsp. salmonicida


organism_name: Maricaulis maris


organism_name: Celeribacter sp.


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Aeromonas salmonicida subsp. pectinolytica


organism_name: Owenweeksia sp.


organism_name: Erythrobacter aureus


organism_name: Marinobacterium sp.


organism_name: Halobacteriovorax sp.


asm_submitter: University of Verona

organism_name: Pediococcus acidilactici


organism_name: Balneola sp.


asm_submitter: Institute of Marine Research

organism_name: Escherichia coli


organism_name: Halarcobacter sp.


organism_name: Hoeflea sp.


organism_name: Maricaulis sp.


organism_name: Fusibacter sp.


organism_name: Roseibium sp.


organism_name: Aeromonas salmonicida subsp. masoucida


organism_name: Aeromonas salmonicida subsp. salmonicida


isolate: PUCDLZQ

organism_name: Clostridioides difficile


organism_name: Marinobacter lipolyticus


organism_name: Devosia sp.


organism_name: Salipiger sp.


organism_name: Celeribacter sp.


organism_name: Owenweeksia sp.


organism_name: Acinetobacter baumannii


organism_name: Aeromonas salmonicida


organism_name: Verrucomicrobiales bacterium


organism_name: Idiomarina abyssalis


organism_name: Vreelandella venusta


organism_name: Alcanivorax sp.


organism_name: Thalassospira lucentensis


organism_name: Stappia sp.


organism_name: Devosiaceae bacterium


organism_name: Winogradskyella sediminis


organism_name: Paracoccaceae bacterium


asm_submitter: CDC

organism_name: Escherichia coli


organism_name: Gimesia sp.


organism_name: Xanthomarina gelatinilytica


organism_name: Roseibium sp.


organism_name: Neoaquamicrobium sediminum


organism_name: Salmonella enterica subsp. enterica serovar Muenster


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Rhodospirillales bacterium


organism_name: Salmonella enterica subsp. enterica serovar Rissen


organism_name: Methylophaga sp.


organism_name: Arenibacter sp.


organism_name: Roseovarius sp.


organism_name: Salipiger sp.


organism_name: Rhodobacter sp.


organism_name: Kordiimonas sp.


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Alloyangia pacifica


organism_name: Antarctobacter sp.


organism_name: Devosiaceae bacterium


organism_name: Paracoccaceae bacterium


organism_name: Aequorivita soesokkakensis


organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Flavobacterium sp.


organism_name: Salmonella enterica subsp. enterica serovar Give


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Vibrio alginolyticus


organism_name: Pseudoalteromonas atlantica


organism_name: Vibrio furnissii


organism_name: Sulfitobacter sp.


organism_name: Gallaecimonas pentaromativorans


organism_name: Thioclava sp.


organism_name: Leisingera sp.


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Gimesia benthica


organism_name: Escherichia coli


organism_name: Rhodospirillales bacterium


organism_name: Marinobacter sp.


organism_name: Stutzerimonas xanthomarina


organism_name: Novipirellula galeiformis


organism_name: Marinobacterium stanieri


organism_name: Shigella flexneri


organism_name: Providencia rettgeri


organism_name: Owenweeksia hongkongensis


organism_name: Marinovum sp.


organism_name: Xanthomarina gelatinilytica


organism_name: Nitratireductor aquimarinus


organism_name: Marinomonas shanghaiensis


organism_name: Minwuia sp.


organism_name: Pseudidiomarina aestuarii


organism_name: Erythrobacter aureus


organism_name: Halomonas sp.


organism_name: Acholeplasmataceae bacterium


organism_name: Devosiaceae bacterium


organism_name: Epibacterium sp.


organism_name: Ferrimonas sp.


organism_name: Marinobacterium sp.


organism_name: Nitrincola sp.


organism_name: Oceanospirillum sp.


organism_name: Natronincolaceae bacterium


organism_name: Aequorivita sp.


organism_name: Acetoanaerobium sticklandii


organism_name: Sphaerochaeta sp.


organism_name: Thalassospira sp.


organism_name: Stutzerimonas xanthomarina


organism_name: Gimesia maris


organism_name: Terasakiella pusilla


organism_name: Aequorivita vladivostokensis


organism_name: Flavobacterium alkalisoli


organism_name: Kordiimonas sp.


organism_name: Gimesia chilikensis


organism_name: Halopseudomonas sabulinigri


organism_name: Idiomarina abyssalis


organism_name: Allomuricauda sp.


organism_name: Paremcibacter congregatus


organism_name: Rosistilla oblonga


organism_name: Bacteriovoracaceae bacterium


organism_name: Roseovarius sp.


organism_name: Pelagibacterium sp.


organism_name: Stutzerimonas stutzeri


organism_name: Tritonibacter mobilis


organism_name: Phaeobacter gallaeciensis


organism_name: Motiliproteus sp.


organism_name: Thalassospira alkalitolerans


organism_name: Paracoccaceae bacterium


organism_name: Denitrificimonas caeni


organism_name: Aequorivita sp.


organism_name: Oceanospirillum sp.


organism_name: Stappiaceae bacterium


organism_name: Winogradskyella sp.


organism_name: Arcobacteraceae bacterium


organism_name: Pseudidiomarina aquimaris


organism_name: Stutzerimonas xanthomarina


organism_name: Polaribacter sp.


organism_name: Tenacibaculum sp.


organism_name: Terasakiella pusilla


organism_name: Kangiella sp.


organism_name: Bizionia sp.


organism_name: Marinobacterium sp.


organism_name: Bacteriovoracaceae bacterium


organism_name: Halarcobacter sp.


organism_name: Idiomarina sp.


organism_name: Paracoccaceae bacterium


organism_name: Psychromonas sp.


organism_name: Spongiibacter tropicus


organism_name: Alcanivorax sp.


organism_name: Maricaulis salignorans


organism_name: Aequorivita sp.


organism_name: Halobacteriovorax marinus


organism_name: Maricaulis sp.


organism_name: Idiomarina abyssalis


organism_name: Stutzerimonas xanthomarina


organism_name: Shewanella sp.


organism_name: Ectopseudomonas khazarica


organism_name: Cobetia marina


organism_name: Roseibium aggregatum


organism_name: Vibrio diabolicus


organism_name: Pseudomonas sp.


organism_name: Nitratireductor aquimarinus


organism_name: Owenweeksia hongkongensis


organism_name: Neptuniibacter pectenicola


organism_name: Paracoccaceae bacterium


organism_name: Celeribacter halophilus


organism_name: Joostella sp.


organism_name: Winogradskyella sediminis


organism_name: Arthrobacter sp.


organism_name: Halomonas sp.


organism_name: Thalassospira alkalitolerans


organism_name: Gallaecimonas pentaromativorans


organism_name: Gimesia sp.


organism_name: Denitrificimonas caeni


organism_name: Thalassoglobus sp.


organism_name: Tritonibacter mobilis


organism_name: Marinomonas sp.


organism_name: Enterococcus casseliflavus


organism_name: Amphritea sp.


organism_name: Castellaniella sp.


organism_name: Vibrio sp.


organism_name: Galbibacter sp.


organism_name: Corynebacterium variabile


organism_name: Celeribacter sp.


organism_name: Sediminicola sp.


organism_name: Methylophaga sp.


organism_name: Marinobacter sp.


organism_name: Klebsiella huaxiensis


organism_name: Pseudomonas sp.


organism_name: Paremcibacter sp.


organism_name: Oceanimonas baumannii


organism_name: Vibrio diabolicus


organism_name: Hoeflea sp.


organism_name: Marinobacterium iners


organism_name: Cycloclasticus pugetii


organism_name: Achromobacter spanius


organism_name: Mesonia sp.


organism_name: Marinomonas communis


organism_name: Marinobacterium stanieri


organism_name: Halomonas cupida


organism_name: Bacteriovoracaceae bacterium


organism_name: Marinomonas sp.


organism_name: Thalassospira lucentensis


organism_name: Methylophaga sp.


organism_name: Xanthomarina gelatinilytica


organism_name: Kangiella sp.


organism_name: Gimesia chilikensis


organism_name: Aequorivita vladivostokensis


organism_name: Thalassospira alkalitolerans


organism_name: Verrucomicrobiales bacterium


organism_name: Pseudidiomarina donghaiensis


organism_name: Roseovarius sp.


organism_name: Pararhodobacter oceanensis


organism_name: Rhodospirillales bacterium


organism_name: Marinobacterium iners


organism_name: Devosiaceae bacterium


organism_name: Bacteroidota bacterium


organism_name: Aequorivita sp.


organism_name: Thalassospira tepidiphila


organism_name: Pseudidiomarina sp.


organism_name: Bacteriovoracaceae bacterium


organism_name: Owenweeksia sp.


organism_name: Brevundimonas sp.


organism_name: Roseimaritima sp.


organism_name: Neptunomonas sp.


organism_name: Balneola sp.


organism_name: Terasakiella sp.


organism_name: Pseudomonas sp.


organism_name: Tritonibacter scottomollicae


organism_name: Psychrobacter alimentarius


organism_name: Thalassospira xiamenensis


organism_name: Microbacterium maritypicum


organism_name: Pseudophaeobacter sp.


organism_name: Devosiaceae bacterium


organism_name: Aequorivita viscosa


organism_name: Xanthomarina gelatinilytica


organism_name: Bizionia sp.


organism_name: Pseudoalteromonas tetraodonis


organism_name: Aequorivita aquimaris


organism_name: Owenweeksia hongkongensis


organism_name: Terasakiella pusilla


organism_name: Parasphingorhabdus sp.


organism_name: Idiomarina abyssalis


organism_name: Pseudidiomarina sp.


organism_name: Crocinitomicaceae bacterium


organism_name: Arenibacter amylolyticus


organism_name: Thalassospira sp.


organism_name: Balneola sp.


organism_name: Parvibaculaceae bacterium


organism_name: Poseidonibacter sp.


organism_name: Salibacteraceae bacterium


organism_name: Ancylomarina sp.


organism_name: Stappia sp.


organism_name: Halarcobacter sp.


organism_name: Neptunicella sp.


organism_name: Weeksellaceae bacterium


organism_name: Acholeplasmataceae bacterium


organism_name: Qipengyuania sp.


organism_name: Thalassospira povalilytica


organism_name: Kordiimonas sp.


organism_name: Rosistilla oblonga


organism_name: Arcobacteraceae bacterium


organism_name: Maricaulis sp.


organism_name: Pseudodonghicola sp.


organism_name: Ancylomarina subtilis


organism_name: Bacteriovoracaceae bacterium


organism_name: Erythrobacter aureus


organism_name: Terasakiella pusilla


organism_name: Parvibaculaceae bacterium


organism_name: Stutzerimonas nitrititolerans


organism_name: Nitratireductor aquimarinus


organism_name: Tritonibacter scottomollicae


organism_name: Oceanospirillum sp.


organism_name: Kangiella sp.


organism_name: Tritonibacter mobilis


organism_name: Aequorivita viscosa


organism_name: Primorskyibacter flagellatus


organism_name: Brumimicrobium sp.


organism_name: Xanthomarina gelatinilytica


organism_name: Balneola sp.


organism_name: Shewanella chilikensis


organism_name: Paracoccaceae bacterium


organism_name: Pseudidiomarina sp.


organism_name: Aequorivita sp.


organism_name: Terasakiella sp.


organism_name: Owenweeksia sp.


organism_name: Maritimibacter sp.


organism_name: Fulvivirga sp.


organism_name: Kiloniellaceae bacterium


organism_name: Maricaulaceae bacterium


organism_name: Acinetobacter venetianus


organism_name: Pseudomonas abyssi


organism_name: Oceanisphaera sp.


organism_name: Rheinheimera aquimaris


organism_name: Marinobacter segnicrescens


organism_name: Salipiger sp.


organism_name: Nitratireductor aquimarinus


organism_name: Pusillimonas sp.


organism_name: Maricaulis sp.


organism_name: Aequorivita aquimaris


organism_name: Methylophaga thalassica


organism_name: Tritonibacter mobilis


organism_name: Verrucomicrobiales bacterium


organism_name: Emcibacter sp.


organism_name: Corallibacter sp.


organism_name: Bacteriovoracaceae bacterium


organism_name: Celeribacter halophilus


organism_name: Glutamicibacter protophormiae


organism_name: Enterobacteriaceae bacterium


organism_name: Microbacterium sp.


organism_name: Glutamicibacter arilaitensis


organism_name: Rosistilla oblonga


organism_name: Winogradskyella arenosi


organism_name: Marinobacter sp.


organism_name: Pseudidiomarina aquimaris


organism_name: Pseudidiomarina gelatinasegens


organism_name: Mesoflavibacter zeaxanthinifaciens


organism_name: Halpernia sp.


organism_name: Maricaulis sp.


organism_name: Marinomonas fungiae


organism_name: Rhodanobacter sp.


organism_name: Alcanivorax sp.


organism_name: Castellaniella sp.


organism_name: Aequorivita soesokkakensis


organism_name: Celeribacter sp.


organism_name: Luteimonas mephitis


organism_name: Aequorivita vladivostokensis


organism_name: Zunongwangia sp.


organism_name: Stutzerimonas stutzeri


organism_name: Celeribacter baekdonensis


organism_name: Vibrio rumoiensis


organism_name: Pseudoalteromonas lipolytica


organism_name: Marinomonas sp.


organism_name: Parasphingorhabdus sp.


organism_name: Tenacibaculum sp.


organism_name: Paracoccaceae bacterium


organism_name: Pseudomonas sp.


organism_name: Bizionia paragorgiae


organism_name: Tritonibacter mobilis


organism_name: Nitratireductor aquimarinus


organism_name: Aequorivita sp.


organism_name: Xanthomarina gelatinilytica


organism_name: Maricaulis sp.


organism_name: Thalassoglobus sp.


organism_name: Thalassospira sp.


organism_name: Bacteriovoracaceae bacterium


organism_name: Bizionia sp.


organism_name: Pusillimonas sp.


organism_name: Kiloniella sp.


organism_name: Pseudophaeobacter arcticus


organism_name: Oceanihabitans sediminis


organism_name: Alcanivorax sp.


organism_name: Celeribacter sp.


organism_name: Pseudidiomarina sp.


organism_name: Pararhodobacter aggregans


organism_name: Oceanospirillum sp.


organism_name: Kordiimonas sp.


organism_name: Allomuricauda sp.


organism_name: Halarcobacter sp.


organism_name: Terasakiella sp.


organism_name: Flavobacterium beibuense


organism_name: Gelidibacter japonicus


organism_name: Hoeflea sp.


organism_name: Thalassospira povalilytica


asm_submitter: Luxembourg Institute of Science and Technology

organism_name: Campylobacter sp. LH-2024


asm_submitter: Sun Yat-sen University

organism_name: Bacillus haimaensis


asm_submitter: Changzhou University

organism_name: Paracoccus sp. TD-10


asm_submitter: MJP Rohilkhand University, Bareilly

organism_name: Bacillus sp. AK25


asm_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

organism_name: Streptomyces sp. NPDC056264


organism_name: Streptomyces sp. NPDC056297


organism_name: Streptomyces sp. NPDC056231


asm_submitter: Children's Hospital of Fudan University

organism_name: Klebsiella pneumoniae


excluded_from_refseq: annotation fails completeness check; from large multi-isolate project


asm_submitter: Los Angeles County Public Health Lab microbial pathogen submission group

organism_name: Streptococcus pneumoniae


organism_name: Acinetobacter baumannii


organism_name: Escherichia coli


organism_name: Pseudomonas aeruginosa


organism_name: Neisseria gonorrhoeae


organism_name: Haemophilus influenzae


organism_name: Streptococcus pyogenes


organism_name: Neisseria meningitidis


asm_submitter: Yangzhou University

organism_name: Shewanella algae


asm_submitter: Federal University of Health Sciences Ila Orangu

organism_name: Staphylococcus aureus


asm_submitter: Zhejiang Chinese Medical University


asm_submitter: South China Agricultural University

organism_name: Pseudomonas shirazica


asm_submitter: Institute of Microbiology, Chinese Academy of Sciences

organism_name: Flavobacterium sp. ZB4R12


excluded_from_refseq: unverified source organism

organism_name: Stenotrophomonas maltophilia


organism_name: Pseudomonas vlassakiae


organism_name: Stenotrophomonas geniculata


organism_name: Enterobacter pseudoroggenkampii


organism_name: Acinetobacter pittii


organism_name: Acinetobacter junii


organism_name: Klebsiella michiganensis


organism_name: Enterobacter hormaechei


organism_name: Enterobacter kobei


organism_name: Aeromonas sp. PS2Canimalfood6


organism_name: Klebsiella variicola


organism_name: Bacillus inaquosorum


organism_name: Enterobacter quasiroggenkampii


organism_name: Enterobacter mori


organism_name: Klebsiella pneumoniae


asm_submitter: Escuela Nacional de Ciencias Biologicas

organism_name: Streptomyces albidoflavus


asm_submitter: CEITEC VETUNI

organism_name: Escherichia coli


asm_submitter: Canadian Research Institute for Food Safety

organism_name: Citrobacter cronae


organism_name: Citrobacter portucalensis


organism_name: Salmonella enterica subsp. enterica serovar Weltevreden


organism_name: Salmonella enterica subsp. enterica serovar Soerenga


organism_name: Salmonella enterica subsp. enterica serovar Poona


organism_name: Salmonella enterica subsp. enterica serovar Panama


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Give


organism_name: Salmonella enterica subsp. enterica serovar Albany


asm_submitter: University of Foggia

organism_name: Enterococcus faecalis


organism_name: Enterococcus faecium


organism_name: Shewanella algae


organism_name: Shewanella marisflavi


asm_submitter: zhejiang university


asm_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg

organism_name: Aliarcobacter lanthieri


organism_name: Klebsiella pneumoniae


asm_submitter: Shantou University

organism_name: Opacimonas immobilis


asm_submitter: Jeju national university

organism_name: Flavobacterium adiutor


annotation_name: Annotation submitted by Animal and Plant Quarantine Agency

annotation_provider: Animal and Plant Quarantine Agency

asm_submitter: Animal and Plant Quarantine Agency

organism_name: Listeria monocytogenes


asm_submitter: National Research and Innovation Agency

excluded_from_refseq: missing rRNA genes


asm_submitter: Centers for Disease Control, Taiwan

organism_name: Salmonella enterica subsp. enterica serovar Agona


asm_submitter: Pukyong national university

organism_name: Edwardsiella piscicida


asm_submitter: Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences

organism_name: Lacticaseibacillus paracasei


asm_submitter: university of minnesota

organism_name: Pimelobacter simplex


organism_name: Mycobacterium sp. PDNC021


asm_name: Bacillus nematocida BN16

asm_submitter: Nanyang Normal University

organism_name: Bacillus nematocida


asm_submitter: Makerere University

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Proteus mirabilis


asm_submitter: Institute of Biology Leiden

organism_name: Paenibacillus sp. JJ1722


asm_submitter: National Yang Ming Chiao Tung University

organism_name: Escherichia coli


asm_submitter: Ondokuz Mayis University, Faculty of Veterinary Medicine

organism_name: Mycobacterium sp. 134


organism_name: Mycobacterium sp. 48b


infraspecific_name: strain=NNEc 2823


organism_name: Mycobacteroides chelonae


organism_name: Mycolicibacterium senegalense


asm_submitter: Tarim University

organism_name: Staphylococcus aureus


organism_name: Mycolicibacterium peregrinum


asm_submitter: Bangor University

excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Synergistaceae bacterium DZ-S5


asm_submitter: South China Agricultural University

organism_name: Acinetobacter soli


asm_submitter: Smith College

organism_name: Streptomyces sp. AF1B


asm_submitter: JiLin Agricultural Scuence and Technolog

organism_name: Streptococcus pluranimalium


infraspecific_name: strain=NNEc 2833


infraspecific_name: strain=NNEc 2811


infraspecific_name: strain=NNEc 2842


infraspecific_name: strain=NNEc 2734


infraspecific_name: strain=NNEfae 3117

organism_name: Enterococcus faecium


asm_submitter: Tel Aviv Sourasky Medical Center

organism_name: Enterobacter cloacae complex sp. 6730903


asm_submitter: Ivan Franko National University of Lviv

infraspecific_name: strain=IMV Ac-5025

organism_name: Streptomyces syringium


organism_name: Enterobacter cloacae complex sp.6730869


organism_name: Enterobacter cloacae complex sp.6730722


organism_name: Enterobacter cloacae complex sp.6730764


organism_name: Enterobacter cloacae complex sp.6730737


organism_name: Enterobacter cloacae complex sp.6730661


organism_name: Enterobacter cloacae complex sp.6730515


organism_name: Enterobacter cloacae complex sp.6701430


organism_name: Enterobacter cloacae complex sp.6730552


organism_name: Enterobacter cloacae complex sp.6722787


organism_name: Enterobacter cloacae complex sp.6701988


organism_name: Enterobacter cloacae complex sp.6701062


organism_name: Enterobacter cloacae complex sp.6700776


organism_name: Enterobacter cloacae complex sp.6700816


organism_name: Enterobacter cloacae complex sp.6700005


asm_submitter: Institute of Microbiology

organism_name: Mycoplasma haliaeeti


asm_submitter: Institute of Microbiology, Chinese Academy of Sciences

organism_name: Flavobacterium esculini


organism_name: Flavobacterium amylolyticum


organism_name: Flavobacterium glucosi


organism_name: Mycoplasma paraquilae


organism_name: Mycoplasma aquilae


asm_submitter: NIVIP

infraspecific_name: strain=PD 8157

organism_name: Ralstonia pseudosolanacearum


infraspecific_name: strain=PD 7424


infraspecific_name: strain=PD 7902


infraspecific_name: strain=PD 7413


infraspecific_name: strain=PD 3822


organism_name: Mycoplasma milvi


asm_submitter: WRAIR-Africa (Kenya)

organism_name: Corynebacterium hindlerae


asm_submitter: Loyola University Chicago

organism_name: Dermabacter hominis


asm_submitter: The Independent Schools Foundation Academy

organism_name: Vibrio owensii


organism_name: Vibrio harveyi


organism_name: Vibrio parahaemolyticus


organism_name: Vibrio campbellii


excluded_from_refseq: annotation fails completeness check


infraspecific_name: strain=PD 8575


infraspecific_name: strain=CREA-DC 2105 (I2120)


infraspecific_name: strain=PD 8184


infraspecific_name: strain=PD 4138


infraspecific_name: strain=PD 7098


infraspecific_name: strain=PD 7901


infraspecific_name: strain=PD 8131


infraspecific_name: strain=PD 4190


infraspecific_name: strain=PD 2272


infraspecific_name: strain=PD 3196


infraspecific_name: strain=PD 5415


infraspecific_name: strain=RC5-2 CH


infraspecific_name: strain=PD 7123


infraspecific_name: strain=PD 5777


asm_submitter: University of Texas at Dallas

organism_name: Marinobacter sp. SBS5


organism_name: Sulfitobacter sp. SBS6


organism_name: Bacillus sp. SBS7


organism_name: Mycoplasma haliaeeti


infraspecific_name: strain=CREA-DC 2104 (I2116)


infraspecific_name: strain=PD 3597


infraspecific_name: strain=NIB Z 3683


infraspecific_name: strain=PD 8621


asm_submitter: Shanxi Agricultural University

organism_name: Christiangramia aquimixticola


infraspecific_name: strain=PD 8473


infraspecific_name: strain=KMM 6048

organism_name: Christiangramia marina


asm_submitter: Pondicherry University

organism_name: Methanosarcina mazei


asm_submitter: Jilin Agricultural Science and Technology University

organism_name: Aerococcus viridans


asm_submitter: Vavilov Institute of General Genetics

organism_name: Faecalibacterium taiwanense


organism_name: Faecalibacterium prausnitzii


asm_submitter: United States Department of Agriculture, Agricultural Research Service

organism_name: Bdellovibrio bacteriovorus


organism_name: Faecalibacterium hattorii


infraspecific_name: strain=CR

organism_name: Mycoplasma razini


organism_name: Mycoplasma paraquilae


organism_name: Mycoplasma milvi


organism_name: Ralstonia pseudosolanacearum


infraspecific_name: strain=PD 8114


infraspecific_name: strain=PD 5537


organism_name: Flavobacterium amylolyticum


organism_name: Flavobacterium labens


organism_name: Flavobacterium rhamnosi


organism_name: Flavobacterium glucosi


organism_name: Flavobacterium cryophilum


organism_name: Flavobacterium esculini


organism_name: Flavobacterium pasteuri


organism_name: Flavobacterium frigidum


organism_name: Flavobacterium kochi


organism_name: Flavobacterium glycogeni


asm_submitter: Ondokuz Mayis University, Faculty of Veterinary Medicine

organism_name: Mycolicibacterium fortuitum


organism_name: Bdellovibrio bacteriovorus


organism_name: Mycobacteroides chelonae


organism_name: Mycolicibacterium peregrinum


organism_name: Mycobacteroides abscessus


organism_name: Mycobacterium sp. 23


organism_name: Ralstonia pseudosolanacearum


asm_submitter: Guangdong University of Technology

infraspecific_name: strain=TJ

organism_name: Candidatus Electronema sp. TJ


infraspecific_name: strain=JC

organism_name: Candidatus Electronema sp. JC


infraspecific_name: strain=PJ

organism_name: Candidatus Electronema sp. PJ


infraspecific_name: strain=JM

organism_name: Candidatus Electronema sp. JM


asm_submitter: University of Chicago

infraspecific_name: strain=MVI

organism_name: Serratia marcescens


asm_submitter: Pharmacy faculty

infraspecific_name: strain=SD 70

organism_name: Enterobacter hormaechei


asm_submitter: Capital Institute of Pediatrics

organism_name: Klebsiella pneumoniae


asm_submitter: Ministry of Natural Resources

organism_name: Paenibacillus xylanilyticus


asm_submitter: Georg-August-University Goettingen

organism_name: Arthrobacter sp. N1


asm_submitter: Hunan University of Arts and Science

organism_name: Morganella morganii


asm_submitter: The University of Hong Kong

organism_name: Staphylococcus sp. HKU1


asm_submitter: Northwest A&F University

organism_name: Pantoea agglomerans


asm_submitter: Yunnan agricultural university

infraspecific_name: strain=Bacillius velezensis JYC520

organism_name: Bacillus velezensis


asm_submitter: Universidad de los Andes

infraspecific_name: strain=DSM 43205

organism_name: Rhodococcus opacus


asm_submitter: University of the Witwatersrand

excluded_from_refseq: unverified source organism; annotation fails completeness check; many frameshifted proteins

organism_name: Shigella sonnei


organism_name: Shigella flexneri


excluded_from_refseq: contaminated; annotation fails completeness check; many frameshifted proteins; missing tRNA genes


excluded_from_refseq: contaminated; annotation fails completeness check; many frameshifted proteins


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins; missing tRNA genes


organism_name: Shigella boydii


asm_submitter: naresuan university

organism_name: Xanthomonas oryzae pv. oryzae


asm_name: E

infraspecific_name: strain=E


asm_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

organism_name: Bifidobacterium animalis


organism_name: Candidatus Fimadaptatus sp.


organism_name: Hominenteromicrobium sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Acutalibacteraceae bacterium


organism_name: Slackia isoflavoniconvertens


organism_name: Enterococcus faecalis


organism_name: Eggerthellaceae bacterium


organism_name: Peptococcaceae bacterium


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Akkermansia sp.


organism_name: Evtepia sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Ruthenibacterium lactatiformans


organism_name: Christensenellales bacterium


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Ruminococcus sp.


organism_name: Candidatus Alistipes merdavium


organism_name: Butyricicoccus sp.


organism_name: Anaerovoracaceae bacterium


organism_name: Candidatus Ventricola sp.


organism_name: Coriobacteriales bacterium


organism_name: Candidatus Faecivicinus sp.


organism_name: Ellagibacter isourolithinifaciens


organism_name: Limosilactobacillus oris


organism_name: Oscillospiraceae bacterium


organism_name: Escherichia coli


organism_name: Candidatus Acutalibacter ornithocaccae


organism_name: Gemmiger sp.


organism_name: Candidatus Pullichristensenella sp.


organism_name: Bifidobacterium adolescentis


organism_name: Megasphaera sp.


organism_name: Mediterraneibacter faecis


organism_name: Massilicoli timonensis


organism_name: Bifidobacterium longum


organism_name: Evtepia gabavorous


organism_name: Ruminococcus sp.


organism_name: Bifidobacterium bifidum


organism_name: Ruthenibacterium lactatiformans


organism_name: Coprococcus sp.


organism_name: Candidatus Fimivicinus sp.


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Faecousia sp.


organism_name: Fusicatenibacter sp.


organism_name: Candidatus Ornithomonoglobus sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Candidatus Gemmiger avicola


organism_name: Candidatus Fimadaptatus faecigallinarum


organism_name: Blautia sp.


organism_name: Xanthomonas oryzae pv. oryzae


asm_name: D

infraspecific_name: strain=D


organism_name: Candidatus Gemmiger stercoravium


organism_name: Candidatus Gemmiger stercoripullorum


organism_name: Candidatus Acutalibacter stercoravium


organism_name: Enterococcus faecium


organism_name: Bifidobacterium dentium


organism_name: [Clostridium] scindens


organism_name: Gordonibacter urolithinfaciens


organism_name: Ruthenibacterium sp.


organism_name: Candidatus Scatomorpha merdavium


organism_name: Massilicoli timonensis


organism_name: Eggerthella lenta


organism_name: [Clostridium] innocuum


organism_name: Actinomyces sp.


organism_name: Klebsiella pneumoniae


organism_name: Weissella cibaria


organism_name: Mediterraneibacter gnavus


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Oliverpabstia intestinalis


excluded_from_refseq: derived from metagenome

organism_name: Akkermansia muciniphila


organism_name: Gemmiger qucibialis


organism_name: Bifidobacterium longum


organism_name: Agathobacter rectalis


organism_name: Adlercreutzia sp.


organism_name: Actinomycetota bacterium


organism_name: Anaerovoracaceae bacterium


organism_name: Gemmiger formicilis


organism_name: Candidatus Fimadaptatus sp.


organism_name: Bifidobacterium adolescentis


organism_name: Hominenteromicrobium sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Eggerthellaceae bacterium


organism_name: Oscillospiraceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Collinsella bouchesdurhonensis


organism_name: Coriobacteriales bacterium


organism_name: Senegalimassilia anaerobia


organism_name: Evtepia sp.


organism_name: Ellagibacter isourolithinifaciens


organism_name: Akkermansia sp.


organism_name: Blautia wexlerae


organism_name: Christensenellales bacterium


organism_name: Candidatus Egerieenecus merdigallinarum


organism_name: Anaerovoracaceae bacterium


organism_name: Ruminococcus bromii


organism_name: Candidatus Ventricola sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Bifidobacterium animalis


organism_name: Bifidobacterium longum


organism_name: Eggerthellaceae bacterium


organism_name: Mediterraneibacter faecis


organism_name: Akkermansia muciniphila


organism_name: Ruminococcus sp.


organism_name: Adlercreutzia sp.


organism_name: Faecalibacterium sp.


organism_name: Alistipes putredinis


organism_name: Alistipes finegoldii


organism_name: Collinsella aerofaciens


organism_name: Waltera sp.


organism_name: Agathobacter rectalis


organism_name: Gemmiger formicilis


organism_name: Oscillospiraceae bacterium


organism_name: Streptococcus thermophilus


organism_name: Fusicatenibacter saccharivorans


organism_name: Ellagibacter isourolithinifaciens


organism_name: Acutalibacteraceae bacterium


organism_name: Christensenellales bacterium


organism_name: Blautia wexlerae


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Agathobaculum butyriciproducens


organism_name: Sutterella wadsworthensis


organism_name: Bifidobacterium bifidum


organism_name: Catenibacterium sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Bacteroides uniformis


organism_name: Adlercreutzia sp.


organism_name: Dialister histaminiformans


organism_name: Bifidobacterium longum


organism_name: Parabacteroides distasonis


organism_name: Acidaminococcus intestini


organism_name: Collinsella aerofaciens


organism_name: Phocaeicola dorei


organism_name: Escherichia coli


organism_name: Collinsella sp.


organism_name: Bifidobacterium adolescentis


organism_name: Blautia wexlerae


organism_name: Gemmiger qucibialis


organism_name: Faecalibacterium sp.


organism_name: Bifidobacterium bifidum


organism_name: Roseburia intestinalis


organism_name: Dysosmobacter welbionis


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small


organism_name: Eggerthella lenta


organism_name: Candidatus Fimivicinus sp.


organism_name: Flavonifractor plautii


organism_name: Bifidobacterium longum


organism_name: Bilophila wadsworthia


organism_name: Acutalibacteraceae bacterium


organism_name: Gordonibacter urolithinfaciens


organism_name: Coriobacteriales bacterium


organism_name: Candidatus Ventricola sp.


organism_name: Eggerthellaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Hominenteromicrobium sp.


organism_name: Xanthomonas oryzae pv. oryzae


organism_name: Akkermansia muciniphila


organism_name: Senegalimassilia anaerobia


organism_name: Parabacteroides merdae


organism_name: Ellagibacter isourolithinifaciens


organism_name: Alistipes ihumii


organism_name: Agathobacter rectalis


organism_name: Alistipes finegoldii


organism_name: Bifidobacterium longum


organism_name: Porphyromonas sp.


organism_name: Alistipes communis


organism_name: Gemmiger formicilis


organism_name: Akkermansia sp.


organism_name: Alistipes putredinis


organism_name: Alistipes onderdonkii


organism_name: Oscillospiraceae bacterium


organism_name: Phocaeicola vulgatus


organism_name: Barnesiella intestinihominis


organism_name: Lachnospiraceae bacterium


organism_name: Alistipes shahii


organism_name: Bilophila wadsworthia


organism_name: Burkholderiales bacterium


organism_name: Dysosmobacter sp.


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Barnesiella sp.


organism_name: Collinsella intestinalis


organism_name: Segatella copri


organism_name: Segatella sp.


organism_name: Porphyromonas sp.


excluded_from_refseq: derived from metagenome; genome length too large

organism_name: Alistipes indistinctus


organism_name: Akkermansia sp.


organism_name: Odoribacter sp.


organism_name: Alistipes onderdonkii


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Oscillospiraceae bacterium


organism_name: Alistipes putredinis


organism_name: Akkermansia muciniphila


organism_name: Bacteroides stercoris


organism_name: Barnesiella intestinihominis


organism_name: Ruthenibacterium lactatiformans


organism_name: Bacteroides uniformis


organism_name: Anaerotruncus massiliensis (ex Liu et al. 2021)


organism_name: Mediterraneibacter torques


organism_name: Candidatus Scatavimonas sp.


organism_name: Candidatus Scatomorpha merdavium


organism_name: Alistipes sp.


organism_name: Segatella copri


organism_name: Christensenellales bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Parasutterella excrementihominis


organism_name: Candidatus Fimivicinus sp.


organism_name: Phocaeicola vulgatus


organism_name: Akkermansia muciniphila


organism_name: Xanthomonas oryzae pv. oryzae


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes onderdonkii


organism_name: Alistipes putredinis


organism_name: Segatella sp.


organism_name: Bacteroides fragilis


organism_name: Escherichia coli


organism_name: Phascolarctobacterium sp.


organism_name: Alistipes finegoldii


organism_name: Phocaeicola sp.