organism_name: Listeria monocytogenes


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI

asm_submitter: Memorial Sloan Kettering Cancer Center HCT Microbiota

assembly_level: Contig

assembly_type: haploid

excluded_from_refseq: derived from metagenome

genome_rep: Full

group: bacteria

organism_name: Akkermansia massiliensis

release_type: Major

version_status: latest


asm_submitter: FDA

excluded_from_refseq: from large multi-isolate project

organism_name: Escherichia coli


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Clostridium sp.


organism_name: Bacteroides uniformis


organism_name: Bacteroides xylanisolvens


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


organism_name: Butyricimonas faecihominis

paired_asm_comp: identical


organism_name: Phocaeicola vulgatus


asm_submitter: National Center for Biotechnology Information


organism_name: Lawsonibacter faecis


isolate: unkown

organism_name: Streptococcus pyogenes


organism_name: Parabacteroides distasonis


organism_name: Massilioclostridium sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Alistipes shahii


organism_name: Lactiplantibacillus plantarum


organism_name: Wansuia hejianensis


organism_name: [Clostridium] innocuum


organism_name: Megasphaera sp.


organism_name: Phascolarctobacterium faecium


organism_name: Candidatus Enterenecus sp.


organism_name: Phocaeicola dorei


organism_name: Flavonifractor plautii


organism_name: Pediococcus acidilactici


asm_submitter: CDC

organism_name: Escherichia coli


asm_submitter: FDA-CVM

organism_name: Aeromonas salmonicida


organism_name: Lactobacillus paragasseri


organism_name: Bacteroides ovatus


organism_name: Alistipes onderdonkii


organism_name: Bacteroides uniformis


organism_name: Streptococcus pyogenes


organism_name: Parabacteroides distasonis


organism_name: Streptococcus parasanguinis


organism_name: Isoptericola variabilis


organism_name: Granulicatella adiacens


organism_name: Streptococcus thermophilus


organism_name: Rothia mucilaginosa


organism_name: Abiotrophia defectiva


organism_name: Staphylococcus epidermidis


organism_name: Blautia argi


organism_name: Mediterraneibacter gnavus


organism_name: Escherichia coli


organism_name: Eggerthella lenta


organism_name: Extibacter muris


organism_name: Blautia caecimuris


organism_name: Blautia celeris


organism_name: Akkermansia sp.


organism_name: Rothia sp. (in: high G+C Gram-positive bacteria)


organism_name: Enterococcus durans


organism_name: Phocaeicola vulgatus


organism_name: Candidatus Scatavimonas sp.


organism_name: Enterococcus faecalis


organism_name: Pauljensenia sp.


organism_name: Blautia sp.


organism_name: Blautia fusiformis


organism_name: Paratractidigestivibacter faecalis


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Faecalibacterium duncaniae


organism_name: Streptococcus thermophilus


organism_name: Akkermansia massiliensis


organism_name: Escherichia coli


organism_name: Phascolarctobacterium faecium


organism_name: Blautia intestinihominis


organism_name: Agathobacter rectalis


organism_name: Slackia isoflavoniconvertens


organism_name: Anaerotardibacter sp.


organism_name: Hominenteromicrobium mulieris


organism_name: Bifidobacterium longum


organism_name: Blautia obeum


organism_name: Senegalimassilia anaerobia


organism_name: Allobaileyella intestinalis


organism_name: Pauljensenia sp.


organism_name: Blautia caecimuris


organism_name: Thomasclavelia ramosa


organism_name: Faecalimonas umbilicata


organism_name: Longicatena caecimuris


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Lachnospirales bacterium


organism_name: Escherichia coli


organism_name: Faecalimonas nexilis


organism_name: Roseburia faecis


organism_name: Rothia mucilaginosa


organism_name: Streptococcus salivarius


organism_name: Streptococcus sp.


organism_name: Mediterraneibacter gnavus


organism_name: Flavonifractor plautii


organism_name: Roseburia intestinalis


organism_name: Clostridium fessum


organism_name: Pilosibacter sp.


organism_name: Phocaeicola dorei


organism_name: Enterocloster sp.


organism_name: Terrisporobacter othiniensis


organism_name: Enterococcus faecalis


organism_name: Staphylococcus haemolyticus


organism_name: Ruthenibacterium lactatiformans


organism_name: Escherichia coli


organism_name: Lachnospiraceae bacterium


organism_name: Klebsiella pneumoniae


organism_name: Terrisporobacter sp.


organism_name: Clostridium sp.


organism_name: Streptococcus thermophilus


organism_name: Weissella confusa


organism_name: Blautia caecimuris


organism_name: Blautia hansenii


organism_name: Blautia sp.


organism_name: Eggerthella lenta


organism_name: Faecalimonas sp.


organism_name: Streptococcus sp.


organism_name: Faecalimonas umbilicata


organism_name: Mediterraneibacter gnavus


organism_name: Blautia celeris


organism_name: Mediterraneibacter torques


organism_name: Escherichia coli


organism_name: Amedibacillus dolichus


organism_name: Oliverpabstia sp.


organism_name: Emergencia sp.


organism_name: Romboutsia timonensis


organism_name: Blautia hydrogenotrophica


organism_name: Anaerostipes hadrus


organism_name: Collinsella intestinalis


organism_name: Longicatena caecimuris


organism_name: Bacteroides stercoris


organism_name: Coprobacillus cateniformis


organism_name: Ruthenibacterium lactatiformans


organism_name: Candidatus Fimisoma sp.


organism_name: Eggerthella lenta


organism_name: Faecalimonas sp.


organism_name: Blautia sp.


organism_name: Blautia faecis


organism_name: Lentihominibacter sp.


organism_name: Escherichia coli


organism_name: Candidatus Fimivicinus sp.


organism_name: Blautia wexlerae


organism_name: Sellimonas intestinalis


organism_name: Phascolarctobacterium faecium


organism_name: Agathobacter rectalis


organism_name: Eubacterium maltosivorans


organism_name: Collinsella intestinalis


organism_name: Mediterraneibacter torques


organism_name: Coprobacillus cateniformis


organism_name: Ruthenibacterium lactatiformans


organism_name: Anaerostipes hadrus


organism_name: Legionella pneumophila


organism_name: Oliverpabstia sp.


organism_name: Campylobacter jejuni


organism_name: Eggerthella lenta


organism_name: Faecalimonas sp.


organism_name: Blautia sp.


organism_name: Streptococcus pyogenes


organism_name: Enterococcus faecium


organism_name: Enterococcus faecalis


organism_name: Phascolarctobacterium faecium


organism_name: Clostridium cuniculi


organism_name: Streptococcus gordonii


organism_name: Veillonella parvula


organism_name: Wansuia hejianensis


organism_name: Cuneatibacter caecimuris


organism_name: Streptococcus oralis


organism_name: Rothia mucilaginosa


organism_name: Granulicatella sp.


organism_name: Shuttleworthella satelles


organism_name: Thomasclavelia ramosa


organism_name: Isoptericola variabilis


organism_name: Scardovia wiggsiae


organism_name: Parabacteroides distasonis


organism_name: Streptococcus pyogenes


organism_name: Legionella pneumophila


organism_name: Bacteroides xylanisolvens


organism_name: Campylobacter upsaliensis


organism_name: Escherichia coli


organism_name: Blautia hydrogenotrophica


organism_name: Agathobacter rectalis


organism_name: Blautia celeris


organism_name: Eggerthella lenta


organism_name: Campylobacter jejuni


organism_name: [Clostridium] scindens


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


organism_name: Wansuia hejianensis


organism_name: Hungatella hathewayi


organism_name: Alistipes onderdonkii


organism_name: Streptococcus sp.


organism_name: Streptococcus parasanguinis


organism_name: Phocaeicola vulgatus


organism_name: Blautia producta


organism_name: Bacteroides uniformis


organism_name: Yersinia enterocolitica


organism_name: Shigella flexneri


organism_name: Alloscardovia omnicolens


organism_name: Lactobacillus paragasseri


organism_name: Extibacter muris


organism_name: Peptococcaceae bacterium


organism_name: Roseburia sp.


organism_name: Zhenpiania hominis


organism_name: Faecalibacillus intestinalis


organism_name: Mediterraneibacter gnavus


organism_name: Mediterraneibacter torques


organism_name: Collinsella sp.


organism_name: Slackia isoflavoniconvertens


organism_name: Fusicatenibacter saccharivorans


organism_name: Roseburia intestinalis


organism_name: Candidatus Evtepia excrementipullorum


organism_name: Anaerostipes hadrus


organism_name: [Clostridium] innocuum


organism_name: Streptococcus thermophilus


organism_name: Pediococcus acidilactici


organism_name: Escherichia coli


organism_name: Flavonifractor plautii


organism_name: Bilophila wadsworthia


organism_name: Bacteroides uniformis


organism_name: Catenibacillus sp.


organism_name: Alistipes onderdonkii


organism_name: Granulicatella sp.


organism_name: Pauljensenia sp.


organism_name: Streptococcus sp.


organism_name: Rothia sp. (in: high G+C Gram-positive bacteria)


organism_name: Enterocloster aldenensis


organism_name: Blautia caecimuris


organism_name: Faecalimonas nexilis


organism_name: Thomasclavelia ramosa


organism_name: Lancefieldella sp.


excluded_from_refseq: unverified source organism; derived from metagenome


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Mediterraneibacter torques


organism_name: Blautia sp.


organism_name: Lactococcus lactis


organism_name: Veillonella sp.


organism_name: Rothia mucilaginosa


organism_name: Lactobacillus gasseri


organism_name: Streptococcus parasanguinis


organism_name: Mediterraneibacter gnavus


organism_name: Parabacteroides merdae


organism_name: Acutalibacter sp.


organism_name: Bacteroides uniformis


organism_name: Phocaeicola vulgatus


organism_name: Flavonifractor plautii


organism_name: Ruthenibacterium lactatiformans


organism_name: Faecalibacterium prausnitzii


organism_name: Clostridium fessum


organism_name: Oscillospiraceae bacterium


organism_name: Bifidobacterium bifidum


organism_name: Agathobacter rectalis


organism_name: Candidatus Scybalenecus sp.


organism_name: Mediterraneibacter torques


organism_name: Faecalimonas sp.


organism_name: Escherichia coli


organism_name: Eubacterium sp.


organism_name: Bacteroides stercoris


organism_name: Parabacteroides distasonis


organism_name: Parabacteroides merdae


organism_name: Bacteroides caccae


organism_name: Phascolarctobacterium faecium


organism_name: Parabacteroides gordonii


organism_name: Collinsella aerofaciens


organism_name: Anaerostipes hadrus


organism_name: Sellimonas intestinalis


organism_name: Lactococcus lactis


organism_name: Dorea formicigenerans


organism_name: Bacteroides ovatus


organism_name: Faecalimonas umbilicata


organism_name: Eggerthella lenta


organism_name: Faecalimonas nexilis


organism_name: [Clostridium] innocuum


organism_name: Roseburia faecis


organism_name: Enterocloster clostridioformis


organism_name: Fusicatenibacter saccharivorans


organism_name: Mediterraneibacter faecis


organism_name: Dialister invisus


organism_name: Bifidobacterium bifidum


organism_name: Mediterraneibacter gnavus


organism_name: Citrobacter youngae


organism_name: Blautia celeris


organism_name: Roseburia inulinivorans


organism_name: Phocaeicola vulgatus


organism_name: Faecalibacterium taiwanense


organism_name: Blautia wexlerae


organism_name: Streptococcus salivarius


organism_name: Dorea formicigenerans


organism_name: Faecalimonas nexilis


organism_name: Pediococcus acidilactici


asm_submitter: Public Health England

organism_name: Yersinia enterocolitica


asm_submitter: Health Protection Agency

organism_name: Listeria monocytogenes


organism_name: Lancefieldella sp.


organism_name: Lacticaseibacillus rhamnosus


organism_name: Streptococcus gordonii


organism_name: Clostridium perfringens


organism_name: Limosilactobacillus fermentum


organism_name: Veillonella parvula


organism_name: Lactobacillus paragasseri


organism_name: Enterococcus faecalis


organism_name: Lactobacillus delbrueckii


organism_name: Staphylococcus epidermidis


organism_name: Lactococcus lactis


organism_name: Enterococcus lactis


organism_name: Escherichia coli


organism_name: Enterocloster aldenensis


organism_name: Blautia wexlerae


organism_name: Streptococcus raffinosi


organism_name: Blautia producta


organism_name: Klebsiella pneumoniae


organism_name: Bifidobacterium dentium


organism_name: Garciella sp.


organism_name: Klebsiella oxytoca


organism_name: Lacticaseibacillus rhamnosus


organism_name: Enterococcus innesii


organism_name: Clostridium perfringens


organism_name: Dialister invisus


organism_name: Clostridium botulinum A


organism_name: Enterobacter hormaechei


organism_name: Bacteroides fragilis


organism_name: Parabacteroides distasonis


organism_name: Enterocloster sp.


organism_name: Blautia celeris


organism_name: Blautia argi


organism_name: Mediterraneibacter torques


organism_name: [Clostridium] scindens


organism_name: Mediterraneibacter glycyrrhizinilyticus


organism_name: Mediterraneibacter gnavus


organism_name: Longicatena caecimuris


organism_name: Pauljensenia sp.


organism_name: Acutalibacter sp.


organism_name: Sellimonas intestinalis


organism_name: Eggerthella lenta


organism_name: Akkermansia muciniphila


organism_name: Blautia producta


organism_name: Blautia hydrogenotrophica


organism_name: Enorma massiliensis


organism_name: Acidaminococcus intestini


organism_name: Streptococcus salivarius


organism_name: Thomasclavelia ramosa


organism_name: Enterocloster bolteae


organism_name: Mediterraneibacter torques


organism_name: Ruthenibacterium lactatiformans


asm_submitter: Center for Food Safety and Applied Nutrition

organism_name: Salmonella enterica


organism_name: Parasutterella excrementihominis


organism_name: Candidatus Merdisoma faecalis


organism_name: [Clostridium] innocuum


organism_name: Bacteroides thetaiotaomicron


organism_name: Bacteroides uniformis


organism_name: Alistipes putredinis


organism_name: Sellimonas intestinalis


organism_name: Bifidobacterium longum


organism_name: Enterococcus faecalis


organism_name: Streptococcus vestibularis


organism_name: Lacticaseibacillus rhamnosus


organism_name: Lactobacillus paragasseri


organism_name: Clostridium perfringens


organism_name: Klebsiella variicola


organism_name: Veillonella atypica


organism_name: Streptococcus parasanguinis


organism_name: Rothia mucilaginosa


organism_name: Staphylococcus epidermidis


organism_name: Blautia hansenii


organism_name: Thomasclavelia ramosa


organism_name: Blautia wexlerae


organism_name: Veillonella sp.


organism_name: Anaerosinus gibii


organism_name: Eggerthella lenta


organism_name: Candidatus Scatavimonas sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: [Clostridium] innocuum


organism_name: Mediterraneibacter gnavus


organism_name: Streptococcus sp.


organism_name: Klebsiella pneumoniae


organism_name: Leuconostoc mesenteroides


organism_name: Lactococcus lactis


organism_name: Haemophilus parainfluenzae


organism_name: [Clostridium] methylpentosum


organism_name: Hungatella hathewayi


organism_name: Enterocloster bolteae


organism_name: Oribacterium sinus


organism_name: Thomasclavelia ramosa


organism_name: Megasphaera massiliensis


organism_name: Actinomyces oris


organism_name: Wansuia hejianensis


organism_name: Lactobacillus kalixensis


organism_name: Alloscardovia omnicolens


organism_name: Blautia producta


organism_name: Cuneatibacter caecimuris


organism_name: Ruthenibacterium lactatiformans


organism_name: Catenibacillus sp.


organism_name: Bacteroides ovatus


organism_name: Alistipes putredinis


organism_name: Parabacteroides merdae


organism_name: Flavonifractor plautii


organism_name: Escherichia coli


organism_name: Alistipes indistinctus


organism_name: Akkermansia muciniphila


organism_name: Parasutterella excrementihominis


organism_name: Bacteroides uniformis


organism_name: Dialister invisus


organism_name: Megasphaera massiliensis


organism_name: Limosilactobacillus sp.


organism_name: Wansuia hejianensis


organism_name: Streptococcus sp.


organism_name: Lactobacillus kalixensis


organism_name: Blautia producta


organism_name: Catenibacillus sp.


organism_name: Thomasclavelia ramosa


organism_name: Sellimonas intestinalis


organism_name: [Clostridium] hylemonae


organism_name: Bifidobacterium longum


organism_name: Mediterraneibacter glycyrrhizinilyticus


organism_name: Enorma massiliensis


organism_name: Phocaeicola vulgatus


organism_name: Evtepia gabavorous


organism_name: Blautia sp.


organism_name: Parabacteroides distasonis


organism_name: Akkermansia muciniphila


organism_name: Eisenbergiella porci


organism_name: Dorea ammoniilytica


organism_name: Alloscardovia omnicolens


organism_name: Dialister invisus


organism_name: Candidatus Fimivicinus sp.


organism_name: Longicatena caecimuris


organism_name: [Clostridium] leptum


organism_name: Bifidobacterium bifidum


organism_name: Neglectibacter timonensis


organism_name: Hominenteromicrobium sp.


organism_name: Phascolarctobacterium faecium


organism_name: Clostridium sp.


organism_name: Parabacteroides goldsteinii


organism_name: Phocaeicola plebeius


organism_name: Bacteroides salyersiae


organism_name: Odoribacter laneus


organism_name: Candidatus Aphodousia faecalis


organism_name: Raoultibacter timonensis


organism_name: Christensenella minuta


organism_name: Bilophila wadsworthia


organism_name: Parabacteroides distasonis


organism_name: Escherichia coli


organism_name: Butyricimonas paravirosa


organism_name: Christensenella hongkongensis


organism_name: Enterococcus faecalis


organism_name: Rothia mucilaginosa


organism_name: Lancefieldella sp.


organism_name: Isoptericola variabilis


organism_name: Streptococcus sp.


organism_name: Lacticaseibacillus rhamnosus


organism_name: Leuconostoc lactis


organism_name: Veillonella parvula


organism_name: Enterococcus raffinosus


organism_name: Ruminococcoides intestinale


organism_name: Mediterraneibacter gnavus


organism_name: Negativibacillus massiliensis


organism_name: Enterocloster clostridioformis


organism_name: Agathobacter rectalis


organism_name: Flavonifractor plautii


organism_name: Blautia celeris


organism_name: Dorea phocaeensis


organism_name: Blautia sp.


organism_name: Sellimonas intestinalis


organism_name: Blautia producta


organism_name: Eubacterium ramulus


organism_name: Catenibacillus sp.


organism_name: Streptococcus thermophilus


organism_name: Blautia fusiformis


organism_name: Blautia caecimuris


organism_name: Mediterraneibacter glycyrrhizinilyticus


organism_name: Enterocloster sp.


organism_name: Enterocloster aldenensis


organism_name: Mediterraneibacter gnavus


organism_name: Thomasclavelia ramosa


organism_name: Mediterraneibacter faecis


organism_name: Clostridium pacaense


organism_name: Claveliimonas bilis


organism_name: Agathobacter rectalis


organism_name: Phascolarctobacterium faecium


organism_name: Flavonifractor plautii


organism_name: Evtepia gabavorous


organism_name: Lacticaseibacillus rhamnosus


organism_name: Enterococcus faecalis


organism_name: Oscillospiraceae bacterium


organism_name: Ligilactobacillus salivarius


organism_name: Alistipes putredinis


organism_name: Candidatus Enterenecus sp.


organism_name: Anaeromassilibacillus sp.


organism_name: Alistipes onderdonkii


organism_name: Phocaeicola dorei


organism_name: Acutalibacteraceae bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: Longibaculum muris


organism_name: Eubacterium ramulus


organism_name: Enterocloster sp.


organism_name: Oliverpabstia intestinalis


organism_name: Phocaeicola vulgatus


organism_name: Akkermansia massiliensis


organism_name: Veillonella parvula


organism_name: Enterobacter hormaechei


organism_name: Streptococcus thermophilus


organism_name: Streptococcus sp.


organism_name: Flavonifractor plautii


organism_name: Bacteroides ovatus


organism_name: [Clostridium] leptum


organism_name: Sellimonas catena


organism_name: Massilioclostridium sp.


organism_name: Lacticaseibacillus paracasei


organism_name: Indolivaga capnocytophagoides


asm_submitter: University of Maribor, Faculty of Natural Sciences and Mathematics

assembly_level: Complete Genome

organism_name: Komagataeibacter piraceti

paired_asm_comp: different


organism_name: Klebsiella pneumoniae


excluded_from_refseq: contaminated

organism_name: Novacetimonas labruscae


organism_name: Eggerthella lenta


organism_name: [Clostridium] innocuum


organism_name: Enterococcus gilvus


organism_name: Lactobacillus paragasseri


organism_name: Blautia celeris


organism_name: Enterococcus faecalis


organism_name: Akkermansia massiliensis


organism_name: Ruthenibacterium lactatiformans


organism_name: Streptococcus mitis


organism_name: Phascolarctobacterium faecium


organism_name: Phocaeicola dorei


organism_name: Bacteroides uniformis


organism_name: Bacteroides ovatus


organism_name: Parabacteroides distasonis


organism_name: Blautia sp.


organism_name: Akkermansia sp.


organism_name: Blautia caecimuris


organism_name: Subdoligranulum variabile


organism_name: Thomasclavelia ramosa


organism_name: Sellimonas intestinalis


organism_name: Lactococcus lactis


organism_name: Citrobacter youngae


organism_name: Phocaeicola vulgatus


organism_name: Blautia celeris


organism_name: [Clostridium] innocuum


organism_name: Enterocloster bolteae


organism_name: Rothia sp. (in: high G+C Gram-positive bacteria)


organism_name: Mediterraneibacter torques


organism_name: Eggerthella lenta


organism_name: Blautia hydrogenotrophica


organism_name: Massilioclostridium sp.


organism_name: Akkermansia biwaensis


organism_name: Ruthenibacterium lactatiformans


organism_name: Trueperella pyogenes


organism_name: Enterococcus lactis


organism_name: Mediterraneibacter gnavus


organism_name: Blautia caecimuris


organism_name: Enterocloster asparagiformis


organism_name: Agathobaculum ammoniilyticum


organism_name: Granulicatella sp.


organism_name: Klebsiella pneumoniae


organism_name: Pauljensenia sp.


organism_name: Enterocloster bolteae


organism_name: Phocaeicola vulgatus


organism_name: Streptococcus thermophilus


organism_name: [Clostridium] innocuum


organism_name: Veillonella parvula


organism_name: Eggerthella lenta


organism_name: Blautia celeris


organism_name: Thomasclavelia ramosa


organism_name: Clostridium sp.


organism_name: Veillonella sp.


organism_name: Lactiplantibacillus plantarum


organism_name: Lacticaseibacillus paracasei


organism_name: Veillonella atypica


organism_name: Lacticaseibacillus rhamnosus


organism_name: Candidatus Egerieimonas sp.


asm_submitter: FDA Center for Food Safety and Applied Nutrition

organism_name: Listeria monocytogenes


organism_name: Vibrio parahaemolyticus


organism_name: Sellimonas intestinalis


organism_name: Enterococcus faecalis


organism_name: Flavonifractor plautii


organism_name: [Clostridium] innocuum


organism_name: Lactococcus lactis


organism_name: Stenotrophomonas maltophilia


organism_name: Streptococcus thermophilus


organism_name: Enterocloster clostridioformis


organism_name: Hungatella hathewayi


isolate: Post-mortem lung specimens

organism_name: Escherichia coli


organism_name: Lancefieldella sp.


organism_name: Streptococcus parasanguinis


organism_name: Veillonella nakazawae


organism_name: Enterobacter roggenkampii


organism_name: Pediococcus pentosaceus


organism_name: Enterococcus gallinarum


organism_name: Enterococcus faecium


organism_name: Klebsiella variicola


organism_name: Acidaminococcus intestini


organism_name: Phocaeicola vulgatus


organism_name: Bacteroides cellulosilyticus


organism_name: Veillonella parvula


organism_name: Enterobacter hormaechei


organism_name: [Clostridium] innocuum


organism_name: Enterocloster aldenensis


organism_name: Clostridium sp.


organism_name: Phocaeicola dorei


organism_name: Akkermansia massiliensis


organism_name: Escherichia coli


organism_name: Enterocloster bolteae


organism_name: Ruthenibacterium lactatiformans


organism_name: Fannyhessea vaginae


organism_name: Blautia celeris


organism_name: Lachnospiraceae bacterium


organism_name: Lactobacillus ultunensis


organism_name: Enterocloster clostridioformis


organism_name: Extibacter sp.


organism_name: Adlercreutzia rubneri


organism_name: Thomasclavelia ramosa


organism_name: Collinsella tanakaei


organism_name: Mediterraneibacter torques


organism_name: Collinsella sp.


organism_name: Mediterraneibacter gnavus


organism_name: Roseburia hominis


organism_name: Eubacterium ramulus


organism_name: Faecalibacillus intestinalis


organism_name: Dorea formicigenerans


organism_name: Escherichia coli


organism_name: Ruthenibacterium lactatiformans


organism_name: Bacteroides caccae


organism_name: Dialister invisus


organism_name: Fusobacterium animalis


organism_name: Shuttleworthella satelles


organism_name: Bifidobacterium longum


organism_name: Streptococcus salivarius


organism_name: Streptococcus hominis


organism_name: Citrobacter freundii


organism_name: Veillonella parvula


organism_name: Klebsiella ornithinolytica


organism_name: Enterococcus lactis


organism_name: Lacticaseibacillus rhamnosus


organism_name: Veillonella atypica


organism_name: Weissella cibaria


organism_name: Limosilactobacillus fermentum


organism_name: Klebsiella pneumoniae


organism_name: Streptococcus thermophilus


organism_name: Mediterraneibacter torques


organism_name: Phocaeicola vulgatus


organism_name: Faecalimonas nexilis


organism_name: Mediterraneibacter faecis


organism_name: Agathobacter rectalis


organism_name: Parabacteroides distasonis


organism_name: Bacteroides uniformis


organism_name: Escherichia coli


organism_name: [Clostridium] innocuum


organism_name: Mediterraneibacter gnavus


organism_name: Thomasclavelia ramosa


organism_name: Bifidobacterium longum


organism_name: Intestinibacter bartlettii


organism_name: Akkermansia muciniphila


organism_name: Enterococcus avium


infraspecific_name: strain=Not identified


organism_name: Rothia mucilaginosa


organism_name: Veillonella parvula


organism_name: Propionibacterium freudenreichii


organism_name: Actinomyces sp.


organism_name: Prevotella histicola


organism_name: Lactococcus lactis


organism_name: Leptotrichia wadei


organism_name: Scardovia wiggsiae


organism_name: Lancefieldella sp.


organism_name: Streptococcus parasanguinis


organism_name: Alloscardovia omnicolens


organism_name: Prevotella melaninogenica


organism_name: Streptococcus sp.


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Vibrio cholerae


organism_name: Bifidobacterium longum


organism_name: Thomasclavelia ramosa


organism_name: Blautia pseudococcoides


organism_name: Clostridioides difficile


organism_name: Enterococcus lactis


organism_name: Klebsiella pneumoniae


organism_name: Blautia celeris


organism_name: Enterococcus gallinarum


organism_name: Faecalimonas nexilis


organism_name: Enterocloster clostridioformis


organism_name: Blautia caecimuris


organism_name: Escherichia coli


organism_name: [Clostridium] innocuum


organism_name: Mediterraneibacter gnavus


organism_name: Merdimonas faecis


organism_name: Enterocloster bolteae


organism_name: Fusicatenibacter sp.


organism_name: Blautia sp.


organism_name: Enterocloster lavalensis


organism_name: Streptococcus sp.


organism_name: Eggerthella lenta


organism_name: Clostridium sp.


organism_name: Candidatus Acutalibacter ornithocaccae


organism_name: Ruthenibacterium lactatiformans


organism_name: Hungatella effluvii


organism_name: Veillonella rogosae


organism_name: Prevotella veroralis


organism_name: Veillonella parvula


organism_name: Alloprevotella sp.


organism_name: Streptococcus sanguinis


organism_name: Prevotella jejuni


organism_name: Leptotrichia hongkongensis


organism_name: Escherichia coli


organism_name: Veillonella atypica


organism_name: Actinomyces sp.


organism_name: Nanosynbacter sp.


organism_name: Lachnospiraceae bacterium


organism_name: Lacticaseibacillus rhamnosus


organism_name: Alloscardovia omnicolens


organism_name: Trueperella pyogenes


organism_name: Enterococcus lactis


organism_name: Staphylococcus epidermidis


organism_name: Bacteroides faecis


organism_name: Enterocloster aldenensis


organism_name: Enterocloster clostridioformis


organism_name: Faecalimonas umbilicata


organism_name: Blautia celeris


organism_name: Flavonifractor plautii


organism_name: [Clostridium] innocuum


organism_name: Parabacteroides gordonii


organism_name: Candidatus Fimivicinus sp.


organism_name: Faecalicatena contorta


organism_name: Akkermansia muciniphila


organism_name: [Clostridium] scindens


organism_name: Merdimonas faecis


organism_name: Blautia caecimuris


organism_name: Candidatus Flavonifractor avistercoris


organism_name: Ruthenibacterium lactatiformans


organism_name: Candidatus Ruminococcus gallistercoris


organism_name: Candidatus Scatavimonas sp.


organism_name: Evtepia gabavorous


organism_name: Enterococcus faecalis


organism_name: Sellimonas intestinalis


organism_name: Enterocloster aldenensis


organism_name: Blautia hominis


organism_name: Enterococcus dispar


organism_name: Parasutterella excrementihominis


organism_name: Blautia wexlerae


organism_name: Fusicatenibacter saccharivorans


organism_name: Intestinibacter bartlettii


organism_name: Veillonella parvula


organism_name: Anaerostipes sp.


organism_name: Roseburia faecis


organism_name: Eubacterium sp.


organism_name: Hominilimicola fabiformis


organism_name: Faecalimonas sp.


organism_name: Fusobacterium ulcerans


organism_name: [Clostridium] innocuum


organism_name: Flavonifractor plautii


organism_name: Fusicatenibacter sp.


organism_name: Hungatella hathewayi


organism_name: Lachnospira sp.


organism_name: Paludihabitans sp.


organism_name: Agathobacter rectalis


organism_name: Amedibacillus dolichus


organism_name: Eggerthellaceae bacterium


organism_name: Candidatus Fimivicinus sp.


organism_name: Eggerthella lenta


organism_name: Hominenteromicrobium mulieris


organism_name: Adlercreutzia rubneri


organism_name: Frisingicoccus sp.


organism_name: Anaerobutyricum hallii


organism_name: Anaerostipes hadrus


organism_name: Parabacteroides distasonis


organism_name: Blautia hydrogenotrophica


organism_name: [Clostridium] leptum


organism_name: Blautia fusiformis


organism_name: Negativibacillus sp.


organism_name: Bacteroides uniformis


organism_name: Allofournierella sp.


organism_name: Lactiplantibacillus plantarum


organism_name: Flavonifractor plautii


organism_name: Phascolarctobacterium faecium


organism_name: Pediococcus pentosaceus


organism_name: Alistipes putredinis


organism_name: Alistipes indistinctus


organism_name: Lawsonibacter faecis


organism_name: Cloacibacillus evryensis


organism_name: Diplocloster agilis


organism_name: Alistipes onderdonkii


organism_name: Escherichia coli


organism_name: Proteus mirabilis


organism_name: Akkermansia massiliensis


organism_name: [Clostridium] innocuum


isolate: Human-urine


organism_name: Bacteroides ovatus


organism_name: Alistipes shahii


organism_name: Agathobacter rectalis


organism_name: Vibrio parahaemolyticus


organism_name: Hominenteromicrobium mulieris


organism_name: Negativibacillus sp.


organism_name: Aeromonas salmonicida


organism_name: Intestinibacter bartlettii


organism_name: Acinetobacter baumannii


organism_name: Fusicatenibacter saccharivorans


organism_name: Evtepia gabavorous


organism_name: Collinsella aerofaciens


organism_name: Adlercreutzia rubneri


organism_name: Escherichia coli


organism_name: Eubacterium ramulus


organism_name: Blautia fusiformis


organism_name: Anaerostipes amylophilus


organism_name: Gemmiger formicilis


organism_name: Candidatus Fimivicinus sp.


organism_name: Akkermansia sp.


organism_name: Rothia mucilaginosa


organism_name: Streptococcus parasanguinis


organism_name: Anaerobutyricum soehngenii


organism_name: Faecalimonas umbilicata


organism_name: Candidatus Scybalosoma faecavium


organism_name: Klebsiella aerogenes


organism_name: Blautia celeris


organism_name: Blautia obeum


organism_name: Clostridium sp.


organism_name: Mediterraneibacter torques


organism_name: Enterocloster bolteae


organism_name: Escherichia coli


organism_name: Thomasclavelia ramosa


organism_name: Eubacterium ramulus


organism_name: Bacteroides fragilis


organism_name: Blautia fusiformis


organism_name: Anaerostipes caccae


organism_name: Campylobacter jejuni


organism_name: Acinetobacter baumannii


organism_name: Klebsiella pneumoniae


organism_name: Faecalimonas umbilicata


organism_name: Pseudomonas putida


organism_name: Bilophila wadsworthia


organism_name: Candidatus Scybalosoma faecavium


organism_name: Pseudomonas aeruginosa


organism_name: Candidatus Scatavimonas sp.


organism_name: Negativibacillus sp.


organism_name: Blautia caecimuris


organism_name: Escherichia coli


organism_name: Mediterraneibacter torques


organism_name: Candidatus Fimivicinus sp.


organism_name: Brotaphodocola sp.


organism_name: Anaerobutyricum soehngenii


organism_name: Blautia celeris


organism_name: Hominenteromicrobium mulieris


organism_name: Blautia fusiformis


organism_name: Blautia obeum


organism_name: Evtepia gabavorous


organism_name: Vescimonas coprocola


organism_name: [Eubacterium] siraeum


organism_name: Candidatus Scybalosoma faecavium


organism_name: Faecousia intestinalis


organism_name: Dorea amylophila


organism_name: Thomasclavelia ramosa


organism_name: Pseudomonas aeruginosa


organism_name: Bifidobacterium dentium


organism_name: Ligilactobacillus animalis


organism_name: Escherichia coli


organism_name: Proteus mirabilis


organism_name: Clostridium perfringens


organism_name: Senegalimassilia anaerobia


organism_name: Lacticaseibacillus paracasei


organism_name: Bifidobacterium breve


organism_name: Aeromonas salmonicida


organism_name: Lacticaseibacillus rhamnosus


organism_name: Acinetobacter baumannii


infraspecific_name: strain=JD-J-c


organism_name: [Clostridium] innocuum


organism_name: Phascolarctobacterium faecium


organism_name: Clostridium sp.


organism_name: Bacteroides ovatus


organism_name: Bacteroides uniformis


organism_name: Akkermansia biwaensis


organism_name: Phocaeicola dorei


organism_name: Butyricimonas paravirosa


organism_name: Bacteroides thetaiotaomicron


organism_name: Flavonifractor plautii


organism_name: Phocaeicola vulgatus


organism_name: Proteus mirabilis


organism_name: Mediterraneibacter gnavus


organism_name: Bifidobacterium longum


organism_name: Blautia celeris


organism_name: Akkermansia muciniphila


organism_name: Campylobacter jejuni


organism_name: Escherichia coli


organism_name: Acinetobacter baumannii


organism_name: Lactiplantibacillus plantarum


organism_name: Campylobacter coli


organism_name: Phascolarctobacterium faecium


organism_name: Bacteroides uniformis


organism_name: Klebsiella pneumoniae


infraspecific_name: strain=GL-S-b


infraspecific_name: strain=GL-S-c-e


infraspecific_name: strain=HJ-B-a


infraspecific_name: strain=HJ-B-c


infraspecific_name: strain=HJ-D-b


organism_name: Collinsella sp.


infraspecific_name: strain=HJ-D-c-e


infraspecific_name: strain=HJ-D-e


infraspecific_name: strain=GL-B-c


organism_name: Blautia fusiformis


infraspecific_name: strain=HJ-M-c


organism_name: Streptococcus thermophilus


infraspecific_name: strain=HJ-M-d


organism_name: Flavonifractor plautii


infraspecific_name: strain=HJ-M-e

organism_name: Proteus mirabilis


organism_name: Enterococcus faecalis


organism_name: Candidatus Fimivicinus sp.


infraspecific_name: strain=HJ-S-c


infraspecific_name: strain=HJ-S-d

organism_name: Morganella morganii


organism_name: Enterocloster bolteae


organism_name: Lactococcus lactis


infraspecific_name: strain=JD-C-a

organism_name: Escherichia coli


infraspecific_name: strain=JD-C-c-e


infraspecific_name: strain=JD-D-c-e


organism_name: Candidatus Borkfalkia ceftriaxoniphila


organism_name: Pseudomonas aeruginosa


infraspecific_name: strain=JD-J-b

organism_name: Stenotrophomonas maltophilia


organism_name: Lacticaseibacillus rhamnosus


infraspecific_name: strain=JD-X-b


infraspecific_name: strain=JD-X-c


organism_name: Parabacteroides merdae


organism_name: Parabacteroides distasonis


infraspecific_name: strain=GL-F-a


infraspecific_name: strain=GL-F-c


organism_name: Campylobacter jejuni


organism_name: Streptococcus raffinosi


organism_name: Enterococcus innesii


organism_name: Blautia celeris


organism_name: Streptococcus parasanguinis


organism_name: Staphylococcus epidermidis


organism_name: Rothia mucilaginosa


organism_name: Haemophilus influenzae


organism_name: Weissella confusa


organism_name: Rothia sp. (in: high G+C Gram-positive bacteria)


organism_name: Candidatus Faecousia gallistercoris


organism_name: Legionella pneumophila


organism_name: Fusicatenibacter sp.


organism_name: Eggerthella lenta


organism_name: [Clostridium] innocuum


organism_name: Ruthenibacterium lactatiformans


organism_name: Varibaculum cambriense


organism_name: Blautia sp.


organism_name: Intestinibacter bartlettii


organism_name: Lacticaseibacillus rhamnosus


organism_name: Shigella flexneri


organism_name: Escherichia coli


organism_name: Citrobacter freundii


organism_name: Veillonella sp.


organism_name: Enterobacter roggenkampii


organism_name: Pseudomonas putida


organism_name: Phocaeicola dorei


organism_name: Blautia producta


organism_name: Pseudomonas aeruginosa


organism_name: Pauljensenia sp.


organism_name: Bacteroides intestinalis


organism_name: Akkermansia muciniphila


organism_name: Flavonifractor plautii


organism_name: Bifidobacterium dentium


organism_name: Blautia celeris


organism_name: Candidatus Aphodousia sp.


organism_name: Veillonella nakazawae


organism_name: Streptococcus thermophilus


organism_name: Escherichia coli


organism_name: Bacteroides xylanisolvens


organism_name: Streptococcus vestibularis


organism_name: Enterocloster bolteae


organism_name: Listeria monocytogenes


organism_name: Enterocloster clostridioformis


organism_name: Salmonella enterica


organism_name: Acinetobacter baumannii


organism_name: Blautia sp.


organism_name: Streptococcus pasteurianus


organism_name: Legionella anisa


organism_name: Akkermansia muciniphila


organism_name: Eubacterium ramulus


organism_name: Dorea amylophila


organism_name: Agathobacter rectalis


organism_name: Anaerobutyricum soehngenii


organism_name: Gemmiger formicilis


organism_name: Escherichia coli


organism_name: Mediterraneibacter torques


organism_name: Thomasclavelia ramosa


organism_name: Staphylococcus epidermidis


organism_name: Enorma massiliensis


organism_name: [Clostridium] innocuum


organism_name: Corynebacterium striatum


organism_name: Faecalimonas sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Wansuia hejianensis


organism_name: Catenibacillus sp.


organism_name: Pseudomonas aeruginosa


organism_name: Actinomyces graevenitzii


organism_name: Veillonella parvula


organism_name: Bacteroides thetaiotaomicron


organism_name: Proteus mirabilis


organism_name: Phascolarctobacterium faecium


organism_name: Escherichia coli


organism_name: Bifidobacterium longum


organism_name: Thomasclavelia ramosa


organism_name: Streptococcus salivarius


organism_name: Blautia hydrogenotrophica


organism_name: Eubacterium ramulus


organism_name: Dorea phocaeensis


organism_name: Vibrio parahaemolyticus


organism_name: Clostridium sp.


organism_name: Vibrio alginolyticus


organism_name: Enorma massiliensis


organism_name: Vibrio fluvialis


organism_name: Blautia caecimuris


organism_name: Fusicatenibacter saccharivorans


organism_name: [Clostridium] innocuum


organism_name: Proteus mirabilis


organism_name: Faecalimonas sp.


organism_name: Evtepia gabavorous


organism_name: Enterocloster clostridioformis


organism_name: Vibrio vulnificus


organism_name: Alistipes putredinis


organism_name: [Clostridium] scindens


organism_name: Akkermansia massiliensis


organism_name: Ruthenibacterium lactatiformans


organism_name: Vibrio parahaemolyticus


organism_name: Bacteroides fragilis


organism_name: Escherichia coli


organism_name: Flintibacter sp.


organism_name: Vibrio fluvialis


organism_name: Roseburia faecis


organism_name: Megasphaera lornae


organism_name: Agathobacter rectalis


organism_name: Gardnerella vaginalis


organism_name: Extibacter muris


organism_name: Klebsiella pneumoniae


organism_name: Klebsiella variicola


organism_name: Bifidobacterium animalis


organism_name: Sneathia sanguinegens


organism_name: Citrobacter koseri


organism_name: Fannyhessea vaginae


organism_name: Shigella sonnei


organism_name: Pseudomonas aeruginosa


organism_name: Streptococcus sp.


organism_name: Streptococcus thermophilus


organism_name: Shigella flexneri


organism_name: Klebsiella ornithinolytica


organism_name: Proteus mirabilis


organism_name: Actinomyces graevenitzii


organism_name: Pauljensenia sp.


organism_name: Gardnerella vaginalis


organism_name: Faecalibacterium taiwanense


organism_name: Candidatus Fimivicinus sp.


organism_name: Acinetobacter baumannii


organism_name: Agathobacter rectalis


organism_name: Sellimonas intestinalis


organism_name: Negativibacillus sp.


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Faecalitalea cylindroides


organism_name: Candidatus Gemmiger faecavium


organism_name: Enterococcus faecalis


organism_name: Streptococcus salivarius


organism_name: Enorma massiliensis


organism_name: Murimonas intestini


organism_name: Blautia hydrogenotrophica


organism_name: Ruthenibacterium sp.


organism_name: Roseburia inulinivorans


organism_name: Vibrio cholerae


organism_name: Escherichia coli


organism_name: Campylobacter coli


organism_name: Emergencia timonensis


organism_name: Coprococcus intestinihominis


organism_name: Fusobacterium animalis


organism_name: Eggerthella lenta


organism_name: Prevotella histicola


organism_name: Collinsella sp.


organism_name: Vibrio vulnificus


organism_name: Klebsiella aerogenes


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Candidatus Fimisoma avicola


organism_name: Candidatus Scatavimonas sp.


organism_name: Schaalia dentiphila


organism_name: Actinomyces gerencseriae


organism_name: Limosilactobacillus fermentum


organism_name: Phocaeicola dorei


organism_name: Hominenteromicrobium mulieris


organism_name: Ruthenibacterium lactatiformans


organism_name: [Clostridium] leptum


organism_name: Enterocloster sp.


organism_name: Agathobacter rectalis


organism_name: Phascolarctobacterium faecium


organism_name: Eggerthella lenta


organism_name: Candidatus Scatomorpha sp.


organism_name: [Clostridium] scindens


organism_name: Sellimonas intestinalis


organism_name: Mediterraneibacter gnavus


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Blautia producta


organism_name: Eubacterium callanderi


organism_name: Anaerostipes caccae


organism_name: Anaeromassilibacillus sp.


organism_name: Enterocloster clostridioformis


organism_name: Longicatena caecimuris


organism_name: Candidatus Fimivicinus sp.


organism_name: Bifidobacterium longum


organism_name: Ruthenibacterium lactatiformans


organism_name: [Clostridium] innocuum


organism_name: Lancefieldella sp.


organism_name: Akkermansia muciniphila


organism_name: Enterococcus faecalis


organism_name: Parabacteroides distasonis


organism_name: Phocaeicola vulgatus


organism_name: Alistipes onderdonkii


organism_name: Salmonella enterica subsp. enterica serovar Kiambu


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Enterobacter hormaechei


organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


organism_name: Blautia producta


organism_name: Hungatella effluvii


organism_name: Vibrio parahaemolyticus


organism_name: Enterocloster clostridioformis


organism_name: Pseudomonas aeruginosa


organism_name: Longibaculum muris


organism_name: Klebsiella pneumoniae


organism_name: Anaerostipes hadrus


organism_name: Akkermansia muciniphila


organism_name: Escherichia coli


organism_name: Klebsiella variicola


organism_name: Thomasclavelia ramosa


organism_name: Pediococcus acidilactici


organism_name: Veillonella parvula


organism_name: Flavonifractor plautii


organism_name: Lachnospiraceae bacterium


organism_name: Emergencia sp.


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Holdemania massiliensis


organism_name: Akkermansia massiliensis


organism_name: Phascolarctobacterium faecium


organism_name: Diplocloster sp.


organism_name: Terrisporobacter othiniensis


organism_name: Rothia mucilaginosa


organism_name: Wansuia hejianensis


organism_name: Lactococcus lactis


organism_name: Blautia producta


organism_name: Blautia hominis


organism_name: Parabacteroides distasonis


organism_name: Coprobacillus cateniformis


organism_name: Longicatena caecimuris


organism_name: Cuneatibacter caecimuris


organism_name: Staphylococcus epidermidis


organism_name: Enterococcus faecalis


organism_name: Lacticaseibacillus rhamnosus


organism_name: Klebsiella variicola


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Thomasclavelia ramosa


organism_name: Candidatus Fimenecus sp.


organism_name: Dorea longicatena


organism_name: Hominilimicola fabiformis


organism_name: Escherichia coli


organism_name: Anaerostipes hadrus


organism_name: Streptococcus thermophilus


organism_name: Clostridioides difficile


organism_name: Sellimonas intestinalis


organism_name: Alistipes onderdonkii


organism_name: Butyricicoccus sp.


organism_name: Alistipes indistinctus


organism_name: Akkermansia massiliensis


organism_name: Lawsonibacter faecis


organism_name: Streptococcus sp.


organism_name: Veillonella sp.


organism_name: Lactobacillus delbrueckii


organism_name: Shigella sonnei


organism_name: Limosilactobacillus pontis


organism_name: Longibaculum muris


organism_name: Longicatena caecimuris


organism_name: Pseudomonas aeruginosa


organism_name: Klebsiella pneumoniae


organism_name: Eggerthella lenta


organism_name: Candidatus Fimivicinus sp.


organism_name: Blautia faecis


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Parabacteroides distasonis


organism_name: Intestinibacter bartlettii


organism_name: Enterocloster bolteae


organism_name: Pediococcus acidilactici


organism_name: Ruthenibacterium lactatiformans


organism_name: Flintibacter sp.


organism_name: Mediterraneibacter torques


organism_name: Lachnospiraceae bacterium


organism_name: Desulfovibrio fairfieldensis


organism_name: Blautia celeris


organism_name: Eisenbergiella tayi


organism_name: Enorma sp.


organism_name: Blautia wexlerae


organism_name: Escherichia coli


organism_name: Akkermansia muciniphila


organism_name: Gemmiger sp.


organism_name: Ruminococcoides intestinale


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Gemmiger formicilis


organism_name: Thomasclavelia ramosa


organism_name: Staphylococcus epidermidis


organism_name: Rothia dentocariosa


organism_name: [Clostridium] innocuum


organism_name: Ruthenibacterium lactatiformans


organism_name: Akkermansia massiliensis


organism_name: Anaerostipes hadrus


organism_name: Agathobacter rectalis


organism_name: Collinsella sp.


organism_name: Brotocaccenecus cirricatena


organism_name: Eubacterium ventriosum


organism_name: Bacteroides uniformis


organism_name: Eubacterium sp.


organism_name: Lacticaseibacillus rhamnosus


organism_name: Citrobacter portucalensis


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Veillonella sp.


organism_name: Klebsiella pneumoniae


organism_name: Phocaeicola vulgatus


organism_name: Lacticaseibacillus paracasei


organism_name: Parabacteroides distasonis


organism_name: Mediterraneibacter gnavus


organism_name: Escherichia coli


organism_name: Bacteroides ovatus


organism_name: Enterobacter hormaechei


organism_name: Campylobacter jejuni


organism_name: Vibrio vulnificus


organism_name: Enterococcus faecalis


organism_name: Ruthenibacterium lactatiformans


organism_name: Shigella flexneri


organism_name: Clostridium cadaveris


organism_name: Lactobacillus gasseri


organism_name: Collinsella sp.


organism_name: Dorea phocaeensis


organism_name: Hominenteromicrobium mulieris


organism_name: Klebsiella pneumoniae


organism_name: Sellimonas intestinalis


organism_name: Parabacteroides merdae


organism_name: Phascolarctobacterium faecium


organism_name: Bacteroides uniformis


organism_name: Fusicatenibacter saccharivorans


organism_name: Faecalibacterium prausnitzii


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Mediterraneibacter gnavus


organism_name: Enterocloster clostridioformis


organism_name: Lactonifactor sp.


organism_name: Terrisporobacter othiniensis


organism_name: Parabacteroides chongii


organism_name: Clostridium sp.


organism_name: Streptococcus sanguinis


organism_name: Parabacteroides distasonis


organism_name: Escherichia coli


organism_name: Bacteroides fragilis


organism_name: Streptococcus mitis


organism_name: Candidatus Gemmiger stercoravium


organism_name: Phocaeicola vulgatus


organism_name: Blautia hansenii


organism_name: Ligilactobacillus salivarius


organism_name: Eggerthella lenta


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Enterococcus faecalis


organism_name: Pediococcus acidilactici


organism_name: Candidatus Limivivens merdigallinarum


organism_name: Enterocloster bolteae


organism_name: [Clostridium] innocuum


organism_name: Mediterraneibacter torques


organism_name: Blautia caecimuris


organism_name: Enterocloster sp.


organism_name: Faecalibacterium taiwanense


organism_name: Lachnospiraceae bacterium


organism_name: Bacteroides ovatus


organism_name: Parabacteroides distasonis


organism_name: Veillonella parvula


organism_name: Listeria monocytogenes


organism_name: Coprobacillus cateniformis


organism_name: Anaerotignum sp.


organism_name: Hungatella hathewayi


organism_name: Yersinia enterocolitica


organism_name: Escherichia coli


organism_name: Blautia celeris


organism_name: Phocaeicola massiliensis


organism_name: Akkermansia sp.


organism_name: Shigella sonnei


organism_name: Ligilactobacillus salivarius


organism_name: Klebsiella aerogenes


organism_name: Streptococcus sp.


organism_name: Veillonella atypica


organism_name: Enterococcus lactis


organism_name: Klebsiella variicola


organism_name: Veillonella parvula


organism_name: Clostridium cuniculi


organism_name: Klebsiella pneumoniae


organism_name: Enterococcus faecalis


organism_name: Collinsella aerofaciens


organism_name: Candidatus Scatavimonas sp.


organism_name: Anaerotruncus colihominis


organism_name: Phocaeicola vulgatus


organism_name: Faecalibacillus intestinalis


organism_name: Mediterraneibacter torques


organism_name: Thomasclavelia ramosa


organism_name: Mediterraneibacter gnavus


organism_name: Bacteroides fragilis


organism_name: Acutalibacteraceae bacterium


organism_name: Enterococcus casseliflavus


organism_name: Lacticaseibacillus paracasei


organism_name: Bacteroides ovatus


organism_name: Escherichia coli


organism_name: Parabacteroides distasonis


organism_name: Klebsiella pneumoniae


organism_name: Lancefieldella sp.


organism_name: Pauljensenia sp.


organism_name: [Clostridium] innocuum


organism_name: Akkermansia massiliensis


organism_name: Lacticaseibacillus rhamnosus


organism_name: Veillonella sp.


organism_name: Alistipes onderdonkii


organism_name: Candidatus Limivicinus sp.


organism_name: Mediterraneibacter torques


organism_name: Clostridia bacterium


organism_name: Anaerobutyricum sp.


organism_name: Candidatus Fimivicinus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Hominimerdicola aceti


organism_name: Sellimonas intestinalis


organism_name: Massiliimalia sp.


organism_name: Klebsiella pneumoniae


organism_name: Eggerthella lenta


organism_name: Phascolarctobacterium faecium


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Longibaculum muris


organism_name: Christensenellales bacterium


organism_name: Enorma massiliensis


organism_name: Blautia celeris


asm_submitter: Vet-LIRN-CVM-FDA

organism_name: Clostridioides difficile


organism_name: Peptacetobacter sp.


organism_name: Mediterraneibacter faecis


organism_name: Collinsella intestinalis


organism_name: Hominenteromicrobium mulieris


organism_name: Candidatus Fimivicinus sp.


organism_name: Eubacterium callanderi


organism_name: Candidatus Fimisoma sp.


organism_name: Sellimonas intestinalis


organism_name: Anaerotardibacter sp.


organism_name: Mediterraneibacter torques


organism_name: Lactococcus lactis


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Faecalibacterium taiwanense


organism_name: Evtepia gabavorous


organism_name: Blautia sp.


organism_name: Blautia hydrogenotrophica


organism_name: Thomasclavelia ramosa


organism_name: Escherichia coli


organism_name: [Clostridium] innocuum


organism_name: [Clostridium] hylemonae


organism_name: Streptococcus gordonii


organism_name: Lactobacillus paragasseri


organism_name: Amedibacillus dolichus


organism_name: Ruthenibacterium sp.


organism_name: Streptococcus anginosus


organism_name: Gemmiger sp.


organism_name: Streptococcus sp.


organism_name: Allofournierella sp.


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Candidatus Fimisoma sp.


organism_name: Catenibacillus sp.


organism_name: Faecalicatena contorta


organism_name: Paratractidigestivibacter faecalis


organism_name: Paraprevotella clara


organism_name: Roseburia faecis


organism_name: Clostridium perfringens


organism_name: Escherichia coli


organism_name: Lachnospira eligens


organism_name: [Eubacterium] siraeum


organism_name: Bacillus cereus


organism_name: Phocaeicola vulgatus


organism_name: Acutalibacteraceae bacterium


organism_name: Ruminococcus sp.


organism_name: Oscillospiraceae bacterium


organism_name: Alistipes shahii


organism_name: Hominicoprocola fusiformis


organism_name: Alistipes putredinis


organism_name: Bacteroides uniformis


organism_name: Ruminococcoides intestinale


organism_name: Streptococcus thermophilus


organism_name: Staphylococcus epidermidis


organism_name: Lactobacillus delbrueckii


organism_name: Enterococcus faecalis


organism_name: Dorea hominis


organism_name: Collinsella bouchesdurhonensis


asm_submitter: Research Institute for Systems Biology and Medicine (RISBM)

assembly_level: Scaffold

organism_name: Proteus mirabilis


asm_submitter: Instituto Oswaldo Cruz

organism_name: Pseudomonas aeruginosa


organism_name: Klebsiella michiganensis


organism_name: Providencia hangzhouensis


organism_name: Escherichia coli


asm_submitter: University of Crete


asm_submitter: The University of Burdwan

organism_name: Serratia nematodiphila


asm_submitter: Institute of Special Animal and Plant Sciences of Chinese Academy of Agricultural Sciences


asm_submitter: Memorial Sloan Kettering Cancer Center HCT Microbiota

organism_name: Wansuia hejianensis


organism_name: Candidatus Gemmiger faecavium


organism_name: Thomasclavelia ramosa


organism_name: Ruthenibacterium lactatiformans


organism_name: Streptococcus anginosus


organism_name: Cuneatibacter caecimuris


organism_name: Coprobacillus cateniformis


organism_name: Akkermansia muciniphila


organism_name: Streptococcus thermophilus


organism_name: [Clostridium] innocuum


organism_name: Eubacterium maltosivorans


organism_name: Mediterraneibacter gnavus


organism_name: Bacteroides fragilis


organism_name: Blautia caecimuris


organism_name: Sellimonas intestinalis


organism_name: Hominenteromicrobium mulieris


organism_name: Bifidobacterium longum


organism_name: Pauljensenia sp.


organism_name: Ruminococcoides intestinale


organism_name: Eubacterium sp.


organism_name: Streptococcus parasanguinis


organism_name: Eggerthella lenta


organism_name: Dorea sp.


organism_name: Blautia wexlerae


organism_name: Lachnospira sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Escherichia coli


organism_name: Akkermansia muciniphila


organism_name: Lacticaseibacillus rhamnosus


organism_name: Clostridioides difficile


organism_name: Ruthenibacterium lactatiformans


organism_name: Veillonella parvula


organism_name: Blautia hominis


organism_name: Phocaeicola dorei


organism_name: Thomasclavelia ramosa


organism_name: Lactobacillus acidophilus


organism_name: Bifidobacterium adolescentis


organism_name: Blautia producta


organism_name: Anaerostipes hadrus


organism_name: [Clostridium] innocuum


organism_name: Blautia wexlerae


organism_name: Sellimonas intestinalis


organism_name: Faecalibacterium longum


organism_name: [Clostridium] scindens


organism_name: Escherichia coli


organism_name: Blautia hansenii


organism_name: Indolivaga capnocytophagoides


organism_name: Veillonella sp.


organism_name: Streptococcus caecimuris


organism_name: Streptococcus thermophilus


organism_name: Pauljensenia sp.


organism_name: Blautia fusiformis


organism_name: Allocoprococcus comes


organism_name: Agathobacter rectalis


organism_name: Streptococcus salivarius


organism_name: Collinsella sp.


organism_name: Dorea longicatena


organism_name: Fusicatenibacter saccharivorans


organism_name: Mediterraneibacter torques


organism_name: Faecalibacterium sp.


organism_name: Faecalibacillus intestinalis


organism_name: Ligilactobacillus salivarius


organism_name: Blautia obeum


organism_name: Mediterraneibacter glycyrrhizinilyticus


organism_name: Phascolarctobacterium faecium


organism_name: Vermiculatibacterium sp.


organism_name: Enterococcus faecalis


organism_name: Enterococcus lactis


organism_name: Parabacteroides merdae


organism_name: Akkermansia muciniphila


organism_name: Flavonifractor plautii


organism_name: Thomasclavelia ramosa


organism_name: Rothia mucilaginosa


organism_name: Pauljensenia sp.


organism_name: Lactococcus lactis


organism_name: Prevotella histicola


organism_name: Sellimonas intestinalis


organism_name: Veillonella sp.


asm_submitter: Universidad Cientifica del Sur

organism_name: Escherichia coli


asm_submitter: Gazipur Agricultural University


organism_name: Staphylococcus arlettae


organism_name: Staphylococcus simulans


organism_name: Klebsiella pneumoniae


organism_name: Staphylococcus ureilyticus


excluded_from_refseq: fragmented assembly


asm_submitter: MTI Hayatabad Medical Complex/Khyber Girls Medical College

organism_name: Acinetobacter baumannii


asm_submitter: Nation Chung Hsing University

organism_name: Cupriavidus sp. CC-HEC039


asm_submitter: Utah Public Health Laboratory Infectious Disease submission group

organism_name: Pseudomonas aeruginosa


asm_submitter: University of Texas MD Anderson Cancer Center

isolate: Isolate B


isolate: Isolate A


isolate: Isolate C


asm_submitter: University of Veterinary Medicine Budapest


asm_submitter: Gansu Agricultural University

assembly_level: Chromosome

infraspecific_name: strain=JF

isolate: Potentilla-anserina pig feces

organism_name: Klebsiella variicola


asm_submitter: Inner Mongolia Agricultural University

organism_name: Bacillus velezensis


asm_submitter: Second Affliated Hospital of Kunming Medical University

isolate: Commercial Purchase

organism_name: Klebsiella pneumoniae subsp. pneumoniae


organism_name: Akkermansia muciniphila


organism_name: Limosilactobacillus fermentum


organism_name: [Clostridium] innocuum


organism_name: Megasphaera massiliensis


organism_name: Pediococcus acidilactici


organism_name: Klebsiella ornithinolytica


organism_name: Lacticaseibacillus rhamnosus


organism_name: Staphylococcus epidermidis


organism_name: Alistipes onderdonkii


organism_name: Faecalibacterium taiwanense


organism_name: Negativibacillus sp.


organism_name: Ruminococcus intestinalis


organism_name: Blautia sp.


organism_name: Blautia fusiformis


organism_name: Enterocloster clostridioformis


organism_name: Lachnospira eligens


organism_name: Prevotella sp.


organism_name: Bacteroides uniformis


organism_name: Dialister histaminiformans


organism_name: Phocaeicola vulgatus


organism_name: Bifidobacterium longum


organism_name: Bacteroides thetaiotaomicron


organism_name: Phascolarctobacterium faecium


organism_name: Akkermansia massiliensis


organism_name: Butyricicoccus sp.


organism_name: Alistipes finegoldii


organism_name: Parabacteroides distasonis


organism_name: Ligilactobacillus salivarius


organism_name: [Clostridium] innocuum


organism_name: Akkermansia muciniphila


organism_name: Lacticaseibacillus rhamnosus


organism_name: Candidatus Pseudolachnospira sp.


organism_name: [Eubacterium] siraeum


organism_name: Mediterraneibacter torques


organism_name: Hominimerdicola aceti


organism_name: Faecalimonas nexilis


organism_name: Christensenellales bacterium


organism_name: Hominenteromicrobium mulieris


organism_name: Ruminococcoides intestinale


organism_name: Vescimonas sp.


organism_name: Ruminococcus sp.


organism_name: Acutalibacteraceae bacterium


organism_name: Candidatus Fimivicinus sp.


organism_name: Bifidobacterium longum


organism_name: Enterocloster bolteae


organism_name: Hungatella sp.


organism_name: Bacteroides fragilis


organism_name: Fusicatenibacter saccharivorans


organism_name: Thomasclavelia ramosa


organism_name: Alistipes onderdonkii


organism_name: Flavonifractor plautii


organism_name: Mediterraneibacter torques


organism_name: Sellimonas intestinalis


organism_name: Bacteroides xylanisolvens


organism_name: Streptococcus ilei


organism_name: Bifidobacterium dentium


organism_name: Akkermansia muciniphila


organism_name: [Clostridium] innocuum


organism_name: Anaerostipes sp.


organism_name: Terrisporobacter mayombei


organism_name: Klebsiella variicola


organism_name: Veillonella parvula


organism_name: Pediococcus acidilactici


organism_name: Phascolarctobacterium faecium


organism_name: Alistipes putredinis


organism_name: Pediococcus pentosaceus


organism_name: Lactococcus lactis


organism_name: Staphylococcus haemolyticus


organism_name: Citrobacter sedlakii


organism_name: Streptococcus vestibularis


organism_name: Intestinibacter bartlettii


organism_name: Parabacteroides merdae


organism_name: Staphylococcus aureus


organism_name: Rothia sp. (in: high G+C Gram-positive bacteria)


organism_name: Parabacteroides distasonis


organism_name: Faecalimonas nexilis


organism_name: Streptococcus sp.


organism_name: Phocaeicola vulgatus


organism_name: Bifidobacterium dentium


organism_name: Lacticaseibacillus rhamnosus


organism_name: Streptococcus thermophilus


organism_name: Megasphaera micronuciformis


organism_name: Lacticaseibacillus paracasei


organism_name: Staphylococcus epidermidis


organism_name: [Clostridium] innocuum


organism_name: Wansuia hejianensis


organism_name: Phocaeicola dorei


organism_name: Lawsonibacter faecis


organism_name: Blautia sp.


organism_name: Pediococcus pentosaceus


organism_name: Akkermansia muciniphila


organism_name: Parabacteroides distasonis


organism_name: Thomasclavelia ramosa


organism_name: Enterococcus lactis


organism_name: Rothia sp. (in: high G+C Gram-positive bacteria)


organism_name: Levilactobacillus brevis


organism_name: Veillonella parvula


organism_name: Akkermansia massiliensis


organism_name: Cuneatibacter caecimuris


organism_name: Clostridium sp.


organism_name: Lacticaseibacillus paracasei


organism_name: Lacticaseibacillus rhamnosus


organism_name: Parabacteroides merdae


organism_name: Staphylococcus epidermidis


organism_name: Bifidobacterium adolescentis


organism_name: Flavonifractor plautii


organism_name: Blautia celeris


organism_name: Candidatus Acutalibacter ornithocaccae


organism_name: Faecalicatena orotica


organism_name: Thomasclavelia ramosa


organism_name: Ruthenibacterium sp.


organism_name: Blautia obeum


organism_name: Massilioclostridium sp.


organism_name: Sellimonas intestinalis


organism_name: Wansuia hejianensis


organism_name: Escherichia coli


organism_name: Anaeromassilibacillus sp.


organism_name: Lactonifactor sp.


organism_name: Bacteroides caccae


organism_name: Ruthenibacterium lactatiformans


organism_name: Anthropogastromicrobium sp.


organism_name: Mediterraneibacter sp.


organism_name: [Clostridium] innocuum


organism_name: Enterocloster bolteae


organism_name: Phocaeicola dorei


organism_name: [Clostridium] hylemonae


organism_name: Streptococcus oralis


organism_name: Parabacteroides distasonis


organism_name: Cuneatibacter caecimuris


organism_name: Phocaeicola vulgatus


organism_name: Rothia mucilaginosa


organism_name: Staphylococcus haemolyticus


organism_name: Klebsiella pneumoniae


organism_name: Escherichia coli


organism_name: Alistipes indistinctus


organism_name: Flavonifractor plautii


organism_name: Staphylococcus epidermidis


organism_name: Alistipes inops


organism_name: Phascolarctobacterium faecium


organism_name: Enorma massiliensis


organism_name: Enterococcus gallinarum


organism_name: Pauljensenia sp.


organism_name: Isoptericola variabilis


organism_name: Actinomyces sp.


organism_name: Rothia sp. (in: high G+C Gram-positive bacteria)


organism_name: Bacteroides eggerthii


organism_name: Bacteroides uniformis


organism_name: Phocaeicola dorei


organism_name: Bacteroides cellulosilyticus


organism_name: Akkermansia muciniphila


organism_name: [Clostridium] innocuum


organism_name: Escherichia coli


organism_name: Blautia celeris


organism_name: Klebsiella grimontii


organism_name: Lactobacillus paragasseri


organism_name: Ligilactobacillus salivarius


organism_name: Weissella confusa


organism_name: Bifidobacterium longum


organism_name: Lawsonibacter faecis


organism_name: Streptococcus infantis


organism_name: Candidatus Fimivicinus sp.


asm_submitter: Centers for Disease Control and Prevention

organism_name: Campylobacter jejuni


organism_name: Enterobacter chengduensis


organism_name: Clostridioides difficile


organism_name: Enterococcus faecalis


organism_name: Veillonella parvula


organism_name: Bacteroides ovatus


organism_name: Phocaeicola dorei


organism_name: Bacteroides thetaiotaomicron


organism_name: Rothia mucilaginosa


organism_name: Klebsiella grimontii


asm_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

organism_name: Listeria monocytogenes


organism_name: Streptococcus parasanguinis


organism_name: Streptococcus mitis


organism_name: Mediterraneibacter gnavus


organism_name: Lacticaseibacillus rhamnosus


organism_name: Pauljensenia sp.


organism_name: Phascolarctobacterium faecium


asm_submitter: CDC

organism_name: Vibrio parahaemolyticus


organism_name: Enterocloster bolteae


organism_name: [Clostridium] hylemonae


organism_name: Blautia celeris


organism_name: Rothia dentocariosa


organism_name: [Clostridium] innocuum


organism_name: Trueperella pyogenes


organism_name: Enterococcus faecalis


organism_name: Rothia mucilaginosa


organism_name: Klebsiella grimontii


organism_name: Ruthenibacterium lactatiformans


organism_name: Streptococcus intermedius


organism_name: Streptococcus parasanguinis


organism_name: Streptococcus gordonii


organism_name: Anaerofustis sp.


organism_name: Mediterraneibacter gnavus


organism_name: Lactobacillus delbrueckii


asm_submitter: National Center for Biotechnology Information

organism_name: Yersinia enterocolitica


organism_name: Escherichia coli


organism_name: Klebsiella pneumoniae


asm_submitter: Genomics and Resistant Microbes (GeRM)

organism_name: Enterobacter hormaechei


organism_name: Enterocloster clostridioformis


organism_name: [Clostridium] hylemonae


organism_name: Wansuia hejianensis


organism_name: Lancefieldella sp.


organism_name: Blautia celeris


organism_name: [Clostridium] innocuum


organism_name: Trueperella pyogenes


organism_name: Ruthenibacterium lactatiformans


organism_name: Shuttleworthella satelles


organism_name: Streptococcus parasanguinis


organism_name: Veillonella parvula


organism_name: Parabacteroides distasonis


organism_name: Bacteroides ovatus


organism_name: Phocaeicola dorei


organism_name: Dialister invisus


organism_name: Megasphaera geminata


organism_name: Vibrio parahaemolyticus


isolate: clinical

organism_name: Neisseria meningitidis


organism_name: Listeria monocytogenes


organism_name: Klebsiella pneumoniae


organism_name: Bacteroides thetaiotaomicron


asm_submitter: FDA

organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: Memorial Sloan Kettering Cancer Center HCT Microbiota


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Alistipes finegoldii


organism_name: Mogibacterium diversum


organism_name: Acutalibacter sp.


organism_name: Evtepia gabavorous


organism_name: Blautia obeum


organism_name: Faecalimonas umbilicata


organism_name: Candidatus Faecimorpha sp.


organism_name: Hungatella effluvii


organism_name: Eisenbergiella porci


organism_name: Dorea sp.


organism_name: Bacteroides ovatus


organism_name: Thomasclavelia ramosa


organism_name: Monoglobus pectinilyticus


organism_name: Eisenbergiella tayi


organism_name: Gordonibacter urolithinfaciens


organism_name: Blautia celeris


organism_name: Parabacteroides merdae


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Mediterraneibacter torques


organism_name: Phocaeicola dorei


organism_name: Eggerthella lenta


organism_name: [Clostridium] innocuum


organism_name: [Clostridium] scindens


organism_name: Trueperella pyogenes


organism_name: Phascolarctobacterium faecium


organism_name: Streptococcus parasanguinis


organism_name: Alistipes onderdonkii


organism_name: Parabacteroides distasonis


organism_name: Bacteroides thetaiotaomicron


organism_name: Veillonella parvula


organism_name: Enterocloster bolteae


organism_name: Bacteroides ovatus


organism_name: Klebsiella pneumoniae


organism_name: Escherichia coli


organism_name: Rothia mucilaginosa


organism_name: Klebsiella grimontii


organism_name: Anaerobutyricum hallii


organism_name: Fusicatenibacter saccharivorans


organism_name: Anaerostipes hadrus


organism_name: Collinsella sp.


organism_name: Isoptericola variabilis


organism_name: Phocaeicola dorei


organism_name: Segatella salivae


asm_submitter: USDA FSIS

organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


organism_name: Parabacteroides distasonis


organism_name: Bacteroides thetaiotaomicron


organism_name: Candidatus Acutalibacter ornithocaccae


organism_name: Hominenteromicrobium mulieris


organism_name: Veillonella parvula


organism_name: Ruminococcus bromii


organism_name: Klebsiella pneumoniae


organism_name: Rothia mucilaginosa


organism_name: Anaerotardibacter sp.


organism_name: Evtepia gabavorous


asm_submitter: University of Helsinki

organism_name: Yersinia enterocolitica


isolate: Virulence-plasmid cured derivative of strain 8081


organism_name: Acutalibacteraceae bacterium


organism_name: Faecalibacterium sp.


organism_name: Candidatus Limivicinus sp.


organism_name: Lachnospiraceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined


organism_name: Oscillospiraceae bacterium


organism_name: Agathobacter rectalis


organism_name: Faecousia sp.


organism_name: Eubacterium sp.


organism_name: Candidatus Cryptobacteroides bacterium


organism_name: Catenibacterium mitsuokai


organism_name: Eubacteriales bacterium


organism_name: Ligilactobacillus ruminis


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: Ruminococcus sp.


organism_name: Christensenellales bacterium


organism_name: Vibrio cholerae


organism_name: Escherichia coli


asm_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

organism_name: Klebsiella pneumoniae


organism_name: Salmonella enterica subsp. enterica serovar Newport


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Campylobacter coli


asm_submitter: Virginia Tech

organism_name: Obscuribacteraceae bacterium (SeqCode)


organism_name: Obscuribacter sp. (SeqCode)


organism_name: Vibrio parahaemolyticus


organism_name: Zoogloea sp.


organism_name: Obscuribacter phosphatis (SeqCode)


organism_name: Puniceispirillaceae bacterium (SeqCode)


organism_name: Pseudomonas aeruginosa


organism_name: Kapaibacterium sp. (SeqCode)


organism_name: Escherichia coli


organism_name: Saccharimonadales bacterium (SeqCode)


organism_name: Binatia bacterium (SeqCode)


organism_name: Shigella sonnei


organism_name: Cloacimonas sp. (SeqCode)


organism_name: Klebsiella pneumoniae


organism_name: Cloacimonadaceae bacterium (SeqCode)


organism_name: Citrobacter sedlakii


organism_name: Ruminococcoides intestinale


organism_name: Streptococcus pyogenes


organism_name: Campylobacter fetus


organism_name: Campylobacter jejuni


organism_name: Acinetobacter baumannii


organism_name: Streptococcus pneumoniae


asm_submitter: National Centre for Veterinary Type Cultures, NRCE, Sirsa Road, Hisar

organism_name: Achromobacter sp. Fo40


organism_name: Salmonella enterica subsp. enterica serovar Uganda


organism_name: Salmonella enterica subsp. enterica serovar Muenster


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Salmonella enterica subsp. enterica serovar Panama


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Amsterdam


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Salmonella enterica subsp. enterica serovar Cerro


organism_name: Klebsiella pneumoniae


organism_name: Saccharimonadales bacterium (SeqCode)


organism_name: Aliarcobacter sp.


organism_name: Kapaibacterium sp. (SeqCode)


organism_name: Cloacimonadales bacterium (SeqCode)


organism_name: Shigella sonnei


organism_name: Shigella flexneri


asm_submitter: Universidade Federal de Sao Paulo


asm_submitter: Sichuan University

organism_name: Proteus mirabilis


organism_name: Haemophilus influenzae


organism_name: Neisseria gonorrhoeae


organism_name: Neisseria meningitidis


organism_name: Streptococcus pneumoniae


organism_name: Campylobacter jejuni


organism_name: Listeria monocytogenes


organism_name: Vibrio metschnikovii


organism_name: Escherichia coli


organism_name: Vibrio parahaemolyticus


organism_name: Enterobacter hormaechei


organism_name: Klebsiella pneumoniae


asm_submitter: FDA/CFSAN

organism_name: Cronobacter sakazakii


organism_name: Salmonella enterica subsp. enterica serovar Give


organism_name: Salmonella enterica subsp. enterica serovar Schwarzengrund


organism_name: Shigella sonnei


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Salmonella enterica subsp. enterica serovar Muenchen


organism_name: Proteus mirabilis


organism_name: Salmonella enterica subsp. enterica serovar Saintpaul


organism_name: Salmonella enterica subsp. enterica serovar Kedougou


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Anatum


organism_name: Salmonella enterica subsp. enterica serovar Mississippi


organism_name: Klebsiella michiganensis


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Kentucky


organism_name: Campylobacter jejuni


organism_name: Campylobacter upsaliensis


organism_name: Campylobacter coli


asm_submitter: Center for Food Safety and Applied Nutrition

organism_name: Salmonella enterica


organism_name: Listeria monocytogenes


organism_name: Legionella pneumophila


organism_name: Vibrio parahaemolyticus


organism_name: Providencia stuartii


organism_name: Enterobacter kobei


organism_name: Proteus mirabilis


organism_name: Shigella flexneri


organism_name: Klebsiella pneumoniae


organism_name: Citrobacter freundii


organism_name: Shigella sonnei


organism_name: Pseudomonas aeruginosa


organism_name: Escherichia coli


organism_name: Serratia marcescens


organism_name: Klebsiella aerogenes


organism_name: Enterobacter hormaechei


asm_submitter: Nankai University


asm_submitter: University of Illinois Urbana-Champaign

infraspecific_name: strain=ATCC 43058

organism_name: Agathobaculum desmolans ATCC 43058


asm_submitter: University of Chinese Academy of Sciences

organism_name: Paenibacillus sp. SY6


asm_submitter: Zhejiang University

organism_name: Acinetobacter baumannii


asm_submitter: Korea Institute of Ocean Science and Technology

organism_name: Pseudoalteromonas rubra


organism_name: Pseudoalteromonas luteoviolacea


asm_submitter: Kalasalingam Academy of Research and Education

organism_name: Halomonas sp. A3S


asm_submitter: ICAR-National Institute of Veterinary Epidemiology and disease informatics

organism_name: Staphylococcus aureus


asm_submitter: Instituto de investigaciones agropecuarias (INIA)

infraspecific_name: strain=RGM 3692

organism_name: Amycolatopsis sp. RGM 3692


asm_submitter: The Capital Institute of Pediatrics

organism_name: Veillonella sp. Ser01


asm_submitter: The Kids Research Institute Australia

organism_name: Streptococcus pyogenes


organism_name: Streptococcus constellatus


organism_name: Streptococcus rubneri


asm_submitter: Yuan Ze University

organism_name: Lacticaseibacillus paracasei subsp. paracasei


asm_submitter: Indiana University

isolate: nectar

organism_name: Bombella apis


isolate: L5 larva


isolate: Nurse crop


organism_name: Bombella favorum


isolate: queen gut


organism_name: Streptococcus dysgalactiae


asm_submitter: University of Veterinary Sciences Brno

organism_name: Escherichia coli


asm_submitter: Shanghai Pudong New Area Center for Disease Control and Prevention


asm_submitter: INRA

organism_name: Lactiplantibacillus pentosus


organism_name: Lacticaseibacillus rhamnosus


asm_submitter: National Energy Technology Laboratory ,  Leidos

organism_name: Mesobacillus sp.


organism_name: Propionicimonas sp.


organism_name: Acetobacterium sp.


organism_name: Gudongella sp.


organism_name: Proteiniclasticum sp.


organism_name: Proteiniphilum sp.


asm_submitter: CIAD, A.C.

infraspecific_name: strain=CAIM 365

organism_name: Vibrio sp. CAIM 365


infraspecific_name: strain=CAIM 364

organism_name: Vibrio sp. CAIM 364


infraspecific_name: strain=CAIM 363T

organism_name: Vibrio sp. CAIM 363


asm_submitter: BIRDEM

organism_name: Burkholderia pseudomallei


asm_submitter: Second Institute of Oceanography, Ministry of Natural Resources

organism_name: Gammaproteobacteria bacterium


organism_name: Sulfurovum sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small; genus undefined

organism_name: Thiohalomonadaceae bacterium


organism_name: Pseudomonadales bacterium


organism_name: Microbulbiferaceae bacterium


organism_name: Thermodesulfobacteriota bacterium


annotation_name: Annotation submitted by JLU

annotation_provider: JLU

asm_submitter: JLU

organism_name: Brucella vulpis

refseq_category: reference genome

relation_to_type_material: assembly from type material


annotation_name: Annotation submitted by ANSES

annotation_provider: ANSES

asm_submitter: ANSES

organism_name: Anaplasma phagocytophilum


annotation_name: Annotation submitted by INRA STLO

annotation_provider: INRA STLO

asm_submitter: INRA STLO

infraspecific_name: strain=CIRM-BIA 118

organism_name: Propionibacterium freudenreichii


infraspecific_name: strain=CIRM-BIA 122


infraspecific_name: strain=ITG P18


infraspecific_name: strain=CIRM-BIA 135


infraspecific_name: strain=CIRM-BIA 134


infraspecific_name: strain=CIRM-BIA 123


infraspecific_name: strain=CIRM-BIA 119


infraspecific_name: strain=ITG P23


infraspecific_name: strain=CIRM-BIA 121


annotation_name: Annotation submitted by URMITE

annotation_provider: URMITE

asm_submitter: URMITE

organism_name: Peribacillus simplex


annotation_name: Annotation submitted by CHUV-UNIL

annotation_provider: CHUV-UNIL

asm_submitter: CHUV-UNIL

infraspecific_name: strain=CRIB 30

organism_name: Estrella lausannensis


annotation_name: Annotation submitted by WTSI

annotation_provider: WTSI

asm_submitter: WTSI

organism_name: Paraclostridium sordellii


annotation_name: Annotation submitted by VETAGROSUP

annotation_provider: VETAGROSUP

asm_name: Escherichia coli O26:H11 21765

asm_submitter: VETAGROSUP

excluded_from_refseq: RefSeq annotation failed

infraspecific_name: strain=Escherichia coli O26:H11 21765

organism_name: Escherichia coli O26:H11


asm_submitter: LSHTM

infraspecific_name: strain=Campylobacter jejuni

isolate: NECK SKIN

organism_name: Campylobacter jejuni


asm_submitter: Genoscope CEA

organism_name: Xanthomonas campestris pv. campestris str. CN11


organism_name: Xanthomonas campestris pv. campestris str. CN12


excluded_from_refseq: misassembled

organism_name: Xanthomonas campestris pv. campestris str. CN13


organism_name: Xanthomonas campestris pv. campestris str. CN20


annotation_name: Annotation submitted by ICBIBE-UV

annotation_provider: ICBIBE-UV

asm_submitter: ICBIBE-UV

infraspecific_name: strain=SCt-VLC

organism_name: Serratia symbiotica SCt-VLC


organism_name: Xanthomonas campestris pv. campestris str. CFBP 4953


annotation_name: Annotation submitted by WUR

annotation_provider: WUR

asm_submitter: WUR

organism_name: Actinomyces succiniciruminis

release_type: Minor


asm_submitter: UOL

excluded_from_refseq: missing strain identifier

organism_name: Clostridioides difficile


excluded_from_refseq: RefSeq annotation failed; many frameshifted proteins


organism_name: Chlamydia abortus


excluded_from_refseq: RefSeq annotation failed; annotation fails completeness check; many frameshifted proteins


asm_name: FRIFI

infraspecific_name: strain=FRIFI

organism_name: Romboutsia hominis


asm_submitter: Yuan

infraspecific_name: strain=Salmonella enterica subsp. enterica serovar Typhi St508-GX1999


infraspecific_name: strain=Salmonella enterica subsp. enterica serovar Typhi GZ-18


infraspecific_name: strain=Salmonella enterica subsp. enterica serovar Typhi St1332-GZ2011


infraspecific_name: strain=Salmonella enterica subsp. enterica serovar Typhi St1428-XJ2010


organism_name: Salmonella enterica subsp. enterica serovar Typhi


asm_submitter: IZSLER

organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Romboutsia lituseburensis


infraspecific_name: strain=Salmonella enterica subsp. enterica serovar Typhi St383-GX1995


infraspecific_name: strain=Salmonella enterica subsp. enterica serovar Typhi St1481-XJ2012


annotation_name: Annotation submitted by Wageningen University

annotation_provider: Wageningen University

asm_submitter: Wageningen University

infraspecific_name: strain=ZWB

organism_name: Ercella succinigenes


excluded_from_refseq: annotation fails completeness check


asm_submitter: UH

group: archaea

organism_name: Halobacterium hubeiense


annotation_name: Annotation submitted by SC

annotation_provider: SC

asm_submitter: SC

organism_name: Streptococcus pneumoniae


annotation_name: Annotation submitted by Genoscope CEA

annotation_provider: Genoscope CEA

organism_name: Thiomonas arsenitoxydans


excluded_from_refseq: abnormal gene to sequence ratio; genome length too large

organism_name: Thiomonas sp. CB3


annotation_name: Annotation submitted by JOHN INNES CENTRE, NORWICH, UK.

annotation_provider: JOHN INNES CENTRE, NORWICH, UK.

asm_submitter: JOHN INNES CENTRE, NORWICH, UK.

organism_name: Pseudomonas sp. 25 E 4


organism_name: Pseudomonas sp. 52 E 6


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Pseudomonas sp. 22 E 5


organism_name: Pseudomonas sp. 24 E 13


organism_name: Pseudomonas sp. 25 R 14


organism_name: Pseudomonas sp. 28 E 9


organism_name: Pseudomonas sp. 24 R 17


organism_name: Streptococcus equi subsp. equi


annotation_name: Annotation submitted by CENTRE FOR GENOMIC RESEARCH (CGR)

annotation_provider: CENTRE FOR GENOMIC RESEARCH (CGR)

asm_submitter: CENTRE FOR GENOMIC RESEARCH (CGR)

infraspecific_name: strain=morsitans

organism_name: Sodalis glossinidius str. 'morsitans'


organism_name: Staphylococcus aureus


organism_name: Pseudomonas sp. 37 R 15


organism_name: Pseudomonas sp. 31 R 17


organism_name: Pseudomonas sp. 44 R 15


asm_submitter: MHH

organism_name: Helicobacter pylori SA216A


annotation_name: Annotation submitted by UNIV-LORRAINE

annotation_provider: UNIV-LORRAINE

asm_submitter: UNIV-LORRAINE

organism_name: Carnobacterium maltaromaticum


asm_submitter: OSU/OARDC

excluded_from_refseq: unverified source organism

organism_name: Serratia nematodiphila WCU338


organism_name: Vibrio nigripulchritudo SFn118


annotation_name: Annotation submitted by PASTEUR

annotation_provider: PASTEUR

asm_submitter: PASTEUR

organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Streptococcus pneumoniae


annotation_name: Annotation submitted by CEBITEC

annotation_provider: CEBITEC

asm_submitter: CEBITEC

organism_name: Paracoccus aminovorans


asm_submitter: URMITE

organism_name: Bartonella doshiae


organism_name: Pseudomonas sp. 34 E 7


organism_name: Clostridioides difficile


organism_name: Halobacterium hubeiense


organism_name: Pseudomonas sp. 31 E 5


asm_submitter: CARDIFF UNIVERSITY

organism_name: Pseudomonas aeruginosa


organism_name: Pseudomonas sp. 58 R 12


organism_name: Pseudomonas sp. 24 E 1


organism_name: Pseudomonas sp. 31 E 6


organism_name: Pseudomonas sp. 35 E 8


organism_name: Pseudomonas sp. 8 R 14


organism_name: Burkholderia pseudomallei


organism_name: Pseudomonas sp. 58 R 3


asm_submitter: UNIVERSITY OF LIVERPOOL

organism_name: Staphylococcus hominis


asm_submitter: Universitaetsklinik Tuebingen

organism_name: Klebsiella pneumoniae


annotation_name: Annotation submitted by IRD

annotation_provider: IRD

asm_submitter: IRD

infraspecific_name: strain=STM 7183

organism_name: Paraburkholderia piptadeniae


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


annotation_name: Annotation submitted by INSTITUT PASTEUR

annotation_provider: INSTITUT PASTEUR

asm_name: VAP LM33

asm_submitter: INSTITUT PASTEUR

isolate: patient

organism_name: Escherichia coli


asm_submitter: UNIVERSITE LAVAL


asm_name: Peptoclostridium difficile


excluded_from_refseq: contaminated; fragmented assembly; low quality sequence


annotation_name: Annotation submitted by James Hutton Institute

annotation_provider: James Hutton Institute

asm_name: Serratia sp. strain LCN16

asm_submitter: James Hutton Institute

excluded_from_refseq: partial

genome_rep: Partial

organism_name: Serratia grimesii


asm_submitter: ISTITUTO SUPERIORE DI SANITA

isolate: VTEC


asm_submitter: ACADEMIC MEDICAL CENTER

organism_name: Streptococcus suis


asm_name: Draft genome of Staphylococcus pasteuri, strain W5

asm_submitter: Universitetsparken 15

organism_name: Kocuria palustris


organism_name: Clostridioides difficile


organism_name: Terrisporobacter glycolicus


annotation_name: Annotation submitted by UNIVERSITY OF LIVERPOOL

annotation_provider: UNIVERSITY OF LIVERPOOL

organism_name: Achromobacter xylosoxidans


asm_submitter: Genoscope CEA

organism_name: Planktothrix sp. PCC 11201


organism_name: Planktothrix tepida PCC 9214


organism_name: Planktothrix paucivesiculata PCC 9631


asm_name: Planktothrix rubescens PCC 7821

infraspecific_name: strain=PCC 7821

organism_name: Planktothrix rubescens CCAP 1459/22


annotation_name: Annotation submitted by UNIVERSITY OF HELSINKI

annotation_provider: UNIVERSITY OF HELSINKI

asm_submitter: UNIVERSITY OF HELSINKI

organism_name: Leuconostoc inhae


asm_submitter: IZSLER


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins


annotation_name: Annotation submitted by UNIVERSITY OF SOUTH BOHEMIA

annotation_provider: UNIVERSITY OF SOUTH BOHEMIA

asm_name: TPTPER

asm_submitter: UNIVERSITY OF SOUTH BOHEMIA

excluded_from_refseq: missing rRNA genes; missing tRNA genes

organism_name: Candidatus Tremblayella princeps


asm_name: TPPLON


asm_name: BAL 242 assembly

asm_submitter: LSHTM

isolate: BAL 242

organism_name: Acinetobacter baumannii


excluded_from_refseq: contaminated


excluded_from_refseq: contaminated; fragmented assembly; genome length too large


asm_name: BAL 062 Assembly

isolate: BAL 062


asm_name: Sphingobium sp Z007 rep B without predator

asm_submitter: UNIVERSITY OF ZUERICH

organism_name: Sphingobium sp. Z007


organism_name: Planktothrix serta PCC 8927


asm_name: Pseudoclavibacter helvolus, strain W3

organism_name: Paeniglutamicibacter antarcticus


annotation_name: Annotation submitted by IFPEN

annotation_provider: IFPEN

asm_name: C. beijerinckii DSM 6423

asm_submitter: IFPEN

isolate: C. beijerinckii DSM 6423

organism_name: Clostridium beijerinckii


organism_name: Escherichia coli


organism_name: Streptococcus suis


annotation_name: Annotation submitted by ROTHAMSTED RESEARCH

annotation_provider: ROTHAMSTED RESEARCH

asm_submitter: ROTHAMSTED RESEARCH

organism_name: Bradyrhizobium sp.


organism_name: Bradyrhizobium sp. G22


asm_name: BAL 255 assembly

isolate: BAL 255


asm_name: BAL 266 Assembly

isolate: BAL 266


asm_name: ATCC19606 assembly


asm_name: BAL 062 assembly


organism_name: Clostridioides difficile


organism_name: Terrisporobacter othiniensis


asm_submitter: ANSES

organism_name: Bacillus anthracis


infraspecific_name: strain=Kerr 14

organism_name: Agrobacterium tumefaciens str. Kerr 14


excluded_from_refseq: contaminated; fragmented assembly; genome length too large; low quality sequence


excluded_from_refseq: contaminated; RefSeq annotation failed; fragmented assembly; genome length too large


asm_name: Sphingobium sp Z007 rep A without predator


organism_name: Agrobacterium salinitolerans str. Hayward 0363


organism_name: Agrobacterium fabacearum TT111


infraspecific_name: strain=NCPPB 1641

organism_name: Agrobacterium deltaense NCPPB 1641


infraspecific_name: strain=CFBP 6626

organism_name: Agrobacterium genomosp. 5 str. CFBP 6626


infraspecific_name: strain=CFBP 5621

organism_name: Agrobacterium tumefaciens str. CFBP 5621


infraspecific_name: strain=CFBP 6927

organism_name: Agrobacterium genomosp. 13 str. CFBP 6927


infraspecific_name: strain=NCPPB 925

organism_name: Agrobacterium sp. NCPPB 925


annotation_name: Annotation submitted by University of Athens

annotation_provider: University of Athens

asm_name: Pyrococcus chitonophagus genome sequence

asm_submitter: University of Athens

organism_name: Thermococcus chitonophagus


asm_name: TPFVIR

isolate: TPFVIR

organism_name: Candidatus Tremblayella princeps


asm_name: Peptoclostridium difficile


excluded_from_refseq: contaminated; fragmented assembly; partial


organism_name: Escherichia coli


organism_name: Streptococcus suis


organism_name: Sphingobium sp. Z007


asm_name: Sphingobium sp Z007 rep B with predator


asm_name: Sphingobium sp Z007 rep A with predator


asm_name: Sphingobium sp Z007 rep C with predator


infraspecific_name: strain=CFBP 5494

organism_name: Agrobacterium genomosp. 2 str. CFBP 5494


organism_name: Agrobacterium deltaense RV3


infraspecific_name: strain=Zutra 3-1

organism_name: Agrobacterium deltaense Zutra 3/1


organism_name: Agrobacterium fabrum str. J-07


infraspecific_name: strain=CFBP 6623

organism_name: Agrobacterium tomkonis CFBP 6623


excluded_from_refseq: contaminated; genome length too large

organism_name: Clostridioides difficile


organism_name: Bacillus anthracis


organism_name: Agrobacterium fabacearum S56


asm_name: TPPMAR


asm_name: Draft genome of Kocuria varians G6

isolate: Kocuria varians

organism_name: Kocuria varians


asm_name: Draft genome of Pseudoclavibacter helvolus G8

isolate: Pseudoclavibacter helvolus

organism_name: Pseudoclavibacter helvolus


asm_name: Lactobacillus oligofermentans LMG 22743 genome

isolate: LACOL

organism_name: Paucilactobacillus oligofermentans DSM 15707 = LMG 22743


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


annotation_name: Annotation submitted by WUR

annotation_provider: WUR

asm_submitter: WUR

infraspecific_name: strain=CRIB

organism_name: Romboutsia ilealis


annotation_name: Annotation submitted by INRA GRIGNON

annotation_provider: INRA GRIGNON

asm_name: Genome sequence of Corynebacterium variabile Mu292

asm_submitter: INRA GRIGNON

organism_name: Corynebacterium variabile


asm_submitter: AARHUS UNIVERSITY, DENMARK

organism_name: Fusobacterium sp.


excluded_from_refseq: RefSeq annotation failed

isolate: Bacteria

organism_name: Francisella tularensis subsp. holarctica


asm_submitter: UNIVERSITE LAVAL


asm_submitter: ISTITUTO SUPERIORE DI SANITA

organism_name: Escherichia coli


annotation_name: Annotation submitted by INSTITUTO NACIONAL DE SALUD

annotation_provider: INSTITUTO NACIONAL DE SALUD

asm_submitter: INSTITUTO NACIONAL DE SALUD

isolate: Escherichia coli


asm_submitter: CEBITEC


organism_name: Leuconostoc gasicomitatum


annotation_name: Annotation submitted by Institute of Biotechnology, Univerity of Helsinki

organism_name: Propionibacterium freudenreichii subsp. shermanii


organism_name: Leuconostoc inhae


annotation_name: Annotation submitted by ICL-CFB

annotation_provider: ICL-CFB

asm_submitter: ICL-CFB

organism_name: Novacetimonas hansenii


asm_submitter: Universitetsparken 15

excluded_from_refseq: contaminated; unverified source organism

isolate: Psychrobacter cibarius

organism_name: Psychrobacter cibarius


asm_name: Draft genome of Kocuria palustris, strain W4


organism_name: Clostridioides difficile


excluded_from_refseq: misassembled


asm_submitter: IZSLER


asm_submitter: Yuan

infraspecific_name: strain=Salmonella enterica subsp. enterica serovar Typhi ZJ98-11


annotation_name: Annotation submitted by Wageningen University

annotation_provider: Wageningen University

asm_submitter: Wageningen University

infraspecific_name: strain=INE

organism_name: Acididesulfobacillus acetoxydans


annotation_name: Annotation submitted by URMITE

annotation_provider: URMITE

asm_submitter: URMITE

excluded_from_refseq: not used as type; partial

organism_name: Arthrobacter saudimassiliensis


annotation_name: Annotation submitted by ICBIBE-UV

annotation_provider: ICBIBE-UV

asm_submitter: ICBIBE-UV

excluded_from_refseq: unverified source organism; genome length too small

infraspecific_name: strain=STs

isolate: Pazieg

organism_name: Serratia symbiotica


infraspecific_name: strain=BTs

organism_name: Buchnera aphidicola (Tuberolachnus salignus)


asm_name: Clostridia bin genome 5

asm_submitter: Center for Microbial Communities

excluded_from_refseq: derived from metagenome; genus undefined; partial

organism_name: uncultured Clostridia bacterium


annotation_name: Annotation submitted by UNIVERSITY OF WARWICK

annotation_provider: UNIVERSITY OF WARWICK

asm_submitter: UNIVERSITY OF WARWICK

excluded_from_refseq: genus undefined

organism_name: Eubacteriaceae bacterium CHKCI004


annotation_name: Annotation submitted by SC

annotation_provider: SC

asm_submitter: SC

organism_name: Streptococcus pneumoniae


organism_name: Neisseria meningitidis


organism_name: Listeria monocytogenes


organism_name: Haemophilus influenzae


organism_name: Salmonella enterica subsp. enterica serovar Typhi


organism_name: Enterococcus faecalis


organism_name: Staphylococcus aureus


asm_submitter: UNIVERSITY OF MELBOURNE


asm_name: Clostridia bin genome 3


organism_name: Clostridiales bacterium CHKCI006


annotation_name: Annotation submitted by DOE - Joint Genome Institute

annotation_provider: DOE - Joint Genome Institute

asm_name: IMG-taxon 2615840617 annotated assembly

asm_submitter: DOE - Joint Genome Institute

organism_name: Apibacter mensalis


asm_name: Xanthomonas massiliensis

organism_name: Xanthomonas massiliensis


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


annotation_name: Annotation submitted by IRD

annotation_provider: IRD

asm_submitter: IRD

infraspecific_name: strain=STM 7296

organism_name: Paraburkholderia ribeironis


asm_submitter: UNIVERSITE LAVAL

organism_name: Clostridioides difficile


asm_name: TPMHIR

asm_submitter: UNIVERSITY OF SOUTH BOHEMIA

organism_name: Candidatus Tremblayella princeps


asm_name: Clostridia bin genome 4


asm_name: acinetobacter baumannii isolate  strainD

infraspecific_name: strain=D

organism_name: Acinetobacter baumannii


asm_name: acinetobacter baumannii isolate  strainE

infraspecific_name: strain=E


asm_name: Clostridia bin genome 2

organism_name: uncultured Clostridia bacterium


asm_name: acinetobacter baumannii isolate  strainB

infraspecific_name: strain=B


organism_name: Alistipes sp. CHKCI003


asm_name: Paenibacillus phoceensis

organism_name: Paenibacillus phocaeensis


asm_name: Enterobacter timonensis

organism_name: Pseudenterobacter timonensis


organism_name: Streptococcus pneumoniae


organism_name: Neisseria meningitidis


organism_name: Listeria monocytogenes