asm_name: Rumen uncultured genome RUG13421


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI RefSeq

asm_name: Rumen uncultured genome RUG13413

asm_submitter: THE ROSLIN INSTITUTE

assembly_level: Scaffold

assembly_type: haploid

excluded_from_refseq: derived from metagenome; genus undefined

genome_rep: Full

group: archaea

organism_name: methanogenic archaeon

paired_asm_comp: identical

release_type: Major

version_status: suppressed


asm_name: Rumen uncultured genome RUG13422

excluded_from_refseq: RefSeq annotation failed; derived from metagenome

group: bacteria

organism_name: uncultured Bifidobacterium sp.


asm_name: Rumen uncultured genome RUG13435

excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Fibrobacter succinogenes


asm_name: Rumen uncultured genome RUG13454

excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Ruminococcus flavefaciens


asm_name: Rumen uncultured genome RUG13489


asm_name: Rumen uncultured genome RUG13504


asm_name: Rumen uncultured genome RUG13527

excluded_from_refseq: RefSeq annotation failed; annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Ruminococcus sp.


asm_name: Rumen uncultured genome RUG13588

organism_name: Sharpea azabuensis


asm_name: Rumen uncultured genome RUG13602

excluded_from_refseq: derived from metagenome

organism_name: uncultured Prevotella sp.


asm_name: Rumen uncultured genome RUG13612

organism_name: uncultured Selenomonas sp.


asm_name: Rumen uncultured genome RUG13662

organism_name: uncultured Dialister sp.


asm_name: Rumen uncultured genome RUG13665


asm_name: Rumen uncultured genome RUG13678


asm_name: Rumen uncultured genome RUG13674


asm_name: Rumen uncultured genome RUG13690


asm_name: Rumen uncultured genome RUG13739

organism_name: uncultured Megasphaera sp.


asm_name: Rumen uncultured genome RUG13742


asm_name: Rumen uncultured genome RUG13743


asm_name: Rumen uncultured genome RUG13745


asm_name: Rumen uncultured genome RUG13777


asm_name: Rumen uncultured genome RUG13847


asm_name: Rumen uncultured genome RUG13881

assembly_level: Contig


asm_name: Rumen uncultured genome RUG13886


asm_name: Rumen uncultured genome RUG13906

organism_name: uncultured Acidaminococcus sp.


asm_name: Rumen uncultured genome RUG13904


asm_name: Rumen uncultured genome RUG13916


asm_name: Rumen uncultured genome RUG13938


asm_name: Rumen uncultured genome RUG13974

organism_name: Segatella bryantii


asm_name: Rumen uncultured genome RUG13981


asm_name: Rumen uncultured genome RUG14000

organism_name: Pseudoselenomonas ruminantium


asm_name: Rumen uncultured genome RUG14013


asm_name: Rumen uncultured genome RUG14021


asm_name: Rumen uncultured genome RUG14015


asm_name: Rumen uncultured genome RUG14048


asm_name: Rumen uncultured genome RUG14062


asm_name: Rumen uncultured genome RUG14079

excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small

organism_name: Ligilactobacillus ruminis


asm_name: Rumen uncultured genome RUG14080

organism_name: Campylobacter fetus


asm_name: Rumen uncultured genome RUG14096

excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Erysipelothrix rhusiopathiae


asm_name: Rumen uncultured genome RUG14135


asm_name: Rumen uncultured genome RUG14133

organism_name: Heyndrickxia coagulans


asm_name: Rumen uncultured genome RUG14191


asm_name: Rumen uncultured genome RUG14205


asm_name: Rumen uncultured genome RUG14284


asm_name: Rumen uncultured genome RUG14306

organism_name: Bacillus licheniformis


asm_name: Rumen uncultured genome RUG14303

organism_name: Lentilactobacillus buchneri


asm_name: Rumen uncultured genome RUG14343

organism_name: Fibrobacter succinogenes


asm_name: Rumen uncultured genome RUG14402


asm_name: Rumen uncultured genome RUG14411


asm_name: Rumen uncultured genome RUG14420


asm_name: Rumen uncultured genome RUG14497


asm_name: Rumen uncultured genome RUG14540


asm_name: Rumen uncultured genome RUG14544


asm_name: Rumen uncultured genome RUG14562


asm_name: Rumen uncultured genome RUG14568


asm_name: Rumen uncultured genome RUG14609


asm_name: Rumen uncultured genome RUG14660

organism_name: uncultured Blautia sp.


asm_name: Rumen uncultured genome RUG14655


asm_name: Rumen uncultured genome RUG14683


asm_name: Rumen uncultured genome RUG14715


asm_name: Rumen uncultured genome RUG14777

organism_name: uncultured Ruminococcus sp.


asm_name: Rumen uncultured genome RUG14900

organism_name: Ruminococcus flavefaciens


asm_name: Rumen uncultured genome RUG14926


asm_submitter: UNIVERSITY OF VIENNA

organism_name: uncultured Friedmanniella sp.


organism_name: uncultured Sphingomonas sp.


organism_name: uncultured Sphingosinicella sp.


asm_submitter: University of Greifswald, Institute of Pharmacy

excluded_from_refseq: unverified source organism

organism_name: Acinetobacter baumannii


excluded_from_refseq: contaminated

organism_name: Escherichia coli


asm_submitter: MASSEY UNIVERSITY

excluded_from_refseq: annotation fails completeness check


asm_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ

assembly_level: Complete Genome

excluded_from_refseq: genus undefined

organism_name: Ruminococcaceae bacterium BL-4


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins


excluded_from_refseq: many frameshifted proteins


organism_name: Clostridiaceae bacterium


organism_name: Ruminococcaceae bacterium BL-6


asm_name: Chloroflexi

asm_submitter: RADBOUD UNIVERSITY

organism_name: Chloroflexota bacterium


organism_name: Actinomycetes bacterium


organism_name: Methylococcaceae bacterium


organism_name: bacterium


asm_name: verrucomicrobiaceae

organism_name: Verrucomicrobiota bacterium


asm_name: chloroflexi


organism_name: Acidobacteriota bacterium


organism_name: Clostridia bacterium


organism_name: archaeon


asm_submitter: CEBITEC

organism_name: Candidatus Frankia meridionalis


organism_name: Clostridiales bacterium


organism_name: Candidatus Frankia nodulisporulans


asm_submitter: URMITE

excluded_from_refseq: RefSeq annotation failed

organism_name: Acinetobacter sp. Marseille-Q1620


asm_submitter: Faculty of Health Sciences

isolate: isolate

organism_name: Brucella intermedia


organism_name: Brucella pseudintermedia


asm_submitter: Universidad San Francisco de Quito (USFQ)

excluded_from_refseq: from large multi-isolate project

isolate: FECES

organism_name: Escherichia coli


asm_submitter: UNIVERSITY OF WATERLOO

isolate: Sphingobium sp. RBC030

organism_name: uncultured Sphingobium sp.


excluded_from_refseq: annotation fails completeness check; genome length too small; many frameshifted proteins

organism_name: Comamonas jiangduensis


asm_submitter: CARDIFF SCHOOL OF BIOSCIENCES

organism_name: Burkholderia anthina


organism_name: Burkholderia ambifaria


organism_name: Burkholderia sp. BCC1642


organism_name: Burkholderia cenocepacia


organism_name: Burkholderia gladioli


asm_submitter: Institute of Biotechnology, University of Helsinki

isolate: Listeria monocytogenes strain C7

organism_name: Listeria monocytogenes


isolate: Listeria monocytogenes strain MB5


isolate: Listeria monocytogenes strain 2HF33


asm_submitter: UNIVERSITY OF OXFORD

isolate: clinical strain from anonymous patient from Besancon hospital

organism_name: Streptococcus salivarius

version_status: replaced


isolate: commensal strain from anonymous patient (individual 7)


isolate: commensal strain from anonymous patient (individual 1)


isolate: clinical strain from anonymous patient of Limoges Hospital


asm_submitter: KAUST

organism_name: Klebsiella pneumoniae


asm_submitter: CARDIFF UNIVERSITY

organism_name: Pseudomonas aeruginosa PAO1


organism_name: Treponema socranskii subsp. buccale


organism_name: Pseudomonas sp. Marseille-Q1929


asm_submitter: Center for Gut Microbiome and Nutrition Research, Washington University School of Medicine

organism_name: Bacteroides fragilis


asm_submitter: Max Planck Institute for Marine Microbiology

organism_name: Olavius algarvensis associated proteobacterium Delta 3


organism_name: Janthinobacterium sp. Marseille-P9896


asm_name: B.cereus WGS Assembly

asm_submitter: Institute for research in cancer and aging (IRCAN), Nice

organism_name: Bacillus cereus


asm_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

isolate: B brooksi SOXC

organism_name: Bathymodiolus brooksi thiotrophic gill symbiont


isolate: B brooksi SOXB


asm_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

organism_name: Sphingobacteriaceae bacterium


organism_name: Acidobacteriaceae bacterium


organism_name: Burkholderiaceae bacterium


organism_name: Sphingomonadaceae bacterium


organism_name: Chitinophagaceae bacterium


organism_name: PVC group bacterium


organism_name: Rhodospirillales bacterium


organism_name: Myxococcales bacterium


organism_name: Burkholderiales bacterium


organism_name: Betaproteobacteria bacterium


organism_name: Hyphomicrobiales bacterium


organism_name: Candidatus Parcubacteria bacterium


organism_name: Acetobacteraceae bacterium


asm_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID

organism_name: Providencia rettgeri


asm_submitter: KU Leuven

excluded_from_refseq: genome length too small

organism_name: Martinezella rhizogenes


organism_name: Agrobacterium tumefaciens


asm_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ

excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Lactobacillus sp.


asm_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

organism_name: Acidovorax facilis


asm_submitter: SC

organism_name: Staphylococcus aureus


isolate: IL


asm_name: freshwater MAG --- C5coas_bin-1371

asm_submitter: BILS

organism_name: uncultured Rhodopila sp.


asm_name: freshwater MAG --- Umea3_bin-1589

organism_name: Enhydrobacter aerosaccus


asm_name: freshwater MAG --- Umea1p2_bin-0125

organism_name: Vampirovibrio chlorellavorus


asm_name: freshwater MAG --- Umea2_bin-0026


asm_name: freshwater MAG --- MJ130916B_bin-104

organism_name: uncultured Gordonia sp.


asm_name: freshwater MAG --- Umea_bin-03849


asm_name: freshwater MAG --- Ja1_bin-2206

organism_name: Synechococcus lacustris


asm_name: freshwater MAG --- Umea1p3_bin-338


asm_name: freshwater MAG --- VK_bin-4720


asm_name: freshwater MAG --- I3_bin-232


asm_name: freshwater MAG --- Umea_bin-06497


asm_name: freshwater MAG --- B12_bin-2215


asm_name: freshwater MAG --- VK2_bin-0414

organism_name: uncultured Magnetospirillum sp.


asm_name: freshwater MAG --- Ja_bin-3540


asm_name: freshwater MAG --- MJ-time_bin-6433


asm_name: freshwater MAG --- Umea1_bin-2013


asm_name: freshwater MAG --- Ja2_bin-0664


asm_name: freshwater MAG --- Ja1-D5_bin-150


asm_name: freshwater MAG --- Ja1-D4_bin-589


asm_name: freshwater MAG --- MJ-time_bin-4714


organism_name: Burkholderia sp. AU31652


asm_name: freshwater MAG --- Ja1-D2_bin-0710


asm_name: freshwater MAG --- Loclat_bin-06971


asm_name: freshwater MAG --- Ja2-D2_bin-0074


asm_name: freshwater MAG --- MJ130916B_bin-216

organism_name: uncultured Pseudacidovorax sp.


asm_name: freshwater MAG --- AlinenLipids_bin-0414


asm_name: freshwater MAG --- G1_bin-0927


asm_name: freshwater MAG --- VK3_bin-1386


asm_name: freshwater MAG --- G1coas_bin-0117


asm_name: freshwater MAG --- Umea3p3_bin-0614


asm_name: freshwater MAG --- I3b_bin-088


asm_name: freshwater MAG --- Umea2p1_bin-0659


asm_name: freshwater MAG --- Umea_bin-02159


asm_name: freshwater MAG --- VK_bin-1759


asm_submitter: LSHTM

organism_name: Salmonella enterica


asm_submitter: UMR 1137 IAME

infraspecific_name: strain=Unknown:H5 / ND / 5362 (ST Warwick) / clade II

isolate: Fecal samples

organism_name: Escherichia coli


infraspecific_name: strain=O10:H52 / fimH612 / 2371 (ST Warwick) / clade III


infraspecific_name: strain=O130:H56 / fimH160 / 4104 (ST Warwick) / clade V


infraspecific_name: strain=O113:H6 / fimH90 / 3616 (ST Warwick) / B2


asm_name: freshwater MAG --- Loc080925-5-5m_bin-1014


asm_name: freshwater MAG --- Loc090907-5m_bin-323


asm_name: freshwater MAG --- Loc080925-7m_bin-0974


asm_name: freshwater MAG --- Loc090907-8-6m_bin-478


asm_submitter: IMPERIAL COLLEGE LONDON

organism_name: Enterobacter cloacae


organism_name: Klebsiella oxytoca


organism_name: Klebsiella pneumoniae


asm_name: freshwater MAG --- I-3_bin-102


asm_name: freshwater MAG --- Loc080925-8m_bin-908


asm_name: freshwater MAG --- Loc090519-5m_bin-0193


asm_name: freshwater MAG --- Loc090907-8m_bin-669


asm_name: freshwater MAG --- Loc080925-4-5m_bin-0190


asm_name: freshwater MAG --- Loc090721-8m_bin-650


asm_name: freshwater MAG --- Loc090721-4m_bin-0720


asm_name: freshwater MAG --- Loc090721-7m_bin-112


asm_name: freshwater MAG --- Loc080925-4m_bin-0603


asm_name: freshwater MAG --- Loc090721-5m_bin-503


asm_name: freshwater MAG --- Loc090907-6m_bin-455


asm_name: freshwater MAG --- Loc080925-8-8m_bin-316


asm_name: freshwater MAG --- G-1_bin-571


asm_name: freshwater MAG --- Loc080925-5m_bin-0946


asm_name: freshwater MAG --- Loc090721-6m_bin-132


asm_name: freshwater MAG --- Loc090519-4m_bin-515


asm_name: freshwater MAG --- Loc090721-8m_bin-647


asm_name: freshwater MAG --- Loc080925-6m_bin-0858


asm_name: freshwater MAG --- Loc080925-5-5m_bin-0723


asm_name: freshwater MAG --- Loc090721-8-6m_bin-0951


asm_name: freshwater MAG --- Loc081215-5m_bin-0692


asm_submitter: UNIVERSITY OF TROMSO

organism_name: Staphylococcus haemolyticus


asm_submitter: CIBIO-Inbio

assembly_level: Chromosome

isolate: Xanthomonas sp. CPBF 367

organism_name: Xanthomonas euroxanthea


isolate: Xanthomonas sp. CPBF 426


isolate: Xanthomonas arboricola pv. juglandis CPBF 427

organism_name: Xanthomonas arboricola pv. juglandis


asm_submitter: CARDIFF SCHOOL OF BIOSCIENCES

organism_name: Bacillus sp. ME75


organism_name: Bacillus sp. ME40


asm_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences

infraspecific_name: strain=CFBP 8129

organism_name: Xanthomonas hortorum pv. gardneri


asm_submitter: UMR 1253, INRA/Agrocampus

organism_name: Vibrio parahaemolyticus


asm_name: Xanthomonas arboricola CPBF 427 hybrid assembly


asm_submitter: IMEDEA

organism_name: Haloquadratum walsbyi


asm_submitter: URMITE

organism_name: Mycobacterium tuberculosis variant bovis


asm_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


asm_submitter: EI

organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


asm_submitter: Centro Nacional de Análisis Genómico


asm_submitter: Institute of Infection, Veterinary & Ecological Sciences

organism_name: Shigella flexneri


asm_submitter: CEBITEC

organism_name: Pseudomonas paraversuta


asm_submitter: IZSLT (Istituto Zooprofilattico Sperimentale del Lazio e la Toscana)


asm_submitter: THE ROSLIN INSTITUTE

excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Flavonifractor sp. An10


organism_name: Lachnoclostridium sp. An138


organism_name: Candidatus Harrysmithiimonas galli


organism_name: Candidatus Gallimonas merdigallinarum


organism_name: Lachnoclostridium sp. An76


organism_name: uncultured Agathobaculum sp.


organism_name: Candidatus Pseudoscillospira falkowii


organism_name: Limosilactobacillus reuteri


organism_name: Pseudoflavonifractor sp. An184


organism_name: Candidatus Gallimonas merdae


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Drancourtella sp. An57


organism_name: Ligilactobacillus salivarius


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Lactobacillus gallinarum


excluded_from_refseq: derived from metagenome

organism_name: Eubacterium sp. An11


organism_name: Anaeromassilibacillus sp. An250


organism_name: Massilimicrobiota sp. An134


organism_name: Candidatus Avimonas merdigallinarum


organism_name: Candidatus Metalachnospira gallinarum


organism_name: Candidatus Gallimonas faecium


organism_name: Lachnoclostridium sp. An196


organism_name: Ruminococcus sp. UBA1409


organism_name: Candidatus Neoclostridium roslinense


organism_name: Candidatus Paralachnospira caecorum


organism_name: Flavonifractor sp. An10


organism_name: Candidatus Avimonas intestinalis


organism_name: Candidatus Neoanaerotignum galli


organism_name: Lactobacillus crispatus


organism_name: uncultured Agathobaculum sp.


organism_name: Limosilactobacillus reuteri


organism_name: Pseudoflavonifractor sp. An184


organism_name: Candidatus Heritagella intestinalis


organism_name: Lachnoclostridium sp. An76


organism_name: Anaeromassilibacillus sp. An250


organism_name: Drancourtella sp. An57


organism_name: Gordonibacter sp. An232A


organism_name: Lachnoclostridium sp. An118


organism_name: Candidatus Timburyella stercoris


organism_name: Lachnoclostridium sp. An138


organism_name: Lachnoclostridium sp. An196


organism_name: Candidatus Metalachnospira gallinarum


organism_name: uncultured Escherichia sp.


organism_name: Candidatus Protoclostridium gallicola


organism_name: Faecalibacterium sp. An121


organism_name: Candidatus Gallimonas merdigallinarum


organism_name: Lactobacillus johnsonii


organism_name: Candidatus Gallimonas faecavium


organism_name: Blautia sp. An81


organism_name: Eubacterium sp. ER2


organism_name: Flavonifractor sp. An10


organism_name: Lachnoclostridium sp. An76


organism_name: Massilimicrobiota sp. An134


organism_name: Candidatus Gallimonas caecicola


organism_name: Candidatus Gallimonas intestinalis


organism_name: Candidatus Heritagella gallinarum


organism_name: Candidatus Avimicrobium caecorum


organism_name: Pseudoflavonifractor sp. An184


organism_name: Candidatus Avimonas narfae


organism_name: Candidatus Arthromitus sp. SFB-turkey


organism_name: Candidatus Gallispira edinburgensis


organism_name: Candidatus Avispirillum faecium


organism_name: Candidatus Paralachnospira sangeri


organism_name: Candidatus Aristotella avistercoris


organism_name: Faecalibacterium sp. UBA1819


organism_name: [Clostridium] saccharolyticum WM1


organism_name: Candidatus Alangreenwoodia gallinarii


organism_name: Candidatus Neoruminococcus faecicola


organism_name: Candidatus Geddesella stercoravicola


organism_name: Gordonibacter urolithinfaciens


organism_name: Drancourtella sp. An57


organism_name: uncultured Romboutsia sp.


organism_name: Lactobacillus crispatus


organism_name: Brachybacterium paraconglomeratum


organism_name: Candidatus Avimonas intestinalis


organism_name: Lachnoclostridium sp. An169


organism_name: Candidatus Heritagella intestinalis


organism_name: Candidatus Avimonas faecium


organism_name: Candidatus Heritagella caecorum


organism_name: Escherichia coli


organism_name: Candidatus Avimicrobium faecavium


organism_name: Candidatus Pararuminococcus gallinarum


organism_name: Enterococcus cecorum


organism_name: Candidatus Heteroscillospira lomanii


organism_name: Lachnoclostridium sp. An76


organism_name: uncultured Anaerostipes sp.


organism_name: Candidatus Gallimonas merdae


organism_name: Candidatus Woodwardiibium gallinarum


organism_name: Eubacterium sp. ER2


organism_name: Candidatus Neochristensenella gallicola


organism_name: Candidatus Pseudoruminococcus merdavium


organism_name: Candidatus Avimonas caecicola


organism_name: Lachnoclostridium sp. An138


organism_name: Candidatus Roslinia caecavium


organism_name: Pseudoflavonifractor sp. An184


organism_name: Candidatus Tabaqchalia intestinavium


organism_name: Candidatus Pseudolachnospira avium


organism_name: Candidatus Metaruminococcus caecorum


organism_name: Candidatus Alloscillospira gallinarum


organism_name: Candidatus Falkowella caecavicola


organism_name: Candidatus Schneewindia gallinarum


organism_name: Candidatus Parachristensenella avicola


organism_name: Candidatus Neoanaerotignum tabaqchaliae


organism_name: Candidatus Paralachnospira avium


organism_name: Candidatus Adamsella avium


organism_name: Anaeromassilibacillus sp. An250


organism_name: Candidatus Alloruminococcus vanvlietii


organism_name: Candidatus Cryptoclostridium obscurum


organism_name: Candidatus Heritagella intestinalis


organism_name: Candidatus Pseudoscillospira faecavium


organism_name: Candidatus Howiella intestinavium


organism_name: Flavonifractor sp. An10


asm_submitter: CGS-GL

isolate: Bordetella pseudohinzii 5-5

organism_name: Bordetella pseudohinzii


asm_submitter: Erasmus University Medical Center

isolate: Staphylococcus

organism_name: Staphylococcus roterodami


asm_submitter: University of Nairobi

isolate: Sphingobium sp. strain S8

organism_name: Sphingobium sp. S8


isolate: Sphingobium sp. strain S6

organism_name: Sphingobium sp. S6


asm_submitter: IHU - Mediterranee Infection

organism_name: Microbacterium hydrocarbonoxydans


asm_submitter: University Hospital Basel

organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


asm_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

isolate: Psychrobacter faecalis Iso-46

organism_name: Psychrobacter faecalis


isolate: Psychrobacter faecalis PBFP-1


isolate: Psychrobacter immobilis 1347

organism_name: Psychrobacter immobilis


isolate: Psychrobacter immobilis 1184


asm_submitter: Friedrich Schiller University Jena

organism_name: Acidithrix sp. C25


isolate: Acidocella sp. C78

organism_name: Acidocella sp. C78


asm_submitter: Monash University

organism_name: Klebsiella pneumoniae


organism_name: Burkholderia cepacia


asm_submitter: Max Planck Institute for Marine Microbiology

organism_name: Candidatus Argoarchaeum ethanivorans


asm_submitter: UNIVERSITY MEDICAL CENTER UTRECHT

organism_name: Enterococcus faecalis


asm_submitter: University of Vienna,Centre for Microbiology and Environmental Systems Science, Division of Microbial Ecology

isolate: VALLOT

organism_name: Candidatus Vallotiella hemipterorum


asm_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences

infraspecific_name: strain=GBBC 2199

organism_name: Xanthomonas hydrangeae


infraspecific_name: strain=GBBC 2202


infraspecific_name: strain=LMG 31885

isolate: GBBC 2128


asm_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

organism_name: Chlamydia abortus


asm_submitter: UMR 1253, INRA/Agrocampus

organism_name: Vibrio sp. B1REV9


organism_name: Vibrio sp. B1FIG11


asm_submitter: Institut Pasteur

infraspecific_name: strain=CIPT 140070005

isolate: STB-G

organism_name: Mycobacterium canetti CIPT 140070005


asm_submitter: UTRECHT UNIVERSITY

organism_name: Campylobacter fetus


asm_submitter: EMG

organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Prevotella sp.


organism_name: Fusobacterium necrophorum


organism_name: Streptococcus pasteurianus


organism_name: Collinsella stercoris


organism_name: Enterocloster asparagiformis


organism_name: Limosilactobacillus mucosae


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Haemophilus sp.


organism_name: uncultured Acidaminococcus sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Fusobacterium sp.


organism_name: uncultured Anaerotignum sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Romboutsia sp.


organism_name: uncultured Granulicatella sp.


organism_name: uncultured Pyramidobacter sp.


organism_name: Catenibacterium mitsuokai


organism_name: uncultured Dialister sp.


organism_name: uncultured Actinomyces sp.


organism_name: uncultured Prevotella sp.

paired_asm_comp: different


organism_name: uncultured Bifidobacterium sp.


organism_name: Bifidobacterium dentium


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Marvinbryantia sp.


organism_name: uncultured Brachyspira sp.


organism_name: [Clostridium] symbiosum


organism_name: Holdemanella biformis


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Enterococcus sp.


organism_name: Bacteroides intestinalis


organism_name: uncultured Clostridium sp.


organism_name: uncultured Haemophilus sp.


organism_name: Ruminococcus bromii


organism_name: Clostridium paraputrificum


organism_name: Odoribacter splanchnicus


organism_name: uncultured Eggerthella sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Selenomonas sp.


organism_name: Lactobacillus johnsonii


organism_name: uncultured Acidaminococcus sp.


organism_name: Streptococcus lutetiensis


organism_name: uncultured Veillonella sp.


organism_name: uncultured Intestinibacter sp.


organism_name: Rothia mucilaginosa


organism_name: Sutterella parvirubra


organism_name: uncultured Phascolarctobacterium sp.


organism_name: Methanobrevibacter smithii


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Dialister sp.


organism_name: uncultured Mediterranea sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Treponema sp.


organism_name: uncultured Haemophilus sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Anaerotignum sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Cloacibacillus sp.


organism_name: Bacteroides intestinalis


organism_name: uncultured Duodenibacillus sp.


asm_submitter: CNAG-CRG

organism_name: Escherichia coli


organism_name: Citrobacter freundii


organism_name: Klebsiella ornithinolytica


asm_submitter: CENTRO SUPERIOR DE INVESTIGACION EN SALUD PUBLICA

organism_name: Alistipes sp. CU970


organism_name: Enterobacter cloacae


organism_name: Klebsiella oxytoca


organism_name: Serratia marcescens


asm_submitter: THE ROSLIN INSTITUTE

organism_name: Selenomonas sp. AE3005


asm_submitter: Universidade Federal de Vicosa

organism_name: Streptococcus lutetiensis


asm_submitter: University of Dundee Data Analysis Group

organism_name: Bacillus subtilis


organism_name: Klebsiella quasipneumoniae


asm_name: Fenollaria sporofastidiosus EMRHCC_24

asm_submitter: UNIVERSITY OF EAST ANGLIA, UK

isolate: Fenollaria sporofastidiosus

organism_name: Fenollaria sporofastidiosus


isolate: Varibaculum prostatecancerukia

organism_name: Varibaculum prostatecancerukia


asm_submitter: IMEDEA

organism_name: Salinibacter ruber


excluded_from_refseq: unverified source organism; from large multi-isolate project


organism_name: Klebsiella aerogenes


organism_name: Klebsiella variicola


organism_name: Citrobacter koseri


organism_name: Rothia mucilaginosa


organism_name: Prevotella sp. oral taxon 306


organism_name: Neisseria subflava


organism_name: Lactobacillus paragasseri


organism_name: Centipeda periodontii


organism_name: Filifactor alocis


organism_name: Hoylesella saccharolytica


organism_name: Cryptobacterium curtum


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Actinomyces oris


organism_name: Lautropia mirabilis


organism_name: Jonquetella anthropi


organism_name: Selenomonas sp. F0473


organism_name: Desulfobulbus oralis


excluded_from_refseq: unverified source organism; annotation fails MAG completeness check; derived from metagenome

organism_name: Schaalia odontolytica


organism_name: Actinomyces massiliensis


asm_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

organism_name: Planktotalea frisia


organism_name: uncultured Psychroserpens sp.


asm_submitter: UNIVERSITY OF ST ANDREWS

organism_name: Enterococcus faecalis


asm_submitter: NORWEGIAN UNIVERSITY OF LIFE SCIENCES

excluded_from_refseq: unverified source organism

organism_name: Aeromonas australiensis


excluded_from_refseq: annotation fails completeness check

organism_name: Brucella anthropi


isolate: Fecal samples

organism_name: Escherichia coli


asm_submitter: UNIVERSITY OF CAMBRIDGE

organism_name: Sangeribacter muris


organism_name: Staphylococcus xylosus


organism_name: Lactobacillus intestinalis


organism_name: Limosilactobacillus reuteri


excluded_from_refseq: genome length too large

organism_name: Enterocloster clostridioformis


organism_name: Staphylococcus warneri


organism_name: Granulicatella adiacens


organism_name: Adlercreutzia caecimuris


organism_name: Streptococcus oralis


organism_name: Bacillus licheniformis


organism_name: Cutibacterium acnes


organism_name: Parabacteroides distasonis


organism_name: Staphylococcus epidermidis


organism_name: Staphylococcus pasteuri


organism_name: uncultured Prevotella sp.


organism_name: uncultured Dubosiella sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Muribaculum sp.


organism_name: uncultured Phocaeicola sp.


organism_name: Duncaniella muris


organism_name: uncultured Escherichia sp.


organism_name: uncultured Enterobacter sp.


organism_name: uncultured Allobaculum sp.


organism_name: uncultured Acetatifactor sp.


organism_name: Mammaliicoccus lentus


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Duncaniella sp.


organism_name: uncultured Parasutterella sp.


organism_name: Enterocloster clostridioformis


organism_name: Muribacter muris


excluded_from_refseq: RefSeq annotation failed; annotation fails MAG completeness check; derived from metagenome


organism_name: Ruthenibacterium lactatiformans


organism_name: uncultured Prevotella sp.


organism_name: Bacteroides intestinalis


organism_name: uncultured Alistipes sp.


organism_name: uncultured Lactobacillus sp.


asm_submitter: King Abdullah University of Science and Technology

isolate: VU-WI


asm_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

organism_name: Staphylococcus haemolyticus


organism_name: Staphylococcus felis


asm_submitter: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

organism_name: Escherichia coli


asm_submitter: Institut Pasteur

infraspecific_name: strain=CIP 111803

organism_name: Leucobacter soli


infraspecific_name: strain=CIP 111802

organism_name: Paenibacillus allorhizosphaerae


organism_name: Clostridium haemolyticum


asm_submitter: UTRECHT UNIVERSITY

organism_name: Campylobacter fetus


asm_submitter: JOHN INNES CENTRE, NORWICH, UK.

organism_name: Pseudomonas fluorescens


asm_submitter: EMG

organism_name: uncultured Marinobacter sp.


organism_name: Vibrio caribbeanicus


organism_name: uncultured Prochlorococcus sp.


organism_name: uncultured Pseudoalteromonas sp.


organism_name: uncultured Microbacterium sp.


organism_name: uncultured Methylophaga sp.


organism_name: uncultured Roseivirga sp.


organism_name: Christiangramia flava


organism_name: Hyphomonas atlantica corrig.


organism_name: uncultured Sulfitobacter sp.


organism_name: Leeuwenhoekiella blandensis


organism_name: uncultured Cobetia sp.


organism_name: Vibrio gallaecicus


organism_name: uncultured Lacinutrix sp.


organism_name: uncultured Algoriphagus sp.


organism_name: Psychroflexus salarius


organism_name: uncultured Thalassospira sp.


organism_name: uncultured Marinobacter sp.


organism_name: Alteromonas macleodii


organism_name: Cognaticolwellia aestuarii


organism_name: uncultured Alteromonas sp.


organism_name: uncultured Halomonas sp.


organism_name: uncultured Alcanivorax sp.


organism_name: uncultured Rhodococcus sp.


organism_name: uncultured Pseudoalteromonas sp.


organism_name: Colwellia polaris


organism_name: uncultured Cycloclasticus sp.


organism_name: uncultured Spongiibacter sp.


organism_name: uncultured Sphingomonas sp.


asm_submitter: Quadram Bioscience Institute

organism_name: Bifidobacterium pseudocatenulatum


organism_name: Listeria ilorinensis


asm_name: MegCarteria

asm_submitter: UNIVERSITY OF LIVERPOOL

isolate: MegCarteria

organism_name: Candidatus Megaera polyxenophila


asm_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

organism_name: uncultured Pseudomonas sp.


organism_name: uncultured Acinetobacter sp.


organism_name: uncultured Chryseobacterium sp.


organism_name: uncultured Enterobacter sp.


organism_name: uncultured Acidovorax sp.


organism_name: uncultured Pantoea sp.


organism_name: uncultured Serratia sp.


excluded_from_refseq: contaminated; unverified source organism; derived from metagenome


organism_name: uncultured Erwinia sp.


organism_name: uncultured Deinococcus sp.


excluded_from_refseq: annotation fails completeness check; derived from metagenome

organism_name: uncultured Klebsiella sp.


organism_name: uncultured Stenotrophomonas sp.


organism_name: uncultured Spirosoma sp.


organism_name: uncultured Novosphingobium sp.


organism_name: uncultured Vagococcus sp.


organism_name: uncultured Herbaspirillum sp.


organism_name: uncultured Agrobacterium sp.


organism_name: uncultured Roseateles sp.


organism_name: uncultured Brevundimonas sp.


organism_name: uncultured Pseudomonas sp.


organism_name: uncultured Acinetobacter sp.


organism_name: uncultured Chryseobacterium sp.


organism_name: uncultured Curtobacterium sp.


organism_name: uncultured Acidovorax sp.


organism_name: uncultured Methylobacterium sp.


asm_submitter: Institut de Recherche pour le Developpement

excluded_from_refseq: RefSeq annotation failed

organism_name: Burkholderia gladioli


organism_name: Burkholderia vietnamiensis


organism_name: Paraburkholderia sabiae


organism_name: Paraburkholderia caribensis


organism_name: Burkholderia cepacia


organism_name: Burkholderia diffusa


organism_name: Paraburkholderia unamae


asm_submitter: Sciensano

organism_name: Snodgrassella alvi


organism_name: uncultured Porphyromonas sp.


organism_name: Prevotella pallens


organism_name: Rothia mucilaginosa


organism_name: Lautropia mirabilis


organism_name: Schaalia odontolytica


organism_name: Prevotella dentalis


asm_submitter: NATIONAL VETERINARY INSTITUTE (SVA)

infraspecific_name: strain=Campylobacter upsaliensis CCUG 14913

organism_name: Campylobacter upsaliensis


asm_submitter: Erasmus University Medical Center

organism_name: Escherichia coli


isolate: Previously collected from blood cultures (R)

organism_name: Klebsiella pneumoniae


asm_submitter: Haukeland University Hospital

organism_name: Escherichia marmotae


asm_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases

organism_name: Hoylesella shahii


excluded_from_refseq: derived from metagenome; many frameshifted proteins

organism_name: uncultured Actinomyces sp.


organism_name: Prevotella aurantiaca


organism_name: uncultured Rothia sp.


asm_submitter: IHU - Mediterranee Infection

organism_name: Pseudoclavibacter sp. Marseille-Q3772


organism_name: Pseudomonas sp. Marseille-Q3773


organism_name: uncultured Selenomonas sp.


asm_submitter: Center for Biotechnology, Bielefeld University

excluded_from_refseq: contaminated

organism_name: Protofrankia sp. CiT1


asm_submitter: ROTHAMSTED RESEARCH

organism_name: Wolbachia endosymbiont of Ceutorhynchus assimilis


organism_name: Wolbachia endosymbiont of Phyllotreta striolata


organism_name: Rickettsia endosymbiont of Ceutorhynchus assimilis


asm_submitter: Hopital Henri Mondor APHP

excluded_from_refseq: from large multi-isolate project


excluded_from_refseq: contaminated; from large multi-isolate project


organism_name: Staphylococcus aureus


asm_submitter: Genetique Moleculaire, Genomique, Microbiologie (GMGM), Universite de Strasbourg

isolate: Stenotrophomonas maltophilia 1800

organism_name: Stenotrophomonas maltophilia


asm_submitter: University of Dundee

organism_name: Pseudomonas sp. Bi70


organism_name: Acinetobacter baumannii


asm_submitter: University of Paris

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Clostridium neonatale


asm_submitter: LM-UGent

excluded_from_refseq: genome length too small; not used as type

infraspecific_name: strain=LMG 10661

organism_name: Ralstonia syzygii subsp. syzygii


asm_submitter: University Hospital Basel

organism_name: Bacillus basilensis


asm_submitter: RADBOUD UNIVERSITY, Department Microbiology

organism_name: Candidatus Nitrotoga sp. HW29


asm_submitter: university of ljubljana, biotechnical faculty

organism_name: Leuconostoc pseudomesenteroides


asm_submitter: marathon study consortium

organism_name: Klebsiella pneumoniae


asm_submitter: Swedish Food Agency

organism_name: Campylobacter jejuni


asm_submitter: UMR 1253, INRA/Agrocampus

organism_name: Enterococcus faecium


asm_submitter: Institut National pour la Recherche Agronomique (FRANCE)

excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Butyricimonas faecalis


excluded_from_refseq: derived from metagenome

organism_name: Alistipes onderdonkii


asm_submitter: EMG

excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Acetatifactor sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Anaerostipes sp.


organism_name: uncultured Bifidobacterium sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: Enterococcus mundtii


asm_submitter: the hong kong university of science and technology

organism_name: uncultured Clostridioides sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Duncaniella sp.


organism_name: uncultured Muribaculum sp.


asm_submitter: NATIONAL VETERINARY INSTITUTE (SVA)

organism_name: Campylobacter coli


asm_submitter: stanford university school of medicine

organism_name: uncultured Fusobacterium sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Megamonas sp.


organism_name: uncultured Lactococcus sp.


organism_name: uncultured Limosilactobacillus sp.


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Levilactobacillus sp.


organism_name: uncultured Mitsuokella sp.


organism_name: uncultured Veillonella sp.


organism_name: uncultured Enterococcus sp.


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Ligilactobacillus sp.


organism_name: uncultured Weissella sp.


organism_name: uncultured Pediococcus sp.


organism_name: uncultured Phascolarctobacterium sp.


organism_name: uncultured Leuconostoc sp.


organism_name: uncultured Secundilactobacillus sp.


organism_name: uncultured Lacticaseibacillus sp.


organism_name: uncultured Prevotella sp.


excluded_from_refseq: RefSeq annotation failed; annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: uncultured Dialister sp.


organism_name: uncultured Lactiplantibacillus sp.


organism_name: uncultured Duodenibacillus sp.


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Mitsuokella sp.


organism_name: uncultured Lactococcus sp.


organism_name: uncultured Enterococcus sp.


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Ligilactobacillus sp.


organism_name: uncultured Weissella sp.


organism_name: uncultured Limosilactobacillus sp.


organism_name: uncultured Escherichia sp.


organism_name: uncultured Lentilactobacillus sp.


organism_name: uncultured Veillonella sp.


organism_name: uncultured Anaerotignum sp.


organism_name: uncultured Klebsiella sp.


organism_name: uncultured Aeromonas sp.


organism_name: uncultured Oxalobacter sp.


organism_name: uncultured Enterobacter sp.


organism_name: uncultured Sellimonas sp.


organism_name: uncultured Aggregatibacter sp.


organism_name: uncultured Sutterella sp.


organism_name: uncultured Prevotellamassilia sp.


organism_name: uncultured Levyella sp.


organism_name: uncultured Haemophilus sp.


organism_name: uncultured Citrobacter sp.


organism_name: uncultured Serratia sp.


organism_name: uncultured Acinetobacter sp.


organism_name: uncultured Escherichia sp.


organism_name: uncultured Dorea sp.


organism_name: uncultured Agathobacter sp.


organism_name: uncultured Anaerotignum sp.


organism_name: uncultured Anaerobutyricum sp.


organism_name: uncultured Mediterraneibacter sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Anaerostipes sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Ruthenibacterium sp.


organism_name: uncultured Enterocloster sp.


organism_name: uncultured Roseburia sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Coprobacter sp.


organism_name: uncultured Lacticaseibacillus sp.


organism_name: uncultured Gemmiger sp.


organism_name: uncultured Cloacibacillus sp.


organism_name: uncultured Agathobaculum sp.


organism_name: uncultured Comamonas sp.


organism_name: uncultured Bilophila sp.


organism_name: uncultured Dysosmobacter sp.


organism_name: uncultured Corynebacterium sp.


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Bifidobacterium sp.


organism_name: uncultured Victivallis sp.


organism_name: uncultured Eggerthella sp.


organism_name: uncultured Senegalimassilia sp.


organism_name: uncultured Actinoplanes sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Helicobacter sp.


organism_name: uncultured Slackia sp.


organism_name: uncultured Treponema sp.


organism_name: uncultured Barnesiella sp.


organism_name: uncultured Flavonifractor sp.


organism_name: uncultured Dysgonomonas sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Parolsenella sp.


organism_name: uncultured Phocaeicola sp.


organism_name: uncultured Butyricimonas sp.


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Odoribacter sp.


organism_name: uncultured Holdemanella sp.


organism_name: uncultured Terrisporobacter sp.


organism_name: uncultured Faecalibacillus sp.


organism_name: uncultured Intestinibacter sp.


organism_name: uncultured Brachyspira sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Methanosphaera sp.


organism_name: uncultured Methanobrevibacter sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Romboutsia sp.


organism_name: uncultured Paraclostridium sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Catenibacterium sp.


organism_name: uncultured Paraprevotella sp.


organism_name: uncultured Bilophila sp.


asm_submitter: UNIVERSITY OF NEW SOUTH WALES

organism_name: Alistipes onderdonkii


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Gemmiger formicilis


organism_name: Odoribacter splanchnicus


organism_name: Roseburia sp. AF02-12


organism_name: Collinsella sp. AF02-46-1


organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)


organism_name: Ruminococcus bromii


organism_name: Methanobrevibacter smithii


organism_name: Dialister invisus


organism_name: Ruminococcus callidus


organism_name: Sutterella wadsworthensis


organism_name: uncultured Anaerostipes sp.


asm_submitter: European Bioinformatics Institute

organism_name: uncultured Arsenicicoccus sp.


organism_name: uncultured Corynebacterium sp.


organism_name: uncultured Dongia sp.


organism_name: uncultured Rhizobium sp.


organism_name: uncultured Cellulosimicrobium sp.


organism_name: uncultured Algoriphagus sp.


organism_name: uncultured Sphingopyxis sp.


organism_name: uncultured Polaribacter sp.


organism_name: uncultured Aeromicrobium sp.


organism_name: uncultured Pseudoalteromonas sp.


organism_name: uncultured Sulfitobacter sp.


asm_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

organism_name: Rhodococcus erythropolis


organism_name: uncultured Glaciecola sp.


organism_name: uncultured Candidatus Nemicrothrix sp.


organism_name: uncultured Microbacterium sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Methylobacterium sp.


organism_name: uncultured Flavobacterium sp.


organism_name: uncultured Albidovulum sp.


organism_name: uncultured Synechococcus sp.


organism_name: uncultured Trichococcus sp.


organism_name: uncultured Arthrobacter sp.


organism_name: Acetobacter syzygii


organism_name: uncultured Acetobacter sp.


organism_name: uncultured Aminobacterium sp.


organism_name: Corynebacterium pseudodiphtheriticum


organism_name: Dolosigranulum pigrum


organism_name: uncultured Treponema sp.


organism_name: uncultured Idiomarina sp.


organism_name: uncultured Devosia sp.


organism_name: uncultured Sphingobacterium sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Cobetia sp.


organism_name: uncultured Allomuricauda sp.


organism_name: uncultured Pseudoalteromonas sp.


organism_name: uncultured Marinobacter sp.


organism_name: uncultured Campylobacter sp.


organism_name: uncultured Prevotella sp.


organism_name: Alteromonas macleodii


organism_name: uncultured Lachnoanaerobaculum sp.


organism_name: uncultured Thermomonospora sp.


excluded_from_refseq: unverified source organism; derived from metagenome


organism_name: uncultured Bifidobacterium sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Flavobacterium sp.


organism_name: uncultured Aminobacterium sp.


organism_name: uncultured Thalassospira sp.


organism_name: Streptococcus infantis


organism_name: uncultured Halomonas sp.


organism_name: Acinetobacter oleivorans


organism_name: uncultured Microbacterium sp.


organism_name: uncultured Tistrella sp.


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Sphingomonas sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Emticicia sp.


organism_name: uncultured Campylobacter sp.


organism_name: uncultured Kingella sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Marinobacter sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Roseivirga sp.


organism_name: uncultured Methylobacterium sp.


organism_name: uncultured Veillonella sp.


organism_name: Cutibacterium avidum


organism_name: uncultured Mogibacterium sp.


organism_name: uncultured Alistipes sp.


organism_name: Streptococcus lutetiensis


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Phascolarctobacterium sp.


organism_name: Bifidobacterium catenulatum


organism_name: uncultured Stomatobaculum sp.


organism_name: Fusobacterium nucleatum


organism_name: uncultured Actinomyces sp.


organism_name: Eisenbergiella massiliensis


organism_name: uncultured Capnocytophaga sp.


organism_name: uncultured Desulfobacter sp.


organism_name: Nitrosomonas nitrosa


organism_name: uncultured Dialister sp.


organism_name: uncultured Citrobacter sp.


organism_name: Bacteroides intestinalis


organism_name: Rothia mucilaginosa


organism_name: Odoribacter splanchnicus


organism_name: uncultured Neisseria sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Peptoniphilus sp.


organism_name: uncultured Gemmobacter sp.


organism_name: uncultured Escherichia sp.


organism_name: Pseudomonas citronellolis


organism_name: uncultured Culturomica sp.


organism_name: Hafnia paralvei


annotation_name: Annotation submitted by NCBI RefSeq

organism_name: Butyricicoccus pullicaecorum


organism_name: uncultured Leuconostoc sp.


organism_name: uncultured Mesotoga sp.


organism_name: uncultured Pantoea sp.


organism_name: Faucicola osloensis


organism_name: uncultured Steroidobacter sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Eubacterium sp.


organism_name: Finegoldia magna


organism_name: uncultured Flavobacterium sp.


organism_name: uncultured Treponema sp.


organism_name: uncultured Megasphaera sp.


organism_name: Hafnia alvei


organism_name: uncultured Acidaminococcus sp.


organism_name: uncultured Mogibacterium sp.


organism_name: uncultured Barnesiella sp.


organism_name: [Clostridium] symbiosum


organism_name: uncultured Parvimonas sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Sphingomonas sp.


organism_name: uncultured Escherichia sp.


organism_name: uncultured Dyadobacter sp.


organism_name: uncultured Stomatobaculum sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Delftia sp.


organism_name: uncultured Microbacterium sp.


organism_name: uncultured Catenibacterium sp.


organism_name: Bifidobacterium dentium


organism_name: uncultured Clostridium sp.


organism_name: Alistipes indistinctus


organism_name: uncultured Ottowia sp.


organism_name: uncultured Rhizobium sp.


organism_name: uncultured Blautia sp.


organism_name: Prevotella histicola


organism_name: uncultured Lachnoanaerobaculum sp.


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Megamonas sp.


organism_name: uncultured Roseburia sp.


organism_name: uncultured Granulicatella sp.


organism_name: uncultured Fusobacterium sp.


organism_name: uncultured Treponema sp.


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Anaerotignum sp.


organism_name: uncultured Selenomonas sp.


organism_name: uncultured Dialister sp.


organism_name: uncultured Capnocytophaga sp.


organism_name: Treponema denticola


organism_name: uncultured Shuttleworthella sp.


organism_name: uncultured Mitsuokella sp.


organism_name: uncultured Mogibacterium sp.


organism_name: Klebsiella planticola


organism_name: uncultured Anaerostipes sp.


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Paenibacillus sp.


organism_name: Bacteroides zoogleoformans


organism_name: uncultured Flavonifractor sp.


organism_name: Methanobrevibacter smithii


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Oscillibacter sp.


organism_name: Lactobacillus johnsonii


organism_name: uncultured Oribacterium sp.


organism_name: uncultured Leuconostoc sp.


organism_name: Lautropia mirabilis


organism_name: Enterobacter mori


organism_name: uncultured Porphyromonas sp.


asm_submitter: inrae toulouse

isolate: Vpy1 symbiont

organism_name: uncultured Paraburkholderia sp.


isolate: Vpyg symbiont


asm_submitter: IHU - Mediterranee Infection

organism_name: Streptococcus sp. Marseille-Q3533


asm_submitter: ANSES

excluded_from_refseq: annotation fails completeness check

organism_name: Salmonella enterica subsp. enterica serovar Dublin


asm_submitter: norwich medical school, university of east anglia, uk

excluded_from_refseq: genome length too large

organism_name: Fenollaria sporofastidiosus


organism_name: Varibaculum prostatecancerukia


organism_name: Neisseria sp. Marseille-Q6792


asm_submitter: RWTH Aachen University Hospital

infraspecific_name: strain=DSM 110983

organism_name: Caniella muris


excluded_from_refseq: contaminated; not used as type

infraspecific_name: strain=DSM 106208

organism_name: Senimuribacter intestinalis


infraspecific_name: strain=DSM 105314


asm_submitter: Biology Centre CAS

organism_name: Allobosea thiooxidans


asm_submitter: marathon study consortium

excluded_from_refseq: RefSeq annotation failed

organism_name: Escherichia coli


asm_submitter: NIH/NHGRI

organism_name: Streptococcus canis


organism_name: uncultured Microbacterium sp.


organism_name: uncultured Corynebacterium sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Kocuria sp.


organism_name: uncultured Flavobacterium sp.


organism_name: uncultured Cutibacterium sp.


organism_name: uncultured Prevotella sp.


organism_name: Faucicola osloensis


organism_name: uncultured Blautia sp.


organism_name: uncultured Micrococcus sp.


organism_name: uncultured Novosphingobium sp.


organism_name: Corynebacterium glyciniphilum


organism_name: uncultured Megasphaera sp.


organism_name: Fastidiosipila sanguinis


organism_name: uncultured Marmoricola sp.


organism_name: uncultured Pseudomonas sp.


organism_name: uncultured Enterobacter sp.


organism_name: uncultured Peptoniphilus sp.


organism_name: uncultured Brevundimonas sp.


organism_name: Dolosigranulum pigrum


organism_name: uncultured Dermacoccus sp.


organism_name: Porphyromonas asaccharolytica


organism_name: Aeromonas media


organism_name: Acinetobacter soli


organism_name: Rothia mucilaginosa


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Corynebacterium sp.


organism_name: uncultured Gordonia sp.


organism_name: uncultured Rheinheimera sp.


organism_name: uncultured Enorma sp.


organism_name: uncultured Prevotella sp.


organism_name: Collinsella ihumii


organism_name: Odoribacter splanchnicus


organism_name: uncultured Phocaeicola sp.


organism_name: Limosilactobacillus mucosae


organism_name: Lactobacillus johnsonii


organism_name: uncultured Ligilactobacillus sp.


organism_name: uncultured Mediterraneibacter sp.


organism_name: uncultured Sellimonas sp.


organism_name: uncultured Agathobaculum sp.


organism_name: uncultured Butyricicoccus sp.


organism_name: uncultured Romboutsia sp.


organism_name: uncultured Acetatifactor sp.


organism_name: uncultured Merdimonas sp.


organism_name: Faecalibacterium gallinarum


organism_name: Intestinimonas timonensis


organism_name: Sutterella parvirubra


excluded_from_refseq: derived from metagenome; genome length too large

organism_name: Megamonas hypermegale


asm_submitter: UTRECHT UNIVERSITY

excluded_from_refseq: contaminated

organism_name: Staphylococcus schleiferi


asm_submitter: STATION BIOLOGIQUE DE ROSCOFF

organism_name: Vibrio aestuarianus


organism_name: Fusobacterium sp. Marseille-Q7035


asm_submitter: DTU-CFB

organism_name: Limosilactobacillus fermentum


asm_submitter: EMG

organism_name: uncultured Methanosphaera sp.


organism_name: Methanobrevibacter gottschalkii


organism_name: Providencia alcalifaciens


organism_name: uncultured Bartonella sp.


organism_name: uncultured Leclercia sp.


organism_name: Melissococcus plutonius


organism_name: uncultured Mitsuokella sp.


organism_name: Catenibacterium mitsuokai


organism_name: uncultured Treponema sp.


excluded_from_refseq: contaminated; unverified source organism

organism_name: Streptococcus bouchesdurhonensis


organism_name: uncultured Clostridium sp.


organism_name: uncultured Dialister sp.


organism_name: uncultured Psychrobacter sp.


organism_name: Plesiomonas shigelloides


organism_name: uncultured Megamonas sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Mogibacterium sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Eubacterium sp.


organism_name: Lactobacillus johnsonii


organism_name: Bifidobacterium thermophilum


organism_name: uncultured Blautia sp.


organism_name: uncultured Eisenbergiella sp.


organism_name: uncultured Mitsuokella sp.


organism_name: Desulfovibrio piger


asm_submitter: Erasmus University Medical Center

organism_name: Staphylococcus aureus


organism_name: uncultured Treponema sp.


asm_submitter: Leiden University Medical Center

excluded_from_refseq: unverified source organism

isolate: Clostridioides difficile

organism_name: Clostridioides difficile


organism_name: Eisenbergiella massiliensis


organism_name: uncultured Veillonella sp.


organism_name: uncultured Fibrobacter sp.


organism_name: Methanobrevibacter smithii


organism_name: uncultured Campylobacter sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Eubacterium sp.


asm_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

organism_name: Sandarakinorhabdus limnophila DSM 17366


organism_name: uncultured Alistipes sp.


organism_name: [Clostridium] symbiosum


organism_name: Streptococcus pasteurianus


organism_name: uncultured Fusobacterium sp.


organism_name: uncultured Faecalicatena sp.


organism_name: Dongia mobilis


organism_name: uncultured Treponema sp.


organism_name: uncultured Phascolarctobacterium sp.


organism_name: uncultured Clostridium sp.


organism_name: Catenibacterium mitsuokai


organism_name: uncultured Mitsuokella sp.


organism_name: uncultured Arsenicibacter sp.


organism_name: Aeromonas jandaei


organism_name: uncultured Elizabethkingia sp.


organism_name: Pseudomonas mosselii


organism_name: Plesiomonas shigelloides


organism_name: uncultured Roseateles sp.


organism_name: uncultured Mycolicibacterium sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Alistipes sp.


organism_name: Bacteroides pyogenes


organism_name: uncultured Dialister sp.


organism_name: uncultured Campylobacter sp.


organism_name: uncultured Treponema sp.


organism_name: Actinobacillus porcinus


organism_name: Desulfovibrio piger


organism_name: Mammaliicoccus sp. Marseille-Q6498


organism_name: Neobacillus sp. Marseille-Q6967


asm_submitter: UNIVERSITY COLLEGE LONDON

excluded_from_refseq: contaminated; from large multi-isolate project

isolate: Streptococcus mitis

organism_name: Streptococcus mitis


excluded_from_refseq: from large multi-isolate project


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Corynebacterium sp.


organism_name: uncultured Varibaculum sp.


organism_name: uncultured Weeksella sp.


organism_name: uncultured Cutibacterium sp.


organism_name: uncultured Porphyromonas sp.


organism_name: Oligella urethralis


organism_name: uncultured Acidocella sp.


organism_name: uncultured Psychrobacter sp.


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Arsenicicoccus sp.


organism_name: uncultured Pseudomonas sp.


organism_name: Catenibacterium mitsuokai


organism_name: Parasutterella excrementihominis


organism_name: uncultured Methanobrevibacter sp.


organism_name: uncultured Methanosphaera sp.


organism_name: uncultured Clostridium sp.


organism_name: Bradyrhizobium diazoefficiens


organism_name: uncultured Prevotella sp.


organism_name: uncultured Anaerostipes sp.


organism_name: Methanobrevibacter smithii


excluded_from_refseq: RefSeq annotation failed; annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Mogibacterium sp.


organism_name: uncultured Oscillibacter sp.


excluded_from_refseq: derived from metagenome


asm_submitter: Max Planck Institute for Marine Microbiology

isolate: M. thermolithotrophicus DSM 2095

organism_name: Methanothermococcus thermolithotrophicus DSM 2095


excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Neokomagataea sp.


organism_name: Snodgrassella alvi


organism_name: uncultured Bartonella sp.


organism_name: uncultured Citrobacter sp.


organism_name: uncultured Fructobacillus sp.


organism_name: Melissococcus plutonius


organism_name: Gilliamella apicola


organism_name: Hafnia alvei


organism_name: Acinetobacter johnsonii


excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small

organism_name: Bifidobacterium indicum


organism_name: Acinetobacter tandoii


excluded_from_refseq: unverified source organism; annotation fails MAG completeness check; derived from metagenome; genome length too small


organism_name: uncultured Flavobacterium sp.


organism_name: uncultured Fluviicola sp.


asm_submitter: UNIVERSITY OF COPENHAGEN

organism_name: Photobacterium phosphoreum


organism_name: uncultured Bdellovibrio sp.


organism_name: uncultured Bacillus sp.


organism_name: uncultured Nitrososphaera sp.


organism_name: uncultured Sphingomonas sp.


organism_name: uncultured Pseudomonas sp.


organism_name: uncultured Bartonella sp.


organism_name: Alcaligenes faecalis


organism_name: uncultured Pseudogulbenkiania sp.


organism_name: uncultured Shinella sp.


organism_name: uncultured Agrobacterium sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Lacibacter sp.


organism_name: uncultured Methylotenera sp.


organism_name: uncultured Pedobacter sp.


organism_name: Asticcacaulis taihuensis


organism_name: uncultured Chitinophaga sp.


organism_name: uncultured Devosia sp.


organism_name: uncultured Sphingobacterium sp.


organism_name: uncultured Mucilaginibacter sp.


organism_name: uncultured Flavobacterium sp.


organism_name: Comamonas thiooxydans


organism_name: uncultured Sphingomonas sp.


organism_name: Pseudomonas corrugata


organism_name: uncultured Caldimonas sp.


organism_name: uncultured Azospirillum sp.


organism_name: Pedobacter kyonggii


organism_name: Snodgrassella alvi


organism_name: Hafnia alvei


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: uncultured Bartonella sp.


organism_name: uncultured Sediminibacterium sp.


organism_name: uncultured Acidovorax sp.


organism_name: uncultured Massilia sp.


organism_name: uncultured Bifidobacterium sp.


organism_name: Bifidobacterium indicum


organism_name: uncultured Microbacterium sp.


organism_name: Gilliamella apicola


organism_name: Enterobacter soli


organism_name: uncultured Kosakonia sp.


organism_name: uncultured Delftia sp.


organism_name: uncultured Roseateles sp.


organism_name: uncultured Limnobacter sp.


organism_name: uncultured Flavobacterium sp.


organism_name: uncultured Dyadobacter sp.


organism_name: uncultured Anaerostipes sp.


organism_name: uncultured Agathobaculum sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Megamonas sp.


organism_name: uncultured Butyricicoccus sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Anaerotruncus colihominis


organism_name: Odoribacter splanchnicus


organism_name: uncultured Bifidobacterium sp.


organism_name: uncultured Barnesiella sp.


organism_name: uncultured Bacteroides sp.


asm_submitter: EMBL-EBI

organism_name: uncultured Mitsuokella sp.


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Allobaculum sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Eubacterium sp.


organism_name: Snodgrassella alvi


organism_name: uncultured Pseudoxanthomonas sp.


organism_name: uncultured Nocardioides sp.


organism_name: uncultured Pseudomonas sp.


organism_name: uncultured Actinotalea sp.


organism_name: uncultured Acidovorax sp.


organism_name: uncultured Roseateles sp.


organism_name: uncultured Marinobacter sp.


organism_name: uncultured Streptomyces sp.


organism_name: uncultured Halomonas sp.


asm_submitter: Uppsala University

organism_name: Apilactobacillus kunkeei


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Sneathia sp.


asm_submitter: IHU - Mediterranee Infection

organism_name: Chryseobacterium sp. Marseille-Q5410


organism_name: Neisseria sp. Marseille-Q5346


organism_name: Streptococcus sp. Marseille-Q6470


asm_submitter: UNIVERSIDAD DE JAEN

organism_name: Escherichia coli


organism_name: uncultured Corynebacterium sp.


organism_name: uncultured Peptostreptococcus sp.


organism_name: uncultured Parvimonas sp.


organism_name: Parasutterella excrementihominis


organism_name: uncultured Mitsuokella sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Catenibacterium sp.


excluded_from_refseq: contaminated; derived from metagenome


organism_name: uncultured Blautia sp.


asm_submitter: iai - institu des agents infectieux

excluded_from_refseq: annotation fails completeness check

organism_name: Staphylococcus aureus


organism_name: uncultured Oscillibacter sp.


organism_name: Photobacterium phosphoreum


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Sneathia sp.


organism_name: uncultured Bacteroides sp.


asm_submitter: NATIONAL UNIVERSITY OF IRELAND, GALWAY


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Marvinbryantia sp.


organism_name: Bacteroides intestinalis


organism_name: uncultured Allobaculum sp.


organism_name: Plesiomonas shigelloides


organism_name: uncultured Citrobacter sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: Lactobacillus johnsonii


organism_name: uncultured Peptostreptococcus sp.


organism_name: Parasutterella excrementihominis


organism_name: uncultured Prevotella sp.


asm_submitter: center for biotechnology (cebitec), bielefeld university

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Pseudomonas sp. MM223


organism_name: Pseudomonas sp. MM221


organism_name: Anaerotruncus colihominis


organism_name: uncultured Butyrivibrio sp.


organism_name: uncultured Bacteroides sp.


asm_submitter: Faculty of Health Sciences

organism_name: Brucella melitensis


organism_name: Brucella melitensis B115


organism_name: Helcococcus sueciensis


organism_name: uncultured Sneathia sp.


organism_name: Peptostreptococcus anaerobius


organism_name: uncultured Varibaculum sp.


organism_name: uncultured Corynebacterium sp.


organism_name: Corynebacterium striatum


excluded_from_refseq: annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Megasphaera sp.


asm_submitter: UNIVERSITY OF VIENNA

organism_name: uncultured Allomuricauda sp.


organism_name: uncultured Roseovarius sp.


organism_name: uncultured Sneathiella sp.


organism_name: uncultured Maritimibacter sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Paracoccus sp.


asm_submitter: UNIVERSITY OF GLASGOW

organism_name: Streptococcus agalactiae


asm_submitter: EMG

organism_name: uncultured Prevotella sp.


organism_name: uncultured Citrobacter sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Phascolarctobacterium sp.


organism_name: uncultured Oscillibacter sp.


organism_name: Bacteroides intestinalis


organism_name: Globicatella sulfidifaciens


organism_name: Faecalibaculum rodentium


organism_name: uncultured Lactobacillus sp.


asm_submitter: UNIVERSITY HOHENHEIM

organism_name: Clostridium butyricum


organism_name: Turicimonas muris


asm_submitter: QLD Health

organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


asm_submitter: marine college, shandong university

organism_name: uncultured Halomonas sp.


organism_name: uncultured Allomuricauda sp.


organism_name: uncultured Psychrobacter sp.


organism_name: uncultured Nocardioides sp.


organism_name: uncultured Psychroserpens sp.


organism_name: uncultured Roseovarius sp.


organism_name: uncultured Ornithinimicrobium sp.


organism_name: uncultured Draconibacterium sp.


organism_name: uncultured Pseudoalteromonas sp.


organism_name: uncultured Micrococcus sp.


organism_name: uncultured Christiangramia sp.


organism_name: uncultured Acinetobacter sp.


organism_name: uncultured Polaribacter sp.


organism_name: uncultured Croceitalea sp.


organism_name: uncultured Paraglaciecola sp.


organism_name: uncultured Shimia sp.


organism_name: uncultured Roseibium sp.


organism_name: uncultured Olleya sp.


organism_name: uncultured Zobellia sp.


organism_name: Marinifilum sediminis


organism_name: uncultured Allomuricauda sp.


organism_name: uncultured Carboxylicivirga sp.


organism_name: uncultured Allobacillus sp.


organism_name: uncultured Erythrobacter sp.


organism_name: uncultured Persicobacter sp.


organism_name: uncultured Tenacibaculum sp.


organism_name: uncultured Halomonas sp.


organism_name: uncultured Hoeflea sp.


organism_name: uncultured Psychrobacter sp.


organism_name: uncultured Salegentibacter sp.


organism_name: uncultured Brevibacillus sp.


organism_name: uncultured Aliiroseovarius sp.


organism_name: uncultured Altererythrobacter sp.


organism_name: uncultured Christiangramia sp.


organism_name: Brumimicrobium ulvae


organism_name: uncultured Alistipes sp.


organism_name: Eisenbergiella massiliensis


asm_submitter: stanford university school of medicine

organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Dorea sp.


organism_name: uncultured Agathobaculum sp.


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Anaerobutyricum sp.


organism_name: uncultured Catenibacterium sp.


organism_name: uncultured Kosakonia sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Prevotella sp.


asm_submitter: Institut National pour la Recherche Agronomique (FRANCE)

organism_name: Odoribacter splanchnicus


organism_name: uncultured Dysosmobacter sp.


organism_name: uncultured Halomonas sp.


organism_name: uncultured Flavobacterium sp.


organism_name: Providencia huaxiensis


organism_name: uncultured Blautia sp.


organism_name: uncultured Alistipes sp.


organism_name: Vagococcus fluvialis


organism_name: uncultured Lachnoclostridium sp.


organism_name: [Clostridium] symbiosum


organism_name: uncultured Flavonifractor sp.


organism_name: Aerococcus urinaeequi


organism_name: uncultured Mesorhizobium sp.


organism_name: uncultured Acetatifactor sp.


asm_submitter: Universitaetsklinikum Freiburg

organism_name: Klebsiella pneumoniae


organism_name: Alistipes onderdonkii


excluded_from_refseq: contaminated

organism_name: Escherichia coli


excluded_from_refseq: RefSeq annotation failed


asm_submitter: Ghent University

infraspecific_name: strain=LMG 32857

organism_name: Hafnia alvei


infraspecific_name: strain=LMG 32860


organism_name: uncultured Ruminococcus sp.


organism_name: Ruminococcus bromii


organism_name: uncultured Methanosphaera sp.


organism_name: Parasutterella excrementihominis


organism_name: uncultured Prevotella sp.


organism_name: uncultured Mitsuokella sp.


organism_name: uncultured Phascolarctobacterium sp.


organism_name: uncultured Oscillibacter sp.


organism_name: Alistipes communis


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Acidaminococcus sp.


asm_submitter: UNIVERSITY OF CAMBRIDGE


organism_name: Paramuribaculum intestinale


organism_name: uncultured Muribaculum sp.


organism_name: uncultured Duncaniella sp.


organism_name: uncultured Acetatifactor sp.


organism_name: uncultured Alistipes sp.


organism_name: Bacteroides intestinalis


organism_name: uncultured Lactobacillus sp.


organism_name: Lactobacillus intestinalis


organism_name: uncultured Escherichia sp.


organism_name: Enterocloster clostridioformis


organism_name: uncultured Prevotella sp.


organism_name: uncultured Schaedlerella sp.


organism_name: uncultured Phocaeicola sp.


organism_name: Acutalibacter muris


organism_name: uncultured Oscillibacter sp.


excluded_from_refseq: annotation fails completeness check; derived from metagenome


organism_name: Faecalibaculum rodentium


organism_name: uncultured Bacteroides sp.


organism_name: Paramuribaculum intestinale


organism_name: uncultured Muribaculum sp.


organism_name: uncultured Duncaniella sp.


organism_name: uncultured Acetatifactor sp.


organism_name: uncultured Alistipes sp.


organism_name: Bacteroides intestinalis


excluded_from_refseq: contaminated; annotation fails MAG completeness check; derived from metagenome

organism_name: Dubosiella newyorkensis


organism_name: uncultured Parasutterella sp.


organism_name: uncultured Lactobacillus sp.


organism_name: Lactobacillus intestinalis


organism_name: uncultured Prevotella sp.


organism_name: uncultured Schaedlerella sp.


organism_name: uncultured Phocaeicola sp.


organism_name: uncultured Escherichia sp.


organism_name: uncultured Allobaculum sp.


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Dubosiella sp.


organism_name: Paramuribaculum intestinale


organism_name: uncultured Bilophila sp.


organism_name: uncultured Muribaculum sp.


organism_name: uncultured Oscillibacter sp.


organism_name: Enterocloster clostridioformis


organism_name: uncultured Acetatifactor sp.


organism_name: uncultured Duncaniella sp.


organism_name: uncultured Anaerostipes sp.


organism_name: uncultured Adlercreutzia sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Schaedlerella sp.


organism_name: uncultured Phocaeicola sp.


organism_name: uncultured Escherichia sp.


organism_name: Parasutterella excrementihominis


organism_name: Bacteroides intestinalis


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small


organism_name: uncultured Akkermansia sp.


organism_name: Paramuribaculum intestinale


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Muribaculum sp.


organism_name: uncultured Parasutterella sp.


asm_submitter: ngs competence center tuebingen ncct

excluded_from_refseq: from large multi-isolate project

organism_name: Pseudomonas aeruginosa


excluded_from_refseq: derived from metagenome


excluded_from_refseq: RefSeq annotation failed; derived from metagenome


organism_name: uncultured Dubosiella sp.


organism_name: uncultured Acetatifactor sp.


organism_name: Enterocloster clostridioformis


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Duncaniella sp.


organism_name: uncultured Enterobacter sp.


organism_name: Anaerotruncus colihominis


organism_name: Helicobacter typhlonius


asm_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


organism_name: uncultured Lactobacillus sp.


asm_submitter: ANSES Ploufragan

organism_name: Escherichia coli


asm_submitter: addis ababa university

organism_name: uncultured Clostridium sp.


organism_name: uncultured Fusobacterium sp.


organism_name: uncultured Bifidobacterium sp.


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Megamonas sp.


organism_name: uncultured Veillonella sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Bilophila sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Parasutterella sp.


organism_name: uncultured Muribaculum sp.


organism_name: Faecalibaculum rodentium


organism_name: Bacteroides intestinalis


organism_name: uncultured Acetatifactor sp.


organism_name: Helicobacter typhlonius


organism_name: [Clostridium] clostridioforme CAG:132


organism_name: uncultured Lactobacillus sp.


organism_name: uncultured Dubosiella sp.


organism_name: Mammaliicoccus lentus


organism_name: uncultured Prevotella sp.


organism_name: uncultured Akkermansia sp.


organism_name: uncultured Bacteroides sp.


organism_name: Duncaniella freteri


organism_name: Turicimonas muris


organism_name: uncultured Reyranella sp.


organism_name: uncultured Oscillibacter sp.


asm_submitter: IHU - Mediterranee Infection

organism_name: Mobiluncus massiliensis


asm_submitter: National Key Laboratory of Agricultural Microbiology

organism_name: uncultured Pseudomonas sp.


organism_name: uncultured Allobaculum sp.


organism_name: uncultured Alistipes sp.


asm_submitter: Geneva University Hospitals


organism_name: uncultured Antarctobacter sp.


organism_name: uncultured Sulfitobacter sp.


organism_name: uncultured Spongiibacter sp.


organism_name: uncultured Rhodococcus sp.


organism_name: Alteromonas macleodii


organism_name: uncultured Pseudoalteromonas sp.


organism_name: uncultured Halomonas sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Salipiger sp.


organism_name: uncultured Marinobacter sp.


organism_name: uncultured Psychrobacter sp.


organism_name: uncultured Idiomarina sp.


organism_name: uncultured Sphingobium sp.


asm_submitter: Brown University

organism_name: uncultured Acetatifactor sp.


asm_submitter: Shanghai Jiao Tong University Affiliated Six People's Hospital


asm_submitter: Beijing Genome Institute

organism_name: uncultured Oscillibacter sp.


asm_submitter: dmf

organism_name: Pseudomonas aeruginosa


asm_submitter: Philipps-Universitat Marburg Center for Synthetic Microbiology (Synmikro) Becker lab

isolate: Stool culture

organism_name: Shigella sonnei


asm_submitter: Macalester College


asm_submitter: AUSTRALIAN NATIONAL UNIVERSITY


asm_submitter: Institut Pasteur


asm_submitter: INDIAN INSTITUTE OF SCIENCE EDUCATION AND RESEARCH, BHOPAL


asm_submitter: WAGENINGEN UNIVERSITY


asm_submitter: WELLCOME SANGER INSTITUTE


asm_submitter: EMG


organism_name: uncultured Porphyromonas sp.


asm_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

organism_name: Clostridium perfringens


asm_submitter: National Cancer Institute - NIH


asm_submitter: Cincinnati Childrens Hospital

organism_name: Ruminococcus bromii


asm_submitter: ncipd


organism_name: uncultured Sphingomonas sp.


organism_name: uncultured Erythrobacter sp.


organism_name: Anaerobutyricum hallii


organism_name: Catenibacterium mitsuokai


organism_name: uncultured Blautia sp.


organism_name: Methanobrevibacter smithii


organism_name: Alistipes communis


organism_name: Bifidobacterium catenulatum


organism_name: Alistipes shahii


organism_name: Odoribacter splanchnicus


organism_name: uncultured Anaerostipes sp.


organism_name: Bifidobacterium dentium


organism_name: Rothia mucilaginosa


organism_name: Acidaminococcus intestini


organism_name: uncultured Prevotella sp.


organism_name: Alistipes onderdonkii


organism_name: Ruminococcus bromii


organism_name: Ruthenibacterium lactatiformans


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Adlercreutzia sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Romboutsia sp.


organism_name: Alistipes communis


organism_name: uncultured Bacteroides sp.


organism_name: Bacteroides intestinalis


organism_name: uncultured Oscillibacter sp.


organism_name: Catenibacterium mitsuokai


organism_name: uncultured Eubacterium sp.


organism_name: Limosilactobacillus mucosae


organism_name: Methanobrevibacter smithii


organism_name: uncultured Prevotella sp.


organism_name: Streptococcus pasteurianus


organism_name: Alistipes onderdonkii


organism_name: uncultured Alistipes sp.


organism_name: uncultured Ruminococcus sp.


organism_name: Hafnia paralvei


organism_name: Odoribacter splanchnicus


organism_name: Butyricicoccus pullicaecorum


organism_name: Phocaeicola plebeius


organism_name: Ruthenibacterium lactatiformans


organism_name: Enterocloster clostridioformis


organism_name: Bifidobacterium catenulatum


organism_name: uncultured Blautia sp.


organism_name: Streptococcus lutetiensis


organism_name: Ruminococcus bromii


organism_name: Bacteroides intestinalis


organism_name: Anaerobutyricum hallii


organism_name: uncultured Prevotella sp.


organism_name: uncultured Eubacterium sp.


excluded_from_refseq: RefSeq annotation failed; annotation fails MAG completeness check; annotation fails completeness check; derived from metagenome

organism_name: uncultured Dialister sp.


organism_name: Alistipes shahii


organism_name: uncultured Marvinbryantia sp.


organism_name: Methanobrevibacter smithii


organism_name: Catenibacterium mitsuokai


organism_name: uncultured Alistipes sp.


organism_name: Limosilactobacillus mucosae


organism_name: uncultured Ruminococcus sp.


organism_name: Bifidobacterium dentium


organism_name: Streptococcus pasteurianus


organism_name: Odoribacter splanchnicus


organism_name: Alistipes onderdonkii


organism_name: uncultured Oscillibacter sp.


organism_name: Phocaeicola coprocola


organism_name: uncultured Blautia sp.


organism_name: Enterocloster clostridioformis


organism_name: uncultured Prevotella sp.


organism_name: Streptococcus lutetiensis


organism_name: Holdemanella biformis


organism_name: uncultured Enterobacter sp.


organism_name: Hafnia alvei


organism_name: Anaerobutyricum hallii


organism_name: Bifidobacterium catenulatum


organism_name: uncultured Alistipes sp.


organism_name: Limosilactobacillus mucosae


organism_name: uncultured Hydrogenophaga sp.


organism_name: Ruminococcus bromii


organism_name: Paraprevotella clara


organism_name: uncultured Ruminococcus sp.


organism_name: Odoribacter splanchnicus


organism_name: Alistipes onderdonkii


organism_name: uncultured Romboutsia sp.


organism_name: uncultured Cellulosilyticum sp.


organism_name: Bacteroides intestinalis


organism_name: uncultured Blautia sp.


organism_name: uncultured Mitsuokella sp.


organism_name: uncultured Prevotella sp.


organism_name: Phocaeicola coprophilus


organism_name: Alistipes shahii


organism_name: Methanobrevibacter arboriphilus


organism_name: uncultured Marvinbryantia sp.


organism_name: Streptococcus lutetiensis


organism_name: uncultured Dialister sp.


organism_name: Ruminococcus bromii


organism_name: Clostridium paraputrificum


organism_name: Catenibacterium mitsuokai


organism_name: uncultured Ruminococcus sp.


organism_name: Methanobrevibacter smithii


organism_name: Odoribacter splanchnicus


organism_name: Anaerobutyricum hallii


organism_name: uncultured Romboutsia sp.


organism_name: Enterocloster clostridioformis


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Adlercreutzia sp.


organism_name: Alistipes shahii


organism_name: Hafnia alvei


organism_name: Hafnia paralvei


organism_name: uncultured Eubacterium sp.


organism_name: Phocaeicola coprocola


organism_name: Alistipes onderdonkii


organism_name: Ruminococcus bromii


organism_name: uncultured Clostridium sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Veillonella sp.


organism_name: Plesiomonas shigelloides


organism_name: uncultured Selenomonas sp.


organism_name: Catenibacterium mitsuokai


organism_name: Odoribacter splanchnicus


organism_name: Streptococcus pasteurianus


organism_name: Enterocloster clostridioformis


organism_name: Streptococcus lutetiensis


organism_name: uncultured Blautia sp.


organism_name: Bifidobacterium dentium


organism_name: Clostridium paraputrificum


organism_name: Butyricicoccus pullicaecorum


organism_name: uncultured Romboutsia sp.


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Megasphaera sp.


organism_name: Methanobrevibacter smithii


excluded_from_refseq: genome length too small

organism_name: Mediterraneibacter torques


organism_name: uncultured Prevotella sp.


organism_name: uncultured Bifidobacterium sp.


organism_name: uncultured Ruminococcus sp.


organism_name: Ruthenibacterium lactatiformans


organism_name: Rothia mucilaginosa


organism_name: Hafnia paralvei


organism_name: uncultured Clostridium sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Alistipes sp.


organism_name: Catenibacterium mitsuokai


organism_name: Alistipes shahii


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: Roseburia inulinivorans


organism_name: Anaerobutyricum hallii


organism_name: Limosilactobacillus mucosae


organism_name: Streptococcus pasteurianus


organism_name: Bifidobacterium dentium


organism_name: Bacteroides intestinalis


organism_name: uncultured Blautia sp.


organism_name: uncultured Romboutsia sp.


organism_name: Methanobrevibacter smithii


organism_name: uncultured Prevotella sp.


organism_name: uncultured Cellulosilyticum sp.


organism_name: Ruminococcus bromii


organism_name: uncultured Oscillibacter sp.


organism_name: Alistipes onderdonkii


organism_name: Streptococcus lutetiensis


organism_name: uncultured Clostridium sp.


organism_name: Odoribacter splanchnicus


organism_name: uncultured Butyricimonas sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Sutterella sp.


asm_submitter: university of tokyo

organism_name: Klebsiella pneumoniae


asm_submitter: King Abdullah University of Science and Technology

organism_name: Pseudoalteromonas galatheae


organism_name: Escherichia coli


asm_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

infraspecific_name: strain=Agrobacterium radiobacter DSM 30147

organism_name: Agrobacterium radiobacter DSM 30147


organism_name: Parabacteroides distasonis


organism_name: Collinsella aerofaciens


organism_name: Bacteroides finegoldii


organism_name: uncultured Roseateles sp.


organism_name: uncultured Flavobacterium sp.


organism_name: Halomonas sp. BMC6


organism_name: Sutcliffiella sp. BMC8


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Actinomyces sp.


organism_name: Prevotella pallens


organism_name: uncultured Prevotella sp.


organism_name: uncultured Brevundimonas sp.


organism_name: uncultured Gellertiella sp.


asm_submitter: UNIVERSITY OF ZURICH

organism_name: uncultured Rhodoferax sp.


organism_name: uncultured Ottowia sp.


excluded_from_refseq: unverified source organism; annotation fails MAG completeness check; derived from metagenome

organism_name: Schaalia odontolytica


organism_name: uncultured Undibacterium sp.


organism_name: uncultured Limnohabitans sp.


organism_name: uncultured Sphingorhabdus sp.


organism_name: uncultured Capnocytophaga sp.


organism_name: uncultured Neisseria sp.


organism_name: uncultured Flavobacterium sp.


organism_name: uncultured Deefgea sp.


organism_name: Rothia mucilaginosa


organism_name: uncultured Aggregatibacter sp.


excluded_from_refseq: unverified source organism; RefSeq annotation failed; derived from metagenome


organism_name: uncultured Sphingomonas sp.


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Alloprevotella sp.


organism_name: uncultured Polynucleobacter sp.


organism_name: Bifidobacterium dentium


organism_name: Prevotella bivia


organism_name: uncultured Duganella sp.


organism_name: uncultured Aquabacterium sp.


organism_name: uncultured Undibacterium sp.


excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Peptoniphilus grossensis


organism_name: Peptoniphilus harei


organism_name: Ezakiella coagulans


organism_name: uncultured Limnohabitans sp.


organism_name: uncultured Bradyrhizobium sp.


organism_name: uncultured Flavobacterium sp.


organism_name: uncultured Rhodoferax sp.


organism_name: uncultured Ralstonia sp.


organism_name: uncultured Pseudomonas sp.


organism_name: uncultured Albidiferax sp.


organism_name: uncultured Sphingomonas sp.


organism_name: Porphyromonas uenonis


organism_name: uncultured Pedobacter sp.


organism_name: uncultured Sandarakinorhabdus sp.


organism_name: uncultured Enterobacter sp.


organism_name: uncultured Deefgea sp.


organism_name: uncultured Sphingorhabdus sp.


organism_name: uncultured Undibacterium sp.


organism_name: uncultured Duganella sp.


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Neisseria sp.


organism_name: Prevotella pallens


organism_name: uncultured Rhizobium sp.


organism_name: uncultured Brevundimonas sp.


organism_name: uncultured Lachnoanaerobaculum sp.


organism_name: uncultured Prevotella sp.


organism_name: Rothia mucilaginosa


organism_name: uncultured Psychrobacter sp.


organism_name: uncultured Campylobacter sp.


organism_name: Pseudomonas fragi


organism_name: uncultured Leptotrichia sp.


organism_name: uncultured Haemophilus sp.


organism_name: uncultured Aggregatibacter sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Faucicola osloensis


organism_name: uncultured Sphingomonas sp.


organism_name: Acinetobacter lwoffii


organism_name: uncultured Lysinibacillus sp.


organism_name: Streptococcus infantis


organism_name: uncultured Devosia sp.


organism_name: uncultured Rhodococcus sp.


organism_name: Microbacterium lemovicicum


organism_name: uncultured Chryseobacterium sp.


organism_name: uncultured Selenomonas sp.


organism_name: uncultured Shinella sp.


organism_name: Rothia mucilaginosa


organism_name: uncultured Pseudomonas sp.


organism_name: uncultured Roseococcus sp.


organism_name: uncultured Campylobacter sp.


organism_name: uncultured Microbacterium sp.


organism_name: uncultured Brevundimonas sp.


organism_name: Serratia proteamaculans


organism_name: Cytobacillus firmus


organism_name: uncultured Prevotella sp.


organism_name: uncultured Capnocytophaga sp.


organism_name: Pseudomonas fragi


organism_name: uncultured Moellerella sp.


organism_name: Kocuria rhizophila


organism_name: uncultured Moraxella sp.


organism_name: uncultured Achromobacter sp.


organism_name: uncultured Kingella sp.


organism_name: uncultured Pantoea sp.


organism_name: uncultured Peptostreptococcus sp.


organism_name: uncultured Erwinia sp.


organism_name: uncultured Pseudomonas sp.


organism_name: uncultured Comamonas sp.


organism_name: uncultured Acinetobacter sp.


organism_name: uncultured Neisseria sp.


organism_name: uncultured Enterobacter sp.


organism_name: Schaalia odontolytica


organism_name: uncultured Sphingomonas sp.


organism_name: uncultured Serratia sp.


organism_name: uncultured Noviherbaspirillum sp.


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Brevundimonas sp.


organism_name: uncultured Campylobacter sp.


organism_name: uncultured Novosphingobium sp.


organism_name: uncultured Lachnoanaerobaculum sp.


organism_name: Pseudomonas lundensis


organism_name: uncultured Clostridium sp.


organism_name: uncultured Granulicatella sp.


organism_name: uncultured Pantoea sp.


organism_name: Rothia mucilaginosa


organism_name: uncultured Cardiobacterium sp.


organism_name: uncultured Lelliottia sp.


organism_name: Klebsiella planticola


organism_name: uncultured Pseudomonas sp.


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Brevundimonas diminuta


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Sphingobacterium sp.


organism_name: uncultured Aminipila sp.


organism_name: uncultured Leptotrichia sp.


organism_name: uncultured Neisseria sp.


organism_name: uncultured Campylobacter sp.


organism_name: uncultured Moraxella sp.


organism_name: uncultured Kosakonia sp.


organism_name: uncultured Sphingomonas sp.


organism_name: Schaalia odontolytica


organism_name: uncultured Fusobacterium sp.


organism_name: uncultured Ottowia sp.


organism_name: uncultured Aggregatibacter sp.


organism_name: uncultured Porphyromonas sp.


organism_name: Rothia mucilaginosa


organism_name: uncultured Pseudomonas sp.


organism_name: uncultured Comamonas sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Peptostreptococcus sp.


organism_name: Stenotrophomonas rhizophila


organism_name: uncultured Chryseobacterium sp.


organism_name: uncultured Capnocytophaga sp.


organism_name: Acinetobacter soli


organism_name: uncultured Acinetobacter sp.


organism_name: uncultured Lachnoanaerobaculum sp.


organism_name: uncultured Campylobacter sp.


organism_name: Comamonas thiooxydans


organism_name: Klebsiella terrigena


organism_name: uncultured Brevundimonas sp.


organism_name: Mammaliicoccus lentus


organism_name: uncultured Actinomyces sp.


organism_name: Rothia mucilaginosa


organism_name: uncultured Pantoea sp.


organism_name: Hafnia paralvei


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Empedobacter sp.


organism_name: uncultured Pseudomonas sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Selenomonas sp.


organism_name: uncultured Kingella sp.


organism_name: Carnobacterium maltaromaticum


organism_name: uncultured Massilia sp.


organism_name: uncultured Achromobacter sp.


organism_name: uncultured Enterobacter sp.


organism_name: uncultured Janthinobacterium sp.


organism_name: uncultured Brevundimonas sp.


organism_name: uncultured Campylobacter sp.


organism_name: uncultured Capnocytophaga sp.


organism_name: uncultured Rahnella sp.


organism_name: uncultured Fusobacterium sp.


organism_name: uncultured Pantoea sp.


organism_name: Rothia mucilaginosa


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Ottowia sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Alloprevotella sp.


organism_name: Schaalia odontolytica


organism_name: uncultured Neisseria sp.


organism_name: Kingella denitrificans


organism_name: uncultured Abiotrophia sp.


organism_name: uncultured Peptostreptococcus sp.


organism_name: uncultured Aggregatibacter sp.


organism_name: Bifidobacterium dentium


organism_name: uncultured Lachnoanaerobaculum sp.


organism_name: uncultured Selenomonas sp.


organism_name: uncultured Actinomyces sp.


organism_name: uncultured Haemophilus sp.


excluded_from_refseq: RefSeq annotation failed; annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Stomatobaculum sp.


organism_name: Rothia mucilaginosa


organism_name: uncultured Capnocytophaga sp.


organism_name: Actinomyces oris


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Catonella sp.


organism_name: uncultured Actinobacillus sp.


organism_name: uncultured Neisseria sp.


organism_name: uncultured Oribacterium sp.


organism_name: uncultured Prevotella sp.


organism_name: Hoylesella enoeca


organism_name: uncultured Treponema sp.


organism_name: Segatella oris


organism_name: uncultured Mogibacterium sp.


organism_name: uncultured Olsenella sp.


organism_name: uncultured Aggregatibacter sp.


organism_name: Shuttleworthella satelles


organism_name: uncultured Cupriavidus sp.


organism_name: uncultured Selenomonas sp.


organism_name: uncultured Fretibacterium sp.


organism_name: uncultured Campylobacter sp.


organism_name: Arachnia propionica


organism_name: Dialister invisus


organism_name: Olegusella massiliensis


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Haemophilus sp.


organism_name: uncultured Corynebacterium sp.


organism_name: Rothia mucilaginosa


organism_name: uncultured Prevotella sp.


organism_name: uncultured Actinomyces sp.


organism_name: Schaalia odontolytica


organism_name: uncultured Capnocytophaga sp.


organism_name: uncultured Neisseria sp.


organism_name: Treponema denticola


organism_name: uncultured Lachnoanaerobaculum sp.


organism_name: uncultured Treponema sp.


organism_name: uncultured Aggregatibacter sp.


organism_name: uncultured Selenomonas sp.


organism_name: uncultured Cardiobacterium sp.


organism_name: uncultured Peptostreptococcus sp.


organism_name: uncultured Campylobacter sp.


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Leptotrichia sp.


organism_name: uncultured Haemophilus sp.


organism_name: uncultured Rothia sp.


organism_name: Actinomyces oris


organism_name: Bifidobacterium dentium


organism_name: uncultured Stomatobaculum sp.


organism_name: uncultured Capnocytophaga sp.


organism_name: uncultured Oribacterium sp.


organism_name: Schaalia odontolytica


organism_name: uncultured Prevotella sp.


organism_name: Rothia mucilaginosa


organism_name: uncultured Neisseria sp.


organism_name: uncultured Selenomonas sp.


organism_name: Pseudodesulfovibrio indicus


organism_name: uncultured Cohaesibacter sp.


organism_name: Desulfuromonas acetoxidans


organism_name: uncultured Tolumonas sp.


asm_submitter: Institut National pour la Recherche Agronomique (FRANCE)

organism_name: uncultured Blautia sp.


organism_name: uncultured Dysosmobacter sp.


organism_name: uncultured Fusobacterium sp.


organism_name: uncultured Flavonifractor sp.


organism_name: uncultured Helicobacter sp.


organism_name: uncultured Enterocloster sp.


organism_name: Limosilactobacillus mucosae


organism_name: uncultured Faecalimonas sp.


organism_name: uncultured Anaerotignum sp.


organism_name: Butyricicoccus pullicaecorum


organism_name: uncultured Sellimonas sp.


organism_name: uncultured Agathobacter sp.


organism_name: uncultured Parolsenella sp.


organism_name: uncultured Romboutsia sp.


organism_name: uncultured Gemmiger sp.


organism_name: Streptococcus lutetiensis


organism_name: Blautia caecimuris


organism_name: Odoribacter splanchnicus


organism_name: uncultured Tyzzerella sp.


organism_name: uncultured Mitsuokella sp.


organism_name: uncultured Collinsella sp.


organism_name: uncultured Catenibacterium sp.


organism_name: Plesiomonas shigelloides


organism_name: uncultured Solibaculum sp.


organism_name: uncultured Helicobacter sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Dysosmobacter sp.


organism_name: Ruminococcus bromii


asm_submitter: INRAE

excluded_from_refseq: contaminated

organism_name: Escherichia coli


organism_name: uncultured Desulfobacter sp.


organism_name: uncultured Methanoregula sp.


organism_name: uncultured Sulfurimonas sp.


organism_name: uncultured Cohaesibacter sp.


organism_name: uncultured Pseudodesulfovibrio sp.


organism_name: uncultured Desulfobulbus sp.


organism_name: uncultured Sphaerochaeta sp.


organism_name: uncultured Draconibacterium sp.


organism_name: uncultured Ilyobacter sp.


organism_name: uncultured Trichococcus sp.


organism_name: uncultured Enterococcus sp.


organism_name: Breoghania sp.


organism_name: uncultured Desulfuromusa sp.


organism_name: Marispirochaeta aestuarii


organism_name: uncultured Acetobacterium sp.


organism_name: uncultured Desulfosarcina sp.


organism_name: Trichococcus shcherbakoviae


organism_name: uncultured Desulfobacter sp.


organism_name: uncultured Carboxylicivirga sp.


organism_name: uncultured Caproiciproducens sp.


organism_name: uncultured Methanobacterium sp.


organism_name: uncultured Rhodoferax sp.