organism_name: Bacteroides thetaiotaomicron


asm_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

assembly_level: Contig

assembly_type: haploid

excluded_from_refseq: derived from metagenome

genome_rep: Full

group: bacteria

organism_name: Anaerostipes hadrus

release_type: Major

version_status: latest


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Blautia faecis


organism_name: Veillonella atypica

paired_asm_comp: identical


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Oliverpabstia sp.


organism_name: Enterocloster sp.


organism_name: Streptococcus lutetiensis


organism_name: Faecalibacillus intestinalis


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Roseburia intestinalis


organism_name: Fusicatenibacter saccharivorans


organism_name: Enterococcus durans


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Eggerthella lenta


organism_name: Agathobaculum butyriciproducens


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Collinsella sp.


organism_name: Mediterraneibacter torques


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: [Lactobacillus] rogosae


organism_name: Gemmiger sp.


organism_name: Hominenteromicrobium sp.


organism_name: Bacteroides caccae


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Lachnospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Ruthenibacterium lactatiformans


organism_name: Candidatus Fimivicinus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Blautia sp.


organism_name: Anaerostipes hadrus


organism_name: Fusicatenibacter saccharivorans


organism_name: Eubacterium ventriosum


organism_name: Blautia faecis


organism_name: Faecousia sp.


organism_name: Anaerobutyricum soehngenii


organism_name: Blautia wexlerae


organism_name: Blautia obeum


organism_name: Lachnospira eligens


organism_name: Faecalimonas sp.


organism_name: Waltera sp.


organism_name: Allocoprococcus comes


organism_name: Christensenellales bacterium


organism_name: Phocaeicola sp.


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Ruminococcus sp.


organism_name: Gemmiger sp.


organism_name: Oscillospiraceae bacterium


organism_name: Eubacteriales bacterium


organism_name: Barnesiella intestinihominis


organism_name: Dysosmobacter sp.


organism_name: Alistipes putredinis


organism_name: Alistipes onderdonkii


organism_name: Alistipes communis


organism_name: Christensenellaceae bacterium


organism_name: Akkermansia muciniphila


organism_name: Alistipes dispar


organism_name: Parabacteroides distasonis


organism_name: Candidatus Fimenecus sp.


organism_name: Alphaproteobacteria bacterium


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Alistipes shahii


organism_name: Lawsonibacter sp.


organism_name: Bilophila wadsworthia


organism_name: Agathobaculum sp.


organism_name: Acutalibacteraceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Fusicatenibacter saccharivorans


organism_name: Oscillospiraceae bacterium


organism_name: Barnesiella intestinihominis


organism_name: Collinsella sp.


organism_name: Gemmiger formicilis


organism_name: Dysosmobacter welbionis


organism_name: Flavonifractor plautii


organism_name: Bacteroides uniformis


organism_name: Enterocloster clostridioformis


organism_name: Bifidobacterium pseudolongum


organism_name: Lactobacillus delbrueckii


organism_name: Butyricicoccus sp.


organism_name: Escherichia coli


organism_name: Parasutterella sp.


organism_name: Enterobacter ludwigii


organism_name: Faecalibacterium sp.


organism_name: Ruminococcus sp.


organism_name: Bacteroides faecis


organism_name: [Clostridium] scindens


organism_name: Oscillospiraceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Bacteroides sp.


organism_name: Parabacteroides distasonis


organism_name: Alistipes ihumii


organism_name: Alistipes inops


organism_name: Collinsella sp.


organism_name: Alistipes dispar


organism_name: Barnesiella intestinihominis


organism_name: Candidatus Fimenecus sp.


organism_name: Ruminococcus callidus


organism_name: Fusicatenibacter saccharivorans


organism_name: Blautia wexlerae


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Adlercreutzia equolifaciens subsp. celatus


organism_name: Gemmiger formicilis


organism_name: Alistipes communis


organism_name: Dialister hominis


organism_name: Eggerthellaceae bacterium


organism_name: Parasutterella sp.


organism_name: Ruminococcus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Bifidobacterium longum


organism_name: Alistipes inops


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Akkermansia sp.


organism_name: Collinsella sp.


organism_name: Adlercreutzia equolifaciens


organism_name: Candidatus Limivicinus sp.


organism_name: Parabacteroides distasonis


organism_name: Barnesiella intestinihominis


organism_name: Alistipes onderdonkii


organism_name: Escherichia coli


organism_name: Phocaeicola sp.


organism_name: Faecalibacterium sp.


organism_name: Christensenellales bacterium


organism_name: Rikenella microfusus


organism_name: Sutterella wadsworthensis


organism_name: Ruminococcus sp.


organism_name: Waltera sp.


organism_name: Acidaminococcaceae bacterium


organism_name: Gemmiger qucibialis


organism_name: Alistipes putredinis


organism_name: Hominenteromicrobium sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Ruminococcus callidus


organism_name: Gemmiger formicilis


organism_name: Parasutterella excrementihominis


organism_name: Gemmiger sp.


organism_name: Oscillospiraceae bacterium


organism_name: Dysosmobacter welbionis


organism_name: Lachnospiraceae bacterium


organism_name: Holdemanella biformis


organism_name: Christensenellales bacterium


organism_name: Blautia wexlerae


organism_name: Alistipes onderdonkii


organism_name: Bacteroidaceae bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Alistipes inops


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Barnesiella intestinihominis


organism_name: Parabacteroides distasonis


organism_name: Phascolarctobacterium faecium


organism_name: Bifidobacterium longum


organism_name: Alistipes putredinis


organism_name: Massilistercora timonensis


organism_name: Acutalibacteraceae bacterium


organism_name: Bacteroides stercoris


organism_name: Oscillospiraceae bacterium


organism_name: Collinsella sp.


organism_name: Lachnospiraceae bacterium


organism_name: Christensenellales bacterium


organism_name: Akkermansia muciniphila


organism_name: Gemmiger qucibialis


organism_name: Faecalibacterium prausnitzii


organism_name: Candidatus Merdousia gallistercoris


organism_name: Candidatus Pelethousia gallinarum


organism_name: Candidatus Scatomorpha merdavium


organism_name: [Eubacterium] siraeum


organism_name: Phocaeicola dorei


organism_name: Ruminococcus sp.


organism_name: Parasutterella sp.


organism_name: Bacteroides uniformis


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Bacteroidales bacterium


organism_name: Candidatus Gallimonas sp.


organism_name: Oscillospiraceae bacterium


organism_name: Victivallis vadensis


organism_name: Escherichia coli


organism_name: Prevotellaceae bacterium


organism_name: Adlercreutzia equolifaciens subsp. celatus


organism_name: Alistipes inops


organism_name: Segatella hominis


organism_name: Alistipes onderdonkii


organism_name: Adlercreutzia sp.


organism_name: Gemmiger sp.


organism_name: [Eubacterium] siraeum


organism_name: Agathobaculum butyriciproducens


organism_name: Eggerthellaceae bacterium


organism_name: Streptococcus parasanguinis


organism_name: Angelakisella sp.


organism_name: Faecalibacterium sp.


organism_name: Phocaeicola dorei


organism_name: Christensenellales bacterium


organism_name: Phocaeicola sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroides uniformis


organism_name: Parabacteroides merdae


organism_name: Enterococcus lactis


organism_name: Bifidobacterium bifidum


organism_name: Ruminococcus sp.


organism_name: Bifidobacterium adolescentis


organism_name: Candidatus Fimivicinus sp.


organism_name: Candidatus Limiplasma sp.


organism_name: Alistipes putredinis


organism_name: Akkermansia sp.


organism_name: Collinsella aerofaciens


organism_name: Ruthenibacterium lactatiformans


organism_name: Desulfovibrio fairfieldensis


organism_name: Christensenellales bacterium


organism_name: Parabacteroides distasonis


organism_name: Alistipes shahii


organism_name: Streptococcus salivarius


organism_name: Candidatus Pelethousia gallinarum


organism_name: Cloacibacillus evryensis


organism_name: Pyramidobacter piscolens


organism_name: Faecalibacterium prausnitzii


organism_name: Escherichia coli


organism_name: Bacteroides uniformis


organism_name: Parasutterella excrementihominis


organism_name: Phocaeicola dorei


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroides thetaiotaomicron


organism_name: Alistipes onderdonkii


organism_name: Alistipes ihumii


organism_name: Dialister invisus


organism_name: Eubacterium sp.


organism_name: Alistipes communis


organism_name: Alistipes putredinis


organism_name: Candidatus Fimivicinus sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: [Eubacterium] siraeum


organism_name: Alistipes dispar


organism_name: Bacteroides intestinalis


organism_name: Candidatus Scatavimonas sp.


organism_name: Bacteroides uniformis


organism_name: Anaerotruncus massiliensis (ex Liu et al. 2021)


organism_name: Collinsella aerofaciens


organism_name: Akkermansia sp.


organism_name: Oscillospiraceae bacterium


organism_name: Escherichia coli


organism_name: Cloacibacillus evryensis


organism_name: Alistipes sp.


organism_name: Blautia caecimuris


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Streptococcus thermophilus


organism_name: Pyramidobacter piscolens


organism_name: Peptococcaceae bacterium


organism_name: Alistipes ihumii


organism_name: Parabacteroides distasonis


organism_name: Alistipes putredinis


organism_name: Candidatus Fimivicinus sp.


organism_name: Desulfovibrio fairfieldensis


organism_name: Adlercreutzia equolifaciens


organism_name: Alistipes onderdonkii


organism_name: Alistipes shahii


organism_name: Hominenteromicrobium sp.


organism_name: Candidatus Scybalosoma faecavium


organism_name: Eggerthellaceae bacterium


organism_name: Mediterraneibacter torques


organism_name: Ruthenibacterium sp.


organism_name: Anaerotruncus massiliensis (ex Liu et al. 2021)


organism_name: Eggerthella lenta


organism_name: Ellagibacter isourolithinifaciens


organism_name: Alistipes indistinctus


organism_name: Agathobacter rectalis


organism_name: Oscillospiraceae bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: Alistipes finegoldii


organism_name: Anaerotignum sp.


organism_name: Candidatus Fimisoma sp.


organism_name: Butyricicoccaceae bacterium


organism_name: Candidatus Fimivicinus sp.


organism_name: Bacteroidales bacterium


organism_name: Alistipes onderdonkii


organism_name: Faecalibacterium sp.


organism_name: Parabacteroides distasonis


organism_name: Candidatus Woodwardiibium sp.


organism_name: Ruminococcus sp.


organism_name: Bacteroides uniformis


organism_name: Desulfovibrio sp.


organism_name: Akkermansia muciniphila


organism_name: Dorea longicatena


organism_name: Lachnospiraceae bacterium


organism_name: Barnesiella intestinihominis


organism_name: Butyricimonas virosa


organism_name: Phocaeicola vulgatus


organism_name: Dialister invisus


organism_name: Oscillospiraceae bacterium


organism_name: Muribaculaceae bacterium


organism_name: Faecousia sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Christensenellales bacterium


organism_name: Collinsella bouchesdurhonensis


organism_name: Waltera sp.


organism_name: Prevotella sp.


organism_name: Alistipes putredinis


organism_name: Parasutterella excrementihominis


organism_name: Collinsella aerofaciens


organism_name: Alistipes onderdonkii


organism_name: Bilophila wadsworthia


organism_name: Anaerobutyricum hallii


organism_name: Escherichia coli


organism_name: Ruthenibacterium lactatiformans


organism_name: Collinsella sp.


organism_name: Alistipes ihumii


organism_name: Alistipes sp.


organism_name: Mediterraneibacter torques


organism_name: Agathobacter rectalis


organism_name: Anaerostipes hadrus


organism_name: Oscillospiraceae bacterium


organism_name: Akkermansia sp.


organism_name: Faecalibacterium sp.


organism_name: Gemmiger formicilis


organism_name: Eubacteriales bacterium


organism_name: Ruminococcus sp.


organism_name: Candidatus Ventricola sp.


organism_name: Barnesiella intestinihominis


organism_name: Eggerthella lenta


organism_name: Escherichia coli


organism_name: Parabacteroides distasonis


organism_name: Intestinimonas sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Phocaeicola vulgatus


organism_name: Alistipes sp.


organism_name: Candidatus Fimivicinus sp.


organism_name: Alistipes onderdonkii


organism_name: [Eubacterium] siraeum


organism_name: Bacteroides uniformis


organism_name: Roseburia faecis


organism_name: Bacteroides cellulosilyticus


organism_name: Candidatus Scatavimonas sp.


organism_name: Bilophila wadsworthia


organism_name: Streptococcus salivarius


organism_name: Phascolarctobacterium faecium


organism_name: Allofournierella sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Clostridia bacterium


organism_name: Faecalibacterium sp.


organism_name: Bacteroides ovatus


organism_name: Adlercreutzia sp.


organism_name: Barnesiella intestinihominis


organism_name: Parabacteroides distasonis


organism_name: Alistipes putredinis


organism_name: Enterocloster bolteae


organism_name: Ruthenibacterium sp.


organism_name: Clostridium sp.


organism_name: Akkermansia sp.


organism_name: Akkermansia muciniphila


organism_name: Oscillospiraceae bacterium


organism_name: Faecousia sp.


organism_name: Alistipes communis


organism_name: Alistipes finegoldii


organism_name: Coprococcus sp.


organism_name: Gemmiger qucibialis


organism_name: Candidatus Ventricola sp.


organism_name: Gemmiger formicilis


organism_name: Alistipes onderdonkii


organism_name: Candidatus Avimonas narfae


organism_name: Candidatus Alistipes pullicola


organism_name: Barnesiella intestinihominis


organism_name: Ruminococcus sp.


organism_name: Candidatus Scatocola faecipullorum


organism_name: Agathobaculum sp.


organism_name: Segatella copri


organism_name: Enterocloster sp.


organism_name: Akkermansia muciniphila


organism_name: Faecalibacterium sp.


organism_name: Eubacteriales bacterium


organism_name: Parabacteroides distasonis


organism_name: Bilophila wadsworthia


organism_name: Dysosmobacter welbionis


organism_name: Alistipes putredinis


organism_name: Alistipes finegoldii


organism_name: Parasutterella sp.


organism_name: Bacteroides cellulosilyticus


organism_name: Odoribacter splanchnicus


organism_name: Hominenteromicrobium sp.


organism_name: Eubacterium sp.


organism_name: Collinsella sp.


organism_name: Dialister sp.


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Candidatus Acutalibacter ornithocaccae


organism_name: Alistipes onderdonkii


organism_name: Anaerostipes hadrus


organism_name: Allocoprococcus comes


organism_name: Bifidobacterium longum


organism_name: Blautia sp.


organism_name: Megasphaera sp.


organism_name: Agathobacter rectalis


organism_name: Gemmiger sp.


organism_name: Mediterraneibacter torques


organism_name: Escherichia coli


organism_name: Blautia wexlerae


organism_name: Fusicatenibacter saccharivorans


organism_name: Phascolarctobacterium faecium


organism_name: Alistipes shahii


organism_name: Oscillospiraceae bacterium


organism_name: Parabacteroides distasonis


organism_name: Alistipes putredinis


organism_name: Sutterella wadsworthensis


organism_name: Alistipes finegoldii


organism_name: Gemmiger qucibialis


organism_name: Bacteroides intestinalis


organism_name: Faecousia sp.


organism_name: Collinsella aerofaciens


organism_name: Bacteroides uniformis


organism_name: Akkermansia muciniphila


organism_name: Ruthenibacterium lactatiformans


organism_name: Bacteroides fragilis


organism_name: Bilophila wadsworthia


organism_name: Phocaeicola vulgatus


organism_name: Bifidobacterium longum


organism_name: Bifidobacterium bifidum


organism_name: Candidatus Fimivicinus sp.


organism_name: Parasutterella excrementihominis


organism_name: Blautia caecimuris


organism_name: Enterocloster bolteae


organism_name: Parabacteroides merdae


organism_name: Blautia hansenii


organism_name: Bacteroides ovatus


organism_name: [Clostridium] leptum


organism_name: Veillonella parvula


organism_name: Mediterraneibacter gnavus


organism_name: Escherichia coli


organism_name: Mediterraneibacter torques


organism_name: Candidatus Scybalenecus sp.


organism_name: Alistipes finegoldii


organism_name: Evtepia gabavorous


organism_name: Dysosmobacter welbionis


organism_name: Blautia faecis


organism_name: Ruthenibacterium sp.


organism_name: Alistipes shahii


organism_name: Veillonella sp.


organism_name: Anaerostipes hadrus


organism_name: Alistipes putredinis


organism_name: Alistipes ihumii


organism_name: Hominenteromicrobium sp.


organism_name: Collinsella phocaeensis


organism_name: Akkermansia muciniphila


organism_name: Bilophila wadsworthia


organism_name: Ruthenibacterium lactatiformans


organism_name: Phocaeicola vulgatus


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Parasutterella excrementihominis


organism_name: Acidaminococcus intestini


organism_name: Phascolarctobacterium faecium


organism_name: Lawsonibacter sp.


organism_name: Dysosmobacter welbionis


organism_name: Flavonifractor plautii


organism_name: Parabacteroides distasonis


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes onderdonkii


organism_name: Alistipes sp.


organism_name: Bacteroides fragilis


organism_name: Escherichia coli


organism_name: Phascolarctobacterium succinatutens


organism_name: Eubacterium sp.


organism_name: Alistipes putredinis


organism_name: Alistipes shahii


organism_name: Barnesiella intestinihominis


organism_name: Duodenibacillus massiliensis


organism_name: Lachnospiraceae bacterium


organism_name: Segatella hominis


organism_name: Oscillospiraceae bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: [Eubacterium] siraeum


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Christensenellales bacterium


organism_name: Prevotella sp.


organism_name: Prevotellamassilia timonensis


organism_name: Phocaeicola vulgatus


organism_name: Gemmiger formicilis


organism_name: Bacteroides uniformis


organism_name: Alistipes onderdonkii


organism_name: Alistipes finegoldii


organism_name: Alistipes ihumii


organism_name: Bifidobacterium longum


organism_name: Alistipes putredinis


organism_name: Segatella sp.


organism_name: Bacteroides salyersiae


organism_name: Alphaproteobacteria bacterium


organism_name: Akkermansia muciniphila


organism_name: Haemophilus sp.


organism_name: Phocaeicola sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Ruminococcus sp.


organism_name: Akkermansia sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Christensenellales bacterium


organism_name: Bacteroides uniformis


organism_name: Segatella copri


organism_name: Prevotella sp.


organism_name: Alistipes inops


organism_name: Alistipes shahii


organism_name: Barnesiella intestinihominis


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes indistinctus


organism_name: Segatella sp.


organism_name: Dysosmobacter sp.


organism_name: Alistipes putredinis


organism_name: Victivallis lenta


organism_name: Lachnospiraceae bacterium


organism_name: Phascolarctobacterium faecium


organism_name: Alistipes finegoldii


organism_name: Ruminococcus sp.


organism_name: Candidatus Fimenecus sp.


organism_name: Bacteroides uniformis


organism_name: Faecalimonas sp.


organism_name: Phocaeicola vulgatus


organism_name: Escherichia coli


organism_name: Agathobacter rectalis


organism_name: Candidatus Scatocola faecipullorum


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes sp.


organism_name: Collinsella aerofaciens


organism_name: Parabacteroides johnsonii


organism_name: Akkermansia muciniphila


organism_name: Gemmiger qucibialis


organism_name: Alistipes ihumii


organism_name: Alistipes putredinis


organism_name: Alistipes shahii


organism_name: Ruminococcus sp.


organism_name: Bacteroides caccae


organism_name: Prevotella sp.


organism_name: Lachnospiraceae bacterium


organism_name: Alistipes finegoldii


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Parabacteroides merdae


organism_name: Phocaeicola vulgatus


organism_name: Phascolarctobacterium succinatutens


organism_name: Parabacteroides distasonis


organism_name: Faecalibacterium prausnitzii


organism_name: Roseburia inulinivorans


organism_name: [Bacteroides] pectinophilus


organism_name: Dysosmobacter sp.


organism_name: Candidatus Limisoma sp.


organism_name: Ruminococcus callidus


organism_name: Oscillospiraceae bacterium


organism_name: Escherichia coli


organism_name: Fusobacterium sp.


organism_name: Megamonas funiformis


organism_name: Agathobaculum sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Clostridium fessum


organism_name: Parabacteroides merdae


organism_name: Enterocloster sp.


organism_name: Bacteroides ovatus


organism_name: Ventrimonas sp.


organism_name: Faecalimonas sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Sutterella wadsworthensis


organism_name: Lachnospira sp.


organism_name: Mediterraneibacter gnavus


organism_name: Lachnospirales bacterium


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome

organism_name: Ruminococcus sp.


organism_name: Bacteroides eggerthii


organism_name: Alloprevotella sp.


organism_name: Parabacteroides distasonis


organism_name: Limosilactobacillus mucosae


organism_name: Sarcina ventriculi


organism_name: Pilosibacter sp.


organism_name: Alistipes onderdonkii


organism_name: Lawsonibacter sp.


organism_name: Bacteroides cellulosilyticus


organism_name: Bacteroides uniformis


organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Phocaeicola vulgatus


organism_name: Fusobacterium sp.


organism_name: Alistipes shahii


organism_name: Bacteroides ovatus


organism_name: Haemophilus parainfluenzae


organism_name: Clostridium fessum


organism_name: Ruminococcus sp.


organism_name: Parasutterella excrementihominis


organism_name: Phascolarctobacterium faecium


asm_submitter: Jiangsu University

group: archaea

organism_name: Halorubrum rarum

refseq_category: reference genome

relation_to_type_material: assembly from type material


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: Hospital Universitario Marques de Valdecilla

organism_name: Pseudomonas aeruginosa


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins


asm_submitter: Loyola University Chicago

assembly_level: Scaffold

excluded_from_refseq: annotation fails completeness check

organism_name: Klebsiella pneumoniae


organism_name: Halorubrum marinum


asm_submitter: Taiyuan Center for Disease Control and Prevention

organism_name: Salmonella enterica


asm_submitter: Inner Mongolia University

organism_name: Rhodococcus shunpengi


asm_submitter: University of Mosul

organism_name: Ligilactobacillus salivarius


organism_name: Rhodococcus mengyinensis


asm_submitter: National Yang Ming Chiao Tung University

organism_name: Escherichia coli


annotation_name: Annotation submitted by Universite Paris-Saclay

annotation_provider: Universite Paris-Saclay

asm_submitter: Universite Paris-Saclay

organism_name: Listeria monocytogenes


asm_submitter: China West Normal University

organism_name: Algibacter ulvanivorans


asm_submitter: Institute of Microbiology

organism_name: Mycoplasma sp. 4463


asm_submitter: Shanxi Agricultural University

organism_name: Christiangramia qingdaonensis


asm_submitter: National Research Center "Kurchatov Institute"


asm_submitter: Federal Research Center "Pushchino Scientific Center for Biological Research of the RAS"

organism_name: Tepidibacillus sp. LV47


asm_submitter: University of Rajshahi

infraspecific_name: strain=Hakim RU_LJ

organism_name: Bacillus subtilis


asm_submitter: Nantong University

organism_name: Microbacterium sp. S1037


organism_name: Thermoanaerobacter thermocopriae


asm_submitter: Chung-Ang university

organism_name: Staphylococcus sp. Ze6


asm_submitter: Chinese Academy of Agricultural Sciences Institute of Agricultural Resources and Regional Planning

organism_name: Advenella sp. RU8


asm_submitter: Ocean University of China

organism_name: Corallibacter sp.


organism_name: Staphylococcus sp. Ze7


organism_name: Ponticoccus sp. (in: a-proteobacteria)


organism_name: Roseobacteraceae bacterium


organism_name: Desulfosediminicola sp.


organism_name: Flagellimonas sp.


organism_name: Halobacteriovorax sp.


organism_name: Winogradskyella sp.


excluded_from_refseq: unverified source organism; annotation fails MAG completeness check; derived from metagenome

organism_name: Rhodanobacter sp.


organism_name: Flavobacteriaceae bacterium


excluded_from_refseq: derived from metagenome

organism_name: Hwangdonia sp.


organism_name: Allomicrovenator sp.


asm_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

organism_name: Roseburia faecis


organism_name: Alistipes putredinis


organism_name: Escherichia coli


organism_name: Bacteroides eggerthii


organism_name: Barnesiella intestinihominis


organism_name: Oscillospiraceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides stercoris


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Parabacteroides sp.


organism_name: Lachnospiraceae bacterium


organism_name: Fusicatenibacter saccharivorans


organism_name: Bifidobacterium adolescentis


organism_name: Roseburia intestinalis


excluded_from_refseq: contaminated; derived from metagenome


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Parasutterella excrementihominis


organism_name: Muribaculaceae bacterium


organism_name: Bacteroides uniformis


organism_name: Lawsonibacter sp.


organism_name: Phocaeicola dorei


organism_name: Flavonifractor plautii


organism_name: Parabacteroides distasonis


organism_name: Bacteroides sp.


organism_name: Gemmiger qucibialis


organism_name: Oscillospiraceae bacterium


organism_name: Agathobaculum sp.


organism_name: Phocaeicola coprophilus


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: [Lactobacillus] rogosae


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Alistipes shahii


organism_name: Bacteroides ilei


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Blautia sp.


organism_name: Veillonella atypica


organism_name: Acutalibacteraceae bacterium


organism_name: Segatella sp.


organism_name: Thermophilibacter provencensis


organism_name: Mediterraneibacter faecis


organism_name: Escherichia coli


organism_name: Candidatus Alistipes avistercoris


organism_name: Faecalibacterium sp.


organism_name: Desulfovibrio piger


organism_name: Gemmiger formicilis


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Oscillospiraceae bacterium


organism_name: Sutterella wadsworthensis


organism_name: Phocaeicola dorei


organism_name: Phocaeicola sp.


organism_name: Haemophilus parainfluenzae


organism_name: Bacteroides faecis


organism_name: Phascolarctobacterium faecium


organism_name: Enorma sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Candidatus Fimivicinus sp.


organism_name: Alistipes putredinis


organism_name: Akkermansia muciniphila


organism_name: Waltera sp.


organism_name: Bifidobacterium longum


organism_name: Escherichia coli


organism_name: [Eubacterium] siraeum


organism_name: Dysosmobacter sp.


organism_name: [Clostridium] symbiosum


organism_name: Veillonella parvula


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes onderdonkii


organism_name: Parasutterella excrementihominis


organism_name: Mailhella sp.


organism_name: Mediterraneibacter torques


organism_name: Candidatus Alistipes avistercoris


organism_name: Parabacteroides distasonis


organism_name: Collinsella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes putredinis


organism_name: Pilosibacter sp.


organism_name: Turicimonas muris


organism_name: Alistipes communis


organism_name: Bacteroides ovatus


organism_name: Clostridium fessum


organism_name: Akkermansia muciniphila


organism_name: Alistipes dispar


organism_name: Anaerotignaceae bacterium


organism_name: Bifidobacterium adolescentis


organism_name: Candidatus Fimenecus sp.


organism_name: Dialister invisus


organism_name: Barnesiella intestinihominis


organism_name: Candidatus Aphodousia sp.


excluded_from_refseq: derived from metagenome; genome length too small; genus undefined

organism_name: [Eubacterium] siraeum


organism_name: Victivallis sp.


organism_name: Alistipes ihumii


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Scatosoma sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Alistipes shahii


organism_name: Bacteroides uniformis


organism_name: Phocaeicola vulgatus


organism_name: Christensenellales bacterium


organism_name: Alistipes sp.


organism_name: Segatella copri


organism_name: Sutterella wadsworthensis


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Candidatus Fimenecus sp.


organism_name: Clostridia bacterium


organism_name: Mediterraneibacter torques


organism_name: Prevotella sp.


organism_name: Agathobacter rectalis


organism_name: Bacteroides ovatus


organism_name: Faecalibacterium prausnitzii


organism_name: Phocaeicola dorei


organism_name: Gemmiger formicilis


organism_name: Parabacteroides distasonis


organism_name: Collinsella aerofaciens


organism_name: Bifidobacterium adolescentis


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Hominenteromicrobium sp.


organism_name: Akkermansia muciniphila


organism_name: Eubacteriales bacterium


organism_name: Sutterella wadsworthensis


organism_name: Alistipes shahii


organism_name: Christensenellales bacterium


organism_name: Angelakisella sp.


organism_name: Slackia isoflavoniconvertens


organism_name: Alistipes putredinis


organism_name: Oscillospiraceae bacterium


organism_name: Phascolarctobacterium succinatutens


organism_name: Faecousia sp.


organism_name: Prevotella sp.


organism_name: Segatella sp.


organism_name: Parasutterella sp.


organism_name: Muribaculaceae bacterium


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes communis


organism_name: Parabacteroides distasonis


organism_name: Alistipes ihumii


organism_name: Candidatus Merdousia sp.


organism_name: Alistipes onderdonkii


organism_name: Candidatus Fimenecus sp.


organism_name: Akkermansia sp.


organism_name: Bilophila sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Dysosmobacter welbionis


organism_name: Alphaproteobacteria bacterium


organism_name: Phocaeicola vulgatus


organism_name: Collinsella sp.


organism_name: Gemmiger formicilis


organism_name: Mediterraneibacter torques


organism_name: Lachnospiraceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: Bacteroides caccae


organism_name: Hungatella hathewayi


organism_name: Alistipes putredinis


organism_name: Bifidobacterium dentium


organism_name: Clostridium fessum


organism_name: Faecalibacterium prausnitzii


organism_name: Coprococcus sp.


organism_name: Faecalibacterium sp.


organism_name: Bilophila wadsworthia


organism_name: Parabacteroides merdae


organism_name: Agathobacter rectalis


organism_name: Alistipes onderdonkii


organism_name: Gemmiger qucibialis


organism_name: Parabacteroides distasonis


organism_name: Bacteroides clarus


organism_name: Sutterella wadsworthensis


organism_name: [Lactobacillus] rogosae


organism_name: Segatella copri


organism_name: Akkermansia sp.


organism_name: [Eubacterium] siraeum


organism_name: Alistipes putredinis


organism_name: Prevotella sp.


organism_name: Candidatus Fimenecus sp.


organism_name: Bacteroides uniformis


organism_name: Sutterella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Akkermansia muciniphila


organism_name: Candidatus Limivicinus sp.


organism_name: Alistipes onderdonkii


organism_name: Bacteroides cellulosilyticus


organism_name: Alistipes finegoldii


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Ruminococcus sp.


organism_name: Waltera sp.


organism_name: Agathobacter rectalis


organism_name: Bacteroides stercoris


organism_name: Parabacteroides distasonis


organism_name: Alistipes putredinis


organism_name: Dysosmobacter sp.


organism_name: Phocaeicola dorei


organism_name: Barnesiella intestinihominis


organism_name: Christensenellales bacterium


organism_name: Angelakisella sp.


organism_name: Coprococcus sp.


organism_name: Alistipes sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Phocaeicola sp.


organism_name: Phocaeicola plebeius


organism_name: Bacteroides uniformis


organism_name: Citrobacter sp.


organism_name: Klebsiella pneumoniae


organism_name: Akkermansia sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Bifidobacterium catenulatum


organism_name: Bacteroides fragilis


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Fimenecus sp.


organism_name: Parabacteroides distasonis


organism_name: Gemmiger formicilis


organism_name: Gemmiger qucibialis


organism_name: Collinsella sp.


organism_name: Hominenteromicrobium sp.


organism_name: Phocaeicola vulgatus


organism_name: Negativibacillus sp.


organism_name: Bacteroides stercoris


organism_name: Dysosmobacter welbionis


organism_name: Evtepia gabavorous


organism_name: Blautia faecis


organism_name: Neglectibacter timonensis


organism_name: Lachnospiraceae bacterium


organism_name: Anaerobutyricum hallii


organism_name: Anaerostipes hadrus


organism_name: Alistipes shahii


organism_name: Roseburia intestinalis


organism_name: Klebsiella pneumoniae


organism_name: Lachnospira sp.


organism_name: Alistipes putredinis


organism_name: Faecalibacillus intestinalis


organism_name: Dorea longicatena


organism_name: Fusicatenibacter saccharivorans


organism_name: Blautia obeum


organism_name: Roseburia faecis


organism_name: Gemmiger formicilis


organism_name: Agathobacter rectalis


organism_name: Mediterraneibacter torques


organism_name: Blautia sp.


organism_name: Mitsuokella multacida


organism_name: Parabacteroides merdae


organism_name: Candidatus Fimivicinus sp.


organism_name: Phascolarctobacterium faecium


organism_name: Bacteroides intestinalis


organism_name: Blautia hydrogenotrophica


organism_name: Barnesiella intestinihominis


organism_name: Allocoprococcus comes


organism_name: Bacteroides ovatus


organism_name: Candidatus Fimisoma sp.


organism_name: Candidatus Scatavimonas sp.


organism_name: Candidatus Limiplasma pullistercoris


organism_name: Odoribacter splanchnicus


asm_submitter: Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences

assembly_level: Complete Genome

organism_name: Gluconobacter cerinus


organism_name: Parabacteroides goldsteinii


asm_submitter: Zhengzhou University

organism_name: Citrobacter braakii


organism_name: Anaerotruncus massiliensis (ex Liu et al. 2021)


organism_name: Enterobacter hormaechei


organism_name: Alistipes onderdonkii


organism_name: Oscillospiraceae bacterium


organism_name: Blautia obeum


organism_name: Allofournierella sp.


organism_name: [Clostridium] innocuum


organism_name: Eggerthella lenta


organism_name: [Eubacterium] siraeum


organism_name: Frisingicoccus sp.


organism_name: Alistipes putredinis


organism_name: Dorea sp.


organism_name: Bacteroides stercoris


organism_name: Akkermansia sp.


organism_name: Lachnospira eligens


organism_name: Ruminococcus sp.


organism_name: Escherichia coli


organism_name: Christensenellales bacterium


organism_name: Mediterraneibacter torques


organism_name: Limosilactobacillus fermentum


organism_name: Oscillospiraceae bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: Neglectibacter timonensis


organism_name: Negativibacillus sp.


organism_name: Ruminococcus bromii


organism_name: Gemmiger qucibialis


organism_name: [Clostridium] leptum


organism_name: Anaerobutyricum soehngenii


organism_name: Hominenteromicrobium sp.


organism_name: Candidatus Fimivicinus sp.


organism_name: Agathobacter rectalis


organism_name: Phocaeicola dorei


organism_name: Lachnospiraceae bacterium


organism_name: Intestinibacter bartlettii


organism_name: Parasutterella sp.


organism_name: Dysosmobacter welbionis


organism_name: Oliverpabstia sp.


organism_name: Alistipes onderdonkii


organism_name: Parabacteroides distasonis


organism_name: Collinsella aerofaciens


organism_name: Parabacteroides merdae


organism_name: Acidaminococcus intestini


organism_name: Blautia wexlerae


organism_name: Faecalibacterium sp.


organism_name: Bifidobacterium longum


organism_name: Anaerostipes hadrus


organism_name: Alistipes sp.


organism_name: Roseburia intestinalis


organism_name: Clostridia bacterium


organism_name: Intestinimonas butyriciproducens


organism_name: Oscillospiraceae bacterium


organism_name: [Eubacterium] siraeum


organism_name: Christensenellales bacterium


organism_name: Methanobrevibacter smithii


organism_name: Candidatus Limiplasma pullistercoris


organism_name: Lachnospiraceae bacterium


organism_name: Blautia obeum


organism_name: Frisingicoccus sp.


organism_name: Roseburia hominis


organism_name: Anaerobutyricum soehngenii


organism_name: Candidatus Ventricola intestinavium


organism_name: Bacteroides uniformis


organism_name: Candidatus Eubacterium faecipullorum


organism_name: Bacteroides ovatus


organism_name: Agathobacter rectalis


organism_name: Parabacteroides distasonis


organism_name: Candidatus Scybalosoma faecavium


organism_name: Blautia wexlerae


organism_name: Akkermansia muciniphila


organism_name: Ruminococcus sp.


organism_name: Butyrivibrio sp.


organism_name: Collinsella aerofaciens


excluded_from_refseq: derived from metagenome; genome length too large

organism_name: Neglectibacter timonensis


organism_name: Phocaeicola vulgatus


organism_name: Acutalibacteraceae bacterium


organism_name: Christensenellales bacterium


organism_name: [Ruminococcus] lactaris


organism_name: Roseburia inulinivorans


organism_name: Candidatus Acutalibacter ornithocaccae


organism_name: Odoribacter splanchnicus


organism_name: [Eubacterium] siraeum


organism_name: Candidatus Caccousia sp.


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Fimisoma sp.


organism_name: Lachnospiraceae bacterium


organism_name: Phascolarctobacterium faecium


organism_name: Candidatus Fimivicinus sp.


organism_name: Bacilli bacterium


organism_name: Hominenteromicrobium sp.


organism_name: Longibaculum muris


organism_name: Faecousia sp.


organism_name: Pseudoruminococcus massiliensis


organism_name: Alistipes putredinis


organism_name: Dorea sp.


organism_name: Coprococcus sp.


organism_name: Alistipes finegoldii


organism_name: Bilophila wadsworthia


organism_name: Waltera sp.


organism_name: Merdibacter sp.


organism_name: Blautia wexlerae


organism_name: Ventrimonas sp.


organism_name: Streptococcus thermophilus


organism_name: Dysosmobacter welbionis


organism_name: Candidatus Evtepia excrementipullorum


organism_name: Alistipes sp.


organism_name: Christensenellales bacterium


organism_name: Alistipes ihumii


organism_name: Frisingicoccus sp.


organism_name: Mediterraneibacter torques


organism_name: Allocoprococcus comes


organism_name: Candidatus Merdousia sp.


organism_name: Barnesiella intestinihominis


organism_name: Agathobacter rectalis


organism_name: Blautia obeum


organism_name: Parabacteroides distasonis


organism_name: Gemmiger qucibialis


organism_name: Longicatena caecimuris


organism_name: Oscillospiraceae bacterium


organism_name: Xylanibacter rarus


organism_name: Bacteroides sp.


organism_name: [Clostridium] scindens


organism_name: Klebsiella pneumoniae


organism_name: Phocaeicola massiliensis


organism_name: Anaerostipes hadrus


organism_name: Dorea formicigenerans


organism_name: Roseburia faecis


organism_name: Monoglobus pectinilyticus


organism_name: Negativibacillus massiliensis


organism_name: Blautia faecicola


organism_name: Acidaminococcus intestini


organism_name: [Eubacterium] siraeum


organism_name: Parasutterella excrementihominis


organism_name: Lachnospira sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Holdemanella biformis


organism_name: Dorea longicatena


organism_name: Waltera sp.


organism_name: Hominenteromicrobium sp.


organism_name: Oscillospiraceae bacterium


organism_name: Coprococcus sp.


organism_name: Parabacteroides merdae


organism_name: Agathobacter rectalis


organism_name: Faecalibacterium prausnitzii


organism_name: Mediterraneibacter torques


organism_name: Streptococcus salivarius


organism_name: Blautia wexlerae


organism_name: Alistipes putredinis


organism_name: Gemmiger qucibialis


organism_name: Evtepia gabavorous


organism_name: Anaerobutyricum soehngenii


organism_name: Candidatus Alistipes avistercoris


organism_name: Ruminococcus sp.


organism_name: Akkermansia muciniphila


organism_name: Candidatus Limivicinus sp.


organism_name: Alistipes sp.


organism_name: Angelakisella sp.


organism_name: Christensenellales bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Waltera sp.


organism_name: Dysosmobacter sp.


organism_name: Akkermansia sp.


organism_name: Phascolarctobacterium faecium


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Bilophila wadsworthia


organism_name: Bacteroides stercoris


organism_name: Phocaeicola vulgatus


organism_name: Escherichia coli


organism_name: Mediterraneibacter torques


organism_name: Flavonifractor plautii


organism_name: Candidatus Fimivicinus sp.


organism_name: Acidaminococcus intestini


organism_name: Klebsiella pneumoniae


organism_name: Alistipes putredinis


organism_name: Parabacteroides distasonis


organism_name: Paraprevotella xylaniphila


organism_name: Alistipes dispar


organism_name: Phocaeicola dorei


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Veillonellaceae bacterium


organism_name: Alistipes onderdonkii


organism_name: Ruminococcus bromii


organism_name: Oscillospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Gemmiger qucibialis


organism_name: Candidatus Stercorousia sp.


organism_name: Ruminococcus sp.


organism_name: Alistipes finegoldii


organism_name: Candidatus Fimivicinus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Candidatus Aphodocola sp.


organism_name: Parabacteroides merdae


organism_name: Paraprevotella clara


organism_name: Lachnospira eligens


organism_name: Christensenellales bacterium


organism_name: Akkermansia muciniphila


organism_name: Duodenibacillus sp.


organism_name: Phocaeicola dorei


organism_name: Candidatus Merdousia sp.


organism_name: Eubacteriales bacterium


organism_name: Candidatus Faeciplasma sp.


organism_name: Bacilli bacterium


organism_name: Ruminiclostridium sp.


organism_name: Parabacteroides distasonis


organism_name: Dysosmobacter sp.


organism_name: Candidatus Merdicola sp.


organism_name: Candidatus Coproplasma sp.


organism_name: Faecalibacterium sp.


organism_name: Alistipes putredinis


organism_name: Sutterella wadsworthensis


organism_name: Phocaeicola vulgatus


organism_name: Eubacterium sp.


organism_name: Bacteroides uniformis


organism_name: Ruminococcus sp.


organism_name: Alistipes shahii


organism_name: Akkermansia sp.


organism_name: Phascolarctobacterium faecium


organism_name: Haemophilus sp.


organism_name: Alistipes finegoldii


organism_name: Lachnospiraceae bacterium


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Barnesiella sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Akkermansia muciniphila


organism_name: Oscillospiraceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Eubacteriales bacterium


organism_name: Lachnospira eligens


organism_name: Dysosmobacter sp.


organism_name: Candidatus Merdicola sp.


organism_name: Alistipes putredinis


organism_name: Candidatus Fimenecus sp.


organism_name: Klebsiella pneumoniae


asm_name: Scm

asm_submitter: Jiangsu Ocean University

infraspecific_name: strain=Scm

organism_name: Bacillus velezensis


organism_name: Agathobacter rectalis


organism_name: Phascolarctobacterium sp.


organism_name: Holdemanella porci


organism_name: Phocaeicola dorei


organism_name: Candidatus Alistipes avistercoris


organism_name: Alistipes onderdonkii


organism_name: Roseburia inulinivorans


organism_name: Akkermansia muciniphila


organism_name: Acutalibacteraceae bacterium


organism_name: [Eubacterium] siraeum


organism_name: Oscillospiraceae bacterium


organism_name: Thomasclavelia ramosa


organism_name: Bacteroides uniformis


organism_name: Ruminococcus sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Faecousia sp.


organism_name: Collinsella sp.


organism_name: Gemmiger qucibialis


organism_name: Roseburia hominis


organism_name: Lachnospira eligens


organism_name: Anaerostipes hadrus


organism_name: Gemmiger formicilis


organism_name: Parabacteroides merdae


organism_name: Phascolarctobacterium faecium


organism_name: Sutterella wadsworthensis


organism_name: Alistipes shahii


organism_name: Agathobacter rectalis


organism_name: Prevotella sp.


organism_name: Barnesiella intestinihominis


organism_name: Alistipes putredinis


organism_name: Eubacteriales bacterium


organism_name: Eubacterium sp.


organism_name: Lachnospiraceae bacterium


organism_name: Parabacteroides distasonis


organism_name: Oscillospiraceae bacterium


organism_name: Butyribacter sp.


organism_name: Segatella copri


organism_name: Acutalibacteraceae bacterium


organism_name: Lachnospira sp.


organism_name: Dysosmobacter sp.


excluded_from_refseq: contaminated; annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Lachnospira eligens


organism_name: [Ruminococcus] lactaris


organism_name: Christensenellales bacterium


organism_name: Bacteroides xylanisolvens


organism_name: Faecalibacterium sp.


organism_name: Alistipes sp.


organism_name: Akkermansia sp.


organism_name: [Eubacterium] siraeum


organism_name: Gemmiger qucibialis


organism_name: Alistipes finegoldii


organism_name: Ruminococcus sp.


organism_name: Lachnospiraceae bacterium


organism_name: Longicatena caecimuris


organism_name: Bacteroides caccae


organism_name: Barnesiella intestinihominis


organism_name: Oscillospiraceae bacterium


organism_name: Odoribacter splanchnicus


organism_name: Acutalibacteraceae bacterium


organism_name: Clostridia bacterium


organism_name: Blautia obeum


organism_name: Eubacteriales bacterium


organism_name: Bacteroides uniformis


organism_name: Allofournierella sp.


organism_name: Akkermansia sp.


organism_name: Staphylococcus sp.


organism_name: Escherichia coli


organism_name: Faecalitalea cylindroides


organism_name: Alistipes ihumii


organism_name: Parabacteroides merdae


organism_name: Ruminococcus callidus


organism_name: Lachnospira eligens


organism_name: Alistipes putredinis


organism_name: Faecousia sp.


organism_name: Christensenellales bacterium


organism_name: Parabacteroides distasonis


organism_name: Holdemanella biformis


organism_name: Eubacterium sp.


organism_name: Oscillospiraceae bacterium


organism_name: Ruminiclostridium sp.


organism_name: Lachnospiraceae bacterium


organism_name: Clostridia bacterium


organism_name: Akkermansia muciniphila


organism_name: Alistipes shahii


organism_name: Bacteroides thetaiotaomicron


organism_name: Bacteroides caccae


organism_name: Ruminococcus sp.


organism_name: Roseburia intestinalis


organism_name: Ruthenibacterium lactatiformans


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides sp.


organism_name: Gemmiger qucibialis


organism_name: Escherichia coli


organism_name: Dysosmobacter sp.


organism_name: Faecalibacterium sp.


organism_name: Negativibacillus sp.


organism_name: Parabacteroides distasonis


organism_name: Gemmiger formicilis


organism_name: Phascolarctobacterium faecium


organism_name: Eshraghiella crossota


organism_name: Christensenellales bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Barnesiella intestinihominis


organism_name: Angelakisella sp.


organism_name: Waltera sp.


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Faeciplasma gallinarum


asm_submitter: University of Chinese Academy of Sciences

infraspecific_name: strain=SCSIO 43805

organism_name: Mycolicibacterium sp. SCSIO 43805


asm_submitter: Hubei University of Technology

organism_name: Stutzerimonas kunmingensis


asm_submitter: ocean university of china

organism_name: Bacteroides xylanisolvens


organism_name: Odoribacter splanchnicus


organism_name: Ruminococcus sp.


organism_name: [Lactobacillus] rogosae


organism_name: Alistipes putredinis


organism_name: Parabacteroides distasonis


organism_name: Phocaeicola vulgatus


organism_name: Bifidobacterium longum


organism_name: Agathobacter rectalis


organism_name: Porphyromonas sp.


organism_name: Candidatus Merdicola sp.


organism_name: Segatella copri


organism_name: Prevotellamassilia timonensis


organism_name: Bacteroides thetaiotaomicron


organism_name: Faecalibacterium prausnitzii


organism_name: Flavonifractor plautii


organism_name: Prevotellaceae bacterium


organism_name: Escherichia coli


organism_name: Eubacterium sp.


organism_name: Roseburia faecis


organism_name: Faecalibacterium sp.


organism_name: Bacteroides sp.


organism_name: Clostridium fessum


organism_name: Enterocloster sp.


organism_name: Sutterella wadsworthensis


organism_name: Candidatus Scatocola faecipullorum


organism_name: Phocaeicola dorei


organism_name: Parabacteroides distasonis


organism_name: Dialister invisus


organism_name: [Lactobacillus] rogosae


organism_name: Bacteroides thetaiotaomicron


organism_name: Phascolarctobacterium faecium


organism_name: Faecalibacterium prausnitzii


organism_name: Coprobacter fastidiosus


organism_name: Mediterraneibacter torques


organism_name: Bacteroides cellulosilyticus


organism_name: Akkermansia sp.


organism_name: Alistipes onderdonkii


organism_name: Alistipes finegoldii


organism_name: Escherichia coli


organism_name: Prevotella bivia


organism_name: Candidatus Fimivicinus sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: [Eubacterium] siraeum


organism_name: Alistipes shahii


organism_name: Alistipes putredinis


organism_name: Oscillospiraceae bacterium


organism_name: Parasutterella sp.


organism_name: Parabacteroides distasonis


organism_name: Ruminococcus sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Blautia wexlerae


organism_name: Candidatus Fimenecus sp.


organism_name: Akkermansia sp.


organism_name: Lachnospiraceae bacterium


organism_name: Bacteroides faecis


organism_name: Agathobacter rectalis


organism_name: Phocaeicola vulgatus


organism_name: Candidatus Alistipes avistercoris


organism_name: Christensenellales bacterium


organism_name: Akkermansia muciniphila


organism_name: Alistipes sp.


organism_name: Alistipes putredinis


organism_name: Escherichia coli


organism_name: Barnesiella intestinihominis


organism_name: Oscillospiraceae bacterium


organism_name: Muribaculaceae bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Dysosmobacter sp.


organism_name: Candidatus Fimenecus sp.


asm_submitter: Medical University of Gdansk

organism_name: Dickeya solani


asm_submitter: Hubei University Of Technology

infraspecific_name: strain=TB

organism_name: Thauera butanivorans


asm_submitter: Tokyo Medical and Dental University

organism_name: Brucella intermedia


organism_name: Klebsiella pneumoniae


organism_name: Odoribacter laneus


organism_name: Alistipes shahii


organism_name: Phocaeicola vulgatus


organism_name: Faecalibacterium prausnitzii


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Candidatus Aphodousia faecalis


organism_name: Alistipes finegoldii


organism_name: Phascolarctobacterium faecium


organism_name: Oscillospiraceae bacterium


organism_name: Agathobacter rectalis


organism_name: Collinsella tanakaei


organism_name: Barnesiella intestinihominis


organism_name: Alistipes sp.


organism_name: Christensenellales bacterium


organism_name: Akkermansia sp.


organism_name: Alistipes communis


organism_name: [Eubacterium] siraeum


organism_name: Akkermansia muciniphila


organism_name: Alistipes putredinis


organism_name: Bacilli bacterium


organism_name: Alistipes shahii


organism_name: Lachnospira eligens


organism_name: Ruminococcus sp.


organism_name: Escherichia coli


organism_name: Streptococcus sp.


organism_name: Gemmiger qucibialis


organism_name: Oscillospiraceae bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Candidatus Fimivicinus sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Phocaeicola dorei


organism_name: Candidatus Fimadaptatus sp.


asm_submitter: University of Rochester Medical Center

organism_name: Kingella kingae


asm_submitter: National Yang Ming Chiao Tung University

organism_name: Klebsiella pneumoniae


asm_submitter: Erciyes University

organism_name: Levilactobacillus brevis


organism_name: Lachnospiraceae bacterium


organism_name: Fusicatenibacter sp.


organism_name: Intestinimonas sp.


organism_name: Alistipes putredinis


organism_name: Parabacteroides distasonis


organism_name: Alistipes communis


organism_name: Alistipes sp.


organism_name: Alistipes finegoldii


organism_name: Akkermansia muciniphila


organism_name: Ruminococcus sp.


organism_name: Alistipes onderdonkii


organism_name: Candidatus Limiplasma merdipullorum


organism_name: Anaerostipes hadrus


organism_name: Collinsella aerofaciens


organism_name: Candidatus Limivicinus sp.


organism_name: Barnesiella intestinihominis


organism_name: Candidatus Scatomorpha merdavium


organism_name: Bacteroides uniformis


organism_name: Christensenellales bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Paraprevotella clara


organism_name: Parabacteroides distasonis


organism_name: Parasutterella sp.


organism_name: Alistipes putredinis


organism_name: [Eubacterium] siraeum


organism_name: Flavonifractor plautii


organism_name: Acutalibacteraceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes onderdonkii


organism_name: Ruminococcus sp.


organism_name: Candidatus Aphodousia sp.


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Roseburia faecis


organism_name: Bifidobacterium adolescentis


organism_name: Acidaminococcus intestini


organism_name: Phocaeicola sp.


organism_name: Bacteroides cellulosilyticus


organism_name: Bacteroides uniformis


asm_submitter: Municipal Hospital Affiliated to Taizhou University

infraspecific_name: strain=strain K1134

organism_name: Klebsiella pasteurii


organism_name: Butyricimonas paravirosa


organism_name: Bilophila wadsworthia


asm_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry

assembly_level: Chromosome

organism_name: Vibrio chaetopteri


asm_submitter: Bhabha Atomic Research Center

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Enterobacter cloacae subsp. cloacae


organism_name: Faecalibacterium sp.


excluded_from_refseq: derived from metagenome

organism_name: Parasutterella sp.


organism_name: Eisenbergiella porci


organism_name: [Clostridium] symbiosum


organism_name: Odoribacter sp.


organism_name: Akkermansia sp.


organism_name: Dysosmobacter welbionis


organism_name: [Clostridium] innocuum


organism_name: Alistipes onderdonkii


organism_name: Candidatus Fimivicinus sp.


organism_name: Alistipes putredinis


organism_name: Parabacteroides johnsonii


organism_name: Anaeromassilibacillus sp.


organism_name: Mediterraneibacter gnavus


organism_name: Ventrimonas sp.


organism_name: Phascolarctobacterium faecium


organism_name: Flavonifractor plautii


organism_name: Blautia caecimuris


organism_name: Parabacteroides distasonis


organism_name: Desulfovibrio fairfieldensis


organism_name: Agathobacter rectalis


organism_name: Phocaeicola vulgatus


organism_name: Eggerthella lenta


organism_name: Roseburia faecis


organism_name: Adlercreutzia sp.


organism_name: Escherichia coli


organism_name: Alistipes onderdonkii


organism_name: Gemmiger formicilis


organism_name: Alistipes finegoldii


organism_name: Bifidobacterium longum


organism_name: Collinsella intestinalis


organism_name: Mediterraneibacter torques


organism_name: Oscillospiraceae bacterium


organism_name: Akkermansia muciniphila


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Alistipes putredinis


organism_name: Bacteroides stercoris


organism_name: Parabacteroides merdae


organism_name: Phascolarctobacterium faecium


organism_name: Phocaeicola sp.


organism_name: Barnesiella intestinihominis


organism_name: Muribaculaceae bacterium


organism_name: Dialister invisus


asm_submitter: University of Southern California

organism_name: Pseudoalteromonas sp. US3C1004


asm_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

organism_name: Dysosmobacter sp.


organism_name: Bacteroides ovatus


organism_name: Pseudoalteromonas sp. US3C1013


asm_submitter: Nanjing Agricultural University

excluded_from_refseq: contaminated

organism_name: Stutzerimonas degradans


organism_name: Collinsella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Acidaminococcus intestini


organism_name: Escherichia coli


organism_name: [Eubacterium] siraeum


organism_name: Roseburia faecis


organism_name: Alistipes onderdonkii


organism_name: Bilophila wadsworthia


organism_name: Bifidobacterium longum


organism_name: Parasutterella sp.


organism_name: Lachnospiraceae bacterium


organism_name: Alistipes finegoldii


organism_name: [Lactobacillus] rogosae


organism_name: Faecousia sp.


organism_name: Ruminococcus callidus


organism_name: Gemmiger qucibialis


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Ruminococcus sp.


organism_name: Eubacterium sp.


organism_name: Lachnospira eligens


asm_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)

infraspecific_name: strain=GBBC 3622

organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens


organism_name: Akkermansia sp.


asm_submitter: Jiangxi Normal University

organism_name: Exiguobacterium mexicanum


organism_name: Escherichia coli


organism_name: Candidatus Scatosoma sp.


organism_name: Dialister invisus


organism_name: Candidatus Fimivicinus sp.


organism_name: Hominenteromicrobium sp.


organism_name: Candidatus Scybalosoma faecavium


organism_name: Flavonifractor plautii


organism_name: Mediterraneibacter glycyrrhizinilyticus


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Mediterraneibacter gnavus


organism_name: Lachnospiraceae bacterium


organism_name: Eggerthella lenta


organism_name: Blautia caecimuris


organism_name: Mediterraneibacter torques


organism_name: Blautia faecis


organism_name: Anaerotignum sp.


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Oliverpabstia sp.


organism_name: Collinsella sp.


organism_name: [Clostridium] scindens


organism_name: Blautia argi


organism_name: Phocaeicola plebeius


organism_name: Thomasclavelia ramosa


organism_name: Oscillospiraceae bacterium


organism_name: Anaerostipes hadrus


organism_name: Blautia sp.


organism_name: Parabacteroides merdae


organism_name: Alistipes putredinis


organism_name: Fusicatenibacter saccharivorans


organism_name: Faecalibacterium sp.


organism_name: Enterocloster sp.


organism_name: Fusicatenibacter sp.


organism_name: Anaerobutyricum soehngenii


organism_name: Clostridia bacterium


organism_name: Blautia faecis


organism_name: Blautia stercoris


organism_name: Lachnospiraceae bacterium


organism_name: Bacteroides uniformis


organism_name: Mediterraneibacter torques


organism_name: Clostridium sp.


organism_name: [Eubacterium] siraeum


organism_name: Dialister invisus


organism_name: Candidatus Fimenecus sp.


organism_name: Escherichia coli


organism_name: Parabacteroides distasonis


organism_name: Coprobacter fastidiosus


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Butyricimonas sp.


organism_name: Paraprevotella clara


organism_name: Alistipes putredinis


organism_name: Faecalibacterium prausnitzii


organism_name: Akkermansia muciniphila


organism_name: Ruthenibacterium lactatiformans


organism_name: Alistipes onderdonkii


organism_name: Bilophila wadsworthia


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Parasutterella sp.


organism_name: Bacteroides stercoris


organism_name: Flavonifractor plautii


organism_name: Agathobacter rectalis


organism_name: Alistipes shahii


organism_name: Phocaeicola vulgatus


organism_name: Faecalibacterium sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Dysosmobacter welbionis


organism_name: Dysosmobacter sp.


organism_name: Ruminococcus sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Oscillospiraceae bacterium


organism_name: Alistipes putredinis


organism_name: Sutterella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Bacteroides faecis


organism_name: Roseburia intestinalis


organism_name: Alistipes finegoldii


organism_name: Phocaeicola dorei


organism_name: Faecalibacillus intestinalis


organism_name: Holdemanella porci


organism_name: Escherichia coli


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Phascolarctobacterium faecium


organism_name: Gemmiger sp.


organism_name: Parabacteroides distasonis


organism_name: Blautia wexlerae


organism_name: Flavonifractor plautii


organism_name: Blautia sp.


organism_name: Candidatus Fimivicinus sp.


organism_name: Lacrimispora saccharolytica


organism_name: Oliverpabstia sp.


organism_name: Bifidobacterium adolescentis


organism_name: Phocaeicola vulgatus


organism_name: Tannerellaceae bacterium


organism_name: Collinsella sp.


organism_name: [Lactobacillus] rogosae


organism_name: Mesosutterella multiformis


organism_name: Roseburia inulinivorans


organism_name: Eubacterium ventriosum


organism_name: Lachnospiraceae bacterium


organism_name: Bacteroides stercoris


organism_name: Faecalibacterium sp.


organism_name: Anaerotignum faecicola


organism_name: Dysosmobacter sp.


organism_name: Parabacteroides distasonis


organism_name: Segatella copri


organism_name: Alistipes shahii


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes putredinis


organism_name: Candidatus Scatocola faecipullorum


organism_name: Bacteroides uniformis


organism_name: Phocaeicola vulgatus


organism_name: Parasutterella sp.


organism_name: Waltera sp.


organism_name: Roseburia faecis


organism_name: Akkermansia sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Parasutterella excrementihominis


organism_name: Escherichia coli


organism_name: Faecalibacterium sp.


organism_name: Bacilli bacterium


organism_name: Christensenellales bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Acutalibacteraceae bacterium


organism_name: Ruminococcus sp.


organism_name: Lachnospiraceae bacterium


organism_name: Barnesiella intestinihominis


organism_name: Clostridia bacterium


organism_name: Alistipes putredinis


organism_name: Candidatus Pelethomonas sp.


organism_name: [Eubacterium] siraeum


organism_name: Agathobacter rectalis


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides uniformis


organism_name: Bacteroides caccae


organism_name: Akkermansia muciniphila


organism_name: Oscillospiraceae bacterium


organism_name: Parabacteroides distasonis


organism_name: Eshraghiella crossota


organism_name: Christensenellales bacterium


organism_name: Muribaculaceae bacterium


organism_name: Escherichia coli


organism_name: Candidatus Borkfalkia sp.


organism_name: Coprococcus sp.


organism_name: Candidatus Limivicinus sp.


organism_name: Eubacterium sp.


organism_name: Bacilli bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Parabacteroides johnsonii


organism_name: Alistipes putredinis


organism_name: Candidatus Scybalousia sp.


organism_name: Segatella copri


organism_name: Eubacteriales bacterium


organism_name: Bacteroides uniformis


organism_name: Candidatus Alistipes avistercoris


organism_name: Oscillospiraceae bacterium


organism_name: Phocaeicola sp.


organism_name: Waltera sp.


organism_name: Clostridia bacterium


organism_name: Candidatus Onthovivens sp.


organism_name: Candidatus Scatosoma sp.


organism_name: Agathobacter rectalis


organism_name: Ruminococcus sp.


organism_name: Phocaeicola vulgatus


organism_name: Candidatus Fimenecus sp.


organism_name: Sutterella wadsworthensis


organism_name: Lachnospira sp.


organism_name: Alistipes communis


organism_name: Alistipes onderdonkii


organism_name: Eubacterium sp.


organism_name: Dysosmobacter welbionis


organism_name: Escherichia coli


organism_name: Alistipes putredinis


organism_name: Faecalibacterium prausnitzii


organism_name: Parabacteroides distasonis


organism_name: Phascolarctobacterium faecium


organism_name: Xylanibacter rarus


organism_name: Parasutterella excrementihominis


organism_name: Phocaeicola plebeius


organism_name: Acidaminococcus intestini


organism_name: Phocaeicola vulgatus


organism_name: Segatella copri


organism_name: Bacteroides ovatus


organism_name: Akkermansia sp.


organism_name: Oscillospiraceae bacterium


organism_name: Roseburia faecis


organism_name: Alistipes onderdonkii


organism_name: Christensenellales bacterium


organism_name: Allofournierella sp.


organism_name: Candidatus Pelethousia gallinarum


organism_name: Candidatus Scatomorpha merdavium


organism_name: Parabacteroides distasonis


organism_name: Ruminococcus sp.


organism_name: Waltera sp.


organism_name: Candidatus Scatocola faecipullorum


organism_name: Alistipes putredinis


organism_name: Sutterella wadsworthensis


organism_name: Bacteroidaceae bacterium


organism_name: Prevotella sp.


organism_name: Enterocloster clostridioformis


asm_submitter: University Hospital Basel

excluded_from_refseq: from large multi-isolate project

organism_name: Escherichia coli


asm_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI

organism_name: Lacticaseibacillus styriensis


asm_submitter: University of Toronto Mississauga

organism_name: Pseudomonas cannabina


asm_submitter: University of Stellenbosch

organism_name: Buchnera aphidicola (Diuraphis noxia)


asm_submitter: University of Life Sciences in Lublin

organism_name: Erysipelothrix rhusiopathiae


asm_submitter: National Center for Biotechnology Information

organism_name: Streptococcus pyogenes


organism_name: Bacteroidales bacterium


organism_name: Alistipes shahii


organism_name: Oscillospiraceae bacterium


organism_name: Agathobacter rectalis


organism_name: Candidatus Pelethousia gallinarum


organism_name: Christensenellales bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Candidatus Scybalocola faecigallinarum


asm_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion


organism_name: Bacteroides ovatus


organism_name: Klebsiella pneumoniae


organism_name: Bacteroides sp.


organism_name: Alistipes putredinis


organism_name: Sutterella wadsworthensis


organism_name: Alistipes finegoldii


organism_name: Candidatus Fimenecus sp.


organism_name: Alistipes onderdonkii


organism_name: Dysosmobacter sp.


organism_name: Faecousia sp.


organism_name: Alistipes dispar


organism_name: Alistipes sp.


organism_name: Lactobacillus johnsonii


organism_name: Candidatus Merdimorpha sp.


organism_name: Anaerotruncus massiliensis (ex Liu et al. 2021)


organism_name: Phascolarctobacterium faecium


organism_name: Oscillospiraceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Bilophila wadsworthia


organism_name: Limosilactobacillus reuteri


organism_name: Faecalibacterium prausnitzii


organism_name: [Eubacterium] siraeum


organism_name: Candidatus Faecousia gallistercoris


organism_name: Candidatus Aphodousia faecalis


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Clostridia bacterium


organism_name: Alistipes putredinis


organism_name: Candidatus Pelethousia gallinarum


organism_name: Parabacteroides distasonis


organism_name: Bacteroidaceae bacterium


organism_name: Prevotellaceae bacterium


organism_name: Akkermansia sp.


organism_name: Escherichia coli


organism_name: Acinetobacter baumannii


organism_name: Pseudomonas aeruginosa


organism_name: Phocaeicola vulgatus


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Desulfovibrio sp.


organism_name: Roseburia hominis


organism_name: Klebsiella pneumoniae


organism_name: Candidatus Limivicinus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Merdousia gallistercoris


organism_name: Sutterella wadsworthensis


organism_name: Citrobacter freundii


organism_name: Alloprevotella sp.


organism_name: Ruminococcus sp.


organism_name: Gemmiger qucibialis


organism_name: Candidatus Limisoma sp.


organism_name: Escherichia coli


organism_name: Phocaeicola sp.


organism_name: Alistipes putredinis


organism_name: Christensenellales bacterium


organism_name: Coprococcus sp.


organism_name: Prevotella sp.


organism_name: Parasutterella excrementihominis


organism_name: Candidatus Fimenecus sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Waltera sp.


organism_name: [Eubacterium] siraeum


organism_name: Eubacterium sp.


organism_name: Alistipes finegoldii


organism_name: Candidatus Fimivicinus sp.


organism_name: Alistipes inops


organism_name: Alistipes communis


organism_name: Alistipes onderdonkii


organism_name: Oscillospiraceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Agathobacter rectalis


organism_name: Faecousia sp.


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides uniformis


organism_name: Ruminococcus sp.


organism_name: Dysosmobacter welbionis


organism_name: Parabacteroides distasonis


organism_name: Faecalibacterium prausnitzii


organism_name: Escherichia coli


organism_name: Acutalibacteraceae bacterium


organism_name: Candidatus Alistipes avistercoris


organism_name: Alistipes ihumii


organism_name: Alistipes putredinis


organism_name: Dysosmobacter sp.


organism_name: Bacilli bacterium


organism_name: Mesosutterella multiformis


organism_name: Roseburia faecis


organism_name: Bifidobacterium adolescentis


organism_name: Alistipes onderdonkii


organism_name: Salmonella enterica subsp. enterica serovar Derby


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter upsaliensis


organism_name: Ruminococcus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Ruthenibacterium sp.


organism_name: Alistipes shahii


organism_name: Alistipes finegoldii


organism_name: Akkermansia sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Gemmiger qucibialis


organism_name: Waltera sp.


asm_submitter: CDC

organism_name: Escherichia coli


organism_name: Christensenellales bacterium


organism_name: Collinsella aerofaciens


organism_name: Faecalibacterium prausnitzii


organism_name: Acidaminococcus intestini


organism_name: Candidatus Fimenecus sp.


organism_name: Bacteroides uniformis


organism_name: Alistipes putredinis


organism_name: Alistipes onderdonkii


organism_name: Alistipes ihumii


organism_name: Desulfovibrio sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Odoribacter laneus


organism_name: Faecalibacterium sp.


organism_name: Oscillospiraceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small; genus undefined

organism_name: [Eubacterium] siraeum


organism_name: Agathobacter rectalis


organism_name: Lachnospiraceae bacterium


organism_name: Escherichia coli


organism_name: Roseburia hominis


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides stercoris


organism_name: Parabacteroides distasonis


organism_name: Shigella sonnei


organism_name: Shigella flexneri


organism_name: Sutterella wadsworthensis


organism_name: Bilophila wadsworthia


organism_name: Alistipes onderdonkii


organism_name: Phascolarctobacterium faecium


organism_name: Alistipes putredinis


organism_name: Parasutterella excrementihominis


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Candidatus Alistipes avistercoris


asm_submitter: FDA


organism_name: Prevotella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Escherichia coli


organism_name: Phocaeicola plebeius


organism_name: Ruminococcus sp.


asm_submitter: Health Protection Agency


organism_name: Dorea longicatena


organism_name: Phocaeicola sp.


organism_name: Christensenellales bacterium


organism_name: Desulfovibrio sp.


organism_name: Sutterella wadsworthensis


organism_name: Mediterraneibacter sp.


organism_name: Acutalibacteraceae bacterium


organism_name: [Eubacterium] siraeum


organism_name: Adlercreutzia equolifaciens subsp. celatus


organism_name: Candidatus Protoclostridium sp.


organism_name: Alistipes putredinis


organism_name: Alistipes onderdonkii


organism_name: Clostridium sp.


organism_name: Bacteroidales bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Alistipes inops


organism_name: Akkermansia muciniphila


organism_name: Phocaeicola dorei


organism_name: Faecalibacterium sp.


organism_name: Alistipes shahii


organism_name: Faecalibacterium prausnitzii


organism_name: Escherichia coli


organism_name: Bacteroides salyersiae


organism_name: Phascolarctobacterium faecium


organism_name: Parasutterella excrementihominis


organism_name: Dysosmobacter sp.


organism_name: Candidatus Egerieenecus merdigallinarum


organism_name: Hominenteromicrobium sp.


organism_name: Gemmiger qucibialis


organism_name: Peptococcaceae bacterium


organism_name: Christensenellales bacterium


organism_name: Candidatus Acutalibacter ornithocaccae


organism_name: Agathobaculum butyriciproducens


organism_name: Limosilactobacillus oris


organism_name: Gemmiger sp.


organism_name: Desulfovibrio sp.


organism_name: Holdemanella porci


organism_name: Oscillospiraceae bacterium


organism_name: Blautia sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Ellagibacter sp.


organism_name: Sutterella wadsworthensis


organism_name: Alistipes onderdonkii


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Victivallis vadensis


organism_name: Duodenibacillus sp.


organism_name: Parabacteroides distasonis


organism_name: Escherichia coli


organism_name: Alistipes finegoldii


organism_name: Angelakisella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Phascolarctobacterium succinatutens


organism_name: Alistipes indistinctus


organism_name: Muribaculaceae bacterium


organism_name: Coprococcus sp.


organism_name: Prevotella sp.


organism_name: Ruminococcus bicirculans (ex Liu et al. 2021)


organism_name: Oscillospiraceae bacterium


organism_name: Barnesiella intestinihominis


organism_name: Succiniclasticum sp.


organism_name: Candidatus Fimivicinus sp.


organism_name: Streptococcus salivarius


organism_name: Sutterella parvirubra


organism_name: Parabacteroides distasonis


organism_name: Anaerotignum faecicola


organism_name: Dysosmobacter welbionis


organism_name: Alistipes inops


organism_name: Faecalibacterium prausnitzii


organism_name: Odoribacter splanchnicus


organism_name: Gemmiger formicilis


organism_name: Dysosmobacter sp.


organism_name: Candidatus Limisoma sp.


organism_name: Bilophila wadsworthia


organism_name: Bacteroides uniformis


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes onderdonkii


organism_name: Alistipes shahii


organism_name: Lachnospira sp.


organism_name: Angelakisella sp.


organism_name: Alistipes communis


organism_name: Faecalibacterium sp.


organism_name: Prevotella sp.


organism_name: Ruminococcus bicirculans (ex Liu et al. 2021)


organism_name: Alphaproteobacteria bacterium


organism_name: Sutterella wadsworthensis


organism_name: Candidatus Fimenecus sp.


organism_name: Parasutterella sp.


organism_name: Barnesiella intestinihominis


organism_name: Alistipes putredinis


organism_name: Alistipes ihumii


organism_name: Agathobacter rectalis


organism_name: Hominenteromicrobium sp.


organism_name: Gemmiger qucibialis


organism_name: Eubacteriales bacterium


organism_name: Dialister invisus


organism_name: Lachnospiraceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes indistinctus


organism_name: Alistipes finegoldii


organism_name: Ruminococcus sp.


organism_name: Evtepia sp.


organism_name: Akkermansia sp.


organism_name: Prevotellaceae bacterium


organism_name: Slackia isoflavoniconvertens


organism_name: Agathobaculum sp.


organism_name: Gemmiger formicilis


organism_name: Desulfovibrio sp.


organism_name: Paratractidigestivibacter faecalis


organism_name: Christensenellales bacterium


organism_name: Collinsella sp.


organism_name: Alistipes shahii


organism_name: Alistipes putredinis


organism_name: Faecousia sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Candidatus Bilophila faecipullorum


organism_name: Akkermansia muciniphila


organism_name: Mediterraneibacter gnavus


organism_name: Butyricimonas faecihominis


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Limivicinus sp.


organism_name: [Eubacterium] siraeum


organism_name: Acutalibacteraceae bacterium


organism_name: Parabacteroides distasonis


organism_name: Bacteroides intestinalis


organism_name: Escherichia coli


organism_name: Ruthenibacterium sp.


organism_name: Clostridium perfringens


organism_name: Barnesiella intestinihominis


organism_name: Lachnospira eligens


organism_name: Alistipes inops


organism_name: Christensenellales bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: Alistipes onderdonkii


organism_name: Candidatus Scatomorpha sp.


organism_name: Alistipes putredinis


organism_name: Anaerotruncus massiliensis (ex Liu et al. 2021)


organism_name: Pyramidobacter piscolens


organism_name: Bacteroides uniformis


organism_name: Ruminococcus bromii


organism_name: Enterococcus faecalis


organism_name: Streptococcus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Ruminococcus sp.


organism_name: Gemmiger qucibialis


organism_name: Eubacteriales bacterium


organism_name: Alistipes shahii


organism_name: Evtepia sp.


organism_name: Agathobacter rectalis


organism_name: Candidatus Ventricola sp.


organism_name: Escherichia coli


organism_name: Blautia sp.


organism_name: Hominenteromicrobium sp.


organism_name: Eggerthella lenta


organism_name: Collinsella sp.


organism_name: Limosilactobacillus fermentum


organism_name: Alistipes putredinis


organism_name: Candidatus Alistipes stercorigallinarum


organism_name: Candidatus Fimenecus sp.


organism_name: Succiniclasticum sp.


organism_name: Parabacteroides distasonis


organism_name: Phascolarctobacterium faecium


organism_name: Akkermansia sp.


organism_name: Christensenellales bacterium


organism_name: Candidatus Faecivicinus sp.


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Salmonella enterica subsp. enterica serovar Johannesburg


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Klebsiella pneumoniae


organism_name: Escherichia coli


organism_name: Sutterella sp.


organism_name: Candidatus Fimivicinus sp.


organism_name: Phocaeicola sp.


organism_name: Bacteroides uniformis


organism_name: Alistipes communis


organism_name: Alistipes putredinis


organism_name: Oscillospiraceae bacterium


organism_name: [Eubacterium] siraeum


organism_name: Alistipes finegoldii


organism_name: Prevotella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Faecousia sp.


organism_name: Alistipes shahii


organism_name: Akkermansia muciniphila


organism_name: Christensenellales bacterium


organism_name: Parabacteroides distasonis


organism_name: Waltera sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Phocaeicola dorei


organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Barnesiella intestinihominis


organism_name: Bilophila wadsworthia


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroides cellulosilyticus


organism_name: Coprococcus eutactus


organism_name: Blautia faecis


organism_name: Candidatus Borkfalkia ceftriaxoniphila


organism_name: Alistipes putredinis


organism_name: Ruminococcus sp.


organism_name: Akkermansia muciniphila


organism_name: Alistipes ihumii


organism_name: Faecousia sp.


organism_name: Collinsella aerofaciens


organism_name: Christensenellales bacterium


organism_name: Alistipes onderdonkii


organism_name: Acutalibacteraceae bacterium


organism_name: Candidatus Woodwardiibium sp.


organism_name: Alistipes shahii


organism_name: Agathobacter rectalis


organism_name: Dysosmobacter sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Eubacterium sp.


organism_name: Faecalibacterium sp.


organism_name: Sutterella wadsworthensis


organism_name: Parabacteroides distasonis


organism_name: Prevotella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Gemmiger qucibialis


organism_name: Waltera sp.


organism_name: Bilophila wadsworthia


organism_name: Enterocloster bolteae


organism_name: Bacteroides thetaiotaomicron


organism_name: Phocaeicola sp.


organism_name: Bacteroides clarus


organism_name: Candidatus Coproplasma sp.


organism_name: Collinsella sp.


organism_name: Candidatus Borkfalkia ceftriaxoniphila


organism_name: Agathobacter rectalis


organism_name: Acutalibacteraceae bacterium


organism_name: Bifidobacterium longum


organism_name: Alistipes putredinis


organism_name: [Eubacterium] siraeum


organism_name: Alistipes shahii


organism_name: Parasutterella excrementihominis


organism_name: Roseburia faecis


organism_name: Clostridium fessum


organism_name: Barnesiella intestinihominis


organism_name: Bacteroides stercoris


organism_name: Faecalibacterium prausnitzii


organism_name: Oscillospiraceae bacterium


organism_name: Phocaeicola dorei


organism_name: Bilophila wadsworthia


organism_name: Parabacteroides distasonis


organism_name: Alistipes onderdonkii


organism_name: Waltera sp.


organism_name: Angelakisella sp.


organism_name: Candidatus Limadaptatus sp.


organism_name: Bacteroides uniformis


organism_name: Bacteroides ovatus


organism_name: Christensenellales bacterium


organism_name: Akkermansia sp.


organism_name: Ruminococcus sp.


organism_name: Alistipes putredinis


organism_name: Alistipes shahii


organism_name: Escherichia coli


organism_name: Agathobaculum sp.


organism_name: Faecalibacterium sp.


organism_name: Clostridiaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Sutterella wadsworthensis


organism_name: Enterobacter cloacae


organism_name: Bacteroides eggerthii


organism_name: Bacteroidales bacterium


organism_name: Muribaculaceae bacterium


organism_name: Barnesiella intestinihominis


organism_name: Candidatus Limivicinus sp.


organism_name: Candidatus Scybalocola faecigallinarum


organism_name: Christensenellales bacterium


organism_name: [Eubacterium] siraeum


organism_name: Alistipes sp.


organism_name: Candidatus Merdousia gallistercoris


organism_name: Alistipes putredinis


organism_name: Akkermansia muciniphila


organism_name: Gemmiger qucibialis


organism_name: Alphaproteobacteria bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Parabacteroides distasonis


organism_name: Alistipes onderdonkii


organism_name: Candidatus Fimenecus sp.


organism_name: Candidatus Fimimonas sp.


organism_name: Sutterella wadsworthensis


organism_name: Barnesiella intestinihominis


organism_name: Bacteroidales bacterium


organism_name: Christensenellaceae bacterium


organism_name: Veillonella sp.


organism_name: Prevotella sp.


organism_name: Ruminococcus sp.


organism_name: Klebsiella pneumoniae


organism_name: Faecalibacterium prausnitzii


organism_name: Dysosmobacter sp.


organism_name: Candidatus Limisoma sp.


organism_name: Duodenibacillus massiliensis


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes putredinis


organism_name: Bacteroides uniformis


organism_name: Phocaeicola vulgatus


organism_name: Gemmiger qucibialis


organism_name: Roseburia faecis


organism_name: Coprococcus sp.


organism_name: Parasutterella excrementihominis


organism_name: Candidatus Fimenecus sp.


organism_name: Akkermansia muciniphila


organism_name: Christensenellales bacterium


organism_name: [Eubacterium] siraeum


organism_name: Escherichia coli


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Ruminococcus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Sutterella wadsworthensis


organism_name: Clostridia bacterium


organism_name: Lachnospira sp.


organism_name: Faecalibacterium sp.


organism_name: Eubacterium sp.


organism_name: Akkermansia sp.


organism_name: Lachnospiraceae bacterium


organism_name: Bacteroides uniformis


organism_name: Waltera sp.


organism_name: Oscillospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes putredinis


organism_name: Candidatus Fimivicinus sp.


organism_name: Agathobacter rectalis


organism_name: Alistipes finegoldii


organism_name: Bacteroides cellulosilyticus


organism_name: Phocaeicola dorei


organism_name: Coprobacter fastidiosus


organism_name: Alistipes onderdonkii


organism_name: [Lactobacillus] rogosae


organism_name: Bacteroides thetaiotaomicron


organism_name: Parabacteroides distasonis


organism_name: [Clostridium] symbiosum


organism_name: Phocaeicola vulgatus


organism_name: Phascolarctobacterium sp.


organism_name: Faecalibacterium sp.


organism_name: Bacteroides uniformis


organism_name: [Clostridium] leptum


organism_name: Escherichia coli


organism_name: Alistipes sp.


organism_name: Dysosmobacter welbionis


organism_name: Anaeromassilibacillus sp.


organism_name: Bacteroides ovatus


organism_name: Dysosmobacter sp.


organism_name: Anaerotruncus massiliensis (ex Liu et al. 2021)


organism_name: Phascolarctobacterium faecium


organism_name: Candidatus Scatocola faecipullorum


organism_name: Acutalibacter sp.


organism_name: Bacteroides sp.


organism_name: Parasutterella sp.


organism_name: Prevotella sp.


organism_name: Enterocloster clostridioformis


organism_name: Dialister invisus


organism_name: Parabacteroides distasonis


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes putredinis


organism_name: Paraprevotella clara


organism_name: Akkermansia muciniphila


organism_name: Candidatus Fimenecus sp.


organism_name: Bacteroides uniformis


organism_name: Faecalibacterium sp.


organism_name: Barnesiella intestinihominis


organism_name: Bacteroides ovatus


organism_name: Roseburia faecis


organism_name: Phascolarctobacterium faecium


organism_name: Parasutterella excrementihominis


organism_name: Candidatus Scatocola faecipullorum


organism_name: Alistipes onderdonkii


organism_name: Acidaminococcus intestini


organism_name: Dysosmobacter welbionis


organism_name: Parabacteroides distasonis


organism_name: Faecalibacterium prausnitzii


organism_name: Candidatus Merdicola sp.


organism_name: Dysosmobacter sp.


organism_name: Christensenellales bacterium


organism_name: Alistipes putredinis


organism_name: Candidatus Faeciplasma gallinarum


organism_name: [Lactobacillus] rogosae


organism_name: Gemmiger formicilis


organism_name: Phocaeicola vulgatus


organism_name: Porphyromonas sp.


organism_name: Odoribacter splanchnicus


organism_name: Bifidobacterium longum


organism_name: Ruminococcus sp.


organism_name: Waltera sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroides cellulosilyticus


organism_name: Eshraghiella crossota


organism_name: Agathobacter rectalis


organism_name: Barnesiella intestinihominis


organism_name: Angelakisella sp.


organism_name: Phascolarctobacterium faecium


organism_name: Roseburia hominis


organism_name: Faecalibacterium sp.


organism_name: Parabacteroides distasonis


organism_name: Alistipes onderdonkii


organism_name: Parabacteroides johnsonii


organism_name: Phocaeicola dorei


organism_name: Parasutterella sp.


organism_name: Alistipes putredinis


organism_name: Roseburia faecis


organism_name: Akkermansia sp.


organism_name: Bacteroides uniformis


organism_name: Acidaminococcus intestini


organism_name: Parasutterella excrementihominis


organism_name: Roseburia intestinalis


organism_name: Fusicatenibacter saccharivorans


organism_name: Bacteroides thetaiotaomicron


organism_name: Blautia wexlerae


organism_name: Ruminococcus sp.


organism_name: Clostridia bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: Bacteroides caccae


organism_name: Parabacteroides distasonis


organism_name: Escherichia coli


excluded_from_refseq: derived from metagenome; genome length too small; genus undefined

organism_name: [Eubacterium] siraeum


excluded_from_refseq: derived from metagenome

organism_name: Phocaeicola sp.


organism_name: Alistipes putredinis


organism_name: Lachnospiraceae bacterium


organism_name: Odoribacter laneus


organism_name: Akkermansia muciniphila


organism_name: Bacteroides uniformis


organism_name: Candidatus Merdicola sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Phocaeicola vulgatus


organism_name: Blautia sp.


organism_name: Tannerellaceae bacterium


organism_name: Collinsella sp.


organism_name: Flavonifractor plautii


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Lacrimispora saccharolytica


organism_name: Enterocloster sp.


organism_name: Oliverpabstia sp.


organism_name: Candidatus Fimivicinus sp.


organism_name: Bifidobacterium adolescentis


organism_name: Waltera sp.


organism_name: Parabacteroides distasonis


organism_name: Alistipes putredinis


organism_name: Dysosmobacter sp.


organism_name: Roseburia faecis


organism_name: Akkermansia sp.


organism_name: Parasutterella excrementihominis


organism_name: Bacteroides uniformis


organism_name: Segatella copri


organism_name: Phocaeicola vulgatus


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Prevotella sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Ruminococcus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Fimenecus sp.


organism_name: Bacteroides stercoris


organism_name: Roseburia inulinivorans


organism_name: Faecalibacterium sp.


organism_name: Eubacterium ventriosum


organism_name: Escherichia coli


organism_name: Anaerotignum faecicola


organism_name: Mesosutterella multiformis


organism_name: [Lactobacillus] rogosae


organism_name: Parabacteroides distasonis


organism_name: Lachnospiraceae bacterium


organism_name: Phocaeicola vulgatus


organism_name: Akkermansia sp.


organism_name: Clostridia bacterium


organism_name: Christensenellales bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Alistipes putredinis


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroides uniformis


organism_name: Faecalibacterium prausnitzii


organism_name: Bacilli bacterium


organism_name: Barnesiella intestinihominis


organism_name: Ruminococcus sp.


organism_name: Alistipes finegoldii


organism_name: Bacteroides sp.


organism_name: Segatella copri


organism_name: Parabacteroides distasonis


organism_name: Bacteroides thetaiotaomicron


organism_name: Faecalibacterium sp.


organism_name: Hominenteromicrobium sp.


organism_name: Angelakisella sp.


organism_name: Candidatus Evtepia excrementipullorum


organism_name: Neglectibacter timonensis


organism_name: Coprococcus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Adlercreutzia equolifaciens subsp. celatus


organism_name: Candidatus Fusicatenibacter merdavium


organism_name: Gemmiger sp.


organism_name: Enterococcus durans


organism_name: Bifidobacterium dentium


organism_name: Paraeggerthella sp.


organism_name: Akkermansia muciniphila


organism_name: Bifidobacterium longum


organism_name: Escherichia coli


organism_name: Dorea sp.


organism_name: Agathobacter rectalis


organism_name: Agathobaculum butyriciproducens


organism_name: Eggerthella lenta


organism_name: Collinsella sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Gordonibacter pamelaeae


organism_name: Gemmiger qucibialis


organism_name: Candidatus Ventricola sp.


organism_name: Eggerthellaceae bacterium


organism_name: Ellagibacter isourolithinifaciens


organism_name: Oscillospiraceae bacterium


organism_name: Adlercreutzia equolifaciens


organism_name: Alistipes putredinis


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Christensenellales bacterium


organism_name: Slackia sp.


organism_name: Gemmiger formicilis


organism_name: Collinsella bouchesdurhonensis


organism_name: Bifidobacterium adolescentis


organism_name: Candidatus Evtepia excrementipullorum


organism_name: Slackia isoflavoniconvertens


organism_name: Coriobacteriales bacterium


organism_name: Akkermansia muciniphila


organism_name: Paratractidigestivibacter sp.


organism_name: Collinsella sp.


organism_name: Hominenteromicrobium sp.


organism_name: Candidatus Ventricola sp.


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Bifidobacterium longum


organism_name: Gemmiger qucibialis


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes inops


organism_name: Fusicatenibacter saccharivorans


organism_name: Candidatus Scatomorpha sp.


organism_name: Bifidobacterium bifidum


organism_name: Eggerthellaceae bacterium


organism_name: Candidatus Evtepia faecavium


organism_name: Enteroscipio rubneri


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Ruminococcus sp.


organism_name: Adlercreutzia equolifaciens subsp. celatus


organism_name: Candidatus Limiplasma merdipullorum


organism_name: Alistipes onderdonkii


organism_name: Eggerthella lenta


organism_name: Collinsella sp.


organism_name: Candidatus Ventricola sp.


organism_name: Peptococcaceae bacterium


organism_name: Slackia isoflavoniconvertens


organism_name: Bifidobacterium adolescentis