annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

assembly_level: Contig

assembly_type: haploid

excluded_from_refseq: from large multi-isolate project

genome_rep: Full

group: bacteria

organism_name: Pseudomonas aeruginosa

release_type: Major

version_status: latest


organism_name: Klebsiella pneumoniae


asm_submitter: Nofima

organism_name: Carnobacterium divergens

paired_asm_comp: identical


organism_name: Enterobacter hormaechei


organism_name: Acinetobacter baumannii


organism_name: Enterobacter roggenkampii


organism_name: Klebsiella michiganensis


asm_submitter: Elizade University

excluded_from_refseq: abnormal gene to sequence ratio; annotation fails MAG completeness check; derived from metagenome

organism_name: Pseudoxanthomonas spadix


asm_submitter: National Yang Ming Chiao Tung University

assembly_level: Complete Genome

organism_name: Acinetobacter nosocomialis


organism_name: Acinetobacter soli


organism_name: Acinetobacter variabilis


asm_submitter: Public Health England

organism_name: Campylobacter jejuni


organism_name: Escherichia coli


asm_submitter: Chung-Ang university

organism_name: Bacillus velezensis


organism_name: Bacillus sonorensis


organism_name: Bacillus licheniformis


asm_submitter: Zhejiang University

excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Thermodesulfovibrionales bacterium


organism_name: Anaerohalosphaeraceae bacterium


organism_name: Bacteroidota bacterium


group: archaea

organism_name: Thermoplasmatota archaeon


organism_name: Bacteroidia bacterium


asm_submitter: Health Protection Agency


organism_name: Nitrosomonadaceae bacterium


organism_name: Lysobacterales bacterium


organism_name: Methanomassiliicoccales archaeon


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Nanobdellia archaeon


organism_name: Candidatus Omnitrophota bacterium


organism_name: Pseudomonadales bacterium


organism_name: Shigella sonnei


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Aquabacterium sp.


organism_name: Candidatus Bathyarchaeia archaeon


organism_name: Thermodesulfobacteriota bacterium


organism_name: Acinetobacter baumannii


organism_name: Victivallales bacterium


organism_name: Thermoplasmata archaeon


organism_name: Thermodesulfovibrionales bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Klebsiella pneumoniae


organism_name: Nitrosomonas sp.


organism_name: Thermoplasmatota archaeon


organism_name: Syntrophobacterales bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Lutimonas sp.


organism_name: Myxococcota bacterium


organism_name: Kofleriaceae bacterium


organism_name: Candidatus Moraniibacteriota bacterium


organism_name: Bacteroidota bacterium


asm_submitter: UFMG

infraspecific_name: strain=UFMG 008

organism_name: Bifidobacterium breve


organism_name: Pyrinomonadaceae bacterium


assembly_level: Scaffold

infraspecific_name: strain=UFMG 007

organism_name: Lactobacillus paragasseri


asm_submitter: African Genome Center

organism_name: Bacillus spizizenii


asm_submitter: Second Affiliated Hospital of Zhejiang University

organism_name: Morganella morganii


organism_name: Advenella kashmirensis


organism_name: Pseudomonas sp. AGC90


organism_name: Achromobacter semiaridum


organism_name: Serratia odorifera


organism_name: Stenotrophomonas sp. AGC87


organism_name: Achromobacter colocynthi


organism_name: Achromobacter maghribensis


organism_name: Bacillus cereus


organism_name: Pseudomonas shirazensis


organism_name: Pseudomonas sp. AGC75


organism_name: Pseudomonas qingdaonensis


organism_name: Bacillus subtilis


organism_name: Bacillus mobilis


organism_name: Desemzia sp. AGC72


organism_name: Brevibacterium sp. AGC70


refseq_category: reference genome

relation_to_type_material: assembly from type material


organism_name: Bacillus halotolerans


organism_name: Bacillus velezensis


organism_name: Brucella pituitosa


organism_name: Advenella kashmirensis


organism_name: Pseudomonas carnis


organism_name: Enterococcus entomosocium


organism_name: Pseudomonas proteolytica


organism_name: Serratia odorifera


organism_name: Achromobacter colocynthi


organism_name: Pseudomonas sp. AGC41


organism_name: Paenibacillus sp. AGC31


organism_name: Peribacillus frigoritolerans


organism_name: Achromobacter maghribensis


organism_name: Exiguobacterium acetylicum


organism_name: Alcaligenes nematophilus


organism_name: Achromobacter semiaridum


asm_submitter: Oswaldo Cruz Institute

organism_name: Pseudomonas aeruginosa


organism_name: Nitrosomonas sp.


organism_name: Limisphaerales bacterium


excluded_from_refseq: fragmented assembly


organism_name: Casimicrobiaceae bacterium


organism_name: Polyangiaceae bacterium


organism_name: Thermoplasmatota archaeon


excluded_from_refseq: derived from metagenome

organism_name: Nitrospira sp.


organism_name: Thermodesulfobacteriota bacterium


organism_name: Chromatiaceae bacterium


organism_name: Bacteroidota bacterium


organism_name: Thermodesulfovibrionales bacterium


organism_name: Syntrophobacterales bacterium


organism_name: Gemmatimonadales bacterium


organism_name: Burkholderiaceae bacterium


organism_name: Desulfobacterales bacterium


organism_name: Calditrichia bacterium


organism_name: Burkholderiales bacterium


organism_name: Thermoplasmata archaeon


organism_name: Candidatus Thorarchaeaceae archaeon


organism_name: Kofleriaceae bacterium


organism_name: Candidatus Omnitrophota bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Methylotenera sp.


organism_name: Nitrospirota bacterium


organism_name: Candidatus Bilamarchaeum sp.


organism_name: Candidatus Aquirickettsiella gammari


organism_name: Bacteroidales bacterium


organism_name: Rubrivivax sp.


organism_name: Saccharimonadales bacterium (SeqCode)


asm_submitter: Ningbo No.2 Hospital

organism_name: Staphylococcus epidermidis


organism_name: Candidatus Opimibacter sp.


organism_name: Nitrospira sp.


organism_name: Rhizobacter sp.


organism_name: Bdellovibrionota bacterium


organism_name: Saccharofermentanaceae bacterium


organism_name: Minisyncoccia bacterium


organism_name: Patescibacteria group bacterium


organism_name: Saccharofermentanales bacterium


organism_name: Lutibacter sp.


organism_name: Syntrophales bacterium


organism_name: Burkholderiaceae bacterium


organism_name: Candidatus Omnitrophota bacterium


organism_name: Candidatus Methanoperedens sp.


organism_name: Nitrospirota bacterium


organism_name: Desulfomonilia bacterium


organism_name: Dissulfuribacteraceae bacterium


organism_name: Thermoplasmatota archaeon


organism_name: Candidatus Aminicenantales bacterium


organism_name: Thermodesulfobacteriota bacterium


organism_name: Candidatus Deferrimicrobium sp.


organism_name: Acidiferrobacterales bacterium


organism_name: Phycisphaerales bacterium


organism_name: bacterium


organism_name: Thermoplasmata archaeon


organism_name: Planctomycetota bacterium


organism_name: Bacteroidota bacterium


organism_name: Candidatus Bathycorpusculum sp.


organism_name: Limisphaerales bacterium


organism_name: Chitinophagales bacterium


organism_name: Candidatus Omnitrophota bacterium


organism_name: Flavobacteriales bacterium


organism_name: Bacteroidia bacterium


organism_name: Dissulfurispiraceae bacterium


organism_name: Chitinophagaceae bacterium


organism_name: Thermoplasmatota archaeon


organism_name: Phnomibacter sp.


organism_name: Spirochaetota bacterium


organism_name: Thiobacillaceae bacterium


organism_name: Methanomassiliicoccales archaeon


organism_name: Desulfobacterales bacterium


organism_name: Steroidobacteraceae bacterium


organism_name: Thermoplasmata archaeon


organism_name: Acidiferrobacterales bacterium


organism_name: Bacteroidota bacterium


organism_name: Planctomycetota bacterium


organism_name: Syntrophorhabdus sp.


organism_name: Bacteroidales bacterium


organism_name: Desulfomonilia bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Candidatus Rariloculaceae bacterium


organism_name: Longimicrobiales bacterium


organism_name: Candidatus Limnocylindrales bacterium


organism_name: Burkholderiales bacterium


organism_name: Candidatus Nitrosomaritimum sp.


organism_name: Bacteroidia bacterium


organism_name: Candidatus Multivoradales bacterium


organism_name: Candidatus Nitrosopumilus sp.


organism_name: Thermodesulfobacteriota bacterium


organism_name: Gemmatimonadales bacterium


organism_name: Candidatus Krumholzibacteriia bacterium


organism_name: Aggregatilineales bacterium


organism_name: Kofleriaceae bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Micropepsaceae bacterium


organism_name: Myxococcota bacterium


organism_name: Planctomycetota bacterium


organism_name: Steroidobacteraceae bacterium


organism_name: Candidatus Rariloculaceae bacterium


organism_name: Dehalococcoidia bacterium


organism_name: Promineifilaceae bacterium (SeqCode)


organism_name: Nitrospira sp.


organism_name: Sneathiella sp.


organism_name: Acidimicrobiia bacterium


organism_name: Burkholderiales bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Phycisphaerae bacterium


organism_name: Longimicrobiales bacterium


organism_name: Kiloniellales bacterium


organism_name: Kofleriaceae bacterium


organism_name: Nitrospinales bacterium


organism_name: Porticoccaceae bacterium


organism_name: Candidatus Methylomirabilia bacterium


organism_name: Candidatus Azotimanducaceae bacterium


organism_name: Pelagibius sp.


organism_name: Candidatus Eutrophobiaceae bacterium


organism_name: Cyclobacteriaceae bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Aegicerativicinus sp.


organism_name: Planctomycetota bacterium


organism_name: Aggregatilineales bacterium


organism_name: Candidatus Defluviilinea sp.


organism_name: Candidatus Zhuqueibacter sp.


organism_name: Burkholderiaceae bacterium


organism_name: Calditrichales bacterium


organism_name: Longimicrobiales bacterium


organism_name: Kiloniellales bacterium


organism_name: Candidatus Rariloculaceae bacterium


organism_name: Vicinamibacteria bacterium


organism_name: Cellvibrionaceae bacterium


organism_name: Myxococcota bacterium


organism_name: Planctomycetaceae bacterium


organism_name: Polyangiales bacterium


organism_name: Thiohalomonadaceae bacterium


organism_name: Pirellulaceae bacterium


organism_name: Dehalococcoidia bacterium


organism_name: Candidatus Azotimanducaceae bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Candidatus Eiseniibacteriota bacterium


organism_name: Cyclobacteriaceae bacterium


organism_name: Terriglobia bacterium


organism_name: Anaerolineales bacterium


organism_name: Burkholderiales bacterium


organism_name: Haliangiales bacterium


organism_name: Rhodocyclaceae bacterium


organism_name: Candidatus Krumholzibacteriia bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Candidatus Rariloculaceae bacterium


organism_name: Planctomycetota bacterium


organism_name: Candidatus Eutrophobiaceae bacterium


organism_name: Candidatus Multivoradales bacterium


organism_name: Phototrophicaceae bacterium


organism_name: Nitrospira sp.


organism_name: Candidatus Defluviilinea sp.


organism_name: Methanocrinis sp.


organism_name: Temperatibacter sp.


organism_name: Sulfurimonadaceae bacterium


organism_name: bacterium


organism_name: Desulfuromonadales bacterium


organism_name: Anaerolineae bacterium


organism_name: Vicinamibacterales bacterium


organism_name: Candidatus Zixiibacteriota bacterium


organism_name: Thermodesulfovibrionales bacterium


organism_name: Yoonia sp.


organism_name: Alteromonadaceae bacterium


organism_name: Candidatus Azotimanducaceae bacterium


organism_name: Burkholderiaceae bacterium


organism_name: Sphingomonadales bacterium


organism_name: Thiohalomonadaceae bacterium


organism_name: Acidimicrobiia bacterium


organism_name: Candidatus Bathycorpusculaceae archaeon


organism_name: Thermoplasmatota archaeon


organism_name: Quisquiliibacterium sp.


organism_name: Sulfurimonadaceae bacterium


organism_name: Anaerobacaceae bacterium


organism_name: Robiginitalea sp.


organism_name: Gammaproteobacteria bacterium


organism_name: Candidatus Villigracilaceae bacterium


organism_name: Candidatus Aminicenantaceae bacterium


organism_name: Gemmatimonadales bacterium


organism_name: Cyclobacteriaceae bacterium


organism_name: Sulfurovum sp.


organism_name: Woeseiaceae bacterium


organism_name: Burkholderiales bacterium


organism_name: Deferrisomatales bacterium


organism_name: Porticoccaceae bacterium


organism_name: Syntrophales bacterium


organism_name: Candidatus Limnocylindrales bacterium


organism_name: Myxococcaceae bacterium


organism_name: Dehalococcoidia bacterium


organism_name: Candidatus Aminicenantia bacterium


organism_name: Kofleriaceae bacterium


organism_name: Anaerolineales bacterium


organism_name: Sulfurimonas sp.


organism_name: Nitrospirota bacterium


organism_name: Candidatus Nitrosomaritimum sp.


organism_name: Kiloniellales bacterium


organism_name: Candidatus Bathyarchaeia archaeon


organism_name: Steroidobacteraceae bacterium


organism_name: Candidatus Krumholzibacteriia bacterium


organism_name: Thiomicrorhabdus sp.


organism_name: Alcanivoracaceae bacterium


organism_name: Desulfobulbales bacterium


organism_name: Burkholderiales bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Sulfurimonadaceae bacterium


organism_name: Desulfobacterales bacterium


organism_name: Candidatus Palauibacterales bacterium


organism_name: Thiohalomonadaceae bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Magnetovibrionaceae bacterium


organism_name: Methanothrix sp.


organism_name: Bacteroidota bacterium


organism_name: Dehalococcoidia bacterium


organism_name: Gemmatimonadales bacterium


organism_name: Pseudodesulfovibrio sp.


organism_name: Labilibaculum sp.


organism_name: Pelagibius sp.


organism_name: Anaerolineales bacterium


organism_name: Candidatus Multivoradales bacterium


organism_name: Spirochaetota bacterium


organism_name: Thermodesulfobacteriota bacterium


organism_name: Anaeromyxobacteraceae bacterium


organism_name: Roseovarius sp.


organism_name: Kiloniellales bacterium


organism_name: Burkholderiales bacterium


organism_name: Oceanipulchritudinaceae bacterium


organism_name: Candidatus Nitrosomaritimum sp.


organism_name: Thiohalomonadaceae bacterium


organism_name: Steroidobacteraceae bacterium


organism_name: Syntrophotaleaceae bacterium


organism_name: Candidatus Eutrophobiaceae bacterium


organism_name: Candidatus Limnocylindria bacterium


organism_name: Aggregatilineales bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Sulfurovum sp.


organism_name: Gemmatimonadales bacterium


organism_name: Tenderiaceae bacterium (SeqCode)


organism_name: Sulfurimonas sp.


organism_name: Sulfurimonadaceae bacterium


organism_name: Thermodesulfovibrionia bacterium


organism_name: Hyphococcus sp.


organism_name: Burkholderiales bacterium


organism_name: bacterium


organism_name: Desulforhopalus sp.


organism_name: Gammaproteobacteria bacterium


organism_name: Candidatus Limnocylindrales bacterium


organism_name: Candidatus Villigracilaceae bacterium


organism_name: Candidatus Multivoradales bacterium


organism_name: Lutibacter sp.


organism_name: Candidatus Zixiibacteriota bacterium


organism_name: Desulfosarcinaceae bacterium


organism_name: Binatia bacterium (SeqCode)


organism_name: Alphaproteobacteria bacterium


organism_name: Thiohalomonadaceae bacterium


organism_name: Desulfobulbaceae bacterium


organism_name: Candidatus Methanocomedenaceae archaeon


organism_name: Nitrospiria bacterium


organism_name: Zhongshania aliphaticivorans


organism_name: Kiloniellales bacterium


organism_name: Candidatus Electrothrix sp.


organism_name: Cyclobacteriaceae bacterium


organism_name: Pseudolabrys sp.


organism_name: Alteromonadaceae bacterium


organism_name: Luteolibacter sp.


organism_name: Anaerobacaceae bacterium


organism_name: Anaerolineales bacterium


asm_submitter: National Center for Biotechnology Information

organism_name: Staphylococcus aureus


organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


organism_name: Proteus mirabilis


excluded_from_refseq: contaminated; from large multi-isolate project


organism_name: Klebsiella oxytoca


organism_name: Klebsiella ornithinolytica


organism_name: Enterobacter hormaechei


organism_name: Klebsiella planticola


organism_name: Klebsiella aerogenes


organism_name: Klebsiella variicola


organism_name: Klebsiella michiganensis


asm_submitter: CDC


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Shigella flexneri


organism_name: Shigella sonnei


organism_name: Yersinia enterocolitica


organism_name: Acinetobacter baumannii


asm_submitter: Huazhong Agricultural University

organism_name: Candidatus Saccharimonadota bacterium


organism_name: Methylophilus sp.


asm_submitter: University of Texas at San Antonio

isolate: CLE-Opv

organism_name: Coxiella endosymbiont of Ornithodoros peruvianus


organism_name: Paludisphaera sp.


organism_name: Agriterribacter sp.


organism_name: Chitinophagaceae bacterium


organism_name: Fluviicola sp.


organism_name: Flammeovirgaceae bacterium


organism_name: Planctomycetaceae bacterium


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Klebsiella pneumoniae


organism_name: Pedobacter sp.


organism_name: Escherichia coli


organism_name: Ginsengibacter sp.


organism_name: Daejeonella sp.


organism_name: Pseudolysinimonas sp.


organism_name: Pseudolabrys sp.


organism_name: Verrucomicrobiota bacterium


organism_name: Pirellulaceae bacterium


organism_name: Pseudohongiellaceae bacterium


organism_name: Croceibacterium sp.


organism_name: bacterium


organism_name: Sphingopyxis sp.


organism_name: Sphingobium sp.


organism_name: Chryseotalea sp.


organism_name: Adhaeribacter sp.


organism_name: Kofleriaceae bacterium


organism_name: Allostella sp.


organism_name: Chitinophaga sp.


organism_name: Escherichia coli


organism_name: Planctomycetaceae bacterium


organism_name: Sediminibacterium sp.


organism_name: Gammaproteobacteria bacterium


organism_name: Arenimonas sp.


organism_name: Achromobacter spanius


organism_name: Nocardioides sp.


organism_name: Flavobacterium anhuiense


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Croceibacterium sp.


organism_name: bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Candidatus Saccharimonadota bacterium


organism_name: Daejeonella sp.


organism_name: Trinickia sp.


organism_name: Flammeovirgaceae bacterium


organism_name: Limnobacter sp.


organism_name: Methylophilaceae bacterium


organism_name: Escherichia coli


organism_name: Planctomycetaceae bacterium


organism_name: Dyella jiangningensis


organism_name: Methylotenera sp.


organism_name: Algoriphagus sp.


organism_name: Mucilaginibacter sp.


organism_name: Dyadobacter sp.


organism_name: Solimonas sp.


organism_name: Burkholderiaceae bacterium


organism_name: Parafilimonas sp.


organism_name: Sphingomonas sp.


organism_name: Flavobacterium sp.


organism_name: Alicyclobacillaceae bacterium


organism_name: Candidatus Saccharimonadota bacterium


organism_name: Cytophagaceae bacterium


organism_name: Flavipsychrobacter sp.


organism_name: Pelobium sp.


organism_name: Escherichia coli


organism_name: Stenotrophobium sp.


organism_name: Methylophilus sp.


organism_name: Alteraurantiacibacter sp.


organism_name: Azospirillum oryzae


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Pseudomonas sichuanensis


organism_name: Pseudobdellovibrionaceae bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Dyadobacter sp.


organism_name: Chitinophaga sp.


organism_name: Comamonas thiooxydans


organism_name: Actinomycetota bacterium


organism_name: Luteolibacter sp.


organism_name: Parapedobacter indicus


organism_name: Rufibacter sp.


organism_name: Achromobacter mucicolens


organism_name: Opitutaceae bacterium


organism_name: Ferruginibacter sp.


organism_name: Escherichia coli


organism_name: Verrucomicrobiota bacterium


organism_name: Micromonospora sp.


organism_name: Planctomyces sp.


organism_name: Gemmatimonas sp.


organism_name: Gammaproteobacteria bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Mucilaginibacter sp.


organism_name: Terrimicrobiaceae bacterium


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Allobosea sp.


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Opitutus sp.


organism_name: Sphingobacteriaceae bacterium


organism_name: Listeria monocytogenes


organism_name: Oxalicibacterium sp.


organism_name: Flavobacterium sp.


organism_name: Arsenicitalea sp.


organism_name: Pseudomonadota bacterium


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


organism_name: Phenylobacterium sp.


organism_name: Verticiella sp.


organism_name: Gemmatirosa sp.


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Ignavibacteriota bacterium


organism_name: Hylemonella sp.


organism_name: Escherichia coli


organism_name: Sphingomonas sp.


organism_name: Methylophilus sp.


organism_name: Steroidobacter sp.


organism_name: Asticcacaulis sp.


organism_name: Dyadobacter sp.


organism_name: Rhodospirillaceae bacterium


organism_name: Acidobacteriota bacterium


organism_name: Bacteroidota bacterium


organism_name: Gammaproteobacteria bacterium


organism_name: Flavobacterium sp.


organism_name: Noviherbaspirillum sp.


organism_name: Mucilaginibacter sp.


organism_name: Delftia acidovorans


organism_name: Ramlibacter sp.


organism_name: Pedobacter suwonensis


organism_name: Sphingobacteriaceae bacterium


organism_name: Escherichia coli


organism_name: Sphingobium phenoxybenzoativorans


organism_name: Mesobacillus sp.


organism_name: Hylemonella sp.


organism_name: Longimicrobiaceae bacterium


organism_name: Candidatus Saccharimonadota bacterium


organism_name: Flavisolibacter sp.


organism_name: Sphingomonas sp.


organism_name: Pirellulaceae bacterium


organism_name: Microbacterium sp.


organism_name: Stenotrophomonas sp.


organism_name: Gemmatimonadaceae bacterium


organism_name: Mucilaginibacter sp.


organism_name: Frateuria sp.


organism_name: Trinickia sp.


organism_name: bacterium


organism_name: Acidobacteriota bacterium


organism_name: Escherichia coli


organism_name: Planctomycetaceae bacterium


organism_name: Longimicrobium sp.


organism_name: Ginsengibacter sp.


organism_name: Devosia sp.


asm_submitter: USDA FSIS

organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


organism_name: Nocardioides sp.


organism_name: Xanthobacteraceae bacterium


organism_name: Edaphobacter sp.


asm_submitter: Centers for Disease Control and Prevention


organism_name: Microbacterium sp.


organism_name: Arenimonas sp.


organism_name: Chitinophagaceae bacterium


organism_name: Pseudomonas sichuanensis


organism_name: Alphaproteobacteria bacterium


organism_name: Mucilaginibacter sp.


organism_name: Leifsonia sp.


organism_name: Sphingobacteriaceae bacterium


organism_name: Escherichia coli


organism_name: Rhizomicrobium sp.


organism_name: Micrococcales bacterium


organism_name: Candidatus Berkiella sp.


organism_name: Sphingomicrobium sp.


organism_name: Pirellulaceae bacterium


organism_name: Cellvibrio sp.


organism_name: Candidatus Laterigemmans sp.


organism_name: Aureliella sp.


organism_name: Prosthecobacter sp.


organism_name: Fluviicola sp.


organism_name: Ralstonia sp.


organism_name: Chthoniobacteraceae bacterium


organism_name: Devosia sp.


organism_name: Brevundimonas sp.


organism_name: Trinickia sp.


organism_name: Stenotrophobium sp.


organism_name: Escherichia coli


organism_name: Haloferula sp.


organism_name: Daejeonella sp.


organism_name: Reyranella sp.


organism_name: Candidatus Saccharimonadota bacterium


organism_name: Planctomycetaceae bacterium


organism_name: Pseudomonadota bacterium


excluded_from_refseq: contaminated; derived from metagenome


organism_name: Rheinheimera sp.


organism_name: Flavobacterium zhairuonense


organism_name: Larkinella sp.


organism_name: Burkholderiaceae bacterium


organism_name: Dyadobacter sp.


organism_name: Sphingobacterium mizutaii


organism_name: Flavisolibacter sp.


organism_name: bacterium


organism_name: Caulobacter sp.


organism_name: Flavihumibacter sp.


organism_name: Escherichia coli


organism_name: Methyloversatilis discipulorum


organism_name: Campylobacter coli


organism_name: Longimicrobium sp.


organism_name: Pseudoxanthomonas sp.


organism_name: Flavobacterium sp.


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Campylobacter jejuni


organism_name: Rhizomicrobium sp.


organism_name: Croceibacterium sp.


organism_name: Anatilimnocola sp.


organism_name: Acinetobacter baumannii


organism_name: Pirellulaceae bacterium


organism_name: Sphingobacteriaceae bacterium


organism_name: Luteimonas sp.


organism_name: Chlamydiota bacterium


organism_name: Candidatus Saccharimonadota bacterium


organism_name: Sphingomonas sp.


organism_name: Escherichia coli


organism_name: Chthoniobacteraceae bacterium


organism_name: Luteibacter sp.


organism_name: Chitinophagaceae bacterium


organism_name: Planctomycetota bacterium


organism_name: Bacteroidota bacterium


organism_name: bacterium


organism_name: Devosia sp.


organism_name: Pseudorhodoferax sp.


organism_name: Croceibacterium sp.


organism_name: Rhodoglobus sp.


organism_name: Cyclobacteriaceae bacterium


organism_name: Phenylobacterium sp.


organism_name: Sphingopyxis sp.


organism_name: Betaproteobacteria bacterium


organism_name: Adhaeribacter sp.


organism_name: Methylotenera sp.


organism_name: Luteimonas sp.


organism_name: Escherichia coli


organism_name: Dyadobacter bucti


organism_name: Candidatus Saccharimonadota bacterium


asm_submitter: University of Pretoria

excluded_from_refseq: RefSeq annotation failed

organism_name: Salmonella enterica subsp. enterica serovar Cologne


asm_submitter: Universidade do Algarve

organism_name: Komagataeibacter ossonobensis


asm_submitter: Medical University of Innsbruck

organism_name: Achromobacter sp. MUI-25009338


organism_name: Achromobacter sp. MUI-25019435-2


organism_name: Achromobacter sp. MUI-25019435-1T


asm_submitter: Bose Institute

organism_name: Aquificia bacterium


organism_name: Thermosynechococcus sp.


organism_name: Thermoflexaceae bacterium


organism_name: Thermoprotei archaeon


organism_name: bacterium


organism_name: Halomonadaceae bacterium


organism_name: Thermoproteota archaeon


organism_name: Thermoproteales archaeon


organism_name: Tepidimonas ignava


organism_name: Escherichia coli


organism_name: Armatimonadota bacterium


organism_name: Vibrio metschnikovii


organism_name: Thermoflexus sp.


organism_name: Acinetobacter indicus


organism_name: Thermaceae bacterium


organism_name: Burkholderiales bacterium


organism_name: Trinickia sp.


organism_name: Myxococcales bacterium


organism_name: Pseudolabrys sp.


organism_name: Candidatus Sumerlaeota bacterium


organism_name: Gallionella sp.


organism_name: Solimicrobium sp.


organism_name: Candidatus Saccharimonadota bacterium


organism_name: Flavisolibacter sp.


organism_name: Ginsengibacter sp.


organism_name: Holophagaceae bacterium


organism_name: Frateuria sp.


organism_name: Verrucomicrobiota bacterium


organism_name: Saccharimonas sp. (SeqCode)


organism_name: Patescibacteria group bacterium


organism_name: Trinickia soli


organism_name: Mucilaginibacter rubeus


organism_name: Devosia sp.


organism_name: Rhizomicrobium sp.


organism_name: Flavisolibacter ginsengisoli


organism_name: Flavipsychrobacter sp.


organism_name: Asticcacaulis sp.


organism_name: Roseateles sp.


organism_name: Chitinophagaceae bacterium


organism_name: Aureliella sp.


organism_name: Gemmatimonadaceae bacterium


organism_name: Longimicrobiaceae bacterium


organism_name: Sphingobacteriaceae bacterium


organism_name: Ginsengibacter sp.


organism_name: Luteimonas sp.


organism_name: Candidatus Saccharimonadota bacterium


organism_name: Lacibacter sp.


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Planctomyces sp.


organism_name: bacterium


organism_name: Ohtaekwangia sp.


organism_name: Cellvibrio sp.


organism_name: Rhodospirillaceae bacterium


organism_name: Devosia sp.


organism_name: Pseudomonadota bacterium


organism_name: Sphingomonas sp.


organism_name: Steroidobacter sp.


organism_name: Sphingomicrobium sp.


organism_name: Pelagerythrobacter sp.


organism_name: Opitutaceae bacterium


organism_name: Patescibacteria group bacterium


organism_name: Candidatus Kaiserbacteria bacterium


organism_name: Caulobacter sp.


organism_name: Verrucomicrobiales bacterium


organism_name: Actinomycetota bacterium


organism_name: Bryobacteraceae bacterium


organism_name: Caenibius sp.


organism_name: Anatilimnocola sp.


organism_name: Edaphocola flava


organism_name: Limnobacter sp.


organism_name: Chitinophagaceae bacterium


organism_name: Parageobacillus caldoxylosilyticus


organism_name: Brevundimonas sp.


organism_name: Bordetella sp.


organism_name: Sphingobacteriaceae bacterium


organism_name: Ralstonia holmesii


organism_name: Ohtaekwangia sp.


organism_name: Ginsengibacter sp.


organism_name: Planctomycetaceae bacterium


organism_name: Sphingopyxis sp.


organism_name: Pantoea sp.


organism_name: Edaphobacter sp.


organism_name: Leifsonia sp.


organism_name: Dyella sp.


organism_name: Homoserinibacter sp.


organism_name: Pseudomonadota bacterium


organism_name: Limisphaerales bacterium


organism_name: Cytophagaceae bacterium


organism_name: Burkholderiaceae bacterium


organism_name: Gemmatimonadota bacterium


organism_name: Acidobacteriota bacterium


organism_name: Qipengyuania sp.


organism_name: Arenimonas sp.


organism_name: Actinomycetota bacterium


organism_name: Croceibacterium sp.


organism_name: Sphingomicrobium sp.


organism_name: Ginsengibacter sp.


organism_name: Candidatus Levyibacteriota bacterium


asm_submitter: SIKKIM UNIVERSITY

excluded_from_refseq: annotation fails completeness check

organism_name: Lactiplantibacillus plantarum


organism_name: Burkholderiales bacterium


organism_name: Pyrobaculum aerophilum


organism_name: Aquificia bacterium


organism_name: Thermoproteota archaeon


organism_name: Thermoprotei archaeon


organism_name: Armatimonadota bacterium


organism_name: bacterium


organism_name: Thermoflexus sp.


organism_name: Microbacterium sp.


organism_name: Moraxellaceae bacterium


organism_name: Thermoflexaceae bacterium


organism_name: Psychrobacter sp.


organism_name: Thermaceae bacterium


organism_name: Thermoproteales archaeon


organism_name: Thermosynechococcus sp.


organism_name: Vibrionaceae bacterium


organism_name: Halomonadaceae bacterium


organism_name: Georgenia sp.


organism_name: Brevundimonas sp.


organism_name: Aquificia bacterium


organism_name: Sphingomonas sp.


organism_name: Sphingomonadales bacterium


organism_name: Armatimonadota bacterium


organism_name: Thermoproteota archaeon


organism_name: Cyanobacteriota bacterium


organism_name: Thermoprotei archaeon


organism_name: Pyrobaculum aerophilum


organism_name: Agrobacterium pusense


organism_name: Gammaproteobacteria bacterium


organism_name: bacterium


organism_name: Thermoflexus sp.


organism_name: Thermaceae bacterium


organism_name: Thermosynechococcus sp.


organism_name: Vibrio metschnikovii


organism_name: Halomonadaceae bacterium


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Stutzerimonas stutzeri


organism_name: Xanthobacter sp. BG11Y11_SDJG


excluded_from_refseq: many frameshifted proteins

organism_name: Sphingopyxis terrae subsp. ummariensis


organism_name: Sphingomonas koreensis


excluded_from_refseq: genus undefined


organism_name: Aeromicrobium sp. PFPM2_SD2


organism_name: Mycolicibacterium iranicum


organism_name: Micrococcus sp. LASM2_SD2


organism_name: Microbacterium sp. CFSPD4_SD4


organism_name: Methylorubrum sp. BG1123_SDJG


organism_name: Kytococcus sedentarius


organism_name: Janibacter sp. CFPM2_SD2


organism_name: Corynebacterium kalidii


organism_name: Brucellaceae sp. CFSPD4_SD2


organism_name: Brevundimonas sp. CURTG3B2_SDJG


organism_name: Brevundimonas sp. ENURT2_SDJG


organism_name: Brevundimonas aurantiaca


organism_name: Brevibacterium sp. LAARM3_SD1


organism_name: Brevibacterium sp. LAARM2_SD2


organism_name: Brevibacterium casei


organism_name: Brachybacterium sp. LAMA1_SD2Y


organism_name: Agrobacterium pusense


asm_submitter: KU - University of Copenhagen

organism_name: Pseudolactococcus laudensis


asm_submitter: Wroclaw University of Environmental and Life Sciences

assembly_level: Chromosome

organism_name: Capnocytophaga stomatis


asm_submitter: Hubei  University of Chinese Medicine

organism_name: Paenibacillus sp. XP01


asm_submitter: ICAR-Central Institute of Coldwater Fisheries Research

infraspecific_name: strain=FCH

organism_name: Flavobacterium covae


infraspecific_name: strain=FCBC


asm_submitter: Chung-Ang university

organism_name: Erythrobacter sp. S158


organism_name: Erythrobacter sp. S227


organism_name: Erythrobacter sp. W36


organism_name: Erythrobacter sp. SN6-5


organism_name: Erythrobacter sp. S43


organism_name: Erythrobacter sp. S259


organism_name: Erythrobacter sp. S249


organism_name: Erythrobacter sp. S243


organism_name: Erythrobacter sp. JB3-1


organism_name: Erythrobacter sp. JB2-19


organism_name: Erythrobacter sp. JB1-7


organism_name: Erythrobacter sp. JB1-4


organism_name: Erythrobacter sp. JB1-15


organism_name: Erythrobacter sp. S267


organism_name: Erythrobacter sp. S57(2025)


organism_name: Salinibacterium sp. 10G20-15


organism_name: Sphingopyxis sp. 10G20-10


organism_name: Herbiconiux sp. J20-20


organism_name: Rhodopirellula sp. J20-39


asm_submitter: Shanghai Jiao Tong University

organism_name: Bacillus amyloliquefaciens


organism_name: Bacillus velezensis


asm_submitter: Qinghai university

organism_name: Lactiplantibacillus plantarum


asm_submitter: Regional Public Health Laboratory, Crete

excluded_from_refseq: from large multi-isolate project

organism_name: Pseudomonas aeruginosa


isolate: Pae 14


isolate: Pae 15


isolate: 76799 apoikies


excluded_from_refseq: annotation fails completeness check; from large multi-isolate project


asm_submitter: University of Bath

organism_name: Enterococcus faecium


asm_submitter: SRCAMB

infraspecific_name: strain=SCPM-O-B-9201 (21)

organism_name: Klebsiella quasipneumoniae


infraspecific_name: strain=SCPM-O-B-9200 (12)


infraspecific_name: strain=SCPM-O-B-9171 (68)

organism_name: Klebsiella variicola


infraspecific_name: strain=SCPM-O-B-9166 (54)


infraspecific_name: strain=SCPM-O-B-9164 (53)


infraspecific_name: strain=SCPM-O-B-9178 (96)

organism_name: Klebsiella pneumoniae


infraspecific_name: strain=SCPM-O-B-9185 (66)


asm_submitter: Northwest A&F University

excluded_from_refseq: unverified source organism

organism_name: Acinetobacter indicus


asm_submitter: Universiti Sains Malaysia and Yokohama City University

organism_name: Hahella sp. NS-SX17


asm_submitter: Shanghai Jiao tong university, China

organism_name: Emcibacteraceae bacterium ICDLI1TA213


asm_submitter: SKUAST-Kashmir

isolate: sheep

organism_name: Fusobacterium sp. JKSFn-26


organism_name: Rhodococcus sp. NS-SX18


organism_name: Pseudoalteromonas sp. NS-SX12


asm_submitter: Los Angeles County Public Health Lab microbial pathogen submission group

organism_name: Acinetobacter baumannii


asm_submitter: Abilene Christian University

infraspecific_name: strain=SC 1154

organism_name: Pseudomonas donghuensis


asm_submitter: Mohanlal Sukhadia University

infraspecific_name: strain=LB 18

organism_name: Cytobacillus pseudoceanisediminis


asm_submitter: Al-Karkh University of Science

isolate: dental bacteria

organism_name: Streptococcus mutans


asm_submitter: SRM INSTITUTE OF SCIENCE AND TECHNOLOGY

excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Tissierellales bacterium


asm_submitter: SinaClon Pharmed


asm_submitter: Institute of Experimental Medicine

organism_name: Staphylococcus hominis


asm_submitter: University of Tyumen

organism_name: Priestia megaterium


asm_submitter: Sichuan Agricultural University

infraspecific_name: strain=DSM 14838

organism_name: Bacteroides cellulosilyticus DSM 14838


organism_name: Lysinibacillus fusiformis


asm_submitter: University of Wisconsin-Madison

infraspecific_name: strain=ATCC 15382

organism_name: Aliivibrio friggae


organism_name: Aliivibrio thorii


infraspecific_name: strain=ATCC 35077

organism_name: Aliivibrio logei


infraspecific_name: strain=ATCC 29985


asm_submitter: Kazan National Research Technological University

organism_name: Limosilactobacillus fermentum


asm_submitter: Karadeniz Technical University

organism_name: Bacillus licheniformis


asm_submitter: Ho Chi Minh City University of Technology

organism_name: Edwardsiella tarda


asm_submitter: Centers for Disease Control and Prevention

organism_name: Streptococcus pneumoniae


organism_name: Streptococcus pyogenes


organism_name: Staphylococcus aureus


organism_name: Neisseria meningitidis


organism_name: Neisseria gonorrhoeae


asm_submitter: First Affiliated Hospital of Medicine School, Zhejiang University

organism_name: Klebsiella quasipneumoniae


asm_submitter: University of Glasgow

organism_name: Marinobacter nauticus


asm_submitter: The Independent Schools Foundation Academy

organism_name: Acinetobacter gyllenbergii


organism_name: Acinetobacter johnsonii


organism_name: Acinetobacter lwoffii


organism_name: Acinetobacter pseudolwoffii


organism_name: Empedobacter sp. EJD.6dd


organism_name: Lysinibacillus fusiformis


asm_submitter: China CDC

organism_name: Morganella morganii


organism_name: Tsukamurella pulmonis


organism_name: Elizabethkingia anophelis


organism_name: Planococcus sp. RAB007_Raresut


asm_submitter: khalifa university

organism_name: Comamonas sp. FUJ_7


organism_name: Virgibacillus halodenitrificans


asm_submitter: Toho University

organism_name: Burkholderia cepacia complex sp. TUM26381


asm_submitter: United Arab Emirates University

organism_name: Bacillus paralicheniformis


organism_name: Bacillus inaquosorum


organism_name: Exiguobacterium profundum


asm_submitter: Universiti Malaya

organism_name: Escherichia coli


organism_name: Pseudomonas aeruginosa


asm_submitter: South China Agricultural University

organism_name: Klebsiella pneumoniae


asm_submitter: Chung-Ang university

organism_name: Arthrobacter sp. MOO21


asm_submitter: National Taiwan University

organism_name: Spongiibacter sp. C9W


asm_submitter: Joint Vietnam-Russia Tropical Science and Technology Research Center

organism_name: Bacillus cereus


asm_submitter: Maternal and Child Health Hospital of Guangxi Zhuang Autonomous Region, Nanning, China.

organism_name: Acinetobacter baumannii


organism_name: Streptococcus pneumoniae


asm_submitter: Lebanese American University

organism_name: Salmonella enterica subsp. enterica serovar Senftenberg


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Pseudomonas machongensis


asm_submitter: The University of Burdwan

infraspecific_name: strain=SD


asm_submitter: University of Tehran

organism_name: Pseudomonas sp. FA117


organism_name: Salmonella enterica subsp. enterica serovar Haifa


organism_name: Salmonella enterica subsp. enterica serovar Falkensee


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Staphylococcus warneri


asm_submitter: McMaster University

organism_name: Streptomyces sp. WAC07019


organism_name: Streptomyces sp. WAC06136


organism_name: Streptomyces sp. WAC05909


organism_name: Streptomyces sp. WAC04761


organism_name: Streptomyces sp. WAC04670


organism_name: Streptomyces sp. WAC03905


asm_submitter: The University of Tulsa

organism_name: Nocardiopsis dassonvillei


asm_submitter: Sungen Bioscience Co.,Ltd.

organism_name: Bacillus subtilis


asm_submitter: Public Health England

organism_name: Yersinia enterocolitica


organism_name: Campylobacter jejuni


asm_submitter: Health Protection Agency

organism_name: Escherichia coli


asm_submitter: FDA Center for Food Safety and Applied Nutrition

organism_name: Listeria monocytogenes


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Shigella flexneri


organism_name: Shigella sonnei


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Pseudomonas aeruginosa


organism_name: Vibrio parahaemolyticus


organism_name: Vibrio cholerae


organism_name: Salmonella enterica subsp. enterica serovar Brandenburg


organism_name: Salmonella enterica subsp. enterica


organism_name: Salmonella enterica subsp. enterica serovar Chester


asm_submitter: khalifa university

organism_name: Sporosarcina sp. AD_1


organism_name: Shigella dysenteriae


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Hadar


organism_name: Acinetobacter baumannii


organism_name: Klebsiella pneumoniae


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: USDA FSIS

organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


asm_submitter: FDA/CFSAN

organism_name: Listeria monocytogenes


organism_name: Pseudomonas aeruginosa


organism_name: Enterobacter hormaechei


asm_submitter: Uppsala University


asm_submitter: ICAR-National Institute of Veterinary Epidemiology and disease informatics

organism_name: Mammaliicoccus sciuri


organism_name: Klebsiella oxytoca


asm_submitter: Centers for Disease Control and Prevention


asm_submitter: CDC


organism_name: Salmonella enterica subsp. enterica serovar Bovismorbificans


organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


asm_submitter: National Center for Biotechnology Information


asm_submitter: Huazhong Agricultural University

organism_name: Ligilactobacillus salivarius


asm_submitter: iBET

organism_name: Novosphingobium sp. NFX11


asm_submitter: Universidad Nacional del Centro del Peru

organism_name: Levilactobacillus brevis


organism_name: Latilactobacillus curvatus


organism_name: Lactiplantibacillus plantarum


organism_name: Latilactobacillus sakei


organism_name: Lentilactobacillus buchneri


organism_name: Lacticaseibacillus paracasei


organism_name: Escherichia coli


asm_submitter: University of Bern

isolate: Skin

organism_name: Staphylococcus saprophyticus


asm_submitter: Universiti Sains Malaysia and Yokohama City University

organism_name: Thioclava sp. NS-SX20


organism_name: Pseudooceanicola sp. NS-SX9


organism_name: Deinococcus sp. NS-SX14


organism_name: Pseudooceanicola sp. NS-SX8


asm_submitter: Northwest A&F University

organism_name: Acinetobacter indicus


asm_submitter: Zhejiang University

organism_name: Terriglobales bacterium


asm_submitter: The University of Hong Kong

organism_name: Aristaeellaceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Faecousia sp.


organism_name: Haemophilus influenzae


asm_submitter: Indiana Department of Health


organism_name: Ruminococcus intestinalis


organism_name: Oscillospiraceae bacterium


organism_name: Shigella flexneri


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Bacteroides uniformis


asm_submitter: Federal Insitute for Risk Assessment

organism_name: Yersinia pseudotuberculosis


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Give


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Brucella suis


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Staphylococcus aureus


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Acinetobacter baumannii


organism_name: Barnesiella intestinihominis


organism_name: Desulfovibrio fairfieldensis


organism_name: Parabacteroides distasonis


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Alistipes ihumii


excluded_from_refseq: derived from metagenome

organism_name: Candidatus Fimenecus sp.


organism_name: Megasphaera elsdenii


organism_name: Oscillospiraceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Mediterraneibacter torques


organism_name: Roseburia faecis


organism_name: Bifidobacterium adolescentis


organism_name: Cloacibacillus porcorum


organism_name: Angelakisella sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Methanobrevibacter smithii


organism_name: Alistipes onderdonkii


organism_name: Staphylococcus aureus


organism_name: Coprococcus sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small; genus undefined

organism_name: [Eubacterium] siraeum


organism_name: Alistipes hominis


organism_name: Oscillibacter sp.


organism_name: Bilophila wadsworthia


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Apopatocola sp.


organism_name: Alistipes sp.


organism_name: Vescimonas sp.


organism_name: Escherichia coli


organism_name: Acutalibacteraceae bacterium


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Faecalibacterium duncaniae


organism_name: Vibrio parahaemolyticus


organism_name: Gemmiger qucibialis


organism_name: Gemmiger formicilis


organism_name: Mediterraneibacter faecis


organism_name: Collinsella sp.


organism_name: Staphylococcus aureus


organism_name: Bacteroides ndongoniae


organism_name: Phascolarctobacterium faecium


organism_name: Agathobacter rectalis


organism_name: Roseburia inulinivorans


organism_name: Alistipes putredinis


organism_name: Parabacteroides merdae


organism_name: Butyricimonas sp.


organism_name: Phocaeicola vulgatus


organism_name: Candidatus Aphodousia faecavium


organism_name: Ruminococcoides intestinale


organism_name: Mediterraneibacter torques


organism_name: Barnesiella intestinihominis


organism_name: Roseburia intestinalis


organism_name: Alistipes onderdonkii


organism_name: Alistipes shahii


organism_name: Bacteroides caccae


organism_name: Bifidobacterium longum


organism_name: Staphylococcus aureus


organism_name: Collinsella sp.


organism_name: Blautia faecis


organism_name: Sutterella wadsworthensis


organism_name: Veillonellaceae bacterium


organism_name: Faecalibacterium butyricigenerans


organism_name: Brachyspira aalborgi


organism_name: Blautia wexlerae


organism_name: Faecalibacterium duncaniae


organism_name: Prevotella sp.


organism_name: Roseburia inulinivorans


organism_name: Segatella copri


organism_name: Phocaeicola faecicola


organism_name: Eubacteriales bacterium


organism_name: Gemmiger formicilis


organism_name: Roseburia faecis


organism_name: Acutalibacteraceae bacterium


organism_name: Agathobacter rectalis


organism_name: Staphylococcus aureus


organism_name: Paraprevotella clara


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Porcipelethomonas sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Coprococcus sp.


organism_name: Parabacteroides merdae


organism_name: Gemmiger qucibialis


organism_name: Lactiplantibacillus plantarum


organism_name: Gemmatimonadales bacterium


asm_submitter: Bose Institute

organism_name: Alloboseaceae bacterium


organism_name: Alloboseaceae bacterium BG11AB_SDJG11


organism_name: Brucella suis


organism_name: Yersinia pseudotuberculosis


organism_name: Campylobacter lari


organism_name: Campylobacter coli


organism_name: Streptococcus pyogenes


organism_name: Campylobacter jejuni


organism_name: Acinetobacter baumannii


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


organism_name: Enterobacter hormaechei


organism_name: Klebsiella michiganensis


organism_name: Shigella flexneri


organism_name: Pseudomonas aeruginosa


organism_name: Shigella sonnei


organism_name: Staphylococcus aureus


asm_submitter: FDA Center for Food Safety and Applied Nutrition


asm_submitter: FDA/CFSAN

organism_name: Salmonella enterica


asm_submitter: CDC

organism_name: Vibrio cholerae


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Salmonella enterica subsp. enterica serovar Give


asm_submitter: USDA FSIS


organism_name: Campylobacter coli


asm_submitter: FDA-CVM

organism_name: Vibrio parahaemolyticus


organism_name: Salmonella enterica subsp. enterica serovar Senftenberg


organism_name: Salmonella enterica subsp. enterica serovar Alachua


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Uganda


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Salmonella enterica subsp. enterica serovar Liverpool


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


organism_name: Campylobacter upsaliensis


excluded_from_refseq: unverified source organism; from large multi-isolate project


organism_name: Listeria monocytogenes


organism_name: Escherichia coli


organism_name: Shigella flexneri


organism_name: Pseudomonas aeruginosa


organism_name: Salmonella enterica


asm_submitter: National Center for Biotechnology Information

organism_name: Neisseria meningitidis


organism_name: Shigella sonnei


organism_name: Legionella pneumophila


organism_name: Vibrio vulnificus


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Acinetobacter baumannii


organism_name: Klebsiella oxytoca


organism_name: Salmonella enterica subsp. enterica serovar Kiambu


organism_name: Enterobacter hormaechei


organism_name: Yersinia enterocolitica


organism_name: Serratia marcescens


asm_submitter: Rhode Island State Health Laboratory


organism_name: Campylobacter jejuni


organism_name: Escherichia coli


organism_name: Campylobacter coli


organism_name: Klebsiella pneumoniae


organism_name: Shigella flexneri


organism_name: Proteus mirabilis


organism_name: Listeria innocua


isolate: ESKAPEE pathogen


organism_name: Citrobacter freundii


organism_name: Shigella sonnei


infraspecific_name: strain=SaSh 2_Baghdad


asm_submitter: KAUST

organism_name: Candidatus Neomicrothrix parvicella


organism_name: Candidatus Phosphoribacter hodrii


organism_name: Candidatus Phosphoribacter baldrii


organism_name: Candidatus Nanopelagicales bacterium


organism_name: Propionibacteriaceae bacterium


organism_name: Microthrixaceae bacterium


organism_name: Candidatus Lutibacillus sp.


organism_name: Propionicimonas sp.


organism_name: Phycicoccus sp.


organism_name: Actinomycetales bacterium


organism_name: Candidatus Phosphoribacter sp.


organism_name: Nostocoides sp.


organism_name: Hyphomicrobium sp.


organism_name: Mycobacterium sp.


organism_name: Candidatus Competibacter denitrificans


organism_name: Saprospiraceae bacterium


organism_name: Dermatophilaceae bacterium


organism_name: Phycicoccus elongatus


organism_name: Candidatus Competibacter sp.


organism_name: Marmoricola sp.


organism_name: Acidimicrobiales bacterium


organism_name: Micropruina sp.


organism_name: Propioniciclava sp.


organism_name: Ornithinibacter sp.


organism_name: Trichococcus flocculiformis


organism_name: Microthrixaceae bacterium


organism_name: Propionicimonas sp.


organism_name: Novosphingobium sp.


organism_name: Saccharimonadales bacterium (SeqCode)


organism_name: Rhodoglobus sp.


organism_name: Tabrizicola sp.


organism_name: Chitinophagaceae bacterium


organism_name: Ilumatobacteraceae bacterium


organism_name: Aestuariivirga sp.


organism_name: Dermatophilaceae bacterium


organism_name: Solirubrobacterales bacterium


organism_name: Kineosporiaceae bacterium


organism_name: Saprospiraceae bacterium


organism_name: Cyclobacteriaceae bacterium


organism_name: Nostocoides sp.


excluded_from_refseq: derived from metagenome; many frameshifted proteins


asm_submitter: Univerisity of Arizona

infraspecific_name: strain=CCUG 64613

organism_name: Sneathia vaginalis


infraspecific_name: strain=CCUG 52978

organism_name: Sneathia sanguinegens


asm_submitter: University of Florida

excluded_from_refseq: annotation fails completeness check

infraspecific_name: strain=Rattle Snake

organism_name: Salmonella enterica subsp. arizonae serovar 40:z36:-


asm_submitter: PET-Risk

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Escherichia coli


infraspecific_name: strain=Anole

organism_name: Salmonella enterica subsp. enterica


asm_submitter: Yangzhou univeristy


organism_name: Enterobacter hormaechei


asm_submitter: University of Malaya

excluded_from_refseq: fragmented assembly

organism_name: Burkholderia pseudomallei


organism_name: Escherichia fergusonii


asm_submitter: International Islamic University Malaysia Kuantan Campus

infraspecific_name: strain=NaF-IIUM P13L

isolate: striped catfish

organism_name: Aeromonas hydrophila


infraspecific_name: strain=NaF-IIUM P14J

organism_name: Aeromonas dhakensis


infraspecific_name: strain=NaF-IIUM T2U

organism_name: Aeromonas veronii


asm_submitter: College of Life Sciences

organism_name: Aeromonas enteropelogenes


organism_name: Aeromonas rivipollensis


asm_submitter: LMU Munich

organism_name: Pseudomonas ogarae


organism_name: Pseudomonas alvandae


asm_submitter: Huazhong Agricultural University

organism_name: Vibrio parahaemolyticus


organism_name: Pseudomonas azerbaijanorientalis


asm_submitter: Bangladesh Council of Scientific and Industrial Research

organism_name: Ligilactobacillus agilis


organism_name: Pseudomonas marginalis


asm_submitter: University of Shanghai for Science and Technology

organism_name: Bacillus subtilis


organism_name: Rhizobium ruizarguesonis


asm_submitter: Pukyong National University

organism_name: Bacillus velezensis


asm_submitter: King Mongkuts Institute of Technology Ladkrabang (KMITL)

isolate: Acetes erythraeus

organism_name: Lactiplantibacillus plantarum


asm_submitter: Shanxi medical university

organism_name: Psychrobacter sp. CX14


organism_name: Psychrobacter sp. CX18


organism_name: Psychrobacter sp. CX16


organism_name: Psychrobacter sp. CX21


organism_name: Psychrobacter sp. CX97


organism_name: Psychrobacter sp. CX90


asm_submitter: national health research institutes

organism_name: Klebsiella pneumoniae


organism_name: Roseiflexaceae bacterium


organism_name: Beijerinckiaceae bacterium


organism_name: Microthrixaceae bacterium


organism_name: Candidatus Nitrotoga sp.


organism_name: Candidatus Nanopelagicales bacterium


organism_name: Flavobacteriales bacterium


organism_name: Ilumatobacteraceae bacterium


organism_name: Propionicimonas sp.


organism_name: Saccharimonas aalborgensis (SeqCode)


organism_name: Giesbergeria sp.


organism_name: Microbacterium sp.


organism_name: Saprospiraceae bacterium


organism_name: Propioniciclava sp.


organism_name: Leucobacter sp.


organism_name: Ferruginibacter sp.


organism_name: Anaerolineales bacterium


asm_submitter: Oswaldo Cruz Institute

organism_name: Klebsiella pneumoniae


asm_submitter: Universidad de Antofagasta

organism_name: Streptomyces fildesensis


asm_submitter: Institute of Molecular Genetics and Genetic Engineering

organism_name: [Clostridium] symbiosum


organism_name: Pilosibacter sp. NGB245


asm_submitter: Qinghai University

organism_name: Bacillus velezensis


asm_submitter: Nanjing Agricultural University

organism_name: Bordetella bronchiseptica


asm_submitter: National Yang Ming Chiao Tung University

organism_name: Acinetobacter nosocomialis


organism_name: Acinetobacter soli


asm_submitter: Chinese Academy of Sciences

organism_name: Stutzerimonas stutzeri


asm_submitter: Universidad de Las Americas (UDLA)

organism_name: Mycobacteroides abscessus


asm_submitter: Zhejiang Chinese Medical University


asm_submitter: Universidad de Guadalajara

organism_name: Staphylococcus aureus


excluded_from_refseq: genome length too large


asm_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine

excluded_from_refseq: from large multi-isolate project

organism_name: Helicobacter pylori


asm_submitter: Punjab Agricultural University

organism_name: Alcaligenes nematophilus


asm_submitter: Northwest A&F Universit

organism_name: Novosphingobium pentaromativorans


asm_submitter: Rajamangala University of Technology Thanyaburi

infraspecific_name: strain=57 M1PS-17

organism_name: Streptomyces hygroscopicus


asm_submitter: Nofima

organism_name: Carnobacterium divergens


asm_submitter: Universiti Malaya

organism_name: Enterobacter cloacae


asm_submitter: UNAM

isolate: Rat colon

organism_name: Ligilactobacillus faecis


asm_submitter: Zhejjiang Marine Fisheries Research Institution

infraspecific_name: strain=KPT 8-3

organism_name: Ruegeria lacuscaerulensis


infraspecific_name: strain=KPT 27-37

organism_name: Phaeobacter italicus


asm_submitter: Foshan University

organism_name: Lactiplantibacillus plantarum


infraspecific_name: strain=WYP


asm_submitter: Croatian veterinary institute

organism_name: Tenacibaculum maritimum


asm_submitter: UKZN

organism_name: Escherichia coli


asm_submitter: Centers for Disease Control and Prevention

organism_name: Streptococcus pneumoniae


asm_submitter: Guangxi University of Chinese Medicine

organism_name: Mesoflavibacter sp. GXIMD23402


asm_submitter: School of Pharmacy and Pharmaceutical Sciences, University of Cape coast

organism_name: Enterococcus faecalis


organism_name: Staphylococcus haemolyticus


organism_name: Enterobacter hormaechei


organism_name: Bacillus cereus


organism_name: Enterococcus hirae


organism_name: Klebsiella pneumoniae


organism_name: Enterococcus faecium


asm_submitter: Henan Provincial Chest Hospital


organism_name: Klebsiella michiganensis


organism_name: Klebsiella quasipneumoniae


asm_submitter: The University of Alabama

infraspecific_name: strain=chylan

organism_name: Pseudomonas kurunegalensis


infraspecific_name: strain=Serotype 33F ST10168


asm_submitter: Aston University


asm_submitter: nanjing agriculture university

organism_name: Sphingopyxis sp. 550B


asm_submitter: Guangxi University


excluded_from_refseq: genus undefined

organism_name: Sphingomonadaceae bacterium 550F


asm_submitter: University of Veterinary Medicine Budapest


organism_name: Novosphingobium sp. 550D


asm_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine

organism_name: Helicobacter pylori


asm_submitter: China Agricultural University

organism_name: Candidatus Neoarthromitus sp.


asm_submitter: ANSES

organism_name: Acinetobacter baumannii


asm_submitter: UFMG

organism_name: Lactobacillus paragasseri


annotation_name: Annotation submitted by University of Nebraska-Lincoln

annotation_provider: University of Nebraska-Lincoln

asm_submitter: University of Nebraska-Lincoln

organism_name: Candidatus Limousia pullorum


asm_submitter: University Hospital Muenster

organism_name: Staphylococcus borealis


organism_name: Staphylococcus haemolyticus


asm_submitter: Faculty of Science, Prince of Songkla University


asm_submitter: University of Southern Denmark

excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Prolixibacteraceae bacterium


organism_name: Clostridiaceae bacterium


organism_name: Bacteroidales bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: Lentimicrobium sp.


organism_name: Lacrimispora sp.


organism_name: Anaerotignaceae bacterium


organism_name: Humidesulfovibrio sp.


organism_name: Sedimentibacter sp.


organism_name: Geobacteraceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; many frameshifted proteins

organism_name: Propionivibrio sp.


organism_name: Bacillota bacterium


organism_name: Oscillospiraceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Sporomusa sp.


organism_name: Sphaerochaetaceae bacterium


excluded_from_refseq: derived from metagenome

organism_name: Cloacimonas sp. (SeqCode)


organism_name: Paludibacter sp.


organism_name: Tenuifilaceae bacterium


organism_name: Lutisporaceae bacterium


organism_name: Methanomassiliicoccales archaeon


organism_name: Prolixibacteraceae bacterium


organism_name: Clostridiaceae bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: Eubacteriales bacterium


organism_name: Lacrimispora sp.


organism_name: Anaerotignum sp.


organism_name: Geosyntrophus acetoxidans (SeqCode)


organism_name: Candidatus Fimivivens sp.


organism_name: Sedimentibacter sp.


organism_name: Desulforhopalus sp.


organism_name: Humidesulfovibrio sp.


organism_name: Methanothrix sp.


organism_name: Desulfobulbus sp.


organism_name: Fusibacter sp.


organism_name: Lentimicrobium sp.


organism_name: Bacteroidales bacterium


organism_name: Methanosarcina sp.


organism_name: Staphylococcus haemolyticus


organism_name: Staphylococcus borealis


asm_submitter: Washington University in St. Louis

organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


excluded_from_refseq: unverified source organism


asm_submitter: National Center for Biotechnology Information

organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Havana


organism_name: Salmonella enterica subsp. enterica serovar Aberdeen


organism_name: Salmonella enterica subsp. enterica serovar Hvittingfoss


organism_name: Salmonella enterica subsp. enterica serovar Typhi


organism_name: Salmonella enterica subsp. enterica serovar Virchow


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Ohio


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


organism_name: Salmonella enterica subsp. enterica serovar Senftenberg


organism_name: Salmonella enterica subsp. enterica serovar Agona


asm_submitter: University of Minnesoate

infraspecific_name: strain=ATCC 12633 + pCLCF-high

organism_name: Pseudomonas putida


infraspecific_name: strain=ATCC 12633 + pCLCF-low


organism_name: Staphylococcus borealis


organism_name: Salmonella enterica subsp. enterica serovar Bovismorbificans


organism_name: Salmonella enterica subsp. enterica serovar Birkenhead


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A


organism_name: Staphylococcus haemolyticus


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Havana


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Virchow


excluded_from_refseq: many frameshifted proteins


asm_submitter: This research was funded by the French Agency for Food, Environmental and Occupational Health Safety (ANSES), by the PHC-Utique/Campus France (AMR1Health, grant no. 46213QA). S.A. received a fellowship from the ministry of higher education in Tunisia and the University Paris-Sud, France. R.A.B., L.D., and T.N. are members of the Laboratory of Excellence in Research on Medication and Innovative Therapeutics (LERMIT), supported by a grant from the French National Research Agency (ANR-10-LABX-33)

organism_name: Pseudomonas sp. Tun-23181


organism_name: Salmonella enterica subsp. enterica serovar Bareilly


organism_name: Salmonella enterica subsp. enterica serovar Aberdeen


organism_name: Salmonella enterica subsp. enterica serovar Ordonez


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica


organism_name: Salmonella enterica subsp. enterica serovar Hvittingfoss


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Typhi


organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


organism_name: Salmonella enterica subsp. enterica serovar Birkenhead


organism_name: Salmonella enterica subsp. enterica serovar Litchfield


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Salmonella enterica subsp. enterica serovar Virchow


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Salmonella enterica subsp. enterica serovar Havana


organism_name: Salmonella enterica subsp. enterica serovar Bareilly


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Ohio


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A


organism_name: Salmonella enterica subsp. enterica serovar Chailey


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Typhi


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Hvittingfoss


organism_name: Salmonella enterica subsp. enterica


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Birkenhead


organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Salmonella enterica subsp. enterica serovar Agona


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Javiana


organism_name: Salmonella enterica subsp. enterica serovar Havana


organism_name: Salmonella enterica subsp. enterica serovar Bareilly


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A


organism_name: Salmonella enterica subsp. enterica serovar Aberdeen


organism_name: Salmonella enterica subsp. enterica serovar Rissen


organism_name: Salmonella enterica subsp. enterica serovar Virchow


organism_name: Salmonella enterica subsp. enterica serovar Hvittingfoss


asm_submitter: Shenzhen Bay Laboratory

infraspecific_name: strain=IAM 14872

organism_name: Tistrella mobilis


asm_submitter: University of Shanghai for Science and Technology

organism_name: Lactiplantibacillus plantarum


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


asm_submitter: university of shanghai for science and technology


asm_submitter: Yangzhou University

organism_name: Bacillus albus


asm_submitter: CSIR-IMTECH

organism_name: Corallococcus interemptor


asm_submitter: University of Richmond

organism_name: Alcaligenes parafaecalis


asm_submitter: Chinese Academy of Agricultural Sciences

excluded_from_refseq: missing rRNA genes; missing tRNA genes

organism_name: Mycoplasmopsis bovis


infraspecific_name: strain=Madison


asm_submitter: Georg-August-University Goettingen

organism_name: Delftia acidovorans


organism_name: Chromobacterium sp. HL1


asm_submitter: Murdoch University

organism_name: Salinivibrio costicola


organism_name: Salinivibrio kushneri


asm_submitter: Fujian Agriculture and Forestry University

organism_name: Pseudomonas plecoglossicida


asm_submitter: INRAE

organism_name: Rhizobium ruizarguesonis


organism_name: Rhizobium leguminosarum bv. viciae


asm_submitter: Federal University of Sergipe

infraspecific_name: strain=San 1.5

organism_name: Lysinibacillus xylanilyticus


asm_submitter: University of ShangHai for Science and Technologhy


asm_submitter: Changsha University of Science and Technology

organism_name: Lacticaseibacillus paracasei


organism_name: Pediococcus acidilactici


asm_submitter: National Center for Biotechnology Information


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Typhi


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Virchow


organism_name: Salmonella enterica subsp. enterica serovar Bredeney


organism_name: Salmonella enterica subsp. enterica serovar Havana


organism_name: Salmonella enterica subsp. enterica serovar Oranienburg


organism_name: Salmonella enterica subsp. enterica serovar Birkenhead


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A


organism_name: Salmonella enterica subsp. enterica serovar Muenchen


organism_name: Salmonella enterica subsp. enterica serovar Brancaster


organism_name: Salmonella enterica subsp. enterica serovar Hvittingfoss


organism_name: Salmonella enterica subsp. enterica serovar Panama


organism_name: Salmonella enterica subsp. enterica serovar Singapore


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Lexington


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Salmonella enterica subsp. enterica serovar Give


organism_name: Salmonella enterica subsp. enterica serovar Typhi


organism_name: Salmonella enterica subsp. enterica serovar Bareilly


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Salmonella enterica subsp. enterica serovar Birkenhead


organism_name: Salmonella enterica subsp. enterica serovar Mbandaka


organism_name: Salmonella enterica subsp. enterica serovar Havana


asm_submitter: Public Health England

organism_name: Campylobacter jejuni


asm_submitter: Health Protection Agency

organism_name: Listeria monocytogenes


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


asm_submitter: CDC


organism_name: Haemophilus influenzae


asm_submitter: The University of Hong Kong

organism_name: Alistipes putredinis


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Alistipes shahii


organism_name: Oscillospiraceae bacterium


organism_name: Candidatus Limisoma sp.


organism_name: Bacteroides caccae


organism_name: Parabacteroides merdae


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Ruthenibacterium lactatiformans


organism_name: Xylanibacter rarus


organism_name: Ruminococcoides intestinale


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Alistipes ihumii


organism_name: Blautia wexlerae


organism_name: Akkermansia muciniphila


organism_name: Segatella copri


organism_name: Desulfovibrio piger


organism_name: Faecalibacterium tardum


organism_name: Bacteroides ndongoniae


organism_name: Candidatus Alistipes pullicola


organism_name: Succiniclasticum sp.


organism_name: Faecalibacterium longum


organism_name: Odoribacter splanchnicus


organism_name: Faecalibacterium duncaniae


organism_name: Paraprevotella xylaniphila


organism_name: Candidatus Aphodousia faecalis


organism_name: Bacteroides stercoris


organism_name: Bacteroides uniformis


organism_name: Alistipes putredinis


organism_name: Bilophila wadsworthia


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Megamonas funiformis


organism_name: Candidatus Fimenecus sp.


organism_name: Candidatus Limisoma sp.


organism_name: Faecalibacterium sp.


organism_name: Xylanibacter rarus


organism_name: Parabacteroides distasonis


organism_name: Sutterella wadsworthensis


organism_name: Escherichia coli


organism_name: Alistipes shahii


organism_name: Phocaeicola vulgatus


organism_name: Megasphaera stantonii


organism_name: Shigella flexneri


organism_name: Phocaeicola sp.


organism_name: Phocaeicola plebeius


organism_name: Agathobacter rectalis


organism_name: Gemmiger formicilis


organism_name: Ruminococcoides intestinale


organism_name: Alistipes onderdonkii


organism_name: Paraprevotella clara


organism_name: Bacteroides eggerthii


organism_name: Anaerotignum faecicola


organism_name: Phascolarctobacterium succinatutens


organism_name: Akkermansia muciniphila


organism_name: Alistipes putredinis


organism_name: Faecalibacterium longum


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: Acutalibacteraceae bacterium


organism_name: Bilophila wadsworthia


organism_name: Bacteroides uniformis


organism_name: Bacteroides xylanisolvens


organism_name: Sutterella sp.


organism_name: Mediterraneibacter torques


organism_name: Flavonifractor plautii


organism_name: Escherichia coli


organism_name: Hominicoprocola sp.


organism_name: Bacteroides nordii


organism_name: Vescimonas coprocola


organism_name: Alistipes shahii


organism_name: Anaerotignum faecicola


organism_name: Alistipes ihumii


organism_name: Agathobacter rectalis


organism_name: Ruthenibacterium lactatiformans


organism_name: Candidatus Alistipes avistercoris


organism_name: Hominicoprocola fusiformis


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Hominimerdicola sp.


organism_name: Barnesiella intestinihominis


organism_name: Waltera acetigignens


organism_name: Alistipes communis


organism_name: Bilophila wadsworthia


organism_name: Eubacterium sp.


organism_name: Escherichia coli


organism_name: Gallintestinimicrobium propionicum


organism_name: Anaerostipes amylophilus


organism_name: Parabacteroides distasonis


organism_name: Faecalibacterium sp.


organism_name: Phocaeicola vulgatus


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes putredinis


organism_name: Dialister invisus


organism_name: Faecalibacterium longum


organism_name: Phascolarctobacterium faecium


organism_name: Alistipes onderdonkii


organism_name: Bacteroides uniformis


organism_name: Hominisplanchenecus faecis


organism_name: Huintestinicola butyrica


excluded_from_refseq: contaminated; derived from metagenome; genome length too small

organism_name: Roseburia faecis


organism_name: Lachnospira sp.


organism_name: Bacteroidaceae bacterium


organism_name: Coprobacter fastidiosus


organism_name: Christensenellales bacterium


organism_name: Coprococcus sp.


organism_name: Akkermansia muciniphila


organism_name: [Ruminococcus] lactaris


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Clostridia bacterium


organism_name: Parabacteroides merdae


organism_name: Faecalibacterium prausnitzii


organism_name: Oscillospiraceae bacterium


organism_name: Ellagibacter isourolithinifaciens


organism_name: Butyricimonas virosa


organism_name: Candidatus Apopatocola sp.


organism_name: Bacteroides caccae


organism_name: Gemmiger formicilis


organism_name: Alistipes onderdonkii


organism_name: Ruminococcoides intestinale


organism_name: Gallintestinimicrobium propionicum


organism_name: Duodenibacillus sp.


organism_name: Candidatus Woodwardiibium sp.


organism_name: Phocaeicola dorei


organism_name: Vescimonas sp.


organism_name: Bifidobacterium longum


organism_name: Bacteroides eggerthii


organism_name: Bacilli bacterium


organism_name: Faecalibacterium longum


organism_name: Candidatus Neochristensenella sp.


organism_name: Parabacteroides distasonis


organism_name: Hominicoprocola sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Faecalibacterium duncaniae


organism_name: Desulfovibrio sp.


organism_name: Paraprevotella clara


organism_name: Fusicatenibacter saccharivorans


organism_name: Acutalibacteraceae bacterium


organism_name: Eubacterium sp.


organism_name: Candidatus Enterenecus sp.


organism_name: Gemmiger qucibialis


organism_name: Alistipes shahii


organism_name: Ruminococcus callidus


organism_name: Agathobacter rectalis


organism_name: Pseudoruminococcus massiliensis


organism_name: Methanobrevibacter smithii


organism_name: Alphaproteobacteria bacterium


organism_name: Roseburia intestinalis


organism_name: Mailhella sp.


organism_name: Alistipes putredinis


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Coprococcus aceti


organism_name: Ruminococcus intestinalis


organism_name: Akkermansia muciniphila


organism_name: Gordonibacter pamelaeae


organism_name: Alistipes finegoldii


organism_name: Jutongia sp.


organism_name: Coprobacter fastidiosus


organism_name: Escherichia coli


organism_name: Candidatus Flemingiibacterium sp.


organism_name: Roseburia amylophila


organism_name: Bilophila wadsworthia


organism_name: Parabacteroides distasonis


organism_name: Bacteroides eggerthii


organism_name: Odoribacter sp.


organism_name: Barnesiella intestinihominis


organism_name: Faecalibacterium duncaniae


organism_name: Parasutterella excrementihominis


organism_name: Alistipes putredinis


organism_name: Agathobacter rectalis


organism_name: Oscillospiraceae bacterium


organism_name: Coprococcus sp.


organism_name: Phocaeicola vulgatus


organism_name: Phascolarctobacterium faecium


organism_name: Mailhella sp.


organism_name: Bacteroides uniformis


organism_name: Segatella copri


organism_name: Alistipes onderdonkii


organism_name: Parabacteroides merdae


organism_name: Congzhengia minquanensis


organism_name: Enterocloster sp.


organism_name: Desulfovibrio sp.


organism_name: Mediterraneibacter torques


organism_name: Hominicoprocola sp.


organism_name: Bifidobacterium longum


organism_name: Candidatus Caccoplasma intestinavium


organism_name: Oscillibacter sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Alistipes putredinis


organism_name: Hominicoprocola fusiformis


organism_name: [Eubacterium] siraeum


organism_name: Barnesiella intestinihominis


organism_name: Alphaproteobacteria bacterium


organism_name: Vescimonas coprocola


organism_name: Acutalibacteraceae bacterium


organism_name: Collinsella aerofaciens


organism_name: Parabacteroides merdae


organism_name: Faecalibacterium duncaniae


organism_name: Bifidobacterium catenulatum


organism_name: Parabacteroides distasonis


organism_name: Bilophila wadsworthia


organism_name: Sutterella wadsworthensis


organism_name: Bacteroidaceae bacterium


organism_name: Alistipes finegoldii


organism_name: Bacteroides uniformis


organism_name: Agathobacter rectalis


organism_name: Gemmiger formicilis


organism_name: Lactococcus lactis


organism_name: Alistipes ihumii


organism_name: Alistipes onderdonkii


asm_submitter: FDA-CVM

excluded_from_refseq: from large multi-isolate project

organism_name: Vibrio metschnikovii


organism_name: Aeromonas salmonicida


organism_name: Faecalibacterium prausnitzii


organism_name: Bacteroides clarus


organism_name: Gemmiger qucibialis


organism_name: Enterocloster bolteae


organism_name: Coprobacter fastidiosus


organism_name: Parabacteroides goldsteinii


organism_name: Butyricimonas paravirosa


organism_name: Alphaproteobacteria bacterium


organism_name: Parabacteroides distasonis


organism_name: Ruminococcus intestinalis


organism_name: Waltera acetigignens


organism_name: Enterocloster sp.


organism_name: Odoribacter splanchnicus


organism_name: Vescimonas coprocola


organism_name: Agathobacter rectalis


organism_name: Bacteroides finegoldii


organism_name: Phascolarctobacterium faecium


organism_name: Alistipes onderdonkii


organism_name: Lachnospiraceae bacterium


organism_name: Klebsiella pneumoniae


organism_name: Hominisplanchenecus faecis


organism_name: Sutterella wadsworthensis


organism_name: Bacteroides caccae


organism_name: Mediterraneibacter torques


organism_name: Bacteroides xylanisolvens


organism_name: Bacteroides cellulosilyticus


organism_name: Barnesiella intestinihominis


organism_name: Phocaeicola dorei


organism_name: Brotaphodocola sp.


organism_name: Parabacteroides merdae


organism_name: Bacteroides uniformis


organism_name: Anaerotignum faecicola


organism_name: Alistipes sp.


organism_name: Faecalibacterium longum


organism_name: Roseburia inulinivorans


organism_name: Eubacterium sp.


organism_name: Faecalibacterium duncaniae


organism_name: Bilophila wadsworthia


organism_name: Alistipes putredinis


organism_name: Escherichia coli


organism_name: Desulfovibrio sp.


organism_name: Clostridium fessum


organism_name: Bacteroides stercoris


organism_name: Prevotella sp.


organism_name: Parabacteroides distasonis


organism_name: Hominicoprocola fusiformis


organism_name: Candidatus Aphodousia sp.


organism_name: Agathobacter rectalis


organism_name: Bacteroides uniformis


organism_name: Bacteroides caccae


organism_name: Sutterella sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Phocaeicola plebeius


organism_name: Alitiscatomonas aceti


organism_name: Anaerovibrio sp.


organism_name: Faecalibacterium duncaniae


organism_name: Candidatus Cryptobacteroides sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Anaerotignum faecicola


organism_name: Bilophila wadsworthia


organism_name: Waltera sp.


organism_name: Paraprevotella clara


organism_name: Anaerobutyricum hallii


organism_name: Candidatus Fimenecus sp.


organism_name: Klebsiella pneumoniae


organism_name: Bacilli bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: Oscillospiraceae bacterium


organism_name: Butyricimonas virosa


organism_name: Anaerovoracaceae bacterium


organism_name: Dialister succinatiphilus


organism_name: Candidatus Scatomorpha pullistercoris


organism_name: Coprococcus aceti


organism_name: Phocaeicola sp.


organism_name: Methanomassiliicoccus sp.


organism_name: Ruminococcus sp.


organism_name: Faecalibacterium longum


organism_name: Leyella lascolaii


organism_name: Christensenellales bacterium


organism_name: [Eubacterium] siraeum


organism_name: [Bacteroides] pectinophilus


organism_name: Candidatus Aphodomorpha sp.


organism_name: Klebsiella pneumoniae


organism_name: Coprococcus ammoniilyticus


organism_name: Mediterraneibacter gnavus


organism_name: Bacteroides fragilis


organism_name: Enterocloster bolteae


organism_name: Sutterella wadsworthensis


organism_name: Parabacteroides distasonis


organism_name: Dorea amylophila


organism_name: Hafnia paralvei


organism_name: Phascolarctobacterium faecium


organism_name: Akkermansia muciniphila


organism_name: Segatella copri


organism_name: Odoribacter splanchnicus


organism_name: Phocaeicola sp.


organism_name: Dialister invisus


organism_name: Acutalibacteraceae bacterium


organism_name: Paraprevotella clara


organism_name: Faecalibacterium tardum


organism_name: Barnesiella intestinihominis


organism_name: Parabacteroides merdae


organism_name: Klebsiella pneumoniae


organism_name: Hominimerdicola sp.


organism_name: Hallella mizrahii


organism_name: Alistipes putredinis


organism_name: Phocaeicola coprocola


organism_name: Bacteroides uniformis


organism_name: Alistipes indistinctus


organism_name: Gemmiger sp.


organism_name: Bilophila wadsworthia


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes hominis


organism_name: Paramuribaculum sp.


organism_name: Roseburia faecis


organism_name: Faecalibacterium taiwanense


organism_name: Desulfovibrio piger


organism_name: Ruminococcoides intestinale


organism_name: Muribaculaceae bacterium


organism_name: Aristaeellaceae bacterium


organism_name: Hominicoprocola sp.


organism_name: Alistipes shahii


organism_name: Agathobacter rectalis


organism_name: Dialister sp.


organism_name: Alistipes onderdonkii


organism_name: Oscillospiraceae bacterium


organism_name: Acidaminococcus fermentans


organism_name: Faecalibacterium duncaniae


organism_name: Faecalibacterium longum


organism_name: Negativibacillus sp.


organism_name: Candidatus Fimenecus sp.


organism_name: Collinsella sp.


organism_name: Vescimonas sp.


organism_name: Klebsiella pneumoniae


organism_name: Angelakisella sp.


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Megasphaera elsdenii


organism_name: Escherichia coli


organism_name: Gemmiger sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Aristaeellaceae bacterium


organism_name: Acidaminococcus timonensis


organism_name: Akkermansia biwaensis


organism_name: Enterocloster sp.


organism_name: Christensenellales bacterium


organism_name: Brotocaccenecus cirricatena


organism_name: Paraprevotella clara


organism_name: Eubacterium sp.


organism_name: Parabacteroides johnsonii


organism_name: Desulfovibrio sp.


organism_name: Odoribacter splanchnicus


organism_name: Waltera acetigignens


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: Clostridium sp.


organism_name: Haemophilus sp.


organism_name: Bacteroides eggerthii


excluded_from_refseq: unverified source organism; derived from metagenome; fragmented assembly; genome length too small

organism_name: Lacrimispora saccharolytica


excluded_from_refseq: derived from metagenome

organism_name: Barnesiella intestinihominis


organism_name: Mediterraneibacter torques


organism_name: Alistipes dispar


organism_name: Phascolarctobacterium succinatutens


organism_name: Bacteroides clarus


organism_name: Duodenibacillus sp.


organism_name: Vibrio cholerae


organism_name: Faecalibacterium longum


organism_name: Lactobacillus delbrueckii


organism_name: Bilophila sp.


organism_name: Candidatus Sutterella merdavium


organism_name: Hominimerdicola sp.


organism_name: Bacteroides uniformis


organism_name: Parabacteroides distasonis


organism_name: Butyricimonas faecihominis


organism_name: Alistipes onderdonkii


organism_name: Megasphaera massiliensis


organism_name: Acidaminococcus intestini


organism_name: Ruminococcoides intestinale


organism_name: Barnesiella intestinihominis


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Alistipes ihumii


organism_name: Bilophila wadsworthia


organism_name: Eubacterium sp.


organism_name: Alistipes putredinis


organism_name: Gemmiger sp.


organism_name: Bifidobacterium adolescentis


organism_name: Phocaeicola massiliensis


organism_name: Parabacteroides merdae


organism_name: Acutalibacteraceae bacterium


organism_name: Monoglobaceae bacterium


organism_name: Bacteroides clarus


organism_name: Prevotella lacticifex


organism_name: Candidatus Aphodousia sp.


organism_name: Hominimerdicola aceti


organism_name: Vibrio diabolicus


organism_name: Vibrio parahaemolyticus


organism_name: Agathobacter rectalis


organism_name: Alistipes onderdonkii


organism_name: Faecalibacterium duncaniae


organism_name: Vibrio alginolyticus


organism_name: Faecalibacterium taiwanense


organism_name: Roseburia faecis


organism_name: Oscillospiraceae bacterium


organism_name: Phocaeicola vulgatus


organism_name: Parabacteroides distasonis


organism_name: Hominicoprocola fusiformis


organism_name: Akkermansia muciniphila


organism_name: Waltera acetigignens


organism_name: Blautia wexlerae


organism_name: Bifidobacterium longum


organism_name: Streptococcus salivarius


organism_name: Veillonella atypica


organism_name: Parabacteroides merdae


organism_name: Agathobaculum sp.


organism_name: Agathobacter rectalis


organism_name: Mesosutterella multiformis


organism_name: Vibrio parahaemolyticus


organism_name: Enterobacter hormaechei


organism_name: Bacteroides thetaiotaomicron


organism_name: Bacteroides uniformis


organism_name: Phascolarctobacterium succinatutens


organism_name: Roseburia faecis


organism_name: Mediterraneibacter gnavus


organism_name: Faecalibacterium longum


organism_name: Ruminococcus intestinalis


organism_name: Sutterella sp.


organism_name: Odoribacter splanchnicus


organism_name: Faecalibacterium taiwanense


organism_name: Alistipes hominis


organism_name: Gemmiger qucibialis


organism_name: Vibrio cholerae


organism_name: Escherichia coli


organism_name: Parabacteroides merdae


organism_name: Alistipes putredinis


organism_name: Phocaeicola vulgatus


organism_name: Alistipes communis


organism_name: Phocaeicola massiliensis


organism_name: Oscillibacter sp.


organism_name: Oscillospiraceae bacterium


organism_name: Enterobacter hormaechei


organism_name: Bacteroides ovatus


organism_name: Parabacteroides distasonis


organism_name: Roseburia faecis


organism_name: Acutalibacteraceae bacterium


organism_name: Phascolarctobacterium faecium


organism_name: Dialister invisus


organism_name: Bacteroides thetaiotaomicron


organism_name: Barnesiella intestinihominis


organism_name: Bifidobacterium catenulatum


organism_name: Lacrimispora saccharolytica


organism_name: Faecalibacterium longum


organism_name: Alistipes onderdonkii


organism_name: Hungatella effluvii


organism_name: Megasphaera massiliensis


organism_name: Streptococcus salivarius


organism_name: Bacteroides uniformis


organism_name: Bifidobacterium longum


organism_name: Fusicatenibacter saccharivorans


organism_name: Escherichia coli


organism_name: Alphaproteobacteria bacterium


organism_name: Odoribacter splanchnicus


organism_name: Negativibacillus sp.


organism_name: Alistipes finegoldii


organism_name: Faecalibacterium prausnitzii


organism_name: Anaerotruncus sp.


asm_submitter: kyung hee university

organism_name: Saccharopolyspora sp. PG10


organism_name: Parabacteroides chongii


organism_name: Acutalibacteraceae bacterium


organism_name: Alistipes inops


organism_name: Christensenellales bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Bilophila wadsworthia


organism_name: Akkermansia muciniphila


organism_name: Alistipes ihumii


organism_name: Hominicoprocola sp.


organism_name: Waltera sp.


organism_name: Citrobacter freundii


organism_name: Barnesiella intestinihominis


organism_name: Parabacteroides johnsonii


organism_name: Alloprevotella sp.


organism_name: Alistipes communis


organism_name: Vescimonas sp.


organism_name: Alistipes shahii


organism_name: Mediterraneibacter faecis


organism_name: Mediterraneibacter torques


organism_name: Alistipes indistinctus


organism_name: Methanobrevibacter smithii


organism_name: Muribaculaceae bacterium


organism_name: Phascolarctobacterium faecium


organism_name: Ruminococcus sp.


organism_name: Sutterella wadsworthensis


organism_name: Agathobacter rectalis


organism_name: Alphaproteobacteria bacterium


organism_name: Vibrio parahaemolyticus


organism_name: Vibrio diabolicus


organism_name: Bacteroides uniformis


organism_name: Desulfovibrio fairfieldensis


organism_name: Ruminococcoides intestinale


organism_name: Gemmiger sp.


organism_name: Phocaeicola coprocola


organism_name: Hominisplanchenecus faecis


organism_name: Parabacteroides distasonis


organism_name: Phocaeicola vulgatus


organism_name: Alistipes putredinis


organism_name: Acidaminococcus fermentans


organism_name: Butyricimonas paravirosa


organism_name: Prevotella sp.


organism_name: Bilophila wadsworthia


organism_name: Barnesiella intestinihominis


organism_name: Xylanibacter sp.


organism_name: Eubacterium ramulus


organism_name: Candidatus Limisoma sp.


organism_name: Megasphaera elsdenii


organism_name: Parabacteroides faecalis


organism_name: Phocaeicola sp.


organism_name: Ruminococcus callidus


organism_name: Phocaeicola plebeius


organism_name: Enterobacter bugandensis


organism_name: Phocaeicola massiliensis


organism_name: Candidatus Barnesiella merdigallinarum


organism_name: Alistipes sp.


organism_name: Phocaeicola vulgatus


organism_name: Segatella copri


organism_name: Sutterella wadsworthensis


organism_name: Alloprevotella sp.


organism_name: Dialister sp.


organism_name: Parabacteroides distasonis


organism_name: Mitsuokella jalaludinii


organism_name: Caecibacteroides pullorum


organism_name: Mitsuokella multacida


organism_name: Parabacteroides merdae


organism_name: Paraprevotella clara


organism_name: Streptococcus sp.


organism_name: Bacteroidaceae bacterium


organism_name: Bacteroides uniformis


organism_name: Ruminococcoides intestinale


organism_name: Waltera sp.


organism_name: Clostridia bacterium


organism_name: Gemmiger qucibialis


organism_name: Acutalibacteraceae bacterium


organism_name: Roseburia inulinivorans


organism_name: Phascolarctobacterium succinatutens


organism_name: Enterocloster sp.


organism_name: Parabacteroides distasonis


organism_name: Bacteroides sp.


organism_name: Oscillospiraceae bacterium


organism_name: Coprococcus intestinihominis


organism_name: Duodenibacillus massiliensis


organism_name: Pilosibacter fragilis


organism_name: Ligilactobacillus ruminis


organism_name: Waltera acetigignens


organism_name: Hominimerdicola sp.


organism_name: Gemmiger formicilis


organism_name: Bacteroides ovatus


organism_name: Agathobaculum butyriciproducens


organism_name: Bacteroides finegoldii


organism_name: Bifidobacterium longum


organism_name: Phocaeicola vulgatus


organism_name: Agathobacter rectalis


organism_name: Bacteroides nordii


organism_name: Phocaeicola dorei


organism_name: Gallintestinimicrobium propionicum


organism_name: Alistipes putredinis


organism_name: Bacilli bacterium


organism_name: Frisingicoccus sp.


organism_name: Pseudoruminococcus massiliensis


organism_name: Alistipes communis


organism_name: Bacteroides uniformis


organism_name: Waltera acetigignens


organism_name: Parabacteroides distasonis


organism_name: [Eubacterium] siraeum


organism_name: Porcipelethomonas ammoniilytica


organism_name: Alistipes finegoldii


organism_name: Hominimerdicola aceti


organism_name: Butyricimonas virosa


organism_name: Oscillospiraceae bacterium


organism_name: Parabacteroides johnsonii


organism_name: Candidatus Fimenecus sp.


organism_name: Candidatus Alistipes avistercoris


organism_name: Candidatus Stercorousia sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Gemmiger qucibialis


organism_name: Odoribacter splanchnicus


organism_name: Parasutterella excrementihominis


organism_name: Barnesiella intestinihominis


organism_name: Vescimonas sp.


organism_name: Alistipes ihumii


organism_name: Bacteroides thetaiotaomicron


organism_name: Bilophila sp.


organism_name: Faecalibacterium longum


organism_name: Bacteroides xylanisolvens


organism_name: Phascolarctobacterium faecium


organism_name: Acutalibacteraceae bacterium


organism_name: Bacteroides fragilis


organism_name: Megasphaera sp.


organism_name: Bacteroides uniformis


organism_name: Phocaeicola vulgatus


organism_name: Megamonas funiformis


organism_name: Coprobacter fastidiosus


organism_name: Alistipes onderdonkii


organism_name: Prevotella sp.


organism_name: Flavonifractor plautii


organism_name: Parabacteroides distasonis


organism_name: Ruthenibacterium lactatiformans


organism_name: Phocaeicola plebeius


organism_name: Akkermansia muciniphila


organism_name: Escherichia coli


organism_name: Oscillibacter sp.