asm_submitter: Xinjiang Academy of Agriculture and Reclamation Science


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: School of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo

assembly_level: Contig

assembly_type: haploid

genome_rep: Full

group: bacteria

organism_name: Klebsiella pneumoniae

paired_asm_comp: identical

release_type: Major

version_status: latest


asm_submitter: University of Wyoming

organism_name: Listeria monocytogenes


asm_submitter: University of Georgia

organism_name: Pantoea stewartii subsp. indologenes


organism_name: Pantoea ananatis


asm_submitter: University of Arizona

organism_name: Schaalia turicensis


organism_name: Pantoea eucalypti


asm_submitter: Poznan University of Technology

organism_name: Mesorhizobium sp. PUT5


organism_name: Escherichia coli


asm_submitter: Euromed University of Fes

assembly_level: Scaffold

organism_name: Streptomyces sp. JW3


asm_submitter: Universidad Nacional Autonoma de Mexico. Centro de Ciencias Genomicas

assembly_level: Complete Genome

organism_name: Acinetobacter baumannii


asm_submitter: Faculty of Science

infraspecific_name: strain=FH

organism_name: Bacillus sp. FH


asm_submitter: Institute of Environmental Microbiology

organism_name: Mucilaginibacter rubeus

relation_to_type_material: assembly from type material


asm_submitter: Hebei Normal University of Science &Technology

organism_name: Acidaminococcus nyctereutis

refseq_category: reference genome


asm_submitter: North South University

organism_name: Pseudomonas aeruginosa


asm_submitter: National Vererinary Research Intitute

organism_name: Ornithobacterium rhinotracheale


asm_submitter: National Institute of Biotechnology

organism_name: Enterobacter hormaechei


asm_submitter: UNIVERSIDADE CEUMA

infraspecific_name: strain=Lp M2

organism_name: Lactiplantibacillus plantarum


asm_submitter: Saint-Petersburg Pasteur Institute

infraspecific_name: strain=2553 StPb PI

organism_name: Yersinia sp. 2553 StPb PI


infraspecific_name: strain=2545 StPb PI

organism_name: Yersinia sp. 2545 StPb PI


infraspecific_name: strain=2541 StPb PI

organism_name: Yersinia sp. 2541 StPb PI


infraspecific_name: strain=2540 StPb PI

organism_name: Yersinia sp. 2540 StPb PI


infraspecific_name: strain=2538 StPb PI

organism_name: Yersinia sp. 2538 StPb PI


asm_submitter: Zhejiang Sci-Tech University

organism_name: Leeuwenhoekiella sp. H156


asm_submitter: McMaster University

excluded_from_refseq: fragmented assembly

organism_name: Serratia nevei


organism_name: Serratia ureilytica


organism_name: Serratia marcescens


excluded_from_refseq: annotation fails completeness check


organism_name: Serratia bockelmannii


organism_name: Serratia nematodiphila


asm_submitter: Chattogram Veterinary and Animal Sciences University

organism_name: Escherichia coli


asm_submitter: Sanya people's hospital

excluded_from_refseq: unverified source organism

organism_name: Malaciobacter sp. WC5094


asm_submitter: INIAV

organism_name: Staphylococcus aureus


asm_submitter: GDMCC

organism_name: Paracidovorax citrulli


asm_submitter: Guizhou Medical University

organism_name: Vagococcus sp. WN89Y


asm_submitter: Nanjing Normal University

organism_name: Microbacterium sp. RD1


asm_submitter: University of Veterinary Medicine Vienna

organism_name: Streptococcus pyogenes


asm_submitter: University of Delhi South Campus


asm_submitter: Chulalongkorn University

organism_name: Anoxybacteroides rupiense


organism_name: Geobacillus sp. BK01


asm_submitter: Gauhati University

organism_name: Micrococcus sp. TCR-5


asm_submitter: Universidade Federal da Paraiba

organism_name: Streptococcus agalactiae


asm_submitter: IBCH RAN

infraspecific_name: strain=MAR 21-2688

organism_name: Acinetobacter baumannii


asm_submitter: South China Agricultural University

organism_name: Enterobacter hormaechei


asm_submitter: Toho University School of Medicine

organism_name: Stenotrophomonas maltophilia


asm_submitter: Jeonbuk National University The Korea Zoonosis Research Institute

organism_name: Coxiella burnetii


asm_submitter: University of Pittsburgh

organism_name: Mycobacteroides abscessus


asm_submitter: University of Sao Paulo

organism_name: Klebsiella quasipneumoniae subsp. similipneumoniae


asm_submitter: NEB

infraspecific_name: strain=ATCC 35406

organism_name: Porphyromonas endodontalis


asm_submitter: University of Naples Federico II

organism_name: Lactobacillus paragasseri


infraspecific_name: strain=J1_ID 2029


organism_name: Limosilactobacillus fermentum


organism_name: Lactobacillus crispatus


infraspecific_name: strain=U2_ID 2026


organism_name: Lactobacillus gasseri


infraspecific_name: strain=S1_ID 2028


asm_submitter: McMaster University

organism_name: Serratia nematodiphila


organism_name: Serratia marcescens


organism_name: Serratia ureilytica


organism_name: Serratia nevei


organism_name: Serratia bockelmannii


asm_submitter: Fujian Agriculture and Forestry University

organism_name: Klebsiella pneumoniae


organism_name: Staphylococcus aureus


asm_submitter: North China University of Science and Technology

organism_name: Streptomyces sp. 24-1644


asm_submitter: YUNNAN ACADEMY OF AGRICULTURAL SCIENCES

organism_name: Burkholderia gladioli


asm_submitter: Ningxia University

organism_name: Lentilactobacillus hilgardii


asm_submitter: University of Veterinary Medicine Vienna

organism_name: Pseudomonas aeruginosa


asm_submitter: Universidad Nacional Autonoma de Mexico

organism_name: Enterococcus faecalis


asm_submitter: Health Protection Agency

excluded_from_refseq: from large multi-isolate project

organism_name: Escherichia coli


organism_name: Shigella flexneri


organism_name: Shigella sonnei


organism_name: Shigella boydii


asm_submitter: National Center for Biotechnology Information

organism_name: Klebsiella ornithinolytica


organism_name: Klebsiella planticola


organism_name: Klebsiella michiganensis


organism_name: Klebsiella oxytoca


organism_name: Neisseria meningitidis


organism_name: Klebsiella variicola subsp. variicola


organism_name: Klebsiella pneumoniae


organism_name: Klebsiella quasipneumoniae subsp. similipneumoniae


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Klebsiella aerogenes


organism_name: Citrobacter freundii


asm_submitter: Public Health England

organism_name: Vibrio cholerae


organism_name: Yersinia enterocolitica


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Salmonella enterica subsp. enterica serovar Bareilly


organism_name: Escherichia coli


organism_name: Shigella flexneri


organism_name: Shigella sonnei


asm_submitter: CDC


organism_name: Vibrio parahaemolyticus


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


organism_name: Salmonella enterica


asm_submitter: FDA Center for Food Safety and Applied Nutrition


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Salmonella enterica subsp. enterica serovar Oranienburg


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Vibrio alginolyticus


organism_name: Campylobacter coli


organism_name: Yersinia enterocolitica


organism_name: Klebsiella pneumoniae


organism_name: Acinetobacter baumannii


organism_name: Enterobacter cloacae


organism_name: Escherichia coli


organism_name: Pseudomonas aeruginosa


organism_name: Streptococcus pyogenes


organism_name: Vibrio fluvialis


organism_name: Shigella flexneri


organism_name: Vibrio diabolicus


organism_name: Vibrio parahaemolyticus


organism_name: Campylobacter jejuni


organism_name: Shigella sonnei


asm_submitter: Vet-LIRN-CVM-FDA

organism_name: Staphylococcus pseudintermedius


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Proteus mirabilis


organism_name: Vibrio vulnificus


organism_name: Salmonella enterica subsp. enterica serovar Kiambu


organism_name: Legionella pneumophila


organism_name: Klebsiella pneumoniae


organism_name: Acinetobacter baumannii


organism_name: Enterobacter hormaechei


organism_name: Escherichia coli


organism_name: Vibrio cholerae


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Shigella flexneri


asm_submitter: Shanghai Jiao Tong Uniersity

organism_name: Salmonella enterica


asm_submitter: Chongqing Institute of Medicinal Plant Cultivation

organism_name: Bacillus velezensis


organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Worthington


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: US Food and Drug Administration


organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


asm_submitter: Guangxi Academy of Sciences

organism_name: Chitinirhabdus sediminis


asm_submitter: University of Bern

organism_name: Basfia succiniciproducens


organism_name: Escherichia coli


organism_name: Shigella sonnei


asm_submitter: FDA/CFSAN

organism_name: Listeria monocytogenes


organism_name: Cronobacter sakazakii


organism_name: Shigella flexneri


organism_name: Cronobacter turicensis


organism_name: Cronobacter dublinensis


organism_name: Yersinia enterocolitica


organism_name: Streptococcus pyogenes


asm_submitter: Jiangxi Agricultural University

organism_name: Rothia koreensis


isolate: Legionella pneumophila serogroup 1

organism_name: Legionella pneumophila


organism_name: Salmonella enterica subsp. enterica serovar Chailey


organism_name: Enterococcus hirae


organism_name: Salmonella enterica subsp. enterica serovar Muenster


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Enterococcus faecalis


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Campylobacter jejuni


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


isolate: Legionella pneumophila serogroup 2-14


organism_name: Shigella flexneri


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Hadar


asm_submitter: Poznan University of Technology

organism_name: Stenotrophomonas sp. PUT21


asm_submitter: Heze University

organism_name: Lactiplantibacillus plantarum


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Salmonella enterica subsp. enterica serovar Berta


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


organism_name: Salmonella enterica subsp. enterica serovar Muenster


organism_name: Enterococcus faecalis


asm_submitter: Yunnan Agricultural University

organism_name: Bacillus subtilis


asm_submitter: State Key Laboratory of Dairy Biotechnology. Bright Dairy & Food Co.,Ltd.

organism_name: Bifidobacterium longum


asm_submitter: McMaster University

organism_name: Serratia marcescens


asm_submitter: University at Albany

organism_name: Listeria monocytogenes


asm_submitter: UIUC

excluded_from_refseq: derived from metagenome

organism_name: Treponema succinifaciens


organism_name: Succinivibrio sp.


asm_submitter: Beijing Center for Disease Prevention and Control

organism_name: Escherichia coli


asm_submitter: National Center for Biotechnology Information

organism_name: Streptococcus suis


organism_name: Pasteurella multocida


asm_submitter: CDC


organism_name: Shigella flexneri


organism_name: Salmonella enterica


organism_name: Shigella sonnei


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter coli


organism_name: Campylobacter jejuni


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Enterobacter asburiae


organism_name: Klebsiella pneumoniae


organism_name: Staphylococcus aureus


organism_name: Acinetobacter baumannii


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Enterobacter hormaechei


organism_name: Proteus mirabilis


asm_submitter: USDA FSIS


excluded_from_refseq: contaminated; from large multi-isolate project


organism_name: Escherichia coli


organism_name: Pseudomonas aeruginosa


organism_name: Enterobacter ludwigii


organism_name: Klebsiella planticola


organism_name: Citrobacter freundii


organism_name: Providencia rettgeri


organism_name: Klebsiella ornithinolytica


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Bovismorbificans


asm_submitter: FDA Center for Food Safety and Applied Nutrition


organism_name: Salmonella enterica subsp. enterica serovar Ruiru


organism_name: Salmonella enterica subsp. enterica serovar Senftenberg


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica serovar Havana


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Enterobacter hormaechei


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Citrobacter braakii


organism_name: Shigella flexneri


organism_name: Escherichia coli


organism_name: Acinetobacter baumannii


organism_name: Enterobacter ludwigii


organism_name: Enterococcus faecium


organism_name: Staphylococcus aureus


organism_name: Klebsiella pneumoniae


organism_name: Pseudomonas aeruginosa


organism_name: Pseudomonas putida


organism_name: Campylobacter coli


organism_name: Campylobacter jejuni


organism_name: Legionella pneumophila


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Providencia rettgeri


organism_name: Citrobacter freundii


organism_name: Enterobacter hormaechei


organism_name: Klebsiella variicola


organism_name: Shigella flexneri


organism_name: Campylobacter jejuni subsp. jejuni


organism_name: Acinetobacter baumannii


organism_name: Neisseria meningitidis


organism_name: Escherichia coli


organism_name: Salmonella enterica


organism_name: Klebsiella pneumoniae


organism_name: Campylobacter upsaliensis


organism_name: Yersinia enterocolitica


organism_name: Vibrio vulnificus


asm_submitter: Saint-Petersburg Pasteur Institute

infraspecific_name: strain=3112 StPb PI


asm_submitter: Vanderbilt University

organism_name: Streptomyces sp. IBSNAI002


asm_submitter: Bellevue University

infraspecific_name: strain=NSM

organism_name: Rhodobacter sp. NSM


asm_submitter: National Institute of Biotechnology


asm_submitter: Indian Institute of Science Education and Research Kolkata

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Bacillus sp. 3A_MP1


infraspecific_name: strain=3110 StPb PI


infraspecific_name: strain=3111 StPb PI


organism_name: Streptomyces sp. IBSNAI001


organism_name: Paenibacillus sp. 1A_MP2


asm_submitter: The First Affiliated Hospital of Nanchang University

organism_name: Pseudomonas aeruginosa


infraspecific_name: strain=3224 StPb PI


asm_submitter: Universidad de la Republica

organism_name: Pseudomonas sp. B392_1p


asm_submitter: Wayne State University

organism_name: Enterococcus faecium


asm_submitter: Ondokuz Mayis University

organism_name: Streptomyces sp. 4N124


organism_name: Streptomyces sp. 8N706


organism_name: Streptomyces sp. 7N604


organism_name: Escherichia coli


organism_name: Pseudarthrobacter sp. 1C304


organism_name: Streptomyces sp. KR80


organism_name: Streptomyces sp. 2A115


organism_name: Shigella flexneri


organism_name: Nonomuraea sp. KM88


organism_name: Streptomyces sp. KR55


organism_name: Streptomyces sp. 4N509B


organism_name: Shigella sonnei


organism_name: Mycobacterium sp. 4D054


asm_submitter: China University of Geosciences

organism_name: Halanaerobium saccharolyticum


organism_name: Streptomyces sp. 8N114


organism_name: Actinomadura sp. 3N407


organism_name: Nonomuraea sp. 10N515B


organism_name: Nonomuraea sp. 3N208


asm_submitter: CDC

organism_name: Vibrio parahaemolyticus


asm_submitter: National Center for Biotechnology Information

organism_name: Yersinia enterocolitica


asm_submitter: institute of Microbiology, UCAS

organism_name: Streptomyces sp. SDT5-1


organism_name: Bacillus sp. 4A_MP2


organism_name: Escherichia coli


organism_name: Bacillus sp. 4A_MP3


organism_name: Pseudomonas aeruginosa


asm_submitter: FDA


organism_name: Oceanobacillus sp. M65


organism_name: Piscibacillus sp. B03


organism_name: Streptomyces sp. 3N207


organism_name: Streptomyces sp. 6N106


organism_name: Streptomyces sp. 8N616


organism_name: Salmonella enterica


organism_name: Shigella flexneri


organism_name: Streptomyces sp. 6N223


organism_name: Nonomuraea sp. KM90


organism_name: Gracilibacillus sp. D59


organism_name: Halobacillus sp. H74


organism_name: Pseudalkalibacillus sp. R45


organism_name: Halobacillus sp. B29


organism_name: Virgibacillus sp. L01


organism_name: Halobacillus sp. K22


asm_submitter: Visva Bharati

organism_name: Brucella sp. RRSP16


asm_submitter: Xiamen University

organism_name: Cereibacter sphaeroides


asm_submitter: CSIR-IMTECH

organism_name: Gordonia paraffinivorans


organism_name: Streptomyces sp. GDS52


organism_name: Pseudomonas aeruginosa


organism_name: Saccharopolyspora antiqui


asm_submitter: The University of Texas at Austin

excluded_from_refseq: derived from metagenome; genus undefined

group: archaea

organism_name: Candidatus Bathyarchaeota archaeon


asm_submitter: National Microbiology Laboratory

infraspecific_name: strain=ATCC 19409

organism_name: Corynebacterium diphtheriae


asm_submitter: Public Health England

organism_name: Campylobacter jejuni


asm_submitter: Health Protection Agency

organism_name: Listeria monocytogenes


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


organism_name: Escherichia coli


organism_name: Enterobacter roggenkampii


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter coli


organism_name: Shigella flexneri


organism_name: Shigella sonnei


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Sandiego


organism_name: Vibrio parahaemolyticus


asm_submitter: USDA FSIS


organism_name: Salmonella enterica subsp. enterica serovar Alachua


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Hadar


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Cerro


asm_submitter: FDA Center for Food Safety and Applied Nutrition


organism_name: Campylobacter jejuni


organism_name: Vibrio cholerae


organism_name: Escherichia coli


organism_name: Listeria monocytogenes


organism_name: Vibrio vulnificus


organism_name: Shigella flexneri


organism_name: Shigella sonnei


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


organism_name: Salmonella enterica


organism_name: Campylobacter coli


asm_submitter: University of Bern

organism_name: Clostridium perfringens


excluded_from_refseq: from large multi-isolate project; genome length too large


organism_name: Klebsiella quasipneumoniae subsp. similipneumoniae


organism_name: Klebsiella pneumoniae


organism_name: Klebsiella ornithinolytica


organism_name: Klebsiella variicola subsp. variicola


asm_submitter: CDC

organism_name: Vibrio parahaemolyticus


asm_submitter: CSIR-North East Institute of Science and Technology (CSIR-NEIST)

infraspecific_name: strain=MRC 21527

organism_name: Levilactobacillus zymae


organism_name: Streptococcus pyogenes


organism_name: Campylobacter jejuni


organism_name: Acinetobacter baumannii


organism_name: Enterobacter hormaechei


organism_name: Yersinia enterocolitica


asm_submitter: National Center for Biotechnology Information


organism_name: Vibrio alginolyticus


asm_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)

organism_name: Psychrobacter aquimaris


organism_name: Shigella flexneri


organism_name: Escherichia coli


organism_name: Pseudomonas aeruginosa


organism_name: Clostridium perfringens


organism_name: Campylobacter coli


organism_name: Listeria monocytogenes


organism_name: Proteus mirabilis


organism_name: Citrobacter braakii


organism_name: Klebsiella pneumoniae


organism_name: Shigella sonnei


asm_submitter: NCDA&CS


asm_submitter: FDA/CFSAN


organism_name: Vibrio cidicii


organism_name: Vibrio cholerae


organism_name: Acinetobacter baumannii


organism_name: Streptococcus pyogenes


organism_name: Vibrio fluvialis


organism_name: Vibrio alginolyticus


organism_name: Yersinia enterocolitica


organism_name: Enterobacter hormaechei


organism_name: Escherichia coli


organism_name: Campylobacter jejuni


organism_name: Clostridium perfringens


organism_name: Neisseria meningitidis


organism_name: Listeria monocytogenes


asm_submitter: FDA


organism_name: Shigella flexneri


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Campylobacter coli


organism_name: Salmonella enterica subsp. enterica serovar Johannesburg


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Klebsiella pneumoniae


asm_submitter: Huashan Hospital, Fudan University

organism_name: Streptococcus agalactiae


asm_submitter: Mahatma Gandhi Medical College & Research Institute,


asm_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


organism_name: Salmonella enterica subsp. enterica serovar Infantis


asm_submitter: Free University of Bozen-Bolzano

organism_name: Sodalis sp. (in: enterobacteria)


asm_submitter: Visva-Bharati

excluded_from_refseq: many frameshifted proteins

organism_name: Pantoea tagorei


isolate: CRpyris

organism_name: Candidatus Carsonella ruddii


asm_submitter: Institut Pasteur de Dakar

organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Psychrobacter faecalis


asm_submitter: Agriculture and Agri-Food Canada

organism_name: Psychrobacter sp. T6-3


organism_name: Psychrobacter sp. T6-6


organism_name: Psychrobacter aquimaris


organism_name: Glutamicibacter ardleyensis


organism_name: Psychrobacter glacincola


organism_name: Corynebacterium variabile


organism_name: Arthrobacter rhombi


organism_name: Psychrobacter alimentarius


organism_name: Psychrobacter sp. 1Y6


excluded_from_refseq: contaminated; fragmented assembly

organism_name: Marinobacter sp. 1Y8


organism_name: Psychrobacter sp. T6-4


organism_name: Psychrobacter sp. T6-1


organism_name: Psychrobacter sp. 1Y9


organism_name: Psychrobacter sp. T6-5


organism_name: Psychrobacter sp. 1Y7


organism_name: Corynebacterium casei


organism_name: Psychrobacter celer


organism_name: Brachybacterium alimentarium


organism_name: Brachybacterium tyrofermentans


organism_name: Glutamicibacter arilaitensis


organism_name: Clostridium perfringens


organism_name: Pseudomonas helleri


organism_name: Psychrobacter faecalis


organism_name: Enterococcus faecalis


organism_name: Lactococcus lactis


organism_name: Pseudomonas lundensis


organism_name: Hafnia alvei


organism_name: Psychrobacter alimentarius


organism_name: Pseudoalteromonas nigrifaciens


organism_name: Psychrobacter sp. 1Y10


asm_submitter: University of Johannesburg

organism_name: Bacillus sp. MHSD17


organism_name: Psychrobacter sp. 1Y11


organism_name: Psychrobacter sp. T6-2


organism_name: Brachybacterium paraconglomeratum


organism_name: Brachybacterium alimentarium


organism_name: Psychrobacter celer


organism_name: Corynebacterium variabile


organism_name: Clostridium perfringens


organism_name: Glutamicibacter ardleyensis


organism_name: Glutamicibacter arilaitensis


organism_name: Psychrobacter faecalis


organism_name: Corynebacterium casei


organism_name: Vreelandella alkaliphila


asm_submitter: United Arab Emirates University

organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


asm_submitter: Mississippi State University

organism_name: Acinetobacter sp. PFS20


asm_submitter: Academia Sinica

organism_name: Agrobacterium cavarae


organism_name: Agrobacterium pusense


organism_name: Agrobacterium salinitolerans


organism_name: Agrobacterium deltae


organism_name: Brachybacterium tyrofermentans


organism_name: Arthrobacter rhombi


organism_name: Enterococcus hirae


organism_name: Vreelandella titanicae


asm_submitter: University of Bern

organism_name: Clostridium perfringens


organism_name: Pseudomonas helleri


organism_name: Psychrobacter celer


organism_name: Psychrobacter faecalis


organism_name: Brachybacterium paraconglomeratum


organism_name: Glutamicibacter ardleyensis


organism_name: Glutamicibacter arilaitensis


organism_name: Brachybacterium alimentarium


organism_name: Psychrobacter alimentarius


organism_name: Enterobacter hormaechei


organism_name: Corynebacterium variabile


organism_name: Vreelandella alkaliphila


organism_name: Corynebacterium flavescens


organism_name: Psychrobacter aquimaris


organism_name: Psychrobacter namhaensis


organism_name: Enterococcus malodoratus


organism_name: Psychrobacter glacincola


organism_name: Corynebacterium casei


organism_name: Staphylococcus equorum


organism_name: Psychrobacter celer


organism_name: Pseudomonas helleri


organism_name: Arthrobacter rhombi


organism_name: Clostridium perfringens


organism_name: Glutamicibacter ardleyensis


organism_name: Brachybacterium tyrofermentans


organism_name: Brachybacterium alimentarium


organism_name: Pseudoalteromonas prydzensis


organism_name: Psychrobacter alimentarius


organism_name: Vreelandella alkaliphila


organism_name: Corynebacterium variabile


organism_name: Psychrobacter cibarius


organism_name: Psychrobacter aquimaris


organism_name: Psychrobacter immobilis


organism_name: Corynebacterium flavescens


organism_name: Glutamicibacter arilaitensis


organism_name: Corynebacterium casei


organism_name: Psychrobacter celer


organism_name: Brachybacterium paraconglomeratum


organism_name: Psychrobacter faecalis


organism_name: Psychrobacter maritimus


organism_name: Pseudomonas helleri


organism_name: Arthrobacter rhombi


organism_name: Brachybacterium tyrofermentans


organism_name: Brachybacterium alimentarium


organism_name: Clostridium perfringens


organism_name: Glutamicibacter ardleyensis


organism_name: Corynebacterium variabile


organism_name: Corynebacterium falsenii


organism_name: Psychrobacter namhaensis


organism_name: Psychrobacter glacincola


organism_name: Vreelandella alkaliphila


organism_name: Glutamicibacter arilaitensis


organism_name: Corynebacterium glyciniphilum


organism_name: Psychrobacter celer


asm_submitter: National Institute of Biotechnology

organism_name: Escherichia fergusonii


asm_submitter: Nofima AS

organism_name: Listeria monocytogenes


organism_name: Salmonella enterica


organism_name: Escherichia coli


asm_submitter: Instituto de Pesquisa Pele Pequeno Principe

organism_name: Pseudomonas aeruginosa


asm_submitter: Jining Medical University

infraspecific_name: strain=KCTC 42009

organism_name: Antarctobacter jejuensis


organism_name: Enterobacter chuandaensis


asm_submitter: China CDC

organism_name: Corynebacterium sp. A21


organism_name: Microbacterium sp. A204


organism_name: Microbacterium sp. A196


organism_name: Jeotgalibaca sp. A122


organism_name: Clostridium perfringens


organism_name: Jeotgalibaca sp. A127


asm_submitter: Sun Yat-sen University

organism_name: Streptococcus agalactiae


asm_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)

organism_name: Corynebacterium casei


organism_name: Corynebacterium variabile


organism_name: Arthrobacter rhombi


organism_name: Corynebacterium flavescens


organism_name: Brachybacterium alimentarium


organism_name: Klebsiella pneumoniae


asm_submitter: Institute of Medical Sciences

organism_name: Escherichia coli


asm_submitter: Nanjing Agricultural University

organism_name: Priestia megaterium


organism_name: Priestia flexa


asm_submitter: The University of Wisconsin-Madison

organism_name: Vulcanimicrobiaceae bacterium


asm_submitter: Public Health England

organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


asm_submitter: Health Protection Agency

organism_name: Listeria monocytogenes


organism_name: Yersinia enterocolitica


organism_name: Vibrio cholerae


organism_name: Salmonella enterica subsp. enterica serovar Bareilly


organism_name: Salmonella enterica subsp. enterica serovar Newport


asm_submitter: CDC


asm_submitter: FDA


asm_submitter: Centers for Disease Control and Prevention


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Vibrio vulnificus


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Clostridium perfringens


organism_name: Salmonella enterica subsp. enterica serovar Infantis


asm_submitter: National Center for Biotechnology Information


organism_name: Shigella flexneri


organism_name: Escherichia coli


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Neisseria meningitidis


organism_name: Salmonella enterica subsp. enterica serovar Bredeney


organism_name: Salmonella enterica subsp. enterica serovar Chester


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Klebsiella pneumoniae


organism_name: Pseudomonas aeruginosa


organism_name: Campylobacter jejuni


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Candidatus Limivicinus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Succinivibrio sp.


organism_name: Dialister sp.


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Onthousia sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Mediterraneibacter faecis


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Prevotella sp.


organism_name: Christensenellales bacterium


organism_name: Muribaculaceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Ruminococcus bromii


asm_submitter: University of Bern

organism_name: Clostridium perfringens


organism_name: Candidatus Limisoma sp.


organism_name: Collinsella sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Candidatus Cryptobacteroides bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Lachnospiraceae bacterium


organism_name: Akkermansia muciniphila


organism_name: Acutalibacteraceae bacterium


organism_name: Candidatus Fimenecus sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Candidatus Alistipes merdipullorum


excluded_from_refseq: contaminated; derived from metagenome


organism_name: Eubacterium sp.


organism_name: Clostridia bacterium


organism_name: Agathobaculum butyriciproducens


organism_name: Bifidobacterium longum


organism_name: Allocoprococcus comes


organism_name: Faecalibacterium prausnitzii


organism_name: Mediterraneibacter faecis


organism_name: Clostridium perfringens


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Collinsella sp.


organism_name: Eggerthellaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Angelakisella sp.


organism_name: Anaerostipes hadrus


organism_name: Paratractidigestivibacter faecalis


organism_name: Christensenellales bacterium


organism_name: Sodaliphilus sp.


organism_name: Agathobacter rectalis


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Acutalibacteraceae bacterium


organism_name: Gemmiger qucibialis


organism_name: [Clostridium] leptum


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Gemmiger formicilis


organism_name: Roseburia faecis


organism_name: Alistipes putredinis


organism_name: Lachnospiraceae bacterium


organism_name: Ruminococcus callidus


organism_name: Bifidobacterium adolescentis


organism_name: Candidatus Fimenecus sp.


organism_name: Flavonifractor plautii


organism_name: Blautia sp.


organism_name: Fusicatenibacter saccharivorans


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Lachnospira sp.


organism_name: Collinsella sp.


organism_name: Bacteroides uniformis


organism_name: Clostridium perfringens


organism_name: Dialister invisus


organism_name: Evtepia gabavorous


organism_name: Ruminococcus bromii


organism_name: Clostridia bacterium


organism_name: Adlercreutzia sp.


organism_name: Gemmiger qucibialis


organism_name: Faecalibacterium prausnitzii


organism_name: Faecalibacterium sp.


asm_submitter: EPFL

infraspecific_name: strain=classical O395

organism_name: Vibrio cholerae


organism_name: Oscillospiraceae bacterium


organism_name: Ligilactobacillus ruminis


organism_name: Agathobacter rectalis


organism_name: [Ruminococcus] lactaris


organism_name: Ruminococcus sp.


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Waltera intestinalis


organism_name: Eubacteriales bacterium


organism_name: Blautia faecis


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Lachnospiraceae bacterium


organism_name: Treponema sp.


excluded_from_refseq: contaminated; derived from metagenome; genome length too small

organism_name: Ruminococcus bromii


organism_name: Treponema succinifaciens


organism_name: Paludibacteraceae bacterium


excluded_from_refseq: derived from metagenome


organism_name: Schaedlerella sp.


organism_name: Eubacterium sp.


organism_name: Prevotella sp.


organism_name: Succinivibrio sp.


organism_name: Gemmiger formicilis


organism_name: Coprococcus eutactus


organism_name: Prevotellamassilia timonensis


excluded_from_refseq: from large multi-isolate project

organism_name: Clostridium perfringens


organism_name: Romboutsia timonensis


organism_name: Agathobacter sp.


organism_name: Sutterella sp.


organism_name: Gemmiger sp.


organism_name: Alloprevotella sp.


organism_name: Faecalibacterium sp.


organism_name: Blautia sp.


organism_name: Lachnospiraceae bacterium


organism_name: Elusimicrobiaceae bacterium


organism_name: Pilosibacter sp.


organism_name: Collinsella sp.


organism_name: Prevotella sp.


organism_name: Phocaeicola sp.


organism_name: Campylobacter sp.


organism_name: Bifidobacterium longum


organism_name: Anaerovibrio sp.


organism_name: Escherichia coli


organism_name: Oscillospiraceae bacterium


organism_name: Faecousia sp.


organism_name: Bacilli bacterium


organism_name: Acinetobacter pseudolwoffii


organism_name: Phocaeicola plebeius


organism_name: Acutalibacteraceae bacterium


organism_name: Candidatus Alloenteromonas sp.


organism_name: Christensenellales bacterium


organism_name: Candidatus Merdousia sp.


organism_name: Treponema sp.


organism_name: Treponema berlinense


organism_name: Faecalibacterium sp.


organism_name: Victivallales bacterium


organism_name: Treponema succinifaciens


organism_name: Clostridium perfringens


organism_name: Elusimicrobiaceae bacterium


organism_name: Campylobacter sp.


organism_name: Eubacterium sp.


organism_name: Prevotella sp.


organism_name: Christensenellaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Agathobacter sp.


organism_name: Ruminiclostridium sp.


organism_name: Candidatus Fimenecus sp.


organism_name: Christensenellales bacterium


organism_name: Anaerovibrio sp.


organism_name: Kiritimatiellia bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Streptosporangiaceae bacterium


organism_name: Candidatus Merdousia sp.


organism_name: Treponema succinifaciens


organism_name: Clostridium algidicarnis


organism_name: Pseudomonas sp.


organism_name: Clostridium perfringens


organism_name: Mogibacterium sp.


organism_name: Clostridium sp.


organism_name: Peptostreptococcaceae bacterium


organism_name: Romboutsia hominis


organism_name: Clostridium moniliforme


organism_name: Microbacterium sp. F2


organism_name: Succinivibrio sp.


organism_name: Oscillospiraceae bacterium


organism_name: Christensenellales bacterium


organism_name: Barnesiella intestinihominis


organism_name: Mediterraneibacter torques


organism_name: Catenibacterium sp.


organism_name: Coprococcus sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Clostridia bacterium


organism_name: Eubacteriales bacterium


organism_name: Parabacteroides distasonis


organism_name: Eggerthellaceae bacterium


organism_name: Clostridium perfringens


organism_name: Candidatus Merdibacter merdipullorum


organism_name: Ruminococcus sp.


organism_name: Faecousia sp.


organism_name: Anaerostipes hadrus


organism_name: Eubacterium sp.


organism_name: Coprococcus eutactus


organism_name: Dorea longicatena


organism_name: Collinsella sp.


organism_name: Candidatus Scatocola faecigallinarum


organism_name: Phocaeicola coprocola


organism_name: Methanobrevibacter smithii


organism_name: Bacilli bacterium


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Ruminococcus bromii


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Acutalibacteraceae bacterium


organism_name: Christensenellales bacterium


organism_name: Gemmiger qucibialis


organism_name: Parabacteroides merdae


organism_name: Bacteroides uniformis


organism_name: Barnesiella intestinihominis


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes finegoldii


organism_name: Bifidobacterium longum


organism_name: Alistipes putredinis


organism_name: [Eubacterium] siraeum


organism_name: Dialister invisus


organism_name: Agathobacter rectalis


organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Alistipes avistercoris


organism_name: Collinsella sp.


organism_name: Clostridia bacterium


organism_name: Christensenellales bacterium


organism_name: Clostridium perfringens


organism_name: [Lactobacillus] rogosae


organism_name: Prevotella sp.


organism_name: Phocaeicola coprocola


organism_name: Acutalibacteraceae bacterium


organism_name: Eubacterium sp.


organism_name: Bacilli bacterium


organism_name: Dialister sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Holdemanella biformis


organism_name: Barnesiella intestinihominis


organism_name: Coprococcus sp.


organism_name: Phocaeicola vulgatus


organism_name: Dialister invisus


organism_name: Candidatus Fimenecus sp.


organism_name: Agathobacter rectalis


organism_name: Roseburia faecis


organism_name: Ruminococcus bromii


organism_name: Lachnospira sp.


organism_name: Oscillospiraceae bacterium


organism_name: Caecibacter sp.


organism_name: Christensenellales bacterium


organism_name: Candidatus Merdousia sp.


organism_name: Methanobrevibacter smithii


organism_name: Catenibacterium mitsuokai


organism_name: Muribaculaceae bacterium


organism_name: Paraprevotella clara


organism_name: Ruminococcus sp.


organism_name: Prevotella sp.


organism_name: Clostridium perfringens


organism_name: Anaeroplasmataceae bacterium


organism_name: Faecousia sp.


organism_name: Parabacteroides distasonis


organism_name: Agathobacter rectalis


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Lachnospira eligens


organism_name: [Lactobacillus] rogosae


organism_name: Candidatus Fimenecus sp.


organism_name: Eshraghiella crossota


organism_name: Dialister hominis


organism_name: Roseburia faecis


organism_name: Candidatus Limivicinus sp.


organism_name: Bifidobacterium adolescentis


organism_name: Eggerthellaceae bacterium


organism_name: Eubacterium ventriosum


organism_name: Fusicatenibacter saccharivorans


organism_name: Dorea longicatena


organism_name: Lachnospirales bacterium


organism_name: Clostridia bacterium


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Agathobaculum butyriciproducens


organism_name: Faecalibacterium prausnitzii


organism_name: Bifidobacterium bifidum


organism_name: Coprococcus sp.


organism_name: Bacteroides caccae


organism_name: Roseburia intestinalis


organism_name: Anaerobutyricum hallii


organism_name: Clostridium perfringens


organism_name: Gemmiger formicilis


organism_name: Sutterella wadsworthensis


organism_name: Thomasclavelia ramosa


organism_name: Blautia wexlerae


organism_name: Bifidobacterium longum


organism_name: Agathobacter rectalis


organism_name: Anaerostipes hadrus


organism_name: Eubacterium sp.


organism_name: Adlercreutzia sp.


organism_name: Dialister invisus


organism_name: Blautia faecis


organism_name: Ruminococcus sp.


organism_name: Ruminococcus bromii


organism_name: Christensenellales bacterium


organism_name: Clostridia bacterium


organism_name: Akkermansia sp.


organism_name: Bilophila wadsworthia


organism_name: Alistipes onderdonkii


organism_name: Escherichia coli


organism_name: Phocaeicola plebeius


organism_name: Lachnospiraceae bacterium


organism_name: Bifidobacterium bifidum


organism_name: Candidatus Fimivicinus sp.


organism_name: Alistipes putredinis


organism_name: Butyribacter sp.


organism_name: Clostridium perfringens


organism_name: Lachnospira eligens


organism_name: Fusicatenibacter saccharivorans


organism_name: Faecalibacillus intestinalis


organism_name: Agathobaculum butyriciproducens


organism_name: Bifidobacterium adolescentis


organism_name: Barnesiella intestinihominis


organism_name: Gemmiger qucibialis


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Parasutterella sp.


organism_name: Gemmiger formicilis


organism_name: Eggerthellaceae bacterium


organism_name: Anaerobutyricum hallii


organism_name: Clostridia bacterium


organism_name: Paramuribaculum sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Phocaeicola coprocola


organism_name: Eubacteriales bacterium


organism_name: Alistipes putredinis


organism_name: Muribaculaceae bacterium


organism_name: Bacilli bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Bacteroides uniformis


organism_name: Christensenellales bacterium


organism_name: Bifidobacterium longum


organism_name: Agathobacter rectalis


organism_name: Holdemanella biformis


organism_name: Ruminococcus sp.


organism_name: Collinsella sp.


organism_name: Prevotella sp.


organism_name: Catenibacterium mitsuokai


organism_name: Clostridium perfringens


organism_name: Angelakisella sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Gemmiger qucibialis


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Paraprevotella clara


organism_name: Alistipes communis


organism_name: Methanobrevibacter smithii


organism_name: Rikenellaceae bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Waltera intestinalis


asm_submitter: Guangdong University of Technology

infraspecific_name: strain=bq

organism_name: Cronobacter sakazakii


organism_name: Barnesiella intestinihominis


organism_name: Acutalibacteraceae bacterium


organism_name: Akkermansia muciniphila


organism_name: Faecousia sp.


organism_name: Candidatus Onthocola sp.


organism_name: Parabacteroides distasonis


organism_name: Eshraghiella crossota


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Eggerthellaceae bacterium


organism_name: Eubacteriales bacterium


organism_name: Faecalibacillus intestinalis


organism_name: Agathobacter rectalis


organism_name: Gemmiger qucibialis


organism_name: Coprococcus sp.


organism_name: Collinsella sp.


excluded_from_refseq: derived from metagenome; genome length too large

organism_name: Bacteroides uniformis


organism_name: Muribaculaceae bacterium


organism_name: Christensenellales bacterium


organism_name: Bacilli bacterium


organism_name: Candidatus Fimivicinus sp.


organism_name: Eubacterium sp.


asm_submitter: EEZ-CSIC

organism_name: Novosphingobium aeonii


organism_name: Clostridia bacterium


organism_name: Xylanibacter rarus


organism_name: Phocaeicola plebeius


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly; genome length too small

organism_name: Ruminococcus bromii


organism_name: [Eubacterium] siraeum


organism_name: Dialister invisus


organism_name: Alistipes putredinis


organism_name: [Lactobacillus] rogosae


organism_name: Faecalibacillus faecis


organism_name: Oscillospiraceae bacterium


organism_name: Lachnospira eligens


organism_name: Bacteroides uniformis


organism_name: Christensenellales bacterium


organism_name: Eshraghiella crossota


organism_name: Candidatus Fimivicinus sp.


organism_name: Eubacteriales bacterium


organism_name: Gemmiger qucibialis


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Candidatus Onthocola sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: Faecousia sp.


asm_submitter: University of New Brunswick

isolate: GLPC

organism_name: Microcoleus sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Eubacterium sp.


organism_name: Coprococcus sp.


organism_name: Lachnospiraceae bacterium


organism_name: Collinsella sp.


isolate: GLPB


organism_name: Parabacteroides distasonis


organism_name: Muribaculaceae bacterium


organism_name: Akkermansia muciniphila


organism_name: Waltera intestinalis


organism_name: Lachnospira sp.


organism_name: Christensenellales bacterium


organism_name: Agathobacter rectalis


organism_name: Barnesiella intestinihominis


organism_name: Faecalibacillus intestinalis


organism_name: Blautia sp.


organism_name: Oscillospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Holdemanella biformis


organism_name: Anaerostipes hadrus


organism_name: Dialister invisus


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome

organism_name: Ruminococcus sp.


organism_name: Candidatus Fimenecus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Alistipes onderdonkii


organism_name: Bifidobacterium longum


organism_name: Clostridium sp.


assembly_level: Chromosome

isolate: GLPA

organism_name: Microcoleus sp.


organism_name: Akkermansia sp.


organism_name: Eubacterium sp.


organism_name: Coprococcus sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Akkermansia muciniphila


organism_name: Dialister hominis


organism_name: Faecalibacterium sp.


organism_name: Coprococcus eutactus


organism_name: Bifidobacterium bifidum


asm_submitter: Synbiotic Health

organism_name: Limosilactobacillus reuteri


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Roseburia faecis


organism_name: Oscillospiraceae bacterium


organism_name: Agathobaculum butyriciproducens


organism_name: Bifidobacterium adolescentis


organism_name: Ruminococcus bromii


organism_name: Christensenellales bacterium


organism_name: Lachnospiraceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Gemmiger qucibialis


organism_name: Pseudoruminococcus massiliensis


organism_name: Bifidobacterium longum


organism_name: Blautia sp.


organism_name: Segatella buccae


organism_name: Ruminococcus sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Agathobacter rectalis


organism_name: Collinsella sp.


organism_name: Eubacterium sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined


asm_submitter: Faculty of Medicine, Prince of Songkla University

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Weissella paramesenteroides


organism_name: Akkermansia muciniphila


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Faecousia sp.


organism_name: Candidatus Alistipes merdipullorum


organism_name: Muribaculaceae bacterium


organism_name: Candidatus Limivicinus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Christensenellales bacterium


organism_name: Fusicatenibacter saccharivorans


organism_name: Candidatus Fimenecus sp.


organism_name: Phascolarctobacterium succinatutens


excluded_from_refseq: derived from metagenome; genome length too small; genus undefined

organism_name: [Clostridium] leptum


organism_name: Eggerthella lenta


organism_name: Pauljensenia sp.


organism_name: Candidatus Ventricola sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Gemmiger qucibialis


organism_name: Adlercreutzia equolifaciens subsp. celatus


organism_name: Collinsella sp.


organism_name: Eubacteriales bacterium


organism_name: Agathobacter rectalis


organism_name: Alistipes shahii


organism_name: Gemmiger formicilis


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Acutalibacter stercoravium


organism_name: Faecalibacterium prausnitzii


organism_name: Acutalibacteraceae bacterium


organism_name: Mediterraneibacter faecis


organism_name: Bifidobacterium longum


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Bifidobacterium adolescentis


organism_name: Agathobaculum butyriciproducens


organism_name: Lawsonibacter sp.


organism_name: Fusicatenibacter saccharivorans


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Dysosmobacter welbionis


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Blautia sp.


excluded_from_refseq: contaminated; derived from metagenome


organism_name: Eggerthella lenta


organism_name: Ruthenibacterium lactatiformans


organism_name: Gemmiger sp.


organism_name: Adlercreutzia equolifaciens


organism_name: Alistipes finegoldii


organism_name: Evtepia gabavorous


organism_name: Alistipes putredinis


organism_name: Gemmiger qucibialis


organism_name: Oscillospiraceae bacterium


organism_name: Bifidobacterium longum


organism_name: Agathobacter rectalis


organism_name: Faecalibacterium prausnitzii


organism_name: Acutalibacteraceae bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Collinsella sp.


organism_name: Dysosmobacter welbionis


organism_name: Eubacterium sp.


organism_name: Mediterraneibacter torques


organism_name: Bacteroides eggerthii


organism_name: Gemmiger formicilis


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Phascolarctobacterium faecium


organism_name: [Clostridium] leptum


organism_name: Fusicatenibacter saccharivorans


organism_name: Ruthenibacterium lactatiformans


organism_name: Lachnospiraceae bacterium


organism_name: Collinsella aerofaciens


organism_name: Lachnospira eligens


organism_name: Streptococcus thermophilus


organism_name: Ruminococcus bromii


organism_name: Alistipes shahii


organism_name: Faecalibacterium prausnitzii


excluded_from_refseq: derived from metagenome

organism_name: Candidatus Fimenecus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes putredinis


organism_name: Clostridia bacterium


organism_name: Blautia sp.


organism_name: [Ruminococcus] lactaris


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Agathobaculum sp.


organism_name: Candidatus Fimivicinus sp.


organism_name: Acidaminococcaceae bacterium


organism_name: Parabacteroides distasonis


organism_name: Angelakisella sp.


organism_name: [Clostridium] leptum


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Roseburia inulinivorans


organism_name: Faecalibacterium sp.


organism_name: [Clostridium] scindens


organism_name: Bacteroides uniformis


organism_name: Faecalibacterium prausnitzii


organism_name: Eubacterium sp.


organism_name: Alistipes finegoldii


organism_name: Faecousia sp.


organism_name: Candidatus Caccousia sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Oscillospiraceae bacterium


organism_name: Anaerotignum faecicola


organism_name: Lachnospiraceae bacterium


organism_name: Phocaeicola vulgatus


organism_name: Agathobacter rectalis


organism_name: Eggerthellaceae bacterium


organism_name: Gemmiger qucibialis


organism_name: Phascolarctobacterium sp.


organism_name: Mediterraneibacter torques


organism_name: Alistipes shahii


excluded_from_refseq: from large multi-isolate project

organism_name: Acinetobacter baumannii


asm_submitter: Center for Food Safety and Applied Nutrition

organism_name: Salmonella enterica


organism_name: Klebsiella pneumoniae


organism_name: Enterobacter roggenkampii


organism_name: Flavobacterium psychrophilum


organism_name: Campylobacter jejuni


organism_name: Escherichia coli


organism_name: Shigella sonnei


organism_name: Shigella flexneri


organism_name: Collinsella sp.


organism_name: Eubacteriaceae bacterium


organism_name: Agathobacter rectalis


organism_name: Eubacteriales bacterium


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Acutalibacteraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Oscillospiraceae bacterium


organism_name: Succinivibrio sp.


organism_name: Holdemanella porci


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Mediterraneibacter faecis


organism_name: Phascolarctobacterium succinatutens


organism_name: Streptococcus thermophilus


organism_name: Faecalibacterium sp.


organism_name: Catenibacterium sp.


organism_name: Christensenellales bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Fimenecus sp.


organism_name: [Clostridium] leptum


organism_name: Collinsella sp.


organism_name: Gemmiger qucibialis


organism_name: Faecalibacterium prausnitzii


organism_name: Dorea formicigenerans


organism_name: Bifidobacterium longum


organism_name: Oscillospiraceae bacterium


organism_name: Lachnospira eligens


organism_name: Ruminococcus bromii


organism_name: Collinsella aerofaciens


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Blautia faecicola


organism_name: Bifidobacterium bifidum


organism_name: Faecousia sp.


organism_name: Blautia sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Gemmiger formicilis


organism_name: Eubacterium sp.


organism_name: Candidatus Pseudobutyricicoccus sp.


organism_name: Anaerotignum faecicola


organism_name: Alistipes shahii


organism_name: Agathobacter rectalis


organism_name: Fusicatenibacter saccharivorans


organism_name: Lachnospiraceae bacterium


organism_name: Phascolarctobacterium faecium


organism_name: Bacteroides eggerthii


organism_name: Odoribacter splanchnicus


organism_name: Bacteroides uniformis


organism_name: Ruthenibacterium lactatiformans


organism_name: [Ruminococcus] lactaris


organism_name: Eggerthellaceae bacterium


organism_name: Candidatus Spyradocola sp.


organism_name: Streptococcus thermophilus


organism_name: Oscillospiraceae bacterium


organism_name: Agathobaculum sp.


organism_name: Collinsella bouchesdurhonensis


organism_name: Roseburia faecis


organism_name: Catenibacterium mitsuokai


organism_name: Gemmiger sp.


organism_name: Bifidobacterium longum


organism_name: Gemmiger formicilis


organism_name: Slackia isoflavoniconvertens


organism_name: Candidatus Acutalibacter stercoravium


organism_name: Phascolarctobacterium faecium


organism_name: Agathobacter rectalis


organism_name: Dysosmobacter sp.


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Senegalimassilia anaerobia


organism_name: Ruminococcus bromii


organism_name: Acinetobacter baumannii


organism_name: Bifidobacterium angulatum


organism_name: Eggerthellaceae bacterium


organism_name: Bifidobacterium catenulatum


organism_name: Evtepia gabavorous


organism_name: Gemmiger qucibialis


organism_name: Acutalibacteraceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Ventricola sp.


organism_name: Ruminococcus callidus


organism_name: Candidatus Fimadaptatus sp.


organism_name: Angelakisella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Coriobacteriales bacterium


organism_name: Candidatus Limiplasma sp.


organism_name: Christensenellales bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: Candidatus Pseudobutyricicoccus sp.


organism_name: Collinsella sp.


organism_name: Alistipes communis


organism_name: Bifidobacterium adolescentis


organism_name: Candidatus Faecimonas sp.


organism_name: Candidatus Fimivicinus sp.


organism_name: Alistipes finegoldii


organism_name: Alistipes putredinis


organism_name: [Clostridium] leptum


organism_name: [Clostridium] scindens


organism_name: Bacteroides uniformis


organism_name: Acinetobacter baumannii


organism_name: Escherichia coli


organism_name: Fusicatenibacter saccharivorans


organism_name: Oscillospiraceae bacterium


organism_name: Anaerotignum faecicola


organism_name: Lachnospiraceae bacterium


organism_name: Roseburia faecis


organism_name: Blautia sp.


asm_submitter: Vet-LIRN-CVM-FDA

organism_name: Salmonella enterica subsp. enterica serovar Brandenburg


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Alistipes shahii


asm_submitter: FDA Center for Food Safety and Applied Nutrition

organism_name: Cronobacter sakazakii


organism_name: [Ruminococcus] lactaris


organism_name: Cronobacter malonaticus


organism_name: Campylobacter jejuni


organism_name: Phocaeicola vulgatus


organism_name: [Clostridium] leptum


organism_name: Listeria monocytogenes


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Enterococcus faecalis


organism_name: Faecalibacterium prausnitzii


organism_name: Acutalibacteraceae bacterium


organism_name: Enterococcus hirae


organism_name: Lachnospiraceae bacterium


organism_name: Enterococcus faecium


organism_name: Faecousia sp.


organism_name: Eubacterium sp.


organism_name: Cronobacter muytjensii


organism_name: Cronobacter sakazakii


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Aphodocola sp.


organism_name: Salmonella enterica subsp. enterica serovar Muenster


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Dialister sp.


organism_name: Salmonella enterica subsp. enterica serovar Johannesburg


organism_name: Akkermansia muciniphila


organism_name: Enterococcus faecalis


organism_name: Prevotella sp.


organism_name: Faecalibacterium sp.


organism_name: Catenibacterium mitsuokai


organism_name: Enterococcus hirae


organism_name: Christensenellales bacterium


organism_name: Candidatus Avispirillum sp.


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Acinetobacter baumannii


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly; genome length too small

organism_name: Oliverpabstia intestinalis


organism_name: Oscillospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Muribaculaceae bacterium


organism_name: Candidatus Fimenecus sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Faecousia sp.


organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Limivicinus sp.


organism_name: Candidatus Alistipes merdipullorum


organism_name: Ruminococcus bromii


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Butyricicoccaceae bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Serratia marcescens


organism_name: Christensenellales bacterium


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Collinsella sp.


organism_name: Akkermansia muciniphila


organism_name: Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7)


organism_name: Candidatus Spyradocola sp.


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Oscillospiraceae bacterium


organism_name: Phascolarctobacterium succinatutens


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica serovar Glostrup


organism_name: Candidatus Limiplasma sp.


organism_name: Lachnospiraceae bacterium


organism_name: Salmonella enterica subsp. diarizonae serovar 21:z10:e,n,x,z15


organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


organism_name: Lachnospira eligens


organism_name: Eubacterium sp.


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Faecalibacterium sp.


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Adlercreutzia equolifaciens subsp. celatus


organism_name: Faecalibacterium prausnitzii


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Cronobacter malonaticus


organism_name: Gemmiger qucibialis


organism_name: Oscillospiraceae bacterium


organism_name: Cronobacter sakazakii


organism_name: Alistipes shahii


organism_name: Dysosmobacter welbionis


organism_name: Dysosmobacter sp.


organism_name: Gemmiger formicilis


organism_name: Agathobacter rectalis


organism_name: Collinsella sp.


organism_name: Candidatus Acutalibacter stercoravium


organism_name: Fusicatenibacter saccharivorans


organism_name: Acutalibacteraceae bacterium


organism_name: Candidatus Faecimonas sp.


organism_name: Ruminococcus sp.


organism_name: Agathobaculum butyriciproducens


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Enterococcus faecium


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Oscillospiraceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Enterococcus faecalis


organism_name: Bacteroides uniformis


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Dysosmobacter welbionis


organism_name: Faecalibacterium prausnitzii


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Bifidobacterium longum


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Alistipes shahii


organism_name: Salmonella enterica subsp. enterica serovar Muenchen


organism_name: Ruthenibacterium lactatiformans


organism_name: Agathobacter rectalis


organism_name: Yersinia enterocolitica


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Flavonifractor plautii


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Lachnospira eligens


organism_name: Bifidobacterium adolescentis


organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Bacteroides ovatus


organism_name: Lawsonibacter sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Streptococcus pyogenes


organism_name: Gemmiger sp.


organism_name: Blautia sp.


organism_name: Citrobacter freundii


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Agathobaculum butyriciproducens


organism_name: Gemmiger qucibialis


organism_name: Dysosmobacter sp.


organism_name: Acinetobacter baumannii


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Alistipes putredinis


organism_name: Escherichia coli


organism_name: Roseburia faecis


organism_name: Enterobacter hormaechei


organism_name: Cronobacter sakazakii


organism_name: Ruminococcus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Klebsiella pneumoniae


organism_name: Akkermansia muciniphila


organism_name: Blautia sp.


organism_name: Listeria monocytogenes


organism_name: Bifidobacterium longum


organism_name: Agathobacter rectalis


organism_name: Fusicatenibacter saccharivorans


organism_name: Lawsonibacter sp.


organism_name: Mediterraneibacter faecis


organism_name: Acinetobacter baumannii


organism_name: Agathobaculum butyriciproducens


organism_name: Eggerthella lenta


organism_name: Klebsiella oxytoca


organism_name: Gemmiger sp.


organism_name: Enterobacter hormaechei


organism_name: Collinsella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Ruthenibacterium lactatiformans


organism_name: Klebsiella pneumoniae


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes putredinis


organism_name: Anaerostipes hadrus


organism_name: Clostridia bacterium


organism_name: Pseudomonas aeruginosa


organism_name: Alistipes onderdonkii


organism_name: Coprococcus sp.


organism_name: Faecousia sp.


organism_name: Agathobacter rectalis


organism_name: Escherichia coli


organism_name: Acinetobacter baumannii


organism_name: Angelakisella sp.


organism_name: Enterobacter hormaechei


organism_name: Collinsella sp.


organism_name: Evtepia gabavorous


organism_name: Desulfovibrio sp.


organism_name: Gemmiger formicilis


organism_name: Candidatus Limiplasma sp.


organism_name: Klebsiella pneumoniae


organism_name: Acutalibacteraceae bacterium


organism_name: Alistipes putredinis


organism_name: Oscillospiraceae bacterium


organism_name: Klebsiella michiganensis


organism_name: Gemmiger qucibialis


organism_name: Candidatus Ventricola sp.


organism_name: Clostridia bacterium


organism_name: Proteus mirabilis


organism_name: Acinetobacter baumannii


organism_name: Ellagibacter isourolithinifaciens


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Faecalibacterium prausnitzii


organism_name: Escherichia coli


organism_name: Alistipes shahii


organism_name: Collinsella sp.


organism_name: Adlercreutzia equolifaciens


organism_name: Campylobacter jejuni


organism_name: Vibrio vulnificus


organism_name: Alistipes putredinis


organism_name: Bifidobacterium longum


organism_name: Enterobacter hormaechei


organism_name: Faecalibacterium sp.


organism_name: Oscillospiraceae bacterium


organism_name: Bifidobacterium adolescentis


organism_name: Agathobacter rectalis


organism_name: Klebsiella pneumoniae


organism_name: Pseudomonas aeruginosa


organism_name: Shigella sonnei


organism_name: Clostridia bacterium


organism_name: Vibrio cholerae


organism_name: Gemmiger qucibialis


organism_name: Yersinia enterocolitica


organism_name: Senegalimassilia anaerobia


organism_name: Escherichia coli


isolate: Burkholderiacenocepacia

organism_name: Burkholderia cenocepacia


organism_name: Coriobacteriales bacterium


organism_name: Candidatus Limiplasma sp.


organism_name: Candidatus Ventricola sp.


organism_name: Gemmiger formicilis


organism_name: Eggerthellaceae bacterium


organism_name: Bacilli bacterium


organism_name: Slackia isoflavoniconvertens


organism_name: Faecalibacterium sp.


organism_name: Adlercreutzia sp.


organism_name: Candidatus Faecimonas sp.


organism_name: Agathobacter rectalis


organism_name: Acutalibacteraceae bacterium


organism_name: Clostridia bacterium


organism_name: Bacteroides uniformis


organism_name: Oscillospiraceae bacterium


organism_name: Bifidobacterium longum


organism_name: Roseburia faecis


organism_name: Blautia sp.


organism_name: Burkholderia cenocepacia


organism_name: Ruminococcus sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Waltera intestinalis


organism_name: Phocaeicola vulgatus


organism_name: Candidatus Fimenecus sp.


organism_name: Akkermansia muciniphila


organism_name: Lachnospiraceae bacterium


organism_name: Gemmiger qucibialis


organism_name: Alistipes putredinis


organism_name: Dialister hominis


organism_name: Acutalibacteraceae bacterium


organism_name: Flavobacterium psychrophilum


organism_name: Escherichia coli


organism_name: Clostridia bacterium


organism_name: Prevotella sp.


organism_name: Bifidobacterium adolescentis


organism_name: Vibrio alginolyticus


organism_name: Faecalibacterium prausnitzii


isolate: clinical

organism_name: Acinetobacter baumannii


organism_name: Burkholderia cenocepacia


organism_name: Alistipes inops


organism_name: Waltera intestinalis


organism_name: Agathobacter rectalis


organism_name: Edwardsiella tarda


organism_name: Vibrio vulnificus


organism_name: Paraprevotella clara


organism_name: Fusicatenibacter saccharivorans


organism_name: Gemmiger qucibialis


organism_name: Blautia sp.


organism_name: Ruminococcus callidus


organism_name: Oscillospiraceae bacterium


organism_name: Shigella sonnei


organism_name: Roseburia faecis


organism_name: Flavobacterium psychrophilum


organism_name: Bacteroides uniformis


organism_name: Christensenellales bacterium


asm_submitter: Washington State Department of Agriculture GenomeTrakr submission group

organism_name: Escherichia coli


organism_name: Mediterraneibacter torques


asm_submitter: CDC


organism_name: Vibrio harveyi


organism_name: Megasphaera sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Vibrio cholerae


organism_name: Campylobacter jejuni


organism_name: Roseburia intestinalis


organism_name: Mediterraneibacter faecis


excluded_from_refseq: derived from metagenome; genome length too large

organism_name: Holdemanella porci


organism_name: Acidaminococcus intestini


organism_name: Collinsella sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Oliverpabstia intestinalis


organism_name: [Clostridium] leptum


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Agathobacter rectalis


organism_name: Faecalibacterium sp.


organism_name: Candidatus Fimenecus sp.


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Angelakisella sp.


organism_name: Campylobacter upsaliensis


organism_name: Phascolarctobacterium succinatutens


organism_name: Ruminococcus bromii


organism_name: Shigella flexneri


organism_name: Alistipes putredinis


organism_name: Acutalibacteraceae bacterium


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides uniformis


organism_name: Oscillospiraceae bacterium


organism_name: Roseburia faecis


organism_name: Gemmiger qucibialis


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Alistipes onderdonkii


organism_name: Clostridia bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Lachnospiraceae bacterium


organism_name: [Ruminococcus] lactaris


organism_name: Blautia sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Collinsella sp.


organism_name: Dialister invisus


organism_name: Waltera intestinalis


organism_name: Fusicatenibacter saccharivorans


organism_name: Bifidobacterium adolescentis


organism_name: Dialister sp.


organism_name: Eggerthellaceae bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Anaerotignum faecicola


organism_name: Ellagibacter isourolithinifaciens


organism_name: Bacteroidaceae bacterium


organism_name: Barnesiella intestinihominis


organism_name: Christensenellales bacterium


organism_name: Angelakisella sp.


organism_name: Eubacteriales bacterium


organism_name: Bacteroides uniformis


organism_name: Escherichia coli


organism_name: Gemmiger formicilis


organism_name: Clostridia bacterium


organism_name: Blautia sp.


organism_name: Candidatus Fimenecus sp.


organism_name: Slackia isoflavoniconvertens


organism_name: Eubacterium sp.


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Ruminococcus bromii


organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Spyradocola sp.


organism_name: Oscillospiraceae bacterium


organism_name: Prevotella sp.


organism_name: Christensenellales bacterium


organism_name: Candidatus Limivicinus sp.


organism_name: Prevotella pectinovora


organism_name: Fusicatenibacter saccharivorans


organism_name: Agathobacter rectalis


organism_name: Acutalibacteraceae bacterium


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Lawsonibacter sp.


organism_name: Dysosmobacter welbionis


organism_name: Mediterraneibacter faecis


organism_name: Mediterraneibacter torques


organism_name: Collinsella sp.


organism_name: Mediterraneibacter gnavus


organism_name: Ruminococcus sp.


organism_name: Eggerthellaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Clostridia bacterium


organism_name: Eubacteriaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Phascolarctobacterium faecium


organism_name: Ruminococcus bromii


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Alistipes inops


organism_name: Dorea formicigenerans


organism_name: Faecalibacterium sp.


organism_name: Blautia wexlerae


organism_name: Fusicatenibacter saccharivorans


organism_name: Gemmiger qucibialis


organism_name: Candidatus Fimenecus sp.


organism_name: Bifidobacterium adolescentis


organism_name: Roseburia faecis


organism_name: Acutalibacteraceae bacterium


organism_name: Waltera intestinalis


organism_name: Coprococcus sp.


organism_name: Lachnospiraceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Roseburia hominis


organism_name: Collinsella sp.


organism_name: Enterobacter hormaechei


organism_name: Eubacterium sp.


organism_name: Prevotellaceae bacterium


organism_name: Coprococcus eutactus


organism_name: Ruminococcus sp.


organism_name: Agathobacter rectalis


organism_name: Dorea longicatena


organism_name: Dialister hominis


organism_name: Desulfovibrio legallii


organism_name: Christensenellales bacterium


organism_name: Candidatus Ventricola sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Catenibacterium sp.


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Waltera intestinalis


organism_name: Candidatus Fimenecus sp.


organism_name: Eshraghiella crossota


organism_name: Succinivibrio sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Holdemanella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Haemophilus sp.


organism_name: Slackia isoflavoniconvertens


organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Agathobacter rectalis


organism_name: Bacteroides sp.


organism_name: Collinsella intestinalis


organism_name: Ruminococcus sp.


organism_name: Akkermansia muciniphila


organism_name: [Bacteroides] pectinophilus


organism_name: Ruminiclostridium sp.


organism_name: Phascolarctobacterium faecium


organism_name: Christensenellales bacterium


organism_name: Alistipes putredinis


organism_name: Barnesiella intestinihominis


organism_name: Oscillospiraceae bacterium


organism_name: Phocaeicola dorei


organism_name: Candidatus Fimenecus sp.


organism_name: Bifidobacterium adolescentis


organism_name: Lachnospiraceae bacterium


organism_name: [Ruminococcus] lactaris


organism_name: Agathobacter rectalis


organism_name: Faecalibacillus intestinalis


organism_name: Clostridia bacterium


organism_name: Roseburia faecis


organism_name: Sodaliphilus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Fusicatenibacter saccharivorans


organism_name: Bifidobacterium longum


organism_name: Collinsella sp.


organism_name: Dorea sp.


organism_name: Mediterraneibacter faecis


organism_name: Eubacterium sp.


organism_name: Roseburia intestinalis


organism_name: Prevotella sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Gemmiger qucibialis


organism_name: Agathobaculum butyriciproducens


organism_name: Ruminococcus callidus


organism_name: [Clostridium] leptum


organism_name: Ruminococcus bromii


organism_name: Anaerostipes hadrus


organism_name: Faecalibacterium prausnitzii


organism_name: Paraprevotella clara


organism_name: Clostridia bacterium


organism_name: Blautia faecis


organism_name: Lachnospirales bacterium


organism_name: Clostridium fessum


organism_name: Allocoprococcus comes


organism_name: Lachnospiraceae bacterium


organism_name: Anaerobutyricum hallii


organism_name: Ruminococcus sp.


organism_name: Eubacterium ventriosum


organism_name: Agathobacter rectalis


organism_name: Lachnospira sp.


organism_name: Gemmiger formicilis


organism_name: Segatella copri


organism_name: Catenibacterium sp.


organism_name: Faecalibacterium sp.


organism_name: Phocaeicola plebeius


organism_name: Oscillospiraceae bacterium


organism_name: Anaerostipes hadrus


organism_name: Holdemanella porci


organism_name: Lachnospira eligens


organism_name: Phascolarctobacterium faecium


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Clostridia bacterium


organism_name: Collinsella sp.


organism_name: Streptococcus thermophilus


organism_name: Ruminococcus sp.


organism_name: Lachnospiraceae bacterium


organism_name: Succinivibrio sp.


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Agathobacter rectalis


organism_name: Acutalibacteraceae bacterium


organism_name: Dorea longicatena


organism_name: Roseburia faecis


organism_name: Candidatus Limivicinus sp.


organism_name: Candidatus Onthocola sp.


organism_name: Angelakisella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Holdemanella biformis


organism_name: Eggerthellaceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Bifidobacterium adolescentis


organism_name: Bifidobacterium longum


organism_name: Candidatus Spyradocola sp.


organism_name: Candidatus Acutalibacter stercoravium


organism_name: Slackia isoflavoniconvertens


organism_name: Gemmiger formicilis


organism_name: Agathobacter rectalis


organism_name: Coriobacteriales bacterium


organism_name: Collinsella bouchesdurhonensis


organism_name: Senegalimassilia anaerobia


organism_name: Candidatus Limiplasma sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Catenibacterium mitsuokai


organism_name: Agathobaculum sp.


organism_name: Gemmiger qucibialis


organism_name: Candidatus Fimadaptatus sp.


organism_name: Evtepia gabavorous


organism_name: Eubacterium sp.


organism_name: Oscillospiraceae bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Agathobacter sp.


organism_name: Megasphaera sp.


organism_name: Candidatus Faecimonas sp.


organism_name: Collinsella sp.


organism_name: Gemmiger sp.


organism_name: Roseburia inulinivorans


organism_name: Gemmiger formicilis


organism_name: Bacteroidaceae bacterium


organism_name: Barnesiella intestinihominis


organism_name: Lachnospiraceae bacterium


excluded_from_refseq: derived from metagenome; genome length too small; genus undefined

organism_name: [Clostridium] leptum


organism_name: Angelakisella sp.


organism_name: Clostridia bacterium


organism_name: Prevotella pectinovora


organism_name: Eubacterium sp.


organism_name: Prevotella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Roseburia faecis


organism_name: Dialister sp.


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Agathobacter rectalis


organism_name: Bifidobacterium adolescentis


organism_name: Fusicatenibacter saccharivorans


organism_name: Collinsella sp.


organism_name: Eggerthellaceae bacterium


organism_name: Candidatus Fimenecus sp.


organism_name: Eubacterium ramulus


organism_name: Faecalibacterium sp.


organism_name: Alistipes inops


organism_name: Ruminococcus bromii


organism_name: Mediterraneibacter faecis


organism_name: Candidatus Evtepia excrementipullorum


organism_name: Bifidobacterium longum


organism_name: Acutalibacteraceae bacterium


organism_name: Mediterraneibacter gnavus


organism_name: Blautia wexlerae


organism_name: Blautia sp.


organism_name: Agathobacter rectalis


organism_name: Ruthenibacterium lactatiformans


organism_name: Anaerostipes hadrus


organism_name: Phascolarctobacterium faecium


organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Fimenecus sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Lachnospira eligens


organism_name: Oscillospiraceae bacterium


organism_name: Clostridia bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Campylobacter jejuni


organism_name: Acinetobacter baumannii


organism_name: Eubacteriales bacterium


organism_name: Phascolarctobacterium succinatutens


organism_name: Eubacterium sp.


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Ruminococcus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Agathobacter rectalis


organism_name: [Clostridium] leptum


organism_name: Catenibacterium sp.


organism_name: Succinivibrio sp.


organism_name: Prevotella sp.


organism_name: Collinsella aerofaciens


organism_name: Odoribacter splanchnicus


organism_name: Coprococcus sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Roseburia faecis


organism_name: Lachnospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Mediterraneibacter faecis


organism_name: Holdemanella porci


organism_name: Clostridia bacterium


organism_name: Gemmiger qucibialis


organism_name: Eubacterium sp.


organism_name: Slackia isoflavoniconvertens


excluded_from_refseq: contaminated; derived from metagenome; genome length too small


organism_name: Prevotellamassilia timonensis


organism_name: Mediterraneibacter torques


organism_name: Candidatus Fimenecus sp.


organism_name: Acinetobacter baumannii


organism_name: Fusicatenibacter saccharivorans


organism_name: Streptococcus thermophilus


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Ruminococcus bromii


excluded_from_refseq: derived from metagenome


organism_name: Phascolarctobacterium faecium


organism_name: Roseburia intestinalis


organism_name: Escherichia coli


organism_name: Citrobacter koseri


organism_name: Lachnospira sp.


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Lachnospira eligens


organism_name: Oscillospiraceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Eubacterium sp.


organism_name: [Clostridium] leptum


organism_name: Clostridium fessum


organism_name: Agathobacter rectalis


organism_name: Bifidobacterium longum


organism_name: Acinetobacter baumannii


organism_name: Bacteroides eggerthii


organism_name: Bifidobacterium animalis


organism_name: Gemmiger formicilis


organism_name: [Ruminococcus] lactaris


organism_name: Faecalibacterium prausnitzii


organism_name: Dorea longicatena


organism_name: Bacteroides uniformis


organism_name: Clostridia bacterium


organism_name: Collinsella aerofaciens


organism_name: Blautia faecicola


organism_name: Ruthenibacterium lactatiformans


organism_name: Acidaminococcaceae bacterium


organism_name: Candidatus Fimivicinus sp.


organism_name: Candidatus Caccousia sp.


organism_name: Alistipes putredinis


organism_name: Ruminococcus sp.


organism_name: Acinetobacter baumannii


organism_name: Candidatus Fimenecus sp.


organism_name: Klebsiella pneumoniae


organism_name: Eisenbergiella tayi


organism_name: Angelakisella sp.


organism_name: Clostridium sp.


organism_name: Eggerthellaceae bacterium


organism_name: Sellimonas intestinalis


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Candidatus Acutalibacter ornithocaccae


organism_name: Akkermansia sp.


organism_name: Dysosmobacter welbionis


organism_name: Alistipes finegoldii


organism_name: Bacteroides ovatus


organism_name: Bifidobacterium longum


organism_name: Christensenellales bacterium


organism_name: Bacteroides uniformis


organism_name: Dorea formicigenerans


organism_name: Eubacterium sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Bacteroides stercoris


organism_name: Lawsonibacter sp.


organism_name: Lachnospiraceae bacterium


organism_name: Collinsella intestinalis


organism_name: Oscillospiraceae bacterium


organism_name: Blautia sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Phascolarctobacterium sp.


organism_name: Agathobacter rectalis


organism_name: Anaerotignum faecicola


organism_name: Dysosmobacter sp.


organism_name: Clostridia bacterium


organism_name: Collinsella sp.


organism_name: [Clostridium] leptum


organism_name: Ruminococcus callidus


organism_name: Blautia obeum


organism_name: Evtepia gabavorous


organism_name: Eubacteriales bacterium


organism_name: Mediterraneibacter torques


organism_name: Faecousia sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Butyribacter intestini


organism_name: Phocaeicola vulgatus


organism_name: Roseburia faecis


organism_name: [Ruminococcus] lactaris


organism_name: Oscillospiraceae bacterium


organism_name: Dorea sp.


organism_name: Candidatus Fimenecus sp.


organism_name: Bifidobacterium adolescentis


organism_name: Blautia sp.


organism_name: Ruminococcus bromii


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Lachnospiraceae bacterium


organism_name: Gemmiger qucibialis


organism_name: Butyribacter sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Roseburia hominis


organism_name: Dialister invisus


organism_name: Bifidobacterium longum


organism_name: Blautia faecis


organism_name: Gemmiger sp.


organism_name: Bacteroides ovatus


organism_name: Lawsonibacter sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Agathobacter rectalis


organism_name: Flavonifractor plautii


organism_name: Faecalibacterium prausnitzii


organism_name: Dysosmobacter sp.


organism_name: Alistipes shahii


organism_name: Oscillospiraceae bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: Gemmiger formicilis


organism_name: Bifidobacterium adolescentis


organism_name: Blautia sp.


organism_name: Anaerostipes hadrus


organism_name: Lachnospiraceae bacterium


organism_name: Agathobaculum butyriciproducens


organism_name: [Clostridium] leptum


organism_name: Clostridia bacterium


organism_name: Mediterraneibacter faecis


organism_name: Collinsella sp.


organism_name: Gemmiger sp.


organism_name: Paraprevotella clara


organism_name: Dysosmobacter welbionis


organism_name: Bacteroides uniformis


organism_name: [Ruminococcus] lactaris


organism_name: Alistipes putredinis


organism_name: Eggerthella lenta


organism_name: Roseburia faecis


organism_name: Ruthenibacterium lactatiformans


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Acutalibacteraceae bacterium


organism_name: Bifidobacterium bifidum


organism_name: Evtepia gabavorous


organism_name: Ellagibacter isourolithinifaciens


organism_name: Alistipes shahii


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes onderdonkii


organism_name: Gemmiger formicilis


organism_name: Gemmiger qucibialis


organism_name: Oscillospiraceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Candidatus Limiplasma sp.


organism_name: Desulfovibrio sp.


organism_name: Eggerthellaceae bacterium


organism_name: Collinsella sp.


organism_name: Catenibacterium mitsuokai


organism_name: Blautia sp.


organism_name: Clostridia bacterium


organism_name: Alistipes putredinis


organism_name: Angelakisella sp.


organism_name: Candidatus Ventricola sp.


organism_name: Agathobacter rectalis


organism_name: Coprococcus sp.


organism_name: Bifidobacterium adolescentis


organism_name: Eubacteriales bacterium


organism_name: Gemmiger qucibialis


organism_name: Oscillospiraceae bacterium


organism_name: Ruminococcus sp.


organism_name: Faecalibacterium sp.


organism_name: Prevotella sp.


organism_name: Bifidobacterium longum


organism_name: Eubacterium sp.


organism_name: Dialister sp.


organism_name: Eggerthellaceae bacterium


organism_name: Fusicatenibacter saccharivorans


organism_name: Prevotella pectinovora


organism_name: Haemophilus sp.


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Roseburia faecis


organism_name: Slackia isoflavoniconvertens


organism_name: Agathobacter rectalis


organism_name: Candidatus Fimenecus sp.


organism_name: Blautia faecis


organism_name: Phocaeicola vulgatus


organism_name: Butyribacter sp.


organism_name: Ruminococcus bromii


organism_name: Oscillospiraceae bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Alistipes inops


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: [Clostridium] leptum


organism_name: Mediterraneibacter faecis


organism_name: Anaerostipes hadrus


organism_name: Clostridia bacterium


organism_name: Ruminococcus sp.


organism_name: Blautia sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Faecalibacterium sp.


organism_name: Christensenellales bacterium


organism_name: Mediterraneibacter gnavus


organism_name: Phascolarctobacterium faecium


organism_name: Waltera intestinalis


organism_name: Slackia isoflavoniconvertens


organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Limiplasma sp.


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes putredinis


organism_name: [Clostridium] leptum


organism_name: Alistipes shahii


organism_name: Mediterraneibacter torques


organism_name: Phocaeicola vulgatus


organism_name: Gemmiger formicilis


organism_name: Fusicatenibacter sp.


organism_name: Alistipes communis


organism_name: Candidatus Coprovivens sp.


organism_name: Phocaeicola dorei


organism_name: Ruminococcus sp.


organism_name: [Ruminococcus] lactaris


organism_name: Roseburia sp.


organism_name: Agathobacter sp.


organism_name: Rikenellaceae bacterium


organism_name: Candidatus Fimenecus sp.


organism_name: Faecousia sp.


organism_name: Eshraghiella crossota


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroides uniformis


organism_name: Christensenellales bacterium


organism_name: Roseburia faecis


organism_name: Dysosmobacter sp.


organism_name: Coprococcus sp.


organism_name: [Bacteroides] pectinophilus


organism_name: Phascolarctobacterium faecium


organism_name: Agathobacter rectalis


organism_name: Lachnospiraceae bacterium


organism_name: Ruminococcus callidus


organism_name: Dorea longicatena


organism_name: Alistipes indistinctus


organism_name: Anaerostipes hadrus


organism_name: Ruminococcus bromii


organism_name: Blautia sp.


organism_name: Streptococcus thermophilus


organism_name: Phocaeicola vulgatus


organism_name: Alistipes putredinis


organism_name: [Ruminococcus] lactaris


organism_name: Christensenellales bacterium


organism_name: Phocaeicola coprocola


organism_name: Odoribacter splanchnicus


organism_name: Ruminococcus sp.


organism_name: Roseburia hominis


organism_name: Candidatus Limivicinus sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Eubacterium sp.


organism_name: Holdemanella porci


organism_name: Candidatus Limisoma sp.


organism_name: Oscillospiraceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Acutalibacteraceae bacterium


organism_name: Lachnospira eligens


organism_name: [Lactobacillus] rogosae


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Bacilli bacterium


organism_name: Bifidobacterium angulatum


organism_name: Fusicatenibacter saccharivorans


organism_name: Dorea sp.


organism_name: Angelakisella sp.


organism_name: Phascolarctobacterium faecium


organism_name: Gemmiger qucibialis


organism_name: Segatella copri


organism_name: Paraprevotella xylaniphila


organism_name: Mediterraneibacter torques


organism_name: Eubacterium sp.


organism_name: Bacteroides stercoris


organism_name: Dorea formicigenerans


organism_name: Dialister hominis


organism_name: Faecalibacterium prausnitzii


organism_name: Ruminococcus bromii


organism_name: Lachnospiraceae bacterium


organism_name: Mediterraneibacter faecis


organism_name: Prevotella sp.


organism_name: Oscillospiraceae bacterium


organism_name: Clostridia bacterium


organism_name: Roseburia faecis


organism_name: Roseburia intestinalis


organism_name: Phocaeicola coprophilus


organism_name: Fusicatenibacter saccharivorans


organism_name: Alistipes putredinis


organism_name: [Ruminococcus] lactaris


organism_name: Bifidobacterium adolescentis


organism_name: Ruminococcus callidus


organism_name: Blautia wexlerae


organism_name: Gemmiger formicilis


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Roseburia inulinivorans


organism_name: Acutalibacteraceae bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Collinsella sp.


organism_name: Agathobacter rectalis


organism_name: Bifidobacterium longum


organism_name: Lachnospiraceae bacterium


organism_name: Gemmiger qucibialis


organism_name: Eubacterium sp.


organism_name: Sodaliphilus sp.


organism_name: Anaerostipes hadrus


organism_name: [Clostridium] leptum


organism_name: Blautia sp.


organism_name: Holdemanella porci


organism_name: Phocaeicola plebeius


organism_name: Segatella copri


organism_name: Catenibacterium sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Acutalibacteraceae bacterium


organism_name: Faecousia sp.


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Prevotella sp.


organism_name: Holdemanella biformis


organism_name: Candidatus Limivicinus sp.


organism_name: Bacilli bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: [Bacteroides] pectinophilus


organism_name: Butyrivibrio sp.


organism_name: Bifidobacterium adolescentis


organism_name: Agathobacter rectalis


organism_name: Eubacterium sp.


organism_name: Dialister sp.


organism_name: Candidatus Onthocola sp.


organism_name: Candidatus Limisoma sp.


organism_name: Mediterraneibacter faecis


organism_name: Catenibacterium mitsuokai


organism_name: Akkermansia muciniphila


organism_name: Succinivibrio sp.


organism_name: Ruminococcus sp.


organism_name: Collinsella sp.


organism_name: Ligilactobacillus ruminis


organism_name: Gemmiger qucibialis


organism_name: Faecalibacterium sp.


organism_name: Tractidigestivibacter sp.


organism_name: [Clostridium] leptum


organism_name: Faecalibacterium prausnitzii


organism_name: Roseburia faecis


organism_name: Ruminococcus callidus


organism_name: Phascolarctobacterium succinatutens


organism_name: Bacteroides uniformis


organism_name: Mediterraneibacter torques


organism_name: Holdemanella porci


organism_name: Agathobacter rectalis


organism_name: Alistipes putredinis


organism_name: Oscillospiraceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Acidaminococcus intestini


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Christensenellales bacterium


organism_name: Paraprevotella clara


organism_name: Acutalibacteraceae bacterium


organism_name: Fusicatenibacter saccharivorans