organism_name: uncultured Rikenella sp.


asm_submitter: Kennedy Institute of Rheumatology, University of Oxford

assembly_level: Contig

assembly_type: haploid

excluded_from_refseq: derived from metagenome; genus undefined

genome_rep: Full

group: bacteria

organism_name: uncultured Lachnospiraceae bacterium

release_type: Major

version_status: latest


asm_submitter: Beijing Genome Institute

assembly_level: Scaffold


asm_submitter: Shanghai Jiao Tong University Affiliated Six People's Hospital


asm_submitter: University of Florida

organism_name: uncultured Candidatus Melainabacteria bacterium


asm_submitter: Insytitute of microbiology and epidemiology

organism_name: uncultured Candidatus Saccharibacteria bacterium


excluded_from_refseq: derived from metagenome

organism_name: uncultured Angelakisella sp.


excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Acetatifactor sp.

paired_asm_comp: identical


organism_name: uncultured Bacilli bacterium


organism_name: uncultured Christensenella sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Vampirovibrio sp.


organism_name: uncultured Oscillibacter sp.


asm_submitter: Jiangnan University

organism_name: uncultured Bacteroides sp.


organism_name: uncultured Eggerthellaceae bacterium


organism_name: uncultured Flavobacteriales bacterium


organism_name: uncultured Brachyspira sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Muribaculaceae bacterium


asm_submitter: Technical University Munich


organism_name: uncultured Dorea sp.


organism_name: uncultured Hungatella sp.


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Lachnospiraceae bacterium


asm_submitter: EMG

organism_name: uncultured Halomonas sp.


asm_submitter: Brown University


organism_name: uncultured Erythrobacteraceae bacterium


organism_name: uncultured Duncaniella sp.


organism_name: uncultured Pelagibacteraceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


asm_submitter: dmf

excluded_from_refseq: from large multi-isolate project

organism_name: Pseudomonas aeruginosa


annotation_name: Annotation submitted by GENGS-CBMSO

annotation_provider: GENGS-CBMSO

asm_name: BACSP

asm_submitter: GENGS-CBMSO

organism_name: Bacillus sp. T2.9-1


asm_name: MICABA

organism_name: Microbacterium sp. T2.11-28


asm_name: CITSP

organism_name: Citrobacter sp. T1.2D-1


excluded_from_refseq: from large multi-isolate project; genome length too small


asm_name: ANOBCDAF

organism_name: Pleomorphomonas sp. T1.2MG-36


asm_name: CCAJJPOJ

organism_name: Lelliottia sp. T2.26D-8


excluded_from_refseq: contaminated; from large multi-isolate project


asm_name: LGHFLMMC

organism_name: Pseudomonas sp. T2.1D-1.1


asm_name: HIDPHFAB

organism_name: Nocardioides sp. T2.26MG-1


asm_name: AES

organism_name: Aestuariimicrobium sp. T2.26MG-19.2B


asm_submitter: INRAE

organism_name: Streptococcus thermophilus


asm_submitter: Dr. Sarita Mohapatra, Department of Microbiology, All Indian Institute of Medical Sciences

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

isolate: isolate

organism_name: Escherichia coli


asm_submitter: janssen pharmaceutica

isolate: Stool culture

organism_name: Shigella sonnei


asm_submitter: PROIMI


asm_submitter: WELLCOME SANGER INSTITUTE


asm_submitter: Quadram Institute Bioscience


asm_submitter: IHU - Mediterranee Infection

organism_name: Shigella flexneri


asm_submitter: University of Liverpool


asm_submitter: Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen


asm_submitter: tissue typing laboratory


asm_submitter: Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen Department of Clinical Biochemistry, Rigshospitalet, University of Copenhagen Department of Clinical Biochemistry, Bispebjerg & Frederiksberg Hospitals, University of Copenhagen


asm_submitter: Philipps-Universitat Marburg Center for Synthetic Microbiology (Synmikro) Becker lab


asm_submitter: THE ROSLIN INSTITUTE


asm_submitter: UNIVERSITY OF COLORADO DENVER, SCHOOL OF MEDICINE


asm_submitter: Institut Pasteur


asm_submitter: University of Bari "Aldo Moro"


asm_submitter: University of Helsinki


asm_submitter: Wallenberg Center for Molecular Medicine (WCMM) Department of Biomedical and Clinical Sciences (BKV) Division of Molecular Medicine and Virology (MMV) Faculty of Medicine and Health Sciences, Linkoping University, Linkoping, Sweden


asm_submitter: computational biology


asm_submitter: biology centre ascr, v.v.i.


asm_submitter: UNIVERSITY OF HELSINKI


asm_submitter: YANGZHOU UNIVERSITY


asm_submitter: WELLCOME SANGER INSTITUTE


excluded_from_refseq: annotation fails completeness check


asm_submitter: Genoscope


asm_submitter: Equine Research Centre


asm_submitter: Internal Medicine C, University Medicine Greifswald


asm_submitter: Anthony Nolan


asm_submitter: Rostock University Medical Center


asm_submitter: Nantes Universite, CHU Nantes, CNRS, INSERM, l’institut du thorax, F-44000 Nantes, France


asm_submitter: Unimedizin Greifswald


asm_submitter: South Australian Health and Medical Research Institute


asm_submitter: GFZ German Research Centre for Geosciences


asm_submitter: UNIVERSITY COLLEGE DUBLIN


asm_submitter: Georgia State University


asm_submitter: Technion, Israel


asm_submitter: Macalester College


asm_submitter: Wallenberg Center for Molecular Medicine (WCMM) Department of Biomedical and Clinical Sciences (BKV) Division of Molecular Medicine and Virology (MMV) Faculty of Medicine and Health Sciences, Linkoping University, Linkoping, Sweden


asm_submitter: Weizmann Institute of Science


asm_submitter: EMG


asm_submitter: Institute of Clinical Molecular Biology (IKMB)


asm_submitter: IHU - Mediterranee Infection


asm_submitter: WELLCOME SANGER INSTITUTE


asm_submitter: institute of technology carlow, ireland


asm_submitter: ETH Zurich, DBSSE


asm_submitter: yale university


asm_submitter: GENENTECH


asm_submitter: IMPERIAL COLLEGE LONDON


asm_submitter: Ghent University Department of Pharmaceutical Sciences Laboratory of Pharmaceutical Microbiology


asm_submitter: University of Oslo


asm_submitter: AUSTRALIAN NATIONAL UNIVERSITY


asm_submitter: Population Genetics and Bioinformatics


asm_submitter: IRB Barcelona / BIST


asm_submitter: biological and chemical research centre, university of warsaw


asm_submitter: Leibniz Institute of Plant Genetics and Crop Plant Research


asm_submitter: Wellcome Sanger Institute


asm_submitter: EMG


asm_submitter: CNRS UMR 5288


asm_submitter: Institute of Pharmacology, Heidelberg University, Heidelberg Ernst-Strungmann-Institute, Frankfurt am Main, Germany


asm_submitter: CENTER FOR BIOTECHNOLOGY, BIELEFELD UNIVERSITY


asm_submitter: Zhongkai University of Agriculture and Engineering


asm_submitter: WELLCOME SANGER INSTITUTE


asm_submitter: The University of Sheffield


asm_submitter: ETH Zurich, DBSSE


asm_submitter: NATIONAL UNIVERSITY OF IRELAND, GALWAY


asm_submitter: Genoscope


asm_submitter: Korea Research Institute of Standards and Science


asm_submitter: School of Medicine, Cardiff University, UK


asm_submitter: Ghent University Department of Pharmaceutical Sciences Laboratory of Pharmaceutical Microbiology


asm_submitter: isciii


asm_submitter: Instituto de Medicina Molecular Joao Lobo Antunes


asm_submitter: Wallenberg Center for Molecular Medicine (WCMM) Department of Biomedical and Clinical Sciences (BKV) Division of Molecular Medicine and Virology (MMV) Faculty of Medicine and Health Sciences, Linkoping University, Linkoping, Sweden


asm_submitter: UNIVERSIDAD DE JAEN


asm_submitter: Institut Pasteur


asm_submitter: north south university


asm_submitter: UNIVERSITY COLLEGE LONDON


asm_submitter: EMG


asm_submitter: University of Helsinki


asm_submitter: RADBOUD UNIVERSITY, Department Microbiology


asm_submitter: INDIAN INSTITUTE OF SCIENCE EDUCATION AND RESEARCH, BHOPAL


asm_submitter: ETH Zurich


asm_submitter: Centre de recherche CHU Sainte-Justine


asm_submitter: WELLCOME SANGER INSTITUTE


asm_submitter: UNIVERSITY COLLEGE DUBLIN


asm_submitter: WAGENINGEN UNIVERSITY


asm_submitter: Zouves Foundation for Reproductive Medicine


asm_submitter: columbia university irving medical center


asm_submitter: VRIJE UNIVERSITEIT BRUSSEL


asm_submitter: St George's University of London


asm_submitter: The University of Western Australia; Ear Science Institute Australia


asm_submitter: minzu university of china


asm_submitter: Ragimbeau


asm_submitter: university of helsinki, institute of biotechnology


asm_submitter: uantwerpen


asm_submitter: Novo Nordisk Foundation Center for Stem Cell Biology (DanStem), University of Copenhagen


asm_submitter: ETH Zurich, DBSSE


asm_submitter: HKU


asm_submitter: University of Antwerpen


asm_submitter: EMG


asm_submitter: UNIVERSITY OF FREIBURG MEDICAL CENTER


asm_submitter: UNIVERSITY COLLEGE LONDON


asm_submitter: John Innes Centre


asm_submitter: IHU - Mediterranee Infection


asm_submitter: Zhongkai University of Agriculture and Engineering


asm_submitter: caesarhhh


asm_submitter: University of Oslo

isolate: Blood culture


asm_submitter: Centre for Translational Microbiome Research (CTMR)


asm_submitter: University of Helsinki


asm_submitter: Computational Biology Unit


asm_submitter: Technical University of Denmark


asm_submitter: Wageningen University and Research

isolate: Urine culture


asm_submitter: National Taiwan University Hospital


asm_submitter: Guangzhou Women and Children's Medical Center


asm_submitter: ETH Zurich, DBSSE


asm_submitter: haikou


asm_submitter: WELLCOME SANGER INSTITUTE


asm_submitter: Institute of Life Sciences


asm_submitter: The University of Texas MD Anderson Cancer Center Department of Lymphoma & Myeloma


asm_submitter: Nottingham Trent University


asm_submitter: Department of Biosciences - Universita degli Studi di Milano


asm_submitter: Stockholm University


asm_submitter: university of liverpool, institute of infection, veterinary and ecological sciences


asm_submitter: dmf


annotation_name: Annotation submitted by inrae de tours

annotation_provider: inrae de tours

asm_submitter: inrae de tours

infraspecific_name: strain=LA5 775

isolate: Isolate LA5_775

organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


annotation_name: Annotation submitted by ncipd

annotation_provider: ncipd

asm_submitter: ncipd

assembly_level: Complete Genome

organism_name: Staphylococcus aureus


annotation_name: Annotation submitted by University of Cambridge

annotation_provider: University of Cambridge

asm_submitter: University of Cambridge

organism_name: Candidatus Ornithobacterium hominis

refseq_category: reference genome

relation_to_type_material: assembly from type material


asm_submitter: IHU - Mediterranee Infection

organism_name: Butyricicoccus sp. Marseille-Q5471


organism_name: Dysgonomonas sp. Marseille-Q5470


organism_name: Parablautia sp. Marseille-Q6255


organism_name: Lentilactobacillus sp. Marseille-Q4993


asm_submitter: EMG

organism_name: Prevotella histicola


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Veillonella sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Streptococcus parasanguinis


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Isoptericola variabilis


organism_name: uncultured Neisseria sp.


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: uncultured Selenomonas sp.


organism_name: uncultured Prevotella sp.


organism_name: Fusobacterium periodonticum


organism_name: uncultured Actinomyces sp.


organism_name: uncultured Isoptericola sp.


organism_name: Sanguibacter keddieii


organism_name: Megasphaera micronuciformis


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Rothia sp.


organism_name: Haemophilus parainfluenzae


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Rothia mucilaginosa


organism_name: Streptococcus salivarius


organism_name: Prevotella jejuni


asm_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

organism_name: Clostridium perfringens


excluded_from_refseq: unverified source organism; genus undefined

organism_name: bacterium NLAE-zl-P10


isolate: CWC 48


isolate: NCDC PS49


isolate: CP PB-1


asm_submitter: UNIVERSITY OF GLASGOW

organism_name: Streptococcus agalactiae


asm_submitter: UNIVERSITY OF CAMBRIDGE

organism_name: Helicobacter hepaticus


annotation_name: Annotation submitted by university of science and technology of hanoi (usth)

asm_name: EAV_NNN508 complete genome sequence

organism_name: Elizabethkingia anophelis


organism_name: Escherichia coli


asm_submitter: Institut de Biologie de Ecole normale superieure (IBENS), France

organism_name: uncultured Planktomarina sp.


asm_submitter: Naseer

excluded_from_refseq: genus undefined

isolate: Muribaculaceae sp. Strain X

organism_name: Muribaculaceae bacterium


asm_submitter: department of clinical science, university of bergen

organism_name: Salmonella enterica subsp. enterica serovar Typhi


organism_name: Pseudomonas aeruginosa


asm_submitter: Quadram Institute Bioscience


asm_submitter: GOTHENBURG UNIVERISITY

organism_name: Faecalibacterium prausnitzii


organism_name: Desulfovibrio piger


asm_submitter: Nanjing university

organism_name: uncultured Bacteroidales bacterium


asm_submitter: National Cancer Institute - NIH

organism_name: uncultured Clostridia bacterium


asm_submitter: Cincinnati Childrens Hospital

organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Lachnospiraceae bacterium


asm_submitter: University of Florida

organism_name: uncultured Rikenellaceae bacterium


asm_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


organism_name: uncultured Bacilli bacterium


organism_name: Akkermansia muciniphila


asm_submitter: Gladstone Institutes

organism_name: uncultured Muribaculaceae bacterium


asm_submitter: Kennedy Institute of Rheumatology, University of Oxford


organism_name: uncultured Acetatifactor sp.


organism_name: uncultured Oscillibacter sp.


asm_submitter: University of Bern


asm_submitter: University of Vienna

organism_name: uncultured Clostridium sp.


organism_name: uncultured Parvibacter sp.


organism_name: Lactobacillus acidophilus


organism_name: uncultured Erysipelotrichales bacterium


organism_name: uncultured Eubacterium sp.


asm_submitter: Alkek Center for Metagenomics and Microbiome Research

organism_name: Ligilactobacillus agilis


asm_submitter: Insytitute of microbiology and epidemiology

organism_name: uncultured Dorea sp.


organism_name: Bifidobacterium longum


organism_name: uncultured Rickettsiales bacterium


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Alistipes sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Christensenella sp.


organism_name: uncultured Staphylococcus sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Eggerthellaceae bacterium


asm_submitter: NIAID Bioinformatics and Computational Biosciences Branch

organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Candidatus Melainabacteria bacterium


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: Klebsiella michiganensis


organism_name: uncultured Dorea sp.


organism_name: uncultured Angelakisella sp.


asm_submitter: Shanghai Jiao Tong University Affiliated Six People's Hospital


organism_name: uncultured Prevotella sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Duncaniella sp.


organism_name: uncultured Adlercreutzia sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Kineothrix sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Ruminococcus bromii


organism_name: uncultured Helicobacteraceae bacterium


organism_name: uncultured Bacilli bacterium


organism_name: uncultured Rickettsiales bacterium


organism_name: Alistipes finegoldii


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Dorea sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Mucispirillum sp.


organism_name: uncultured Peptococcaceae bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: Salinibacter ruber


organism_name: uncultured Eggerthellaceae bacterium


organism_name: Bacteroides stercoris


organism_name: uncultured Mycoplasmatales bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Brachyspira sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Duncaniella sp.


organism_name: uncultured Rickettsiales bacterium


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Rikenella sp.


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Acetatifactor sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Bacilli bacterium


organism_name: uncultured Lachnospiraceae bacterium


asm_submitter: University of California San Diego


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Dorea sp.


organism_name: uncultured Hungatella sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured bacterium


organism_name: uncultured Christensenella sp.


organism_name: uncultured Muribaculum sp.


asm_submitter: Jiangnan University


organism_name: uncultured Eggerthellaceae bacterium


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Mailhella sp.


organism_name: uncultured Vampirovibrio sp.


organism_name: uncultured Eggerthella sp.


organism_name: uncultured Blautia sp.


asm_submitter: FRIEDRICH-LOEFFLER-INSTITUT (FLI) Institute for Bacterial Infections and Zoonoses (IBIZ)

organism_name: Brucella suis bv. 5


asm_submitter: ncipd

organism_name: Pseudomonas aeruginosa


asm_submitter: university of west london

organism_name: Escherichia coli O25b:H4-ST131


asm_submitter: Leiden University Medical Center

organism_name: Clostridioides difficile


asm_submitter: WELLCOME SANGER INSTITUTE

organism_name: uncultured Sphingomonas sp.


organism_name: uncultured Flavobacterium sp.


organism_name: Caulobacter vibrioides


organism_name: Candidatus Cytomitobacter primus


asm_submitter: Faculty of Health Sciences

isolate: clinical

organism_name: Mycolicibacterium canariasense


assembly_level: Chromosome

organism_name: uncultured Paracoccaceae bacterium


organism_name: uncultured Dehalococcoidia bacterium


organism_name: uncultured Burkholderiales bacterium


organism_name: Rhodothermales bacterium


organism_name: uncultured Acidimicrobiales bacterium


organism_name: uncultured Poribacteria bacterium


organism_name: uncultured Latescibacterota bacterium


organism_name: Binatia bacterium (SeqCode)


group: archaea

organism_name: uncultured Candidatus Nitrosopumilus sp.


organism_name: uncultured Acidobacteriota bacterium


organism_name: uncultured Flavobacteriales bacterium


organism_name: uncultured Pseudohongiella sp.


organism_name: uncultured Caldilineaceae bacterium


organism_name: Candidatus Dadabacteria bacterium


organism_name: uncultured Nitrospirales bacterium


organism_name: Aggregatilineales bacterium


organism_name: Kapaibacterium sp. (SeqCode)


organism_name: uncultured Lentisphaeria bacterium


organism_name: uncultured Roseovarius sp.


organism_name: uncultured Gemmatimonadota bacterium


organism_name: uncultured Acidimicrobiia bacterium


organism_name: uncultured Defluviicoccus sp.


organism_name: uncultured Rhizobiaceae bacterium


organism_name: uncultured Bryobacterales bacterium


organism_name: Arenicellales bacterium


organism_name: uncultured Opitutaceae bacterium


organism_name: uncultured Dehalococcoidia bacterium


organism_name: Terriglobia bacterium


organism_name: uncultured Pseudomonadales bacterium


organism_name: uncultured Acidimicrobiales bacterium


organism_name: Longimicrobiales bacterium


organism_name: uncultured Limibaculum sp.


organism_name: uncultured Poribacteria bacterium


organism_name: Binatia bacterium (SeqCode)


organism_name: Thermoanaerobaculia bacterium


organism_name: uncultured Parasphingorhabdus sp.


organism_name: uncultured Latescibacterota bacterium


organism_name: uncultured Caldilineaceae bacterium


organism_name: uncultured Pseudohongiella sp.


organism_name: uncultured Verrucomicrobiae bacterium


organism_name: uncultured Candidatus Entotheonella sp.


asm_submitter: Teagasc Food Research Centre, Ireland

organism_name: Lactobacillus jensenii


excluded_from_refseq: contaminated


asm_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen

organism_name: Pseudomonas aeruginosa


organism_name: Staphylococcus aureus


organism_name: Enterobacter hormaechei subsp. steigerwaltii


organism_name: Enterobacter hormaechei subsp. oharae


organism_name: Klebsiella pneumoniae


organism_name: Enterobacter hormaechei subsp. hoffmannii


organism_name: Enterobacter kobei


asm_submitter: University of Oxford

organism_name: Neisseria basseii


asm_submitter: University of Helsinki

excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Candidatus Acidiferrales bacterium


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly; genus undefined

organism_name: uncultured Terriglobales bacterium


organism_name: Candidatus Dormiibacterota bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: uncultured Methylocella sp.


organism_name: Casimicrobiaceae bacterium


organism_name: uncultured Gaiellaceae bacterium


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined


organism_name: uncultured Chthoniobacterales bacterium


organism_name: uncultured Ktedonobacteraceae bacterium


organism_name: uncultured Xanthobacteraceae bacterium


organism_name: uncultured Candidatus Udaeobacter sp.


organism_name: uncultured Methyloceanibacter sp.


excluded_from_refseq: derived from metagenome


organism_name: uncultured Gemmatimonadaceae bacterium


excluded_from_refseq: contaminated; derived from metagenome; genus undefined


organism_name: Escherichia coli O25b:H4-ST131


organism_name: Candidatus Eremiobacterales bacterium


organism_name: uncultured Bryobacteraceae bacterium


asm_submitter: UCIBIO/REQUIMTE-UPorto

organism_name: Klebsiella pneumoniae


asm_submitter: Universitaetsklinikum Freiburg

excluded_from_refseq: from large multi-isolate project


excluded_from_refseq: unverified source organism; from large multi-isolate project


asm_submitter: Wellcome Sanger Institute

organism_name: Neisseria uirgultaei


organism_name: Neisseria maigaei


organism_name: Neisseria blantyrii


organism_name: Neisseria benedictiae


organism_name: Neisseria viridiae


infraspecific_name: strain=CCUG 18163

organism_name: Neisseria bergeri


asm_submitter: chu de bordeaux

organism_name: Campylobacter coli


organism_name: Campylobacter jejuni


excluded_from_refseq: fragmented assembly


organism_name: uncultured Latescibacterota bacterium


organism_name: uncultured Dehalococcoidia bacterium


organism_name: Gemmatimonadota bacterium


organism_name: Caldilineaceae bacterium


organism_name: Longimicrobiales bacterium


organism_name: Minisyncoccota bacterium


organism_name: uncultured Candidatus Cenarchaeum sp.


organism_name: uncultured Acidimicrobiia bacterium


organism_name: uncultured Acidimicrobiales bacterium


organism_name: Chloroflexota bacterium


organism_name: uncultured Nitrospirales bacterium


organism_name: Candidatus Poribacteria bacterium


organism_name: uncultured Candidatus Entotheonella sp.


organism_name: uncultured Poribacteria bacterium


organism_name: uncultured Pseudomonadales bacterium


organism_name: Arenicellales bacterium


organism_name: Saprospiraceae bacterium


organism_name: uncultured Vicinamibacterales bacterium


organism_name: uncultured Caldilineaceae bacterium


organism_name: uncultured Dehalococcoidia bacterium


organism_name: uncultured Bryobacterales bacterium


organism_name: Tepidiformaceae bacterium


organism_name: uncultured Binatia bacterium (SeqCode)


organism_name: Longimicrobiales bacterium


organism_name: Cyclobacteriaceae bacterium


organism_name: Paracoccaceae bacterium


organism_name: Rhodothermales bacterium


organism_name: uncultured Acidimicrobiales bacterium


organism_name: Vicinamibacterales bacterium


organism_name: uncultured Spirochaetia bacterium


organism_name: uncultured Oligoflexales bacterium


organism_name: uncultured Poribacteria bacterium


organism_name: Caldilineaceae bacterium


organism_name: uncultured Pseudomonadales bacterium


organism_name: uncultured Chloroflexota bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Mesonia sp.


organism_name: Campylobacter coli


organism_name: uncultured Dehalococcoidia bacterium


annotation_name: Annotation submitted by universite de limoges

annotation_provider: universite de limoges

asm_submitter: universite de limoges

excluded_from_refseq: genome length too large

organism_name: Proteus mirabilis


organism_name: uncultured Rhizobiaceae bacterium


asm_submitter: IHU - Mediterranee Infection

organism_name: Porphyromonas vaginalis


asm_submitter: NORWEGIAN VETERINARY INSTITUTE

organism_name: Escherichia coli


excluded_from_refseq: contaminated; from large multi-isolate project


organism_name: uncultured Erythrobacter sp.


asm_submitter: elkh brc

organism_name: Acinetobacter baumannii


organism_name: Vibrio sinaloensis


asm_submitter: EMG

organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Coriobacteriia bacterium


organism_name: Mediterraneibacter torques


organism_name: uncultured Clostridia bacterium


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Ruminococcus bromii


organism_name: uncultured Alistipes sp.


organism_name: Mediterraneibacter gnavus


organism_name: uncultured Collinsella sp.


organism_name: uncultured Mitsuokella sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Faecalibacterium sp.


excluded_from_refseq: contaminated; derived from metagenome; genome length too small

organism_name: Pseudocoprococcus catus


organism_name: uncultured Slackia sp.


organism_name: uncultured Eggerthella sp.


organism_name: uncultured Coriobacteriia bacterium


organism_name: Dorea longicatena


organism_name: uncultured Blautia sp.


organism_name: Bifidobacterium animalis


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Cryptobacterium sp.


organism_name: Lactobacillus delbrueckii


organism_name: Adlercreutzia equolifaciens


organism_name: uncultured Akkermansia sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Anaerobutyricum hallii


organism_name: Streptococcus lutetiensis


organism_name: uncultured Collinsella sp.


organism_name: uncultured Prevotella sp.


organism_name: Segatella copri


organism_name: uncultured Coriobacteriia bacterium


organism_name: uncultured Butyrivibrio sp.


organism_name: uncultured Faecalibacterium sp.


organism_name: uncultured Olsenella sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Roseburia sp.


organism_name: Candidatus Eubacterium faecigallinarum


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Bacillota bacterium


organism_name: [Ruminococcus] lactaris


organism_name: uncultured Eggerthella sp.


organism_name: Christensenella minuta


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Blautia sp.


organism_name: Senegalimassilia anaerobia


organism_name: uncultured Atopobiaceae bacterium


organism_name: Catenibacterium mitsuokai


organism_name: uncultured Adlercreutzia sp.


organism_name: Blautia wexlerae


organism_name: Dialister invisus


excluded_from_refseq: RefSeq annotation failed; derived from metagenome


organism_name: Methanobrevibacter smithii


organism_name: uncultured Collinsella sp.


organism_name: uncultured Coriobacteriia bacterium


organism_name: uncultured Clostridium sp.


organism_name: Alistipes communis


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Phocaeicola coprocola


organism_name: Streptococcus salivarius


organism_name: Adlercreutzia equolifaciens


organism_name: Eubacterium ventriosum


organism_name: uncultured Parolsenella sp.


organism_name: Bifidobacterium catenulatum


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Bacillus mycoides


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Peptococcaceae bacterium


organism_name: Anaerostipes hadrus


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Akkermansia muciniphila


organism_name: Bacteroides mediterraneensis


organism_name: Collinsella tanakaei


organism_name: uncultured Prevotella sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Blautia sp.


organism_name: Eggerthella lenta


organism_name: uncultured Coprobacillus sp.


organism_name: Bifidobacterium adolescentis


organism_name: Phocaeicola vulgatus


organism_name: Bifidobacterium bifidum


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Dialister sp.


organism_name: uncultured Senegalimassilia sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: uncultured Ruminococcus sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: uncultured Oscillospiraceae bacterium


organism_name: Phocaeicola massiliensis


organism_name: Bacteroides eggerthii


organism_name: uncultured Bacillota bacterium


organism_name: Eshraghiella crossota


organism_name: uncultured Eubacteriales bacterium


organism_name: Intestinibacter bartlettii


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Collinsella sp.


organism_name: uncultured Coriobacteriia bacterium


annotation_name: Annotation submitted by LM-UGent

annotation_provider: LM-UGent

asm_submitter: LM-UGent

organism_name: Ralstonia mannitolilytica


organism_name: Ruminococcus bromii


organism_name: Dialister invisus


organism_name: Escherichia coli


organism_name: Blautia wexlerae


organism_name: uncultured Dorea sp.


organism_name: uncultured Rothia sp.


organism_name: uncultured Adlercreutzia sp.


infraspecific_name: strain=LMG 32967

organism_name: Ralstonia holmesii


infraspecific_name: strain=LMG 18102


infraspecific_name: strain=LMG 18091

organism_name: Ralstonia wenshanensis


organism_name: uncultured Sutterella sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: Mitsuokella multacida


excluded_from_refseq: contaminated; unverified source organism; annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Clostridium sp.


infraspecific_name: strain=LMG 19089

organism_name: Ralstonia edaphi


organism_name: Fusicatenibacter saccharivorans


organism_name: uncultured Clostridiaceae bacterium


organism_name: Odoribacter laneus


organism_name: Phocaeicola plebeius


organism_name: Alistipes shahii


organism_name: Gardnerella vaginalis


organism_name: uncultured Azospirillum sp.


organism_name: Acidaminococcus massiliensis


organism_name: Bifidobacterium longum


organism_name: uncultured Coriobacteriaceae bacterium


organism_name: uncultured Collinsella sp.


organism_name: uncultured Bacillota bacterium


organism_name: Odoribacter splanchnicus


organism_name: uncultured Alistipes sp.


organism_name: uncultured Rikenellaceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Ligilactobacillus salivarius


organism_name: uncultured Faecalibacterium sp.


organism_name: uncultured Anaerostipes sp.


organism_name: uncultured Parabacteroides sp.


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: uncultured Roseburia sp.


organism_name: uncultured Sutterella sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Opitutales bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Prevotella sp.


organism_name: Bacteroides thetaiotaomicron


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Cloacibacillus sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Bilophila sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Prevotellaceae bacterium


organism_name: Butyricimonas virosa


organism_name: Bacteroides cellulosilyticus


organism_name: uncultured Clostridium sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Roseburia sp.


organism_name: Bifidobacterium angulatum


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: uncultured bacterium


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Collinsella sp.


excluded_from_refseq: derived from metagenome

organism_name: Ruminococcus bromii


organism_name: uncultured Veillonellaceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Holdemanella sp.


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Akkermansia muciniphila


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Dialister sp.


organism_name: uncultured Butyrivibrio sp.


organism_name: uncultured Ruminococcus sp.


organism_name: Segatella copri


organism_name: uncultured Blautia sp.


organism_name: Phascolarctobacterium faecium


infraspecific_name: strain=LMG 7143

organism_name: Ralstonia thomasii


organism_name: Phascolarctobacterium succinatutens


organism_name: Eshraghiella crossota


organism_name: uncultured Collinsella sp.


organism_name: Barnesiella intestinihominis


organism_name: uncultured Roseburia sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: Ruminococcus bromii


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Eubacteriaceae bacterium


organism_name: Roseburia hominis


organism_name: uncultured Bacteroides sp.


organism_name: [Clostridium] innocuum


organism_name: Phocaeicola vulgatus


organism_name: uncultured Clostridium sp.


infraspecific_name: strain=LMG 8323

organism_name: Ralstonia mannitolilytica


organism_name: Collinsella tanakaei


organism_name: uncultured Eubacterium sp.


organism_name: Bacteroides salyersiae


organism_name: Alistipes putredinis


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Streptococcus sp.


organism_name: Akkermansia muciniphila


organism_name: uncultured Blautia sp.


organism_name: Limosilactobacillus oris


organism_name: uncultured bacterium


organism_name: uncultured Veillonella sp.


organism_name: uncultured Myxococcaceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: Providencia alcalifaciens


organism_name: Phocaeicola coprophilus


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Blautia wexlerae


organism_name: Sutterella wadsworthensis


organism_name: Streptococcus thermophilus


organism_name: uncultured Clostridium sp.


organism_name: Segatella copri


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Subdoligranulum sp.


organism_name: Phocaeicola plebeius


organism_name: uncultured Megasphaera sp.


organism_name: Escherichia coli


organism_name: Bifidobacterium pseudocatenulatum


organism_name: uncultured Collinsella sp.


organism_name: Bacteroides fragilis


infraspecific_name: strain=LMG 6871

organism_name: Ralstonia edaphi


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Prevotella sp.


organism_name: Megasphaera elsdenii


organism_name: uncultured bacterium


organism_name: Actinomyces urogenitalis


organism_name: uncultured Bifidobacterium sp.


organism_name: Candidatus Campylobacter infans


organism_name: uncultured Sutterella sp.


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Butyricicoccus sp.


organism_name: Desulfovibrio piger


organism_name: Alistipes finegoldii


organism_name: Bifidobacterium dentium


organism_name: uncultured Actinomyces sp.


organism_name: uncultured Neisseria sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Clostridia bacterium


organism_name: Lactobacillus crispatus


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Bacteroides sp.


organism_name: Roseburia hominis


organism_name: uncultured Clostridium sp.


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Collinsella sp.


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Veillonella sp.


organism_name: Megamonas funiformis


organism_name: Rothia mucilaginosa


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Veillonellaceae bacterium


organism_name: Catenibacterium mitsuokai


organism_name: uncultured Oscillibacter sp.


organism_name: Bacteroides eggerthii


organism_name: Collinsella bouchesdurhonensis


organism_name: uncultured Ruminococcus sp.


organism_name: Phocaeicola vulgatus


organism_name: uncultured Prevotella sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: Candidatus Mailhella merdavium


organism_name: uncultured Collinsella sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Geobacillus stearothermophilus


organism_name: Blautia obeum


organism_name: uncultured Phascolarctobacterium sp.


organism_name: uncultured Clostridia bacterium


organism_name: Acidaminococcus intestini


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Eggerthella sp.


organism_name: Leminorella grimontii


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Eubacteriaceae bacterium


organism_name: Alistipes ihumii


organism_name: uncultured Actinomycetes bacterium


organism_name: Bacteroides uniformis


organism_name: uncultured Parabacteroides sp.


organism_name: Bacteroides xylanisolvens


organism_name: uncultured Prevotellaceae bacterium


organism_name: Rothia kristinae


organism_name: uncultured Megasphaera sp.


organism_name: Ralstonia pickettii


organism_name: uncultured Collinsella sp.


organism_name: Phocaeicola massiliensis


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Atopobiaceae bacterium


organism_name: uncultured Clostridiaceae bacterium


organism_name: [Eubacterium] siraeum


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Bifidobacterium catenulatum


organism_name: Haemophilus parainfluenzae


organism_name: Blautia wexlerae


organism_name: uncultured Subdoligranulum sp.


organism_name: uncultured Streptococcus sp.


organism_name: Blautia obeum


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly

organism_name: uncultured Lactobacillus sp.


organism_name: Salmonella enterica


organism_name: Ralstonia mannitolilytica


organism_name: Methanobrevibacter smithii


organism_name: Dorea formicigenerans


organism_name: uncultured Prevotella sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Sutterella sp.


organism_name: Bacteroides stercoris


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Eubacteriales bacterium


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome


organism_name: Listeria monocytogenes


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Alistipes indistinctus


organism_name: Ligilactobacillus agilis


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Clostridia bacterium


organism_name: Ralstonia edaphi


organism_name: uncultured Coprococcus sp.


organism_name: uncultured Alistipes sp.


organism_name: Paraprevotella clara


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Lactobacillus johnsonii


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Bacilli bacterium


organism_name: uncultured Prevotella sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: Segatella copri


organism_name: Bacteroides stercoris


organism_name: Parabacteroides johnsonii


organism_name: Acidaminococcus intestini


organism_name: uncultured Sutterellaceae bacterium


organism_name: uncultured Bacteroides sp.


organism_name: Agathobacter rectalis


organism_name: Bacteroides fragilis


organism_name: Streptococcus parasanguinis


organism_name: Phocaeicola massiliensis


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Eubacterium ramulus


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Sutterella sp.


organism_name: uncultured Flavobacteriales bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: Bifidobacterium adolescentis


organism_name: uncultured Adlercreutzia sp.


organism_name: Sutterella wadsworthensis


organism_name: uncultured Clostridium sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Roseburia sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Collinsella sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Lentisphaeria bacterium


organism_name: uncultured Rikenellaceae bacterium


organism_name: uncultured Fusobacterium sp.


organism_name: uncultured Dialister sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Clostridia bacterium


organism_name: Roseburia hominis


organism_name: uncultured Subdoligranulum sp.


organism_name: uncultured Phascolarctobacterium sp.


organism_name: Bacteroides fragilis


organism_name: Streptococcus pasteurianus


organism_name: uncultured Sutterella sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Clostridium sp.


organism_name: Faecalimonas nexilis


organism_name: uncultured Prevotella sp.


organism_name: Ligilactobacillus salivarius


organism_name: Bacteroides salyersiae


organism_name: Eubacterium ventriosum


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Emergencia timonensis


organism_name: uncultured Collinsella sp.


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Eubacterium sp.


organism_name: Bacteroides congonensis


organism_name: Enterobacter hormaechei


organism_name: uncultured Subdoligranulum sp.


organism_name: uncultured Ruminococcus sp.


organism_name: Phocaeicola coprocola


organism_name: [Clostridium] scindens


organism_name: Barnesiella intestinihominis


organism_name: Candidatus Scatomorpha stercoravium


organism_name: uncultured Faecalibacterium sp.


organism_name: uncultured Staphylococcus sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Phascolarctobacterium sp.


organism_name: Pseudolactococcus raffinolactis


organism_name: uncultured Clostridium sp.


organism_name: uncultured bacterium


organism_name: uncultured Roseburia sp.


organism_name: Eshraghiella crossota


organism_name: Veillonella parvula


organism_name: Dorea longicatena


organism_name: uncultured Collinsella sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Sutterella sp.


organism_name: uncultured Coprobacillus sp.


organism_name: uncultured Dorea sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Leuconostoc lactis


organism_name: Alistipes onderdonkii


organism_name: Parabacteroides merdae


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Clostridiaceae bacterium


organism_name: [Eubacterium] siraeum


organism_name: uncultured Bacillota bacterium


organism_name: Lachnospira eligens


organism_name: uncultured Clostridium sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Prevotella sp.


organism_name: Senegalimassilia anaerobia


organism_name: Anaerobutyricum hallii


organism_name: Bacteroides ovatus


organism_name: Veillonella infantium


organism_name: Bacteroides finegoldii


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Veillonellaceae bacterium


organism_name: Roseburia inulinivorans


organism_name: uncultured Coriobacteriia bacterium


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Phocaeicola sp.


organism_name: Bacteroides xylanisolvens


organism_name: uncultured Eubacteriales bacterium


organism_name: Haemophilus parainfluenzae


organism_name: uncultured Clostridium sp.


organism_name: uncultured Fusobacterium sp.


organism_name: Bacteroides intestinalis


organism_name: Segatella copri


organism_name: Candidatus Mailhella merdavium


organism_name: Leyella stercorea


organism_name: Limosilactobacillus mucosae


organism_name: Clostridium perfringens


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Dialister sp.


organism_name: uncultured Staphylococcus sp.


organism_name: Ligilactobacillus ruminis


organism_name: uncultured Prevotella sp.


organism_name: uncultured Opitutales bacterium


organism_name: uncultured Coprococcus sp.


organism_name: uncultured Parabacteroides sp.


organism_name: Collinsella phocaeensis


organism_name: Bifidobacterium pseudocatenulatum


organism_name: uncultured Intestinimonas sp.


organism_name: Roseburia inulinivorans


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Mitsuokella sp.


organism_name: Citrobacter freundii


organism_name: Bacteroides thetaiotaomicron


organism_name: uncultured Roseburia sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Sutterella sp.


organism_name: Blautia wexlerae


organism_name: uncultured Ruminococcus sp.


organism_name: Roseburia hominis


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: Alistipes finegoldii


organism_name: uncultured Clostridia bacterium


organism_name: Escherichia coli


organism_name: uncultured Eubacterium sp.


organism_name: Dorea formicigenerans


organism_name: Parasutterella excrementihominis


organism_name: Phocaeicola plebeius


organism_name: Klebsiella pneumoniae


organism_name: uncultured Clostridium sp.


organism_name: Candidatus Alistipes faecigallinarum


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Bacteroides uniformis


organism_name: uncultured Rikenellaceae bacterium


organism_name: Coprococcus eutactus


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Desulfovibrio desulfuricans


organism_name: uncultured Eubacteriales bacterium


organism_name: Alistipes putredinis


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: Flavonifractor plautii


organism_name: Bacteroides cellulosilyticus


organism_name: Enterocloster bolteae


organism_name: Mediterraneibacter gnavus


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Clostridium sp.


organism_name: uncultured Collinsella sp.


organism_name: Phascolarctobacterium faecium


organism_name: uncultured Mycoplasma sp.


organism_name: uncultured Duncaniella sp.


organism_name: Phocaeicola vulgatus


organism_name: Alistipes timonensis


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Blautia sp.


organism_name: Ruminococcus bromii


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Olsenella sp.


organism_name: Pseudocoprococcus catus


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Eubacterium sp.


organism_name: Segatella copri


organism_name: uncultured Ruminococcus sp.


organism_name: Enterococcus hirae


organism_name: uncultured Clostridium sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Prevotella sp.


organism_name: Weissella confusa


organism_name: uncultured Sutterella sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Bacteroides salyersiae


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Eggerthella sp.


organism_name: Klebsiella pneumoniae


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Peptococcaceae bacterium


organism_name: uncultured Myxococcaceae bacterium


organism_name: Anaerostipes hadrus


organism_name: uncultured Coriobacteriia bacterium


organism_name: Dorea longicatena


organism_name: uncultured Collinsella sp.


organism_name: uncultured Coprobacillus sp.


organism_name: uncultured Acidaminococcus sp.


organism_name: Bacteroides thetaiotaomicron


organism_name: uncultured Prevotella sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Pseudocoprococcus catus


organism_name: uncultured Bacillota bacterium


organism_name: Alistipes ihumii


organism_name: uncultured Bacteroidales bacterium


organism_name: Blautia wexlerae


organism_name: Bacteroides fragilis


organism_name: Enterococcus hirae


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Haemophilus sp.


organism_name: [Ruminococcus] lactaris


organism_name: Akkermansia muciniphila


organism_name: Haemophilus parainfluenzae


organism_name: uncultured Eubacteriales bacterium


organism_name: Agathobacter rectalis


organism_name: uncultured Clostridium sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Faecalimonas nexilis


organism_name: Roseburia intestinalis


organism_name: uncultured Alistipes sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Holdemania sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Barnesiella intestinihominis


organism_name: Mitsuokella multacida


organism_name: Megasphaera elsdenii


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Eubacterium sp.


organism_name: Alistipes communis


organism_name: uncultured Bacillota bacterium


organism_name: Phocaeicola coprocola


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Sutterellaceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Haemophilus sp.


organism_name: Bifidobacterium bifidum


organism_name: Klebsiella pneumoniae


organism_name: Turicibacter sanguinis


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Bacilli bacterium


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Blautia wexlerae


organism_name: uncultured Collinsella sp.


organism_name: uncultured Coprobacillus sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Eubacterium sp.


organism_name: Flavonifractor plautii


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Bacillota bacterium


organism_name: Lactobacillus gasseri


organism_name: Bacteroides uniformis


organism_name: uncultured Clostridium sp.


organism_name: Bacteroides ovatus


organism_name: Bacteroides clarus


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Bifidobacterium adolescentis


organism_name: uncultured Prevotella sp.


organism_name: uncultured Gordonibacter sp.


organism_name: uncultured Verrucomicrobiota bacterium


organism_name: Collinsella intestinalis


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: Eubacterium ramulus


organism_name: uncultured bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Enterobacter sp.


organism_name: uncultured Coprococcus sp.


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Bacteroides sp.


organism_name: Bacteroides xylanisolvens


organism_name: uncultured Eubacterium sp.


organism_name: Lacrimispora saccharolytica


organism_name: Blautia wexlerae


organism_name: Allocoprococcus comes


organism_name: Anaerostipes hadrus


organism_name: uncultured Anaerotruncus sp.


organism_name: uncultured Collinsella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Prevotella sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Gemmiger sp.


organism_name: Bacteroides stercoris


organism_name: uncultured Eubacteriales bacterium


organism_name: Culturomica massiliensis


organism_name: Phocaeicola vulgatus


organism_name: uncultured Coprobacillus sp.


organism_name: uncultured Clostridium sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Sutterella sp.


organism_name: uncultured Blautia sp.


organism_name: Clostridium phoceensis


organism_name: uncultured Acidaminococcus sp.


organism_name: uncultured Dialister sp.


organism_name: uncultured Succinivibrio sp.


organism_name: Phocaeicola coprophilus


organism_name: Limosilactobacillus fermentum


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Dorea sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Bifidobacterium adolescentis


organism_name: Ruminococcus bromii


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Prevotellaceae bacterium


organism_name: Segatella copri


organism_name: uncultured Prevotella sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Sutterella sp.


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: Odoribacter splanchnicus


organism_name: Phascolarctobacterium succinatutens


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Parabacteroides goldsteinii


organism_name: uncultured Clostridia bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Escherichia coli


organism_name: Cloacibacillus porcorum


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Acidaminococcus intestini


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: Lacrimispora saccharolytica


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Alistipes sp.


organism_name: Bacteroides eggerthii


organism_name: Butyricimonas virosa


organism_name: uncultured Subdoligranulum sp.


organism_name: uncultured Adlercreutzia sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Coprococcus sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Emergencia timonensis


organism_name: uncultured Eggerthella sp.


organism_name: Leyella stercorea


organism_name: Blautia producta


organism_name: uncultured Clostridia bacterium


organism_name: Roseburia intestinalis


organism_name: uncultured Coriobacteriia bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Eubacterium sp.


organism_name: Escherichia coli


organism_name: uncultured Coprobacillus sp.


organism_name: Bacteroides clarus


organism_name: uncultured Cryptobacterium sp.


organism_name: Bacteroides ovatus


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Klebsiella aerogenes


organism_name: uncultured Roseburia sp.


organism_name: Dorea formicigenerans


organism_name: uncultured Bacillota bacterium


organism_name: Dorea longicatena


organism_name: uncultured Collinsella sp.


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Faecalibacterium sp.


organism_name: Bacteroides xylanisolvens


organism_name: uncultured Subdoligranulum sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Eggerthella sp.


organism_name: Catenibacterium mitsuokai


organism_name: Holdemanella biformis


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured bacterium


organism_name: Bifidobacterium dentium


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Romboutsia sp.


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Blautia sp.


organism_name: Streptococcus thermophilus


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Phocaeicola plebeius


organism_name: Alistipes onderdonkii


organism_name: uncultured Alistipes sp.


organism_name: uncultured Clostridium sp.


organism_name: Parasutterella excrementihominis


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Enorma sp.


organism_name: uncultured Anaerovibrio sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Bacteroides sp.


organism_name: uncultured bacterium


organism_name: Leyella stercorea


organism_name: Ruthenibacterium lactatiformans


organism_name: uncultured Bacilli bacterium


organism_name: Phocaeicola coprocola


organism_name: uncultured Desulfovibrio sp.


organism_name: Mediterraneibacter gnavus


organism_name: Blautia obeum


organism_name: Cloacibacillus evryensis


organism_name: uncultured Dialister sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Acidiphilium sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: Alistipes onderdonkii


organism_name: Streptococcus salivarius


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Methanobrevibacter smithii


organism_name: Bacteroides xylanisolvens


organism_name: uncultured Faecalibacterium sp.


organism_name: uncultured Candidatus Melainabacteria bacterium


organism_name: Bacteroides cutis


organism_name: uncultured Blautia sp.


organism_name: Lactobacillus gasseri


organism_name: Bacteroides uniformis


organism_name: Blautia schinkii


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Eggerthella sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Dorea sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Prevotella sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Adlercreutzia sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: Roseburia hominis


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Bifidobacterium adolescentis


organism_name: Sellimonas intestinalis


organism_name: Phascolarctobacterium succinatutens


organism_name: Roseburia inulinivorans


organism_name: Roseburia intestinalis


organism_name: uncultured Bacillota bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Alistipes finegoldii


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Acetobacter sp.


organism_name: Bacteroides eggerthii


organism_name: uncultured Clostridium sp.


organism_name: Blautia wexlerae


organism_name: uncultured Butyricicoccus sp.


organism_name: Bacteroides caccae


organism_name: Anaerobutyricum hallii


organism_name: uncultured Blautia sp.


organism_name: Holdemania filiformis


organism_name: Bifidobacterium longum


organism_name: uncultured Dorea sp.


organism_name: uncultured Sutterellaceae bacterium


organism_name: Phocaeicola plebeius


organism_name: Fusobacterium mortiferum


organism_name: uncultured Eubacteriales bacterium


organism_name: Phocaeicola massiliensis


organism_name: uncultured Eubacterium sp.


organism_name: Bacteroides thetaiotaomicron


organism_name: uncultured Romboutsia sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Subdoligranulum sp.


organism_name: uncultured Coprococcus sp.


organism_name: uncultured Acidaminococcus sp.


organism_name: Sellimonas intestinalis


organism_name: Pyramidobacter piscolens


organism_name: uncultured Butyricimonas sp.


organism_name: Bacteroides clarus


organism_name: uncultured Clostridium sp.


organism_name: Parabacteroides goldsteinii


organism_name: Megamonas funiformis


organism_name: uncultured Eggerthella sp.


organism_name: Phocaeicola plebeius


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: Sutterella wadsworthensis


organism_name: Blautia obeum


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Bifidobacterium longum


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Atopobiaceae bacterium


organism_name: uncultured Blautia sp.


organism_name: uncultured Prevotella sp.


organism_name: Streptococcus salivarius


organism_name: Bifidobacterium adolescentis


organism_name: uncultured Bacteroides sp.


organism_name: Acidaminococcus intestini


organism_name: uncultured Clostridium sp.


organism_name: uncultured Collinsella sp.


organism_name: Roseburia intestinalis


organism_name: Bacteroides stercoris


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Alistipes putredinis


organism_name: Alistipes communis


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Paraprevotella clara


organism_name: uncultured Bacillota bacterium


organism_name: Eshraghiella crossota


organism_name: uncultured Bacilli bacterium


organism_name: Acinetobacter junii


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Clostridium sp.


organism_name: Bifidobacterium angulatum


organism_name: Segatella copri


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Subdoligranulum sp.


organism_name: Anaerostipes hadrus


organism_name: Allocoprococcus comes


organism_name: uncultured Blautia sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: Eubacterium ventriosum


organism_name: uncultured Collinsella sp.


organism_name: Lactobacillus delbrueckii


organism_name: uncultured Slackia sp.


organism_name: Phascolarctobacterium succinatutens


organism_name: Bifidobacterium catenulatum


organism_name: Blautia wexlerae


organism_name: uncultured Coriobacteriia bacterium


organism_name: Candidatus Campylobacter infans


organism_name: Collinsella bouchesdurhonensis


organism_name: uncultured Prevotella sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Bifidobacterium adolescentis


organism_name: uncultured Clostridia bacterium


organism_name: Phocaeicola vulgatus


organism_name: uncultured Coprobacillus sp.


organism_name: Dorea longicatena


organism_name: Parabacteroides merdae


organism_name: uncultured Ruminococcus sp.


organism_name: [Clostridium] leptum


organism_name: Bacteroides fragilis


organism_name: Faecalibacterium prausnitzii


organism_name: Bifidobacterium animalis


organism_name: Parabacteroides distasonis


organism_name: Bacteroides salyersiae


organism_name: Coprobacter fastidiosus


organism_name: uncultured Clostridium sp.


organism_name: Barnesiella intestinihominis


organism_name: uncultured Rikenellaceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Collinsella sp.


organism_name: Akkermansia muciniphila


organism_name: Alistipes putredinis


organism_name: uncultured Prevotella sp.


organism_name: uncultured Bacteroides sp.


organism_name: Ruminococcus champanellensis


organism_name: uncultured Coprobacillus sp.


organism_name: uncultured Butyricicoccus sp.


organism_name: Comamonas kerstersii


organism_name: Butyricimonas virosa


organism_name: uncultured Prevotellaceae bacterium


organism_name: Blautia obeum


organism_name: Culturomica massiliensis


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Bacteroides stercoris


organism_name: Roseburia inulinivorans


organism_name: uncultured Eubacteriales bacterium


organism_name: Mediterraneibacter gnavus


organism_name: Lachnospira eligens


organism_name: Faecalimonas nexilis


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Clostridium sp.


organism_name: uncultured Veillonella sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: Bacteroides eggerthii


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Agathobacter rectalis


organism_name: Alistipes ihumii


organism_name: Holdemanella biformis


organism_name: uncultured Blautia sp.


organism_name: uncultured Romboutsia sp.


organism_name: uncultured Staphylococcus sp.


organism_name: uncultured Roseburia sp.


organism_name: Dorea longicatena


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Bacteroides sp.


organism_name: Roseburia inulinivorans


organism_name: Akkermansia muciniphila


organism_name: Paraprevotella xylaniphila


organism_name: uncultured Collinsella sp.


organism_name: uncultured Oribacterium sp.


organism_name: uncultured Gemmiger sp.


organism_name: Mediterraneibacter torques


organism_name: uncultured Clostridium sp.


organism_name: uncultured Eggerthella sp.


organism_name: uncultured Candidatus Saccharibacteria bacterium


organism_name: Bifidobacterium bifidum


excluded_from_refseq: from large multi-isolate project

organism_name: Escherichia coli


organism_name: uncultured Ruminococcus sp.


organism_name: Senegalimassilia anaerobia


organism_name: Barnesiella intestinihominis


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Blautia wexlerae


organism_name: uncultured Prevotella sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Alistipes sp.


organism_name: Brachyspira aalborgi


organism_name: Desulfovibrio piger


organism_name: Bilophila wadsworthia


organism_name: uncultured Parabacteroides sp.


organism_name: Anaerotignum lactatifermentans


organism_name: Alistipes onderdonkii


organism_name: uncultured Lachnoclostridium sp.


organism_name: Anaerostipes hadrus


organism_name: Agathobacter rectalis


organism_name: Citrobacter freundii


organism_name: Bacteroides eggerthii


organism_name: uncultured Akkermansia sp.


organism_name: Mediterranea massiliensis


organism_name: Bacteroides intestinalis


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Clostridium sp.


organism_name: Parabacteroides merdae


organism_name: Alistipes putredinis


organism_name: Phascolarctobacterium faecium


organism_name: uncultured Bacteroidales bacterium


organism_name: Segatella copri


organism_name: Paraprevotella clara


organism_name: uncultured Clostridiaceae bacterium


organism_name: Alistipes indistinctus


excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Collinsella sp.


organism_name: Holdemanella biformis


organism_name: uncultured Bacillota bacterium


organism_name: Bacteroides finegoldii


organism_name: Phocaeicola vulgatus


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Prevotella sp.


organism_name: uncultured Subdoligranulum sp.


organism_name: Bacteroides caccae


organism_name: Alistipes communis


organism_name: Phocaeicola massiliensis


organism_name: uncultured Mollicutes bacterium


organism_name: uncultured Flavobacteriales bacterium


organism_name: uncultured Clostridiaceae bacterium


organism_name: Bacteroides uniformis


organism_name: uncultured Coprococcus sp.


organism_name: Alistipes shahii


organism_name: uncultured Faecalibacterium sp.


organism_name: Sutterella wadsworthensis


organism_name: Klebsiella pneumoniae


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Bacteroides thetaiotaomicron


organism_name: uncultured Clostridium sp.


organism_name: Streptococcus salivarius


organism_name: Dorea longicatena


organism_name: uncultured Prevotella sp.


organism_name: Blautia wexlerae


organism_name: uncultured Eubacteriales bacterium


organism_name: Phocaeicola plebeius


organism_name: Dialister invisus


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Akkermansia sp.


organism_name: Desulfovibrio piger


organism_name: uncultured Collinsella sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Victivallis sp.


organism_name: Lachnospira eligens


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Blautia sp.


organism_name: Bifidobacterium adolescentis


organism_name: uncultured Bacillota bacterium


organism_name: [Eubacterium] siraeum


organism_name: Blautia wexlerae


organism_name: uncultured Pseudobutyrivibrio sp.


organism_name: Mediterraneibacter torques


organism_name: Bifidobacterium pseudocatenulatum


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Akkermansia muciniphila


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Lachnospira sp.


organism_name: uncultured Dialister sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Collinsella sp.


organism_name: Candidatus Cryptoclostridium obscurum


organism_name: uncultured Atopobiaceae bacterium


organism_name: Klebsiella variicola


organism_name: uncultured Clostridium sp.


organism_name: Bifidobacterium animalis


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Dialister invisus


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Ruminococcus sp.


organism_name: Bacteroides stercoris


organism_name: uncultured Dorea sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Roseburia sp.


organism_name: [Clostridium] leptum


organism_name: uncultured Faecalibacterium sp.


organism_name: Bacteroides faecis


organism_name: uncultured Opitutales bacterium


organism_name: [Ruminococcus] lactaris


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Veillonella sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Prevotella sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Bacteroides congonensis


organism_name: [Clostridium] scindens


organism_name: uncultured Holdemania sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Coprobacillus sp.


organism_name: Eggerthella lenta


organism_name: uncultured Ruminococcus sp.


organism_name: Thomasclavelia ramosa


organism_name: Ruthenibacterium lactatiformans


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Coprococcus sp.


organism_name: uncultured Mitsuokella sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Roseburia sp.


organism_name: Streptococcus salivarius


organism_name: uncultured Peptococcaceae bacterium


organism_name: uncultured Coprobacillus sp.


organism_name: uncultured Olsenella sp.


organism_name: Collinsella bouchesdurhonensis


organism_name: Dorea longicatena


organism_name: Enterococcus hirae


organism_name: uncultured Collinsella sp.


organism_name: Megamonas funiformis


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Dialister sp.


organism_name: Odoribacter laneus


organism_name: uncultured Mycoplasmatota bacterium


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Roseburia sp.


organism_name: Pyramidobacter piscolens


organism_name: uncultured Victivallis sp.


organism_name: Bacteroides salyersiae


organism_name: uncultured Anaerotruncus sp.


organism_name: Blautia wexlerae


organism_name: uncultured Veillonella sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: Phocaeicola vulgatus


organism_name: Akkermansia muciniphila


organism_name: uncultured Eubacteriaceae bacterium


organism_name: uncultured Sutterellaceae bacterium


organism_name: Catenibacterium mitsuokai


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Prevotella sp.


excluded_from_refseq: contaminated; derived from metagenome; genome length too small

organism_name: Pseudocoprococcus catus


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Rikenellaceae bacterium


organism_name: Limosilactobacillus mucosae


organism_name: Parabacteroides distasonis


excluded_from_refseq: derived from metagenome; fragmented assembly; genome length too small

organism_name: Coprobacter fastidiosus


organism_name: uncultured Mycoplasma sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Ruminococcus bromii


organism_name: Mediterraneibacter gnavus


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Butyricicoccus sp.


excluded_from_refseq: derived from metagenome; fragmented assembly

organism_name: uncultured Pseudomonas sp.


organism_name: Blautia obeum


organism_name: uncultured Alistipes sp.


organism_name: Turicimonas muris


organism_name: Lachnospira eligens


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Eggerthella sp.


organism_name: uncultured Desulfovibrio sp.


organism_name: Barnesiella intestinihominis


organism_name: Bacteroides cellulosilyticus


organism_name: uncultured Clostridiaceae bacterium


organism_name: Enterocloster bolteae


organism_name: uncultured Clostridium sp.


organism_name: Parabacteroides johnsonii


organism_name: Enterococcus faecium


organism_name: uncultured Streptococcus sp.


organism_name: Segatella copri


organism_name: uncultured Helicobacter sp.


organism_name: uncultured Rothia sp.


organism_name: Parabacteroides merdae


organism_name: Alistipes onderdonkii


organism_name: uncultured Sutterellaceae bacterium


organism_name: uncultured Prevotellaceae bacterium


infraspecific_name: strain=LMG 32966

organism_name: Ralstonia chuxiongensis


organism_name: uncultured Corynebacterium sp.


organism_name: Weissella confusa


organism_name: uncultured Ruminococcus sp.


excluded_from_refseq: derived from metagenome; fragmented assembly; genus undefined

organism_name: uncultured Oscillospiraceae bacterium


excluded_from_refseq: derived from metagenome

organism_name: Methanobrevibacter smithii


organism_name: uncultured Prevotella sp.


organism_name: Roseburia inulinivorans


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Butyricimonas virosa


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Pseudomonadota bacterium


organism_name: uncultured Roseburia sp.


organism_name: uncultured Faecalibacterium sp.


organism_name: uncultured Succinivibrio sp.


organism_name: uncultured Bilophila sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Collinsella sp.


organism_name: uncultured Mitsuokella sp.


organism_name: Leyella stercorea


organism_name: Acidaminococcus massiliensis


excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small

organism_name: Anaerostipes hadrus


organism_name: Bacteroides uniformis


organism_name: uncultured Alistipes sp.


organism_name: uncultured Gemmiger sp.


organism_name: uncultured Blautia sp.


organism_name: Comamonas kerstersii


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Sutterellaceae bacterium


organism_name: Bifidobacterium adolescentis


organism_name: uncultured Bacilli bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: Bifidobacterium longum


organism_name: uncultured Collinsella sp.


infraspecific_name: strain=LMG 18090

organism_name: Ralstonia mannitolilytica


organism_name: uncultured Sutterella sp.


infraspecific_name: strain=LMG 18096

organism_name: Ralstonia holmesii


organism_name: uncultured Anaerobiospirillum sp.


infraspecific_name: strain=LMG 7141

organism_name: Ralstonia condita


organism_name: Megamonas funiformis


organism_name: Micrococcus luteus


organism_name: Streptococcus pasteurianus


organism_name: Corynebacterium xerosis


organism_name: uncultured Coprococcus sp.


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Citrobacter sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Dialister sp.


organism_name: uncultured Bifidobacterium sp.


organism_name: Bifidobacterium breve


organism_name: Enterococcus asini


organism_name: Blautia marasmi


organism_name: Ralstonia mannitolilytica


infraspecific_name: strain=LMG 18095

organism_name: Ralstonia thomasii


organism_name: Acidaminococcus intestini


infraspecific_name: strain=LMG 19083

organism_name: Ralstonia psammae


organism_name: [Eubacterium] siraeum


organism_name: uncultured Eggerthellaceae bacterium


organism_name: uncultured Roseburia sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Olsenella sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: uncultured Porphyromonadaceae bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Coriobacteriaceae bacterium


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Prevotella sp.


organism_name: uncultured Faecalibacterium sp.


organism_name: uncultured Atopobiaceae bacterium


organism_name: Dialister invisus


organism_name: uncultured Blautia sp.


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome; fragmented assembly

organism_name: uncultured Butyricicoccus sp.


organism_name: Holdemanella biformis


organism_name: Dorea formicigenerans


organism_name: uncultured Coprococcus sp.


organism_name: Methanobrevibacter smithii


excluded_from_refseq: contaminated; unverified source organism; annotation fails MAG completeness check; derived from metagenome


organism_name: Akkermansia muciniphila


organism_name: uncultured Collinsella sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Gordonibacter urolithinfaciens


organism_name: Parabacteroides merdae


organism_name: uncultured Bacillota bacterium


organism_name: Bacteroides intestinalis


organism_name: Blautia wexlerae


organism_name: Eggerthella sinensis


organism_name: uncultured Coriobacteriia bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Eggerthella sp.


organism_name: Candidatus Woodwardiibium gallinarum


organism_name: uncultured Olsenella sp.


organism_name: uncultured Oscillibacter sp.


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Bifidobacterium sp.


organism_name: [Clostridium] leptum


organism_name: Gordonibacter pamelaeae


organism_name: uncultured Collinsella sp.


organism_name: uncultured Clostridia bacterium


organism_name: Lactobacillus amylovorus


organism_name: uncultured Alistipes sp.


organism_name: Blautia obeum


organism_name: Anaerostipes hadrus


organism_name: uncultured Ruminococcus sp.


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Bacteroides uniformis


organism_name: Alistipes onderdonkii


organism_name: uncultured Eubacteriales bacterium


organism_name: Parabacteroides distasonis


organism_name: Alistipes finegoldii


organism_name: uncultured Coprobacillus sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Faecalibacterium sp.


organism_name: Roseburia intestinalis


organism_name: uncultured Collinsella sp.


organism_name: uncultured Subdoligranulum sp.


organism_name: Megasphaera elsdenii


organism_name: Subdoligranulum variabile


organism_name: uncultured Clostridium sp.


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Bacillota bacterium


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: uncultured Eubacterium sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Megasphaera sp.


excluded_from_refseq: contaminated; derived from metagenome; fragmented assembly


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Collinsella intestinalis


organism_name: Agathobacter rectalis


organism_name: uncultured Eubacteriales bacterium


organism_name: Streptococcus thermophilus


organism_name: Dorea longicatena


organism_name: Allocoprococcus comes


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Citrobacter koseri


organism_name: uncultured Limosilactobacillus sp.


organism_name: Anaerostipes hadrus


organism_name: Methanobrevibacter smithii


organism_name: Candidatus Parachristensenella avicola


organism_name: uncultured Clostridium sp.


organism_name: Kluyvera georgiana


organism_name: uncultured Roseburia sp.


organism_name: uncultured Parabacteroides sp.


organism_name: Candidatus Woodwardiibium gallinarum


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: Dorea longicatena


organism_name: Bacteroides stercoris


organism_name: Eggerthella sinensis


organism_name: Faecalibacterium prausnitzii


organism_name: Roseburia inulinivorans


organism_name: uncultured Collinsella sp.


organism_name: uncultured Clostridia bacterium


organism_name: Phocaeicola coprophilus


organism_name: uncultured Opitutales bacterium


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Acidaminococcus sp.


organism_name: Ruminococcus bromii


organism_name: Eshraghiella crossota


organism_name: uncultured Clostridium sp.


organism_name: Fusicatenibacter saccharivorans


organism_name: uncultured Bacillota bacterium


organism_name: uncultured Faecalibacterium sp.


organism_name: Holdemanella biformis


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: Desulfovibrio piger


organism_name: Eubacterium ramulus


organism_name: uncultured Merdibacter sp.


organism_name: Catenibacterium mitsuokai


organism_name: uncultured Roseburia sp.


organism_name: uncultured Atopobiaceae bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Subdoligranulum sp.


organism_name: uncultured Eggerthella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: Clostridium perfringens


organism_name: uncultured Clostridium sp.


organism_name: Dorea formicigenerans


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Butyricicoccus sp.


organism_name: Coprococcus eutactus


organism_name: uncultured Eubacteriales bacterium


organism_name: Paraprevotella clara


organism_name: Blautia wexlerae


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Massilimicrobiota sp.


organism_name: uncultured Eubacterium sp.


organism_name: Hafnia alvei


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Bacteroides finegoldii


organism_name: uncultured Coriobacteriia bacterium


organism_name: uncultured Butyrivibrio sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Haemophilus sp.


organism_name: uncultured Faecalibacterium sp.


organism_name: Bacteroides faecis


organism_name: uncultured Coprobacillus sp.


organism_name: Dakarella massiliensis


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Bacteroidaceae bacterium


organism_name: uncultured Cryptobacterium sp.


organism_name: Akkermansia muciniphila


organism_name: Pediococcus acidilactici


organism_name: Alistipes onderdonkii


organism_name: [Eubacterium] siraeum


organism_name: Parabacteroides goldsteinii


organism_name: Parabacteroides johnsonii


organism_name: uncultured Subdoligranulum sp.


organism_name: Intestinibacter bartlettii


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Staphylococcus sp.


organism_name: uncultured Clostridium sp.


organism_name: Hafnia paralvei


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Eubacterium sp.


organism_name: Acidaminococcus fermentans


organism_name: Escherichia coli


organism_name: uncultured Merdibacter sp.


organism_name: uncultured Anaerotruncus sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Succinatimonas sp.


organism_name: Parabacteroides merdae


organism_name: uncultured Sutterella sp.


organism_name: Mediterranea massiliensis


organism_name: Bifidobacterium bifidum


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Collinsella sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Akkermansia muciniphila


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Prevotellaceae bacterium


organism_name: uncultured Bilophila sp.


organism_name: uncultured Faecalibacterium sp.


organism_name: [Ruminococcus] lactaris


organism_name: uncultured Oscillibacter sp.


organism_name: Blautia obeum


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Clostridiaceae bacterium


organism_name: Phocaeicola plebeius


organism_name: Allocoprococcus comes


organism_name: uncultured Prevotella sp.


organism_name: Streptococcus salivarius


organism_name: uncultured Acetobacter sp.


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Eubacterium ramulus


organism_name: Enterocloster bolteae


organism_name: uncultured Eubacteriales bacterium


organism_name: Bacteroides cellulosilyticus


organism_name: uncultured Clostridium sp.


organism_name: Roseburia intestinalis


organism_name: uncultured Bacillus sp.


organism_name: Turicibacter sanguinis


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: uncultured Escherichia sp.


organism_name: uncultured Adlercreutzia sp.


organism_name: uncultured Sutterella sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: Anaerostipes hadrus


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Mycoplasma sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Porphyromonadaceae bacterium


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome; genome length too small

organism_name: Succinatimonas hippei


organism_name: uncultured Alistipes sp.


organism_name: uncultured Dialister sp.


organism_name: Pseudocoprococcus catus


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Atopobium sp.


organism_name: uncultured Megasphaera sp.


organism_name: Bacteroides intestinalis


organism_name: Veillonella parvula


organism_name: Fusicatenibacter saccharivorans


organism_name: Akkermansia muciniphila


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Veillonella sp.


organism_name: Bacteroides fragilis


organism_name: [Clostridium] symbiosum


organism_name: Bifidobacterium longum


organism_name: Lacticaseibacillus rhamnosus


organism_name: Eggerthella lenta


organism_name: uncultured Collinsella sp.


organism_name: Phocaeicola dorei


organism_name: Escherichia coli


organism_name: Enterocloster clostridioformis


organism_name: Limosilactobacillus vaginalis


organism_name: uncultured Sutterella sp.


excluded_from_refseq: from large multi-isolate project


organism_name: Blautia wexlerae


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Clostridium sp.


organism_name: uncultured Rikenellaceae bacterium


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Fusicatenibacter saccharivorans


organism_name: Mediterraneibacter torques


organism_name: Parabacteroides johnsonii


organism_name: uncultured Eggerthella sp.


organism_name: Bacteroides eggerthii


organism_name: Klebsiella oxytoca


organism_name: uncultured Bacilli bacterium


organism_name: uncultured Candidatus Melainabacteria bacterium


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Lachnobacterium sp.


organism_name: Turicibacter sanguinis


organism_name: Odoribacter splanchnicus


organism_name: uncultured Clostridium sp.


organism_name: Agathobacter rectalis


organism_name: Veillonella parvula


organism_name: uncultured Lentisphaeria bacterium


organism_name: Butyricicoccus pullicaecorum


organism_name: uncultured Oscillospiraceae bacterium


organism_name: Phocaeicola plebeius


organism_name: uncultured Lachnospira sp.


organism_name: uncultured Eubacteriales bacterium


organism_name: Ruthenibacterium lactatiformans


organism_name: uncultured Bacteroidales bacterium


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome


organism_name: Parabacteroides goldsteinii


organism_name: uncultured bacterium


organism_name: uncultured Bacteroidaceae bacterium


organism_name: uncultured Collinsella sp.


organism_name: Lachnospira eligens


organism_name: Alistipes shahii


organism_name: uncultured Sphaerochaeta sp.


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Bacillota bacterium


organism_name: Akkermansia muciniphila


organism_name: uncultured Blautia sp.


organism_name: Parabacteroides distasonis


organism_name: uncultured Oscillospiraceae bacterium


organism_name: uncultured Lachnospiraceae bacterium


organism_name: Bacteroides fragilis


organism_name: uncultured Muribaculaceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: uncultured Clostridiaceae bacterium


organism_name: Streptococcus salivarius


organism_name: Bacteroides eggerthii


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Bacilli bacterium


organism_name: uncultured Prevotella sp.


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured bacterium


organism_name: uncultured Azospirillum sp.


organism_name: uncultured Anaerotruncus sp.


organism_name: uncultured Collinsella sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Coriobacteriia bacterium


organism_name: [Eubacterium] siraeum


organism_name: uncultured Clostridium sp.


organism_name: uncultured Methanobrevibacter sp.


organism_name: uncultured Oscillospiraceae bacterium


excluded_from_refseq: RefSeq annotation failed; derived from metagenome


organism_name: Enterocloster clostridioformis


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: [Clostridium] scindens


organism_name: Ruthenibacterium lactatiformans


organism_name: Bifidobacterium longum


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: [Clostridium] leptum


organism_name: uncultured Lachnospiraceae bacterium


organism_name: uncultured Eubacteriales bacterium


organism_name: Flavonifractor plautii


organism_name: uncultured Desulfovibrio sp.


organism_name: Paraprevotella clara


organism_name: Citrobacter freundii


organism_name: Dorea longicatena


organism_name: uncultured Clostridia bacterium


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Oscillibacter sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: uncultured Clostridium sp.


organism_name: uncultured Bacteroidales bacterium


organism_name: uncultured Collinsella sp.


organism_name: Faecalibacterium prausnitzii


organism_name: uncultured Blautia sp.


organism_name: Sutterella wadsworthensis


organism_name: uncultured Dialister sp.


organism_name: uncultured Romboutsia sp.


organism_name: Bifidobacterium catenulatum


organism_name: Blautia wexlerae


organism_name: uncultured Veillonella sp.


organism_name: uncultured Actinomyces sp.