infraspecific_name: strain=NILS52:D /STw 963 /STp 963 / O2:H18


asm_submitter: UMR 1137 IAME

assembly_level: Contig

assembly_type: haploid

genome_rep: Full

group: bacteria

infraspecific_name: strain=NILS42:D /STw 38 /STp 8 / Oneg:H30

isolate: Urine

organism_name: Escherichia coli

paired_asm_comp: identical

release_type: Major

version_status: latest


infraspecific_name: strain=NILS20:B2 /STw 452 /STp 838 / O81:H27

isolate: Blood


infraspecific_name: strain=NILS17:A /STw 2739 /STp 132 / O21:H52


infraspecific_name: strain=NILS32:A /STw 10 /STp 2 / O11:H4


infraspecific_name: strain=NILS48:C /STw 23 /STp 7 / O78:H4


infraspecific_name: strain=NILS56:D /STw 405 /STp 44 / O102:H6


infraspecific_name: strain=NILS53:B2 /STw 131 /STp 506 / O16:H5


infraspecific_name: strain=NILS66:B2 /STw 140 /STp 1 / O2:H5


infraspecific_name: strain=NILS47:C /STw 88 /STp 961 / O8:H19


asm_submitter: Wellcome Sanger Institute

assembly_level: Complete Genome

organism_name: Klebsiella pneumoniae


annotation_name: Annotation submitted by Wellcome Sanger Institute

annotation_provider: Wellcome Sanger Institute

assembly_level: Scaffold

organism_name: Serratia entomophila


annotation_name: Annotation submitted by Universite de Strasbourg

annotation_provider: Universite de Strasbourg

asm_name: Assembled genome of Aminobacter niigataensis MD1

asm_submitter: Universite de Strasbourg

organism_name: Aminobacter niigataensis

refseq_category: reference genome


asm_submitter: EMG

excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Peptoniphilus sp.


excluded_from_refseq: derived from metagenome

organism_name: uncultured Arcanobacterium sp.


organism_name: Lactobacillus jensenii


organism_name: Gemelliphila asaccharolytica


organism_name: Mobiluncus mulieris


organism_name: Anaerococcus tetradius


organism_name: uncultured Dialister sp.


organism_name: uncultured Atopobium sp.


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Gardnerella vaginalis


excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small


organism_name: Ureaplasma parvum


organism_name: Sneathia sanguinegens


organism_name: Porphyromonas uenonis


organism_name: uncultured Porphyromonas sp.


excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Corynebacterium sp.


organism_name: Prevotella disiens


organism_name: uncultured Lactobacillus sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: uncultured Clostridia bacterium


organism_name: uncultured Bifidobacteriaceae bacterium


organism_name: uncultured Gordonibacter sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Coriobacteriales bacterium


organism_name: Escherichia coli


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Mobiluncus curtisii


organism_name: Prevotella bivia


organism_name: Pseudoglutamicibacter albus


organism_name: Brevibacterium ravenspurgense


organism_name: Atopobium deltae


organism_name: uncultured Megasphaera sp.


organism_name: Fusobacterium gonidiaformans


organism_name: uncultured Atopobium sp.


organism_name: uncultured Peptostreptococcus sp.


organism_name: Campylobacter ureolyticus


organism_name: uncultured Sneathia sp.


organism_name: Gardnerella vaginalis


organism_name: Mageeibacillus indolicus


organism_name: Lactobacillus gasseri


organism_name: uncultured Gardnerella sp.


organism_name: Finegoldia magna


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Prevotella melaninogenica


organism_name: Veillonella montpellierensis


organism_name: uncultured Nosocomiicoccus sp.


organism_name: uncultured Veillonellaceae bacterium


organism_name: uncultured Rickettsiales bacterium


organism_name: Hallella colorans


organism_name: uncultured Clostridia bacterium


organism_name: Peptococcus niger


organism_name: Proteus mirabilis


organism_name: Haemophilus parainfluenzae


organism_name: uncultured Tessaracoccus sp.


organism_name: uncultured Actinomyces sp.


organism_name: Peptostreptococcus anaerobius


organism_name: uncultured Prevotella sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Helcococcus sp.


organism_name: uncultured Mobiluncus sp.


organism_name: Staphylococcus epidermidis


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Atopobium sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: Acinetobacter nosocomialis


organism_name: uncultured Tissierellia bacterium


organism_name: Gardnerella vaginalis


organism_name: Metamycoplasma hominis


organism_name: Hoylesella timonensis


organism_name: Candidatus Malacoplasma girerdii


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: uncultured Clostridia bacterium


organism_name: Bifidobacterium breve


organism_name: uncultured Corynebacterium sp.


organism_name: Peptoniphilus vaginalis


organism_name: uncultured Peptoniphilus sp.


organism_name: Anaerococcus senegalensis


organism_name: uncultured Francisella sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Mycoplasma sp.


organism_name: Lactobacillus iners


excluded_from_refseq: contaminated; derived from metagenome

organism_name: uncultured Facklamia sp.


organism_name: Actinomyces culturomici


organism_name: Jonquetella anthropi


organism_name: uncultured Atopobium sp.


organism_name: Actinobaculum massiliense


organism_name: Peptoniphilus lacrimalis


organism_name: Gardnerella vaginalis


organism_name: Streptococcus agalactiae


organism_name: Peptoniphilus harei


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Corynebacterium riegelii


organism_name: uncultured Porphyromonas sp.


organism_name: Lactobacillus crispatus


organism_name: uncultured Coriobacteriales bacterium


organism_name: uncultured Clostridia bacterium


organism_name: Prevotella amnii


organism_name: Hoylesella buccalis


organism_name: Anaerococcus hydrogenalis


organism_name: uncultured Prevotella sp.


organism_name: uncultured Bulleidia sp.


organism_name: uncultured Lachnoanaerobaculum sp.


excluded_from_refseq: contaminated; derived from metagenome; genome length too small

organism_name: Lactobacillus jensenii


organism_name: uncultured Peptoniphilus sp.


organism_name: Dialister micraerophilus


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Atopobium sp.


organism_name: uncultured Parvimonas sp.


organism_name: Aedoeadaptatus coxii


organism_name: uncultured Veillonellaceae bacterium


organism_name: Gardnerella vaginalis


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: uncultured Campylobacter sp.


organism_name: Anaerococcus vaginalis


organism_name: uncultured Tissierellia bacterium


organism_name: Aerococcus christensenii


organism_name: Ezakiella massiliensis


organism_name: Hoylesella timonensis


organism_name: Oligella urethralis


organism_name: uncultured Clostridia bacterium


annotation_name: Annotation submitted by UCSD Health

annotation_provider: UCSD Health

asm_submitter: UCSD Health

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Escherichia coli


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Eggerthella sp.


organism_name: uncultured Oscillibacter sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Dorea longicatena


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Collinsella sp.


organism_name: Coprococcus eutactus


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Enterorhabdus sp.


organism_name: Acidaminococcus intestini


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Roseburia sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Bifidobacterium pseudolongum


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Turicibacter sp.


organism_name: Dubosiella newyorkensis


organism_name: Bifidobacterium longum


organism_name: uncultured Oscillibacter sp.


organism_name: Anaerobutyricum hallii


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: [Eubacterium] siraeum


organism_name: Allocoprococcus comes


organism_name: uncultured Dorea sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Adlercreutzia equolifaciens


organism_name: uncultured Bacteroides sp.


organism_name: Bacteroides caccae


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Faecalibacterium sp.


organism_name: Veillonella parvula


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Roseburia sp.


organism_name: Streptococcus vestibularis


organism_name: uncultured Collinsella sp.


organism_name: uncultured Dialister sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured bacterium


organism_name: Escherichia coli


organism_name: uncultured Alistipes sp.


organism_name: uncultured Mollicutes bacterium


organism_name: Klebsiella variicola


organism_name: uncultured Clostridium sp.


organism_name: uncultured Solobacterium sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Slackia isoflavoniconvertens


organism_name: uncultured Blautia sp.


organism_name: uncultured Anaeromassilibacillus sp.


organism_name: Parasutterella excrementihominis


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Bacteroides sp.


organism_name: Parabacteroides merdae


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Mitsuokella sp.


organism_name: Bacteroides uniformis


organism_name: uncultured Lachnoclostridium sp.


organism_name: Bifidobacterium adolescentis


organism_name: uncultured Ruminococcus sp.


organism_name: Parolsenella catena


organism_name: Klebsiella pneumoniae


organism_name: uncultured Porphyromonadaceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

group: archaea

organism_name: Methanobrevibacter smithii


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Hungatella sp.


organism_name: uncultured bacterium


organism_name: uncultured Rhodospirillales bacterium


organism_name: Parabacteroides distasonis


organism_name: uncultured Anaerotruncus sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Alistipes sp.


organism_name: uncultured Sutterella sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Coprococcus sp.


organism_name: uncultured Faecalibacterium sp.


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Prevotella sp.


organism_name: uncultured Ruminococcus sp.


organism_name: Agathobacter rectalis


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly


organism_name: Streptococcus salivarius


organism_name: Parabacteroides johnsonii


organism_name: uncultured Roseburia sp.


organism_name: uncultured bacterium


organism_name: [Clostridium] leptum


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Eubacterium sp.


organism_name: Faecalibaculum rodentium


organism_name: Bifidobacterium bifidum


organism_name: uncultured Collinsella sp.


organism_name: Collinsella stercoris


organism_name: uncultured Catenibacterium sp.


organism_name: Lactobacillus johnsonii


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Dorea sp.


organism_name: Bacteroides ovatus


organism_name: Anaerostipes hadrus


organism_name: uncultured bacterium


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Clostridia bacterium


organism_name: Sutterella wadsworthensis


organism_name: uncultured Blautia sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: uncultured Clostridium sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Coprococcus sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Dialister sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Selenomonadales bacterium


organism_name: Alistipes putredinis


organism_name: uncultured Enterorhabdus sp.


organism_name: Akkermansia muciniphila


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Clostridia bacterium


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Paraprevotella clara


organism_name: Flavonifractor plautii


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Phascolarctobacterium sp.


excluded_from_refseq: derived from metagenome

organism_name: Bacteroides stercoris


organism_name: uncultured Clostridium sp.


organism_name: Blautia hydrogenotrophica


excluded_from_refseq: contaminated; unverified source organism; annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: Alistipes finegoldii


organism_name: uncultured Dorea sp.


organism_name: uncultured Subdoligranulum sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Bacteroides eggerthii


organism_name: uncultured bacterium


organism_name: uncultured Collinsella sp.


organism_name: Roseburia intestinalis


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Clostridia bacterium


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: uncultured Lachnobacterium sp.


organism_name: Segatella copri


organism_name: uncultured Barnesiella sp.


organism_name: uncultured Roseburia sp.


organism_name: Bacteroides thetaiotaomicron


organism_name: uncultured Clostridium sp.


organism_name: uncultured Ruminococcus sp.


asm_submitter: iai - institu des agents infectieux

organism_name: Staphylococcus aureus


excluded_from_refseq: annotation fails completeness check


excluded_from_refseq: contaminated; derived from metagenome; genus undefined

organism_name: uncultured Mollicutes bacterium


organism_name: uncultured Mycoplasma sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Lactobacillus intestinalis


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: uncultured bacterium


organism_name: uncultured Porphyromonadaceae bacterium


annotation_name: Annotation submitted by newcastle university

annotation_provider: newcastle university

asm_submitter: newcastle university

isolate: Clinical


organism_name: Lactobacillus iners


organism_name: Ureaplasma parvum


organism_name: uncultured Muribaculaceae bacterium


excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Oscillibacter sp.


organism_name: Lactobacillus jensenii


organism_name: Lactobacillus gasseri


excluded_from_refseq: contaminated; derived from metagenome

organism_name: uncultured Flavonifractor sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Escherichia coli


organism_name: uncultured cyanobacterium


organism_name: uncultured Brevinema sp.


asm_submitter: HANYANG UNIVERSITY

organism_name: Mammaliicoccus lentus


organism_name: Muribaculum intestinale


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Odoribacter sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Hungatella sp.


organism_name: Bifidobacterium pseudolongum


organism_name: uncultured Muribaculaceae bacterium


organism_name: Aeromonas veronii


organism_name: Staphylococcus aureus


organism_name: Bacteroides uniformis


organism_name: uncultured Sutterellaceae bacterium


organism_name: Lactobacillus iners


organism_name: Akkermansia muciniphila


organism_name: Clostridioides difficile


organism_name: Escherichia coli


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Dorea sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Alistipes sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Caulobacter sp.


organism_name: uncultured Bifidobacteriaceae bacterium


organism_name: uncultured Prevotella sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined


organism_name: uncultured Roseburia sp.


organism_name: uncultured Fusobacteriaceae bacterium


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Lachnoclostridium sp.


excluded_from_refseq: contaminated; derived from metagenome; genome length too small


organism_name: Staphylococcus aureus


organism_name: Bacillus subtilis


organism_name: uncultured Rikenellaceae bacterium


organism_name: uncultured Holdemania sp.


organism_name: Photobacterium carnosum


organism_name: uncultured Porphyromonadaceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: uncultured Akkermansia sp.


asm_submitter: UTRECHT UNIVERSITY

organism_name: Erysipelothrix rhusiopathiae


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Eubacterium sp.


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome

organism_name: uncultured Lactobacillus sp.


organism_name: Eubacterium plexicaudatum


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Dorea sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Prevotella sp.


organism_name: Parasutterella excrementihominis


organism_name: Bacteroides thetaiotaomicron


organism_name: uncultured Bacteroidales bacterium


organism_name: Photobacterium phosphoreum


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Mycoplasma sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: Staphylococcus aureus


organism_name: uncultured Rikenellaceae bacterium


organism_name: Erysipelothrix rhusiopathiae


organism_name: uncultured Alistipes sp.


organism_name: uncultured Spirochaetia bacterium


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Shewanella sp.


organism_name: uncultured Mollicutes bacterium


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Deferribacteraceae bacterium


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Ureaplasma sp.


organism_name: uncultured Brevinema sp.


organism_name: uncultured Clostridia bacterium


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: uncultured Roseburia sp.


organism_name: Parabacteroides goldsteinii


organism_name: uncultured Cetobacterium sp.


organism_name: Photobacterium phosphoreum


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: Mageeibacillus indolicus


organism_name: uncultured Porphyromonas sp.


organism_name: Metamycoplasma hominis


organism_name: uncultured Rikenellaceae bacterium


organism_name: Prevotella disiens


organism_name: uncultured Coriobacteriales bacterium


organism_name: uncultured Alistipes sp.


organism_name: uncultured Oceanospirillales bacterium


organism_name: uncultured Megasphaera sp.


organism_name: Gardnerella vaginalis


organism_name: uncultured Gardnerella sp.


organism_name: Staphylococcus aureus


organism_name: uncultured Fusobacteriaceae bacterium


organism_name: uncultured Helicobacter sp.


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Clostridia bacterium


organism_name: Aliivibrio salmonicida


organism_name: uncultured Lachnoclostridium sp.


organism_name: Photobacterium phosphoreum


organism_name: uncultured Cetobacterium sp.


organism_name: Bacteroides stercorirosoris


organism_name: uncultured Prevotella sp.


organism_name: Veillonella montpellierensis


organism_name: uncultured Deferribacteraceae bacterium


organism_name: Erysipelothrix rhusiopathiae


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: Akkermansia muciniphila


organism_name: uncultured Muribaculaceae bacterium


organism_name: Lactobacillus johnsonii


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Anaerotruncus sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Sneathia sp.


organism_name: uncultured Photobacterium sp.


organism_name: uncultured Atopobium sp.


organism_name: Bacteroides thetaiotaomicron


organism_name: Dialister micraerophilus


organism_name: uncultured Lactobacillus sp.


organism_name: Staphylococcus aureus


organism_name: uncultured Rikenellaceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Acetobacter sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured bacterium


organism_name: Hallella colorans


organism_name: Photobacterium iliopiscarium


organism_name: uncultured Mycoplasma sp.


organism_name: uncultured Deferribacteraceae bacterium


organism_name: uncultured Bacteroides sp.


organism_name: Dubosiella newyorkensis


organism_name: uncultured Cetobacterium sp.


organism_name: uncultured Atopobium sp.


organism_name: uncultured Verrucomicrobiales bacterium


organism_name: uncultured Ureaplasma sp.


organism_name: uncultured Photobacterium sp.


organism_name: Staphylococcus aureus


organism_name: Turicimonas muris


organism_name: uncultured Clostridium sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Fusobacteriaceae bacterium


organism_name: uncultured Clostridiaceae bacterium


organism_name: Erysipelothrix rhusiopathiae


organism_name: Parabacteroides distasonis


organism_name: uncultured Alistipes sp.


organism_name: uncultured Mycoplasmataceae bacterium


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Roseburia sp.


organism_name: uncultured Eubacterium sp.


organism_name: Parabacteroides goldsteinii


organism_name: uncultured Shewanella sp.


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Sneathia sp.


organism_name: Staphylococcus aureus


organism_name: uncultured Mycoplasma sp.


organism_name: uncultured Odoribacter sp.


organism_name: Muribaculum intestinale


organism_name: Aliivibrio salmonicida


excluded_from_refseq: unverified source organism; derived from metagenome; genus undefined

organism_name: uncultured Porphyromonadaceae bacterium


organism_name: Gardnerella vaginalis


organism_name: uncultured Brevinema sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Photobacterium sp.


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Clostridia bacterium


organism_name: Erysipelothrix rhusiopathiae


excluded_from_refseq: derived from metagenome


organism_name: Photobacterium iliopiscarium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Anaerotruncus sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Alistipes sp.


organism_name: Staphylococcus aureus


organism_name: Pseudomonas aeruginosa


organism_name: uncultured Rikenellaceae bacterium


organism_name: uncultured Mycoplasma sp.


organism_name: uncultured Spirochaetia bacterium


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Bacteroides sp.


organism_name: Bacteroides acidifaciens


organism_name: uncultured Oceanospirillales bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Bradyrhizobium sp.


organism_name: Klebsiella quasipneumoniae


organism_name: uncultured Enterovibrio sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Hungatella sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Exiguobacterium artemiae


organism_name: uncultured Coriobacteriaceae bacterium


organism_name: uncultured bacterium


organism_name: Angelakisella massiliensis


organism_name: uncultured Spirochaetia bacterium


organism_name: uncultured Mycoplasma sp.


organism_name: uncultured Rikenellaceae bacterium


organism_name: uncultured Odoribacter sp.


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Deferribacteraceae bacterium


organism_name: Staphylococcus aureus


organism_name: Prevotella bivia


organism_name: Lactobacillus crispatus


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: uncultured Atopobium sp.


organism_name: uncultured Muribaculaceae bacterium


organism_name: Hoylesella timonensis


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Gardnerella vaginalis


organism_name: uncultured Enterovibrio sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured bacterium


organism_name: Eubacterium plexicaudatum


organism_name: uncultured Bacteroidales bacterium


organism_name: Dubosiella newyorkensis


organism_name: uncultured Roseburia sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Peptococcaceae bacterium


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly; genus undefined


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Hungatella sp.


organism_name: Leuconostoc citreum


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Clostridium sp.


organism_name: Erysipelothrix rhusiopathiae


excluded_from_refseq: contaminated; derived from metagenome; genus undefined

organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Candidatus Neoarthromitus sp.


organism_name: Lactococcus lactis


organism_name: uncultured Mycoplasmataceae bacterium


organism_name: Prevotella amnii


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Mesorhizobium sp.


organism_name: Staphylococcus aureus


organism_name: Intestinimonas butyriciproducens


organism_name: uncultured Veillonellaceae bacterium


asm_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal

organism_name: Klebsiella pneumoniae


annotation_name: Annotation submitted by UNIVERSITY OF SEVILLA

annotation_provider: UNIVERSITY OF SEVILLA

asm_submitter: UNIVERSITY OF SEVILLA

excluded_from_refseq: genome length too small

organism_name: Salmonella enterica subsp. enterica serovar Bredeney


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


excluded_from_refseq: annotation fails completeness check; missing rRNA genes

organism_name: Salmonella enterica subsp. enterica serovar Kentucky


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: uncultured Muribaculaceae bacterium


excluded_from_refseq: annotation fails completeness check; missing tRNA genes


asm_submitter: university of burgos

organism_name: Campylobacter jejuni


asm_submitter: NATIONAL UNIVERSITY OF IRELAND, GALWAY

excluded_from_refseq: contaminated

organism_name: Escherichia coli


annotation_name: Annotation submitted by the university of exeter

annotation_provider: the university of exeter

asm_submitter: the university of exeter

excluded_from_refseq: genome length too large

organism_name: Acinetobacter calcoaceticus


organism_name: Acinetobacter baumannii


organism_name: Acinetobacter oleivorans


organism_name: Klebsiella ornithinolytica


organism_name: Enterobacter hormaechei


organism_name: Klebsiella michiganensis


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Enterobacter ludwigii


asm_submitter: Child Health Research Foundation

excluded_from_refseq: from large multi-isolate project

organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A


excluded_from_refseq: from large multi-isolate project; genome length too small


asm_submitter: Hopital Henri Mondor APHP

organism_name: Enterococcus faecium


asm_submitter: instituto nacional de salud del peru

organism_name: Salmonella enterica subsp. enterica serovar Typhi


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Prevotella sp.


excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Bacteroides sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured bacterium


organism_name: uncultured Lactobacillus sp.


excluded_from_refseq: unverified source organism; derived from metagenome; genus undefined


organism_name: Mucispirillum schaedleri


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Alistipes sp.


organism_name: uncultured Odoribacter sp.


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: uncultured Eubacterium sp.


excluded_from_refseq: derived from metagenome


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined


organism_name: Bacteroides acidifaciens


organism_name: uncultured Mucispirillum sp.


organism_name: uncultured Rikenella sp.


organism_name: uncultured Clostridia bacterium


organism_name: Helicobacter hepaticus


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Muribaculaceae bacterium


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: uncultured Desulfovibrio sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: uncultured Turicibacter sp.


organism_name: uncultured Rikenellaceae bacterium


organism_name: uncultured Alistipes sp.


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Odoribacter sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Mycoplasmataceae bacterium


organism_name: uncultured Sutterellaceae bacterium


organism_name: uncultured bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Helicobacter sp.


organism_name: uncultured Pseudomonadota bacterium


organism_name: uncultured Mollicutes bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Roseburia sp.


organism_name: Helicobacter japonicus


annotation_name: Annotation submitted by universite paris cite

annotation_provider: universite paris cite

asm_submitter: universite paris cite

isolate: Clostridium neonatale JD81

organism_name: Clostridium neonatale


isolate: Clostridium neonatale M101


isolate: Clostridium neonatale M103


isolate: Clostridium neonatale M102


isolate: Clostridium neonatale JD77


isolate: Clostridium neonatale M84


isolate: Clostridium neonatale M54


isolate: Clostridium neonatale M74


isolate: Clostridium neonatale M42


annotation_name: Annotation submitted by INRAE

annotation_provider: INRAE

asm_name: CIRMBP-1256 assembly

asm_submitter: INRAE

organism_name: Enterococcus cecorum


asm_name: CIRMBP-1253 assembly


asm_name: CIRMBP-1249 assembly


asm_name: CIRMBP-1269 assembly


asm_name: CIRMBP-1252 assembly


asm_name: CIRMBP-1265 assembly


asm_name: CIRMBP-1259 assembly


asm_name: CIRMBP-1255 assembly


asm_name: CIRMBP-1247 assembly


asm_name: CIRMBP-1260 assembly


asm_name: CIRMBP-1245 assembly


asm_name: CIRMBP-1210 assembly


asm_name: CIRMBP-1250 assembly


asm_name: CIRMBP-1266 assembly


asm_name: CIRMBP-1209 assembly


asm_name: CIRMBP-1257 assembly


asm_name: CIRMBP-1251 assembly


asm_name: CIRMBP-1263 assembly


asm_name: CIRMBP-1254 assembly


asm_name: CIRMBP-1268 assembly


asm_name: CIRMBP-1240 assembly


asm_name: CIRMBP-1243 assembly


asm_name: CIRMBP-1281 assembly


asm_name: CIRMBP-1241 assembly


asm_name: CIRMBP-1246 assembly


asm_name: CIRMBP-1262 assembly


asm_name: CIRMBP-1196 assembly


asm_name: CIRMBP-1267 assembly


asm_name: CIRMBP-1275 assembly


asm_name: CIRMBP-1238 assembly


asm_name: CIRMBP-1207 assembly


asm_name: CIRMBP-1197 assembly


asm_name: LBV 466  GUH-99-06-6302 assembly


asm_name: CIRMBP-1261 assembly


asm_name: CIRMBP-1233 assembly


asm_name: CIRMBP-1230 assembly


asm_name: CIRMBP-1273 assembly


asm_name: CIRMBP-1212 assembly


asm_name: CIRMBP-1274 assembly


asm_name: CIRMBP-1235 assembly


asm_name: CIRMBP-1223 assembly


asm_name: CIRMBP-1232 assembly


asm_name: CIRMBP-1270 assembly


asm_name: CIRMBP-1284 assembly


asm_name: CIRMBP-1195 assembly


asm_name: CIRMBP-1277 assembly


asm_name: CIRMBP-1228 assembly


asm_name: CIRMBP-1283 assembly


asm_name: CIRMBP-1276 assembly


asm_name: CIRMBP-1225 assembly


asm_name: CIRMBP-1229 assembly


asm_name: CIRMBP-1242 assembly


asm_name: CIRMBP-1244 assembly


asm_name: CIRMBP-1264 assembly


asm_name: CIRMBP-1208 assembly


asm_name: CIRMBP-1282 assembly


asm_name: CIRMBP-1280 assembly


asm_name: CIRMBP-1205 assembly


asm_name: CIRMBP-1211 assembly


asm_name: CIRMBP-1215 assembly


asm_name: CIRMBP-1218 assembly


asm_name: CIRMBP-1216 assembly


asm_name: CIRMBP-1220 assembly


asm_name: CIRMBP-1219 assembly


asm_name: CIRMBP-1227 assembly


asm_name: CIRMBP-1285 assembly


asm_name: CIRMBP-1217 assembly


asm_name: CIRMBP-1222 assembly


asm_name: CIRMBP-1224 assembly


asm_name: CIRMBP-1206 assembly


asm_name: CIRMBP-1214 assembly


asm_name: CIRMBP-1213 assembly


asm_name: CIRMBP-1279 assembly


asm_name: CIRMBP-1221 assembly


asm_name: CIRMBP-1248 assembly


asm_name: CIRMBP-1258 assembly


asm_name: CIRMBP-1239 assembly


asm_name: CIRMBP-1231 assembly


asm_name: CIRMBP-1271 assembly


asm_name: CIRMBP-1278 assembly


asm_name: CIRMBP-1226 assembly


asm_name: CIRMBP-1234 assembly


asm_name: CIRMBP-1237 assembly


asm_name: CIRMBP-1272 assembly


asm_name: CE2 assembly


asm_name: CIRMBP-1291 assembly


asm_name: CIRMBP-1298 assembly


asm_name: CIRMBP-1302 assembly


asm_name: CE1 assembly


asm_name: CIRMBP-1297 assembly


asm_name: CIRMBP-1299 assembly


asm_name: CIRMBP-1300 assembly


asm_name: CB-32 assembly


asm_name: CE3 assembly


asm_name: SA1 assembly


asm_name: CIRMBP-1304 assembly


asm_name: CIRMBP-1295 assembly


asm_name: CIRMBP-1303 assembly


asm_name: CIRMBP-1294 assembly


asm_name: CL-1 assembly


asm_name: SA2 assembly


asm_name: CIRMBP-1296 assembly


asm_name: CIRMBP-1290 assembly


asm_name: D-104 assembly


asm_name: B05581 assembly


asm_name: BB-66 assembly


asm_name: G-29 assembly


asm_name: SA3 assembly


asm_name: DSM 20682 assembly

organism_name: Enterococcus cecorum DSM 20682 = ATCC 43198

relation_to_type_material: assembly from type material


asm_name: CIRMBP-1301 assembly


asm_name: CIRMBP-1292 assembly


asm_name: CIRMBP-1293 assembly


asm_name: CIRMBP-1289 assembly


asm_name: CIRMBP-1288 assembly


asm_name: CIRMBP-1287 assembly


asm_name: CIRMBP-1286 assembly


organism_name: Corynebacterium mastitidis


organism_name: uncultured Clostridium sp.


organism_name: uncultured Angelakisella sp.


organism_name: uncultured Dorea sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Oscillospiraceae bacterium


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Parvibacter caecicola


organism_name: uncultured Coriobacteriaceae bacterium


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Clostridia bacterium


excluded_from_refseq: contaminated; derived from metagenome


excluded_from_refseq: derived from metagenome; genus undefined


organism_name: uncultured Mycoplasmatota bacterium


organism_name: uncultured Porphyromonadaceae bacterium


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly; genome length too small

organism_name: Parabacteroides goldsteinii


organism_name: uncultured Oscillibacter sp.


excluded_from_refseq: contaminated; derived from metagenome; genus undefined


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured bacterium


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Bacteroides acidifaciens


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly; genus undefined

organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Clostridium sp.


organism_name: Muribaculum intestinale


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Pseudoflavonifractor sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Alistipes sp.


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Thomasclavelia cocleata


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Mollicutes bacterium


excluded_from_refseq: contaminated; derived from metagenome; genome length too small

organism_name: Bacteroides thetaiotaomicron


organism_name: uncultured Roseburia sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Lachnospiraceae bacterium


asm_submitter: IHU - Mediterranee Infection

organism_name: Citrobacter sp. Marseille-Q5395


asm_submitter: EMG


organism_name: uncultured Peptococcaceae bacterium


organism_name: uncultured bacterium


organism_name: uncultured Dorea sp.


isolate: Clostridium neonatale 62

organism_name: Clostridium neonatale


organism_name: uncultured Clostridium sp.


organism_name: uncultured Eggerthellaceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Bacteroides stercorirosoris


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Hungatella sp.


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Anaerotruncus sp.


organism_name: uncultured Mycoplasmatota bacterium


isolate: Clostridium neonatale C6


organism_name: uncultured Lachnoclostridium sp.


organism_name: Bifidobacterium pseudolongum


organism_name: uncultured Lachnospiraceae bacterium


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: uncultured Roseburia sp.


organism_name: uncultured Enterorhabdus sp.


organism_name: uncultured Bacillota bacterium


excluded_from_refseq: annotation fails completeness check

isolate: Clostridium neonatale E20

organism_name: Clostridium neonatale


isolate: Clostridium neonatale C51


organism_name: uncultured bacterium


organism_name: uncultured Clostridium sp.


organism_name: Enterococcus faecalis


organism_name: uncultured Alistipes sp.


organism_name: Angelakisella massiliensis


organism_name: uncultured Rickettsiella sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Clostridia bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome


organism_name: uncultured Dorea sp.


organism_name: uncultured Peptococcaceae bacterium


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Hungatella sp.


organism_name: uncultured Muribaculaceae bacterium


organism_name: Bacteroides stercorirosoris


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Mycoplasma sp.


organism_name: uncultured bacterium


organism_name: uncultured Roseburia sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Bacillota bacterium


organism_name: Bacteroides caecimuris


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Angelakisella sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: Anaerotruncus colihominis


organism_name: uncultured Alistipes sp.


organism_name: uncultured Enterorhabdus sp.


isolate: Clostridium neonatale E24

organism_name: Clostridium neonatale


organism_name: uncultured Clostridium sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Eggerthellaceae bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Hungatella sp.


organism_name: uncultured Dorea sp.


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured bacterium


isolate: Clostridium neonatale JD116


isolate: Clostridium neonatale JD68


organism_name: uncultured Prevotella sp.


organism_name: uncultured Roseburia sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Caryophanales bacterium


organism_name: Prevotella histicola


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Lactobacillus sp.


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome


excluded_from_refseq: derived from metagenome


organism_name: Shewanella putrefaciens


organism_name: uncultured Sutterellaceae bacterium


organism_name: Lactobacillus taiwanensis


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined


organism_name: uncultured Enterorhabdus sp.


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured bacterium


organism_name: uncultured Anaerotruncus sp.


organism_name: uncultured Lachnotalea sp.


organism_name: uncultured Muribaculaceae bacterium


isolate: Clostridium neonatale C50

organism_name: Clostridium neonatale


organism_name: uncultured Alistipes sp.


organism_name: Helicobacter hepaticus


organism_name: uncultured Turicibacter sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Mollicutes bacterium


isolate: Clostridium neonatale CC4


excluded_from_refseq: unverified source organism; derived from metagenome


organism_name: uncultured Sutterellaceae bacterium


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Dorea sp.


organism_name: Lactobacillus taiwanensis


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Peptococcaceae bacterium


organism_name: uncultured Hungatella sp.


organism_name: Faecalibaculum rodentium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Eggerthellaceae bacterium


organism_name: uncultured Roseburia sp.


organism_name: uncultured Muribaculaceae bacterium


organism_name: Parabacteroides goldsteinii


organism_name: Parasutterella excrementihominis


organism_name: uncultured Clostridium sp.


organism_name: uncultured bacterium


organism_name: Prevotella pallens


isolate: Clostridium neonatale JD120

organism_name: Clostridium neonatale


organism_name: uncultured Porphyromonadaceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: uncultured Eubacterium sp.


organism_name: Dubosiella newyorkensis


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Dorea sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Hungatella sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Roseburia sp.


isolate: Clostridium neonatale C38


organism_name: Acutalibacter muris


organism_name: uncultured Oscillibacter sp.


organism_name: Akkermansia muciniphila


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Pseudoflavonifractor sp.


organism_name: uncultured bacterium


excluded_from_refseq: unverified source organism; derived from metagenome; genus undefined

organism_name: uncultured Porphyromonadaceae bacterium


excluded_from_refseq: contaminated; derived from metagenome

organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Clostridia bacterium


isolate: Clostridium neonatale C199

organism_name: Clostridium neonatale


isolate: Clostridium neonatale C16


isolate: Clostridium neonatale C191


organism_name: uncultured Enterorhabdus sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Faecalibaculum sp.


organism_name: Mucispirillum schaedleri


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Bacillota bacterium


organism_name: Lactococcus lactis


organism_name: uncultured Angelakisella sp.


organism_name: uncultured Hungatella sp.


organism_name: uncultured bacterium


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Roseburia sp.


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Caryophanales bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Dorea sp.


organism_name: uncultured Streptococcus sp.


isolate: Clostridium neonatale E1

organism_name: Clostridium neonatale


organism_name: uncultured Sutterellaceae bacterium


organism_name: uncultured Flavonifractor sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Mycoplasmatota bacterium


organism_name: uncultured Hungatella sp.


isolate: Clostridium neonatale C55


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured bacterium


organism_name: uncultured Clostridium sp.


isolate: Clostridium neonatale C25


organism_name: uncultured Eggerthellaceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Alistipes sp.


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Roseburia sp.


isolate: Clostridium neonatale C7


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Lachnotalea sp.


isolate: Clostridium neonatale C40

organism_name: Clostridium neonatale


organism_name: uncultured Bacillota bacterium


organism_name: Eubacterium plexicaudatum


organism_name: Bacteroides thetaiotaomicron


isolate: Clostridium neonatale C58


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Mycoplasma sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Bacteroides caecimuris


organism_name: uncultured bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Clostridia bacterium


isolate: Clostridium neonatale E73


isolate: Clostridium neonatale E41


isolate: Clostridium neonatale 269


isolate: Clostridium neonatale E18


isolate: Clostridium neonatale C47


organism_name: uncultured Muribaculaceae bacterium


excluded_from_refseq: contaminated; derived from metagenome; genus undefined


organism_name: uncultured Lachnospiraceae bacterium


isolate: Clostridium neonatale C20


isolate: Clostridium neonatale C8.2


organism_name: uncultured Desulfovibrio sp.


isolate: Clostridium neonatale JD124


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly; genus undefined


isolate: Clostridium neonatale CC5


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Eubacterium sp.


organism_name: Escherichia coli


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Flavonifractor sp.


organism_name: uncultured Angelakisella sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Caryophanales bacterium


isolate: Clostridium neonatale E280

organism_name: Clostridium neonatale


organism_name: uncultured Alistipes sp.


organism_name: Muribaculum intestinale


organism_name: uncultured Mollicutes bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: Eubacterium plexicaudatum


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Dorea sp.


isolate: Clostridium neonatale LF51


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: Lactobacillus intestinalis


organism_name: uncultured Bacillota bacterium


isolate: Clostridium neonatale CC2


isolate: Clostridium neonatale CC1


organism_name: uncultured Roseburia sp.


isolate: Clostridium neonatale C34


organism_name: uncultured Sutterellaceae bacterium


isolate: Clostridium neonatale E263


organism_name: uncultured bacterium


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Lachnotalea sp.


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Akkermansia sp.


organism_name: uncultured Hungatella sp.


organism_name: uncultured Pseudoflavonifractor sp.


organism_name: uncultured Odoribacter sp.


organism_name: Bacteroides acidifaciens


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Alistipes sp.


asm_name: CIRMBP-1236 assembly

excluded_from_refseq: from large multi-isolate project

organism_name: Enterococcus cecorum


isolate: Clostridium neonatale JD104

organism_name: Clostridium neonatale


organism_name: Mucispirillum schaedleri


organism_name: uncultured Desulfovibrio sp.


isolate: Clostridium neonatale JD111


isolate: Clostridium neonatale JD106


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured bacterium


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Hungatella sp.


organism_name: uncultured Dorea sp.


organism_name: Proteus mirabilis


organism_name: uncultured Anaerotruncus sp.


excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Bacteroides sp.


organism_name: Faecalibaculum rodentium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: Escherichia coli


organism_name: uncultured Lachnotalea sp.


isolate: Clostridium neonatale 202

organism_name: Clostridium neonatale


organism_name: uncultured Pseudoflavonifractor sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Akkermansia sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Roseburia sp.


organism_name: Bacteroides fragilis


organism_name: uncultured Alistipes sp.


organism_name: Bacteroides uniformis


excluded_from_refseq: contaminated; derived from metagenome; genome length too small

organism_name: Bacteroides thetaiotaomicron


organism_name: uncultured Phascolarctobacterium sp.


excluded_from_refseq: contaminated; annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Alistipes putredinis


organism_name: Bacteroides xylanisolvens


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Blautia sp.


organism_name: Paraprevotella clara


organism_name: Bacteroides caccae


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome; fragmented assembly

organism_name: Bacteroides caecimuris


organism_name: uncultured Marvinbryantia sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Clostridia bacterium


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome


excluded_from_refseq: derived from metagenome

organism_name: Alistipes finegoldii


organism_name: Faecalibacterium prausnitzii


organism_name: Escherichia coli


organism_name: uncultured Roseburia sp.


organism_name: Akkermansia muciniphila


organism_name: Parabacteroides merdae


excluded_from_refseq: unverified source organism; derived from metagenome


organism_name: Bacteroides ovatus


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Barnesiella sp.


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: uncultured Faecalibacterium sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Parabacteroides distasonis


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Faecalibaculum rodentium


organism_name: Bacteroides uniformis


organism_name: Bacteroides xylanisolvens


organism_name: uncultured Subdoligranulum sp.


organism_name: uncultured Blautia sp.


organism_name: Bacteroides stercoris


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: uncultured bacterium


organism_name: uncultured Bacteroides sp.


excluded_from_refseq: derived from metagenome; genome length too small


organism_name: Bacteroides stercorirosoris


organism_name: Flavonifractor plautii


organism_name: Bacteroides intestinalis


organism_name: Bacteroides eggerthii


organism_name: Bacteroides cellulosilyticus


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Plesiomonas sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: uncultured Clostridia bacterium


organism_name: Lelliottia amnigena


organism_name: uncultured Clostridium sp.


organism_name: Yersinia ruckeri


organism_name: uncultured Prevotellaceae bacterium


organism_name: Lactobacillus amylovorus


organism_name: Megasphaera elsdenii


organism_name: uncultured Dialister sp.


organism_name: uncultured Oribacterium sp.


organism_name: uncultured Solobacterium sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured bacterium


organism_name: Weissella oryzae


organism_name: Phascolarctobacterium succinatutens


organism_name: Aeromonas sobria


organism_name: uncultured Veillonellaceae bacterium


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: Lactococcus garvieae


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Verrucomicrobiota bacterium


organism_name: uncultured Citrobacter sp.


organism_name: Obesumbacterium proteus


organism_name: Enterococcus cecorum


organism_name: uncultured Mycoplasmataceae bacterium


organism_name: Lactobacillus gallinarum


organism_name: Weissella thailandensis


organism_name: uncultured Deefgea sp.


organism_name: Escherichia coli


organism_name: uncultured Paracoccaceae bacterium


organism_name: Cetobacterium somerae


organism_name: uncultured Clostridium sp.


organism_name: Streptococcus pyogenes


organism_name: Lactobacillus johnsonii


organism_name: uncultured Lactobacillus sp.


organism_name: Morganella psychrotolerans


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Shewanella sp.


organism_name: uncultured Nosocomiicoccus sp.


organism_name: Deefgea rivuli


organism_name: uncultured Fusobacteriaceae bacterium


organism_name: [Pasteurella] aerogenes


organism_name: uncultured Cetobacterium sp.


organism_name: Lactobacillus crispatus


organism_name: Aeromonas sobria


organism_name: uncultured bacterium


organism_name: Lactococcus lactis


organism_name: Carnobacterium maltaromaticum


organism_name: Pseudolactococcus raffinolactis


organism_name: Streptococcus uberis


organism_name: Kluyvera intermedia


organism_name: uncultured Prevotella sp.


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Corynebacterium sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Rikenellaceae bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Allobaculum sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Odoribacter sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured bacterium


organism_name: uncultured Sutterellaceae bacterium


organism_name: Mucispirillum schaedleri


organism_name: uncultured Alistipes sp.


organism_name: uncultured Desulfovibrio sp.


organism_name: Parabacteroides distasonis


organism_name: Helicobacter typhlonius


organism_name: uncultured Caryophanales bacterium


organism_name: uncultured Bacteroidales bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: uncultured Helicobacter sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: Lactococcus lactis


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Bacillota bacterium


organism_name: uncultured bacterium


organism_name: uncultured Odoribacter sp.


organism_name: uncultured Azospirillum sp.


organism_name: Faecalibaculum rodentium


organism_name: uncultured Paraprevotella sp.


organism_name: uncultured Mycoplasmataceae bacterium


organism_name: Helicobacter apodemus


organism_name: Bifidobacterium pseudolongum


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Mollicutes bacterium


organism_name: uncultured Peptococcaceae bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: Parabacteroides goldsteinii


organism_name: uncultured Clostridia bacterium


organism_name: Bacteroides acidifaciens


organism_name: uncultured cyanobacterium


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Candidatus Melainabacteria bacterium


organism_name: uncultured Akkermansia sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Mycoplasma sp.


organism_name: uncultured Roseburia sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured bacterium


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Rikenellaceae bacterium


organism_name: uncultured Bacillota bacterium


excluded_from_refseq: contaminated; derived from metagenome; genus undefined


organism_name: Plesiomonas shigelloides


organism_name: uncultured Negativicutes bacterium


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Cetobacterium sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: Klebsiella quasipneumoniae


excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Citrobacter sp.


organism_name: Cetobacterium somerae


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly; genus undefined


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured bacterium


organism_name: Escherichia coli


organism_name: uncultured Hungatella sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Anaerotruncus sp.


organism_name: uncultured Dorea sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Bacillota bacterium


organism_name: Muribaculum intestinale


organism_name: Turicimonas muris


organism_name: Blautia producta


organism_name: Lactobacillus taiwanensis


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured bacterium


organism_name: uncultured Mycoplasmatota bacterium


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Clostridium sp.


organism_name: Bacteroides acidifaciens


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Coriobacteriaceae bacterium


organism_name: Thomasclavelia cocleata


organism_name: uncultured Bacillota bacterium


asm_name: Salinibacter ESSP73

asm_submitter: IMEDEA

organism_name: Salinibacter sp.


asm_name: Salinibacter ESAV87


asm_name: Salinibacter ESCM71


asm_name: Salinibacter ESSP12


asm_name: Salinibacter USCM88


asm_name: Salinibacter NZ140

organism_name: Salinibacter grassmerensis


asm_name: Salinibacter ESAV49

organism_name: Salinibacter pepae


asm_name: Salinibacter USCM187


asm_name: Salinibacter USCM46


asm_name: Salinibacter ESSP84


asm_name: Salinibacter USCM25


asm_submitter: European Institute of the Sea (IUEM) - France

organism_name: uncultured beta proteobacterium


organism_name: uncultured Polaromonas sp.


organism_name: uncultured Bacteroidota bacterium


organism_name: uncultured Bryobacteraceae bacterium


organism_name: uncultured Nitrospirota bacterium


organism_name: uncultured Nitrospinota bacterium


organism_name: uncultured bacterium


organism_name: uncultured Kocuria sp.


organism_name: uncultured Candidatus Desulforudis sp.


organism_name: uncultured Coxiellaceae bacterium


organism_name: uncultured Ignavibacteria bacterium


organism_name: uncultured Gallionella sp.


organism_name: uncultured Parcubacteria group bacterium


organism_name: uncultured Comamonadaceae bacterium


organism_name: Methanobacteriota archaeon


organism_name: uncultured Roseococcus sp.


organism_name: uncultured Caulobacter sp.


organism_name: uncultured Actinomycetes bacterium


organism_name: uncultured Microbacteriaceae bacterium


organism_name: uncultured Paracoccus sp.


excluded_from_refseq: RefSeq annotation failed; annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Aquabacterium sp.


organism_name: uncultured Parvibaculum sp.


organism_name: uncultured Thermus sp.


organism_name: uncultured Rhodoferax sp.


organism_name: uncultured Opitutaceae bacterium


organism_name: uncultured Nitrospirota bacterium


organism_name: uncultured Candidatus Desulforudis sp.


organism_name: uncultured Cyclobacterium sp.


organism_name: uncultured Burkholderiales bacterium


organism_name: uncultured Chitinophagaceae bacterium


organism_name: Candidatus Fraserbacteria bacterium


organism_name: uncultured Chloroflexota bacterium


organism_name: uncultured Nitrospiraceae bacterium


organism_name: uncultured Caulobacteraceae bacterium


organism_name: uncultured bacterium


organism_name: uncultured Bacillus sp.


organism_name: uncultured delta proteobacterium


organism_name: uncultured Ignavibacteriota bacterium


organism_name: uncultured Sphingomonas sp.


organism_name: uncultured Gemmatimonadota bacterium


organism_name: uncultured Bacteroidota bacterium


organism_name: uncultured Gallionella sp.


organism_name: uncultured Phycisphaerae bacterium


organism_name: uncultured Pseudomonadota bacterium


organism_name: uncultured Planctomycetota bacterium


organism_name: uncultured Novosphingobium sp.


organism_name: uncultured Prolixibacteraceae bacterium


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Chromatiaceae bacterium


organism_name: uncultured Actinomycetes bacterium


organism_name: uncultured Anaerolineae bacterium


organism_name: uncultured Elusimicrobia bacterium


organism_name: uncultured Caulobacteraceae bacterium


organism_name: uncultured Rhodocyclaceae bacterium


organism_name: uncultured Pseudomonas sp.


organism_name: uncultured Pirellulaceae bacterium


organism_name: uncultured Gallionellaceae bacterium


organism_name: uncultured Omnitrophica bacterium


organism_name: uncultured Sinobacteraceae bacterium


organism_name: uncultured Candidatus Melainabacteria bacterium


organism_name: uncultured Candidatus Peregrinibacteria bacterium


organism_name: uncultured Parcubacteria group bacterium


organism_name: uncultured Nitrospirales bacterium


organism_name: uncultured Ignavibacteriota bacterium


organism_name: uncultured Nitrospira sp.


organism_name: uncultured Nitrosomonadales bacterium


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Moraxellaceae bacterium


organism_name: uncultured Sulfuricella sp.


organism_name: uncultured Pseudomonadota bacterium


organism_name: uncultured Actinomycetes bacterium


organism_name: uncultured Ignavibacteria bacterium


organism_name: uncultured Deinococcota bacterium


organism_name: uncultured bacterium


organism_name: uncultured Acidovorax sp.


excluded_from_refseq: contaminated

organism_name: Candidatus Minimicrobia sp. IHU4


organism_name: Lactobacillus gasseri


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Gardnerella sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Gardnerella vaginalis


organism_name: uncultured Peptoniphilus sp.


organism_name: Peptostreptococcus anaerobius


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Dialister sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Roseburia sp.


organism_name: uncultured Clostridium sp.


organism_name: Atopobium minutum


organism_name: uncultured Coriobacteriales bacterium


organism_name: Slackia exigua


organism_name: uncultured Turicibacter sp.


organism_name: uncultured Hungatella sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: Lactobacillus iners


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Bacteroides acidifaciens


organism_name: Lactobacillus crispatus


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Gordonibacter sp.


organism_name: Atopobium deltae


organism_name: uncultured bacterium


organism_name: uncultured Arcanobacterium sp.


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Bacillota bacterium


organism_name: Prevotella disiens


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Mycoplasmatota bacterium


organism_name: uncultured Angelakisella sp.


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: Metamycoplasma hominis


organism_name: uncultured Eubacterium sp.


organism_name: Streptococcus anginosus


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: Bacteroides acidifaciens


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Lactobacillus johnsonii


organism_name: Acutalibacter muris


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Veillonellaceae bacterium


organism_name: Anaerococcus tetradius


organism_name: uncultured Bulleidia sp.


organism_name: Prevotella ihumii


organism_name: uncultured Peptostreptococcus sp.


organism_name: Mobiluncus curtisii


organism_name: uncultured Atopobium sp.


organism_name: Gardnerella vaginalis


organism_name: uncultured bacterium


organism_name: uncultured Clostridium sp.


organism_name: Mageeibacillus indolicus


organism_name: uncultured Prevotella sp.


organism_name: Prevotella amnii


organism_name: Parasutterella excrementihominis


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Lactobacillus iners


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Alistipes sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Mobiluncus sp.


organism_name: Bifidobacterium pseudolongum


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Roseburia sp.


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Hungatella sp.


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Gardnerella sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Peptococcaceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Bacteroides sp.


organism_name: Akkermansia muciniphila


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Roseburia sp.


organism_name: uncultured Lactobacillus sp.


organism_name: Acutalibacter muris


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Alistipes sp.


organism_name: Parabacteroides distasonis


organism_name: Bacteroides caecimuris


organism_name: uncultured Mycoplasma sp.


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Hungatella sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Anaerotruncus sp.


organism_name: uncultured bacterium


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Roseburia sp.


excluded_from_refseq: unverified source organism; derived from metagenome; genus undefined


excluded_from_refseq: derived from metagenome

organism_name: uncultured Dorea sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Mollicutes bacterium


organism_name: Lactobacillus intestinalis


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Oscillibacter sp.


organism_name: Mucispirillum schaedleri


organism_name: Staphylococcus epidermidis


organism_name: Peptococcus niger


organism_name: Lactobacillus johnsonii


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: Acutalibacter muris


organism_name: uncultured Clostridia bacterium


excluded_from_refseq: unverified source organism; derived from metagenome


organism_name: uncultured bacterium


organism_name: uncultured Eubacterium sp.


organism_name: Muribaculum intestinale


organism_name: uncultured Clostridium sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: Eubacterium plexicaudatum


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Angelakisella sp.


organism_name: Gardnerella vaginalis


organism_name: Prevotella bivia


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Roseburia sp.


organism_name: Aerococcus christensenii


organism_name: uncultured Rickettsiales bacterium


organism_name: uncultured Caryophanales bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Bacillota bacterium


organism_name: uncultured bacterium


organism_name: Faecalibaculum rodentium


organism_name: Lactobacillus jensenii


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: Enterococcus faecalis


organism_name: Peptoniphilus harei


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Clostridium sp.


organism_name: Veillonella montpellierensis


organism_name: Eubacterium plexicaudatum


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Francisella sp.


organism_name: Dialister micraerophilus


organism_name: uncultured Lactobacillus sp.


organism_name: Gardnerella vaginalis


organism_name: uncultured Alistipes sp.


excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small


organism_name: uncultured Peptococcaceae bacterium


organism_name: Mobiluncus mulieris


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: uncultured Gardnerella sp.


organism_name: uncultured Campylobacter sp.


organism_name: Lactobacillus jensenii


organism_name: Peptoniphilus vaginalis


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured bacterium


organism_name: uncultured Dorea sp.


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Atopobium sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Eubacterium sp.


organism_name: Actinomyces culturomici


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome

organism_name: uncultured Lactobacillus sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: uncultured Porphyromonadaceae bacterium


organism_name: Peptoniphilus lacrimalis


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Candidatus Neoarthromitus sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Gardnerella vaginalis


organism_name: Gemelliphila asaccharolytica


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Clostridium sp.


annotation_name: Annotation submitted by center for biotechnology (cebitec), bielefeld university

organism_name: Pseudomonas sp. MM227


organism_name: uncultured Roseburia sp.


organism_name: uncultured Candidatus Melainabacteria bacterium


annotation_provider: center for biotechnology (cebitec), bielefeld university

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

isolate: Pseudomonas MM223 assembly

organism_name: Pseudomonas sp. MM223


asm_submitter: center for biotechnology (cebitec), bielefeld university

organism_name: Pseudarthrobacter sp. MM222


organism_name: Rheinheimera sp. MM224


asm_submitter: CARDIFF UNIVERSITY

organism_name: Burkholderia multivorans


organism_name: Pseudomonas sp. MM221


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Capnocytophaga granulosa


organism_name: Prevotella multiformis


organism_name: Capnocytophaga leadbetteri


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: uncultured Neisseria sp.


organism_name: Segatella oulorum


organism_name: Segatella baroniae


organism_name: uncultured Prevotella sp.


organism_name: Centipeda noxia


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Bacteroidota bacterium


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Prevotella nigrescens


organism_name: Veillonella parvula


organism_name: uncultured Treponema sp.


organism_name: uncultured Abiotrophia sp.


organism_name: [Eubacterium] infirmum


organism_name: uncultured Ottowia sp.


organism_name: Capnocytophaga gingivalis


organism_name: uncultured Selenomonas sp.


asm_submitter: AMSTERDAM UMC

organism_name: Streptococcus suis


organism_name: Capnocytophaga sputigena


organism_name: Alloprevotella tannerae


organism_name: Prevotella intermedia


organism_name: uncultured Porphyromonas sp.


organism_name: Corynebacterium mustelae


organism_name: Capnocytophaga leadbetteri


organism_name: Aggregatibacter segnis


organism_name: uncultured Alloprevotella sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: Prevotella melaninogenica


organism_name: uncultured Methanomethylophilus sp.


organism_name: uncultured Tannerella sp.


organism_name: Selenomonas sputigena


organism_name: uncultured Olsenella sp.


organism_name: Megasphaera geminata


organism_name: uncultured Cardiobacterium sp.


organism_name: Neisseria elongata


organism_name: uncultured Prevotella sp.


organism_name: uncultured Selenomonas sp.


organism_name: Prevotella pallens


organism_name: Streptococcus sinensis


organism_name: Streptococcus suis


organism_name: uncultured Candidatus Altimarinota bacterium


organism_name: uncultured Neisseria sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Porphyromonas sp.


organism_name: Capnocytophaga leadbetteri


organism_name: Lautropia mirabilis


organism_name: Porphyromonas endodontalis


organism_name: Porphyromonas gingivalis


organism_name: uncultured Propionibacterium sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: Anaerotruncus colihominis


organism_name: uncultured Clostridia bacterium


excluded_from_refseq: contaminated; derived from metagenome; genus undefined

organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Bacillota bacterium


excluded_from_refseq: contaminated; derived from metagenome

organism_name: uncultured Oscillibacter sp.


organism_name: Bacteroides thetaiotaomicron


organism_name: Streptococcus suis


organism_name: Angelakisella massiliensis


organism_name: uncultured bacterium


organism_name: Lactobacillus johnsonii


organism_name: Dubosiella newyorkensis


organism_name: uncultured Dorea sp.


organism_name: uncultured Enterorhabdus sp.


organism_name: uncultured Coriobacteriaceae bacterium


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Roseburia sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Flavonifractor sp.


organism_name: uncultured Clostridia bacterium


organism_name: Lactococcus lactis


organism_name: Romboutsia timonensis


organism_name: Akkermansia muciniphila


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Thomasclavelia cocleata


excluded_from_refseq: contaminated; derived from metagenome; genome length too small

organism_name: Parasutterella excrementihominis


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: uncultured Bacillota bacterium


organism_name: uncultured Anaerotruncus sp.


organism_name: uncultured bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Lactobacillus sp.


excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Alistipes sp.


annotation_name: Annotation submitted by Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)

organism_name: Klebsiella pneumoniae


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Prevotella sp.


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Treponema sp.


organism_name: Lachnospira pectinoschiza


organism_name: uncultured Caryophanales bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Negativicutes bacterium


organism_name: uncultured Selenomonas sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Roseburia sp.


annotation_provider: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


organism_name: uncultured Olsenella sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Ruminococcus sp.


excluded_from_refseq: derived from metagenome

organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured cyanobacterium


organism_name: Succinatimonas hippei


organism_name: Butyrivibrio hungatei


organism_name: Segatella bryantii


organism_name: uncultured Elusimicrobia bacterium


organism_name: Butyrivibrio proteoclasticus


organism_name: uncultured Methanobrevibacter sp.


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Clostridia bacterium


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly; genus undefined


organism_name: uncultured Fibrobacter sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Prevotella sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Ruminococcus flavefaciens


organism_name: uncultured Treponema sp.


organism_name: uncultured Elusimicrobium sp.


organism_name: uncultured Selenomonadales bacterium


excluded_from_refseq: unverified source organism; derived from metagenome; genus undefined

organism_name: uncultured Pseudomonadota bacterium


organism_name: uncultured Mycoplasmataceae bacterium


organism_name: uncultured Mycoplasmatota bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Caryophanales bacterium


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Oribacterium sp.


organism_name: uncultured bacterium


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Roseburia sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Treponema sp.


organism_name: uncultured Verrucomicrobiota bacterium


organism_name: uncultured Prevotella sp.


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Methanobrevibacter sp.


organism_name: uncultured Selenomonadales bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Fibrobacter sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Mollicutes bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Mycoplasmatota bacterium


organism_name: Bifidobacterium pseudolongum


organism_name: uncultured Bacteroidales bacterium


organism_name: Xylanibacter ruminicola


organism_name: uncultured Pseudomonadota bacterium


organism_name: uncultured Spirochaetaceae bacterium


organism_name: uncultured Treponema sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Ruminococcus flavefaciens


organism_name: uncultured Anaerovibrio sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Methanomicrobiales archaeon


organism_name: uncultured Selenomonadales bacterium


organism_name: uncultured Prevotellaceae bacterium


organism_name: Butyrivibrio fibrisolvens


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Verrucomicrobiota bacterium


organism_name: uncultured Selenomonas sp.


organism_name: uncultured Caryophanales bacterium


organism_name: uncultured Bacteroidota bacterium


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Treponema sp.


organism_name: uncultured Fibrobacter sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Prevotella sp.


organism_name: uncultured Pseudomonadota bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Rickettsiales bacterium


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured cyanobacterium


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Selenomonadaceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Selenomonadales bacterium


organism_name: uncultured Mycoplasmatota bacterium


organism_name: uncultured bacterium


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Caryophanales bacterium


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Treponema sp.


organism_name: uncultured Butyrivibrio sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Verrucomicrobiota bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Methanomicrobiales archaeon


organism_name: uncultured Selenomonadales bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Methanobrevibacter sp.


organism_name: Methanobrevibacter millerae


organism_name: uncultured bacterium


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Bacteroidota bacterium


organism_name: uncultured Elusimicrobia bacterium


organism_name: uncultured Butyrivibrio sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Fretibacterium sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Treponema sp.


organism_name: uncultured Caryophanales bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Prevotella sp.


organism_name: uncultured bacterium


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Pseudomonadota bacterium


organism_name: uncultured Methanobrevibacter sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Lentisphaerota bacterium


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Bacteroidota bacterium


organism_name: uncultured Butyrivibrio sp.


organism_name: Pseudoselenomonas ruminantium


organism_name: uncultured Ruminobacter sp.


organism_name: uncultured Elusimicrobium sp.


organism_name: uncultured Mycoplasmataceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Atopobiaceae bacterium


organism_name: uncultured Selenomonadales bacterium


organism_name: uncultured Treponema sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured bacterium


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: Methanobrevibacter thaueri


organism_name: uncultured Verrucomicrobiota bacterium


organism_name: uncultured Lachnospira sp.


organism_name: uncultured Lentisphaerota bacterium


organism_name: uncultured Caryophanales bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Fibrobacterales bacterium


organism_name: Ruminococcus flavefaciens


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Butyrivibrio sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Elusimicrobium sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Lentisphaeria bacterium


organism_name: uncultured Prevotella sp.


organism_name: uncultured Treponema sp.


organism_name: uncultured Mycoplasmataceae bacterium


organism_name: Hominimerdicola alba


organism_name: uncultured bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Selenomonadaceae bacterium


organism_name: uncultured Hungatella sp.


organism_name: uncultured Methanobrevibacter sp.


organism_name: uncultured Pseudoflavonifractor sp.


organism_name: uncultured Dorea sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Enterorhabdus sp.


organism_name: uncultured Eggerthellaceae bacterium


organism_name: uncultured Fibrobacter sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Anaerotruncus sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Sutterellaceae bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Roseburia sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Helicobacter sp.


organism_name: Muribaculum intestinale


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Dorea sp.


organism_name: uncultured Coriobacteriaceae bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Mucispirillum sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Muribaculum sp.


organism_name: Helicobacter apodemus


organism_name: uncultured Alistipes sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Prevotella sp.


organism_name: Lactobacillus johnsonii


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Lactobacillus sp.


organism_name: Lactobacillus intestinalis


organism_name: uncultured Bacillota bacterium


organism_name: uncultured bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Akkermansia sp.


organism_name: Helicobacter hepaticus


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Faecalibaculum sp.


organism_name: uncultured Rikenellaceae bacterium


organism_name: uncultured Hungatella sp.


organism_name: uncultured Pseudoflavonifractor sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Paraprevotella sp.


organism_name: Bifidobacterium pseudolongum


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Pseudomonadota bacterium


organism_name: Turicimonas muris


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: uncultured Turicibacter sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Bacteroidales bacterium


organism_name: Bacteroides caecimuris


organism_name: uncultured Enterorhabdus sp.


organism_name: Bifidobacterium animalis


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured bacterium


organism_name: uncultured Rikenellaceae bacterium


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Butyricicoccus sp.


organism_name: Parabacteroides distasonis


organism_name: uncultured Lactococcus sp.


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Dorea sp.


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Dubosiella newyorkensis


organism_name: Bacteroides acidifaciens


organism_name: uncultured Mycoplasmataceae bacterium


organism_name: uncultured Roseburia sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Lactobacillus intestinalis


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Hungatella sp.


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Odoribacter sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured bacterium


organism_name: Helicobacter typhlonius


organism_name: uncultured Alistipes sp.


organism_name: Eubacterium plexicaudatum


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Angelakisella sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Muribaculaceae bacterium


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Bacteroides acidifaciens


organism_name: uncultured Peptococcaceae bacterium


organism_name: uncultured Mollicutes bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured bacterium


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Bacillota bacterium


organism_name: Mucispirillum schaedleri


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Dorea sp.


organism_name: Parabacteroides distasonis


organism_name: uncultured Alistipes sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Akkermansia sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: Angelakisella massiliensis