annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

annotation_provider: NCBI RefSeq

asm_submitter: AIT

assembly_level: Contig

assembly_type: haploid

excluded_from_refseq: annotation fails completeness check

genome_rep: Full

group: bacteria

organism_name: Acinetobacter baumannii

paired_asm_comp: identical

release_type: Major

version_status: suppressed


asm_submitter: URMITE

assembly_level: Scaffold

excluded_from_refseq: contaminated; unverified source organism; not used as type

organism_name: Citricoccus massiliensis


asm_submitter: Alexander

excluded_from_refseq: unverified source organism

organism_name: Lactococcus lactis


organism_name: Clostridioides difficile


asm_submitter: CARDIFF SCHOOL OF BIOSCIENCES

assembly_level: Complete Genome

excluded_from_refseq: RefSeq annotation failed

organism_name: Pseudomonas aeruginosa


asm_submitter: Ausgem

organism_name: Escherichia coli


asm_submitter: INSTITUT PASTEUR

assembly_level: Chromosome

isolate: Cupriavidus taiwanensis STM 3511

organism_name: Cupriavidus taiwanensis


isolate: Cupriavidus taiwanensis STM 3521


isolate: Cupriavidus taiwanensis STM 3711


isolate: Cupriavidus taiwanensis STM 6116


isolate: Cupriavidus taiwanensis STM 6117


isolate: Cupriavidus taiwanensis STM 8560


isolate: Cupriavidus taiwanensis STM 6119


isolate: Cupriavidus taiwanensis STM 8557


isolate: Cupriavidus taiwanensis STM 8558


isolate: Cupriavidus taiwanensis STM 8556


isolate: Cupriavidus taiwanensis STM 8561


isolate: Cupriavidus taiwanensis STM 8564


isolate: Cupriavidus taiwanensis STM 8565


isolate: Cupriavidus taiwanensis mpp 1.1


isolate: Cupriavidus taiwanensis mpp 1.3


isolate: Cupriavidus taiwanensis ip2.30/pp 2.30


isolate: Cupriavidus taiwanensis SWF 66322


asm_name: Labrenzia sp. strain EL143

asm_submitter: Instituto Superior Tecnico

isolate: Labrenzia sp. strain EL143

organism_name: Labrenzia sp. EL143


asm_submitter: INRA

organism_name: Pseudolactococcus piscium


group: archaea

infraspecific_name: strain=C1 CSUR P5817

organism_name: Methanobrevibacter smithii


asm_submitter: Genoscope CEA

excluded_from_refseq: unverified source organism; genome length too small


excluded_from_refseq: misassembled; not used as type

organism_name: Khoudiadiopia massiliensis


asm_submitter: UNIVERSITY OF VIENNA

excluded_from_refseq: derived from metagenome

infraspecific_name: strain=Peat soil MAG SbA7

organism_name: Candidatus Sulfotelmatobacter sp. SbA7


infraspecific_name: strain=Peat soil MAG SbA5

organism_name: Candidatus Sulfuritelmatomonas gaucii


infraspecific_name: strain=Peat soil MAG SbA1

organism_name: Candidatus Sulfotelmatobacter kueseliae


excluded_from_refseq: derived from metagenome; genus undefined

infraspecific_name: strain=Peat soil MAG SbB2

organism_name: Burkholderiales bacterium


infraspecific_name: strain=Peat soil MAG SbA4

organism_name: Candidatus Sulfopaludibacter sp. SbA4


infraspecific_name: strain=Peat soil MAG SbA3

organism_name: Candidatus Sulfopaludibacter sp. SbA3


infraspecific_name: strain=Peat soil MAG SbA6

organism_name: Candidatus Sulfopaludibacter sp. SbA6


infraspecific_name: strain=Peat soil MAG SbB1


infraspecific_name: strain=Peat soil MAG SbA2

organism_name: Acidobacteriia bacterium SbA2


infraspecific_name: strain=Peat soil MAG SbV1

organism_name: Verrucomicrobiota bacterium


infraspecific_name: strain=Peat soil MAG SbD1

organism_name: Syntrophobacter sp. SbD1


infraspecific_name: strain=Peat soil MAG SbF1

organism_name: Candidatus Desulfosporosinus infrequens


infraspecific_name: strain=Peat soil MAG SbD2

organism_name: Syntrophobacter sp. SbD2


asm_submitter: CEBITEC

organism_name: Streptomyces netropsis


asm_submitter: PipelineServices

excluded_from_refseq: contaminated

organism_name: Ruminococcus bromii L2-63


organism_name: Treponema pallidum


organism_name: Lysinibacillus timonensis


asm_name: Nitrospirae bacterium Nbg-4

asm_submitter: Universitaet Konstanz

excluded_from_refseq: missing strain identifier

organism_name: Candidatus Sulfobium mesophilum


asm_submitter: Geogentics

organism_name: Enterococcus faecium


organism_name: Massilistercora timonensis


asm_name: unclassified Rhodobacteraceae EL129

excluded_from_refseq: genus undefined

isolate: unclassified Rhodobacteraceae strain EL129

organism_name: Rhodobacteraceae bacterium EL129


asm_name: unclassified Rhodobacteraceae EL53

isolate: unclassified Rhodobacteraceae strain EL53

organism_name: Rhodobacteraceae bacterium EL53


asm_name: Rumen uncultured genome RUG016

asm_submitter: THE ROSLIN INSTITUTE

excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Sharpea sp.


asm_name: Rumen uncultured genome RUG056

organism_name: uncultured Prevotella sp.


asm_name: Rumen uncultured genome RUG082

organism_name: uncultured Bifidobacterium sp.


asm_name: Rumen uncultured genome RUG017


asm_name: Rumen uncultured genome RUG123


asm_name: Rumen uncultured genome RUG126


asm_name: Rumen uncultured genome RUG232


asm_name: Rumen uncultured genome RUG261

excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome


asm_name: Rumen uncultured genome RUG262


asm_name: Rumen uncultured genome RUG295


asm_name: Rumen uncultured genome RUG286


asm_name: Rumen uncultured genome RUG287

excluded_from_refseq: genome length too small

organism_name: Kandleria vitulina


asm_name: Rumen uncultured genome RUG346

organism_name: Bacillus licheniformis


asm_name: Rumen uncultured genome RUG457


asm_name: Rumen uncultured genome RUG664

organism_name: Streptococcus equinus


asm_submitter: JLU

excluded_from_refseq: unverified source organism; not used as type

infraspecific_name: strain=CIP 103579T

organism_name: Prolinoborus fasciculus


asm_name: Lactobacillus delbrueckii subsp. lactis

asm_submitter: Agricultural University of Athens

excluded_from_refseq: many frameshifted proteins

isolate: Lactobacillus delbrueckii subsp. lactis1

organism_name: Lactobacillus delbrueckii subsp. lactis


asm_submitter: Universita' degli Studi di Milano

organism_name: Klebsiella pneumoniae


asm_submitter: SC

organism_name: Streptococcus pneumoniae


asm_submitter: ISTITUTO SUPERIORE DI SANITA

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Escherichia coli


asm_submitter: UNIVERSITY OF TASMANIA

version_status: replaced


asm_submitter: URMITE

organism_name: Dialister massiliensis


excluded_from_refseq: contaminated; not used as type

organism_name: Atopobium massiliense


organism_name: Tessaracoccus timonensis


asm_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)

infraspecific_name: strain=SeCistrobi

organism_name: Serratia symbiotica


organism_name: Enterococcus faecium


asm_submitter: TUM

organism_name: Paenibacillus polymyxa


asm_name: De novo assembly of KCRI isolate RDK36_28

asm_submitter: Kilimanjaro Clinical Research Institute

organism_name: Acinetobacter baumannii


asm_name: De novo assembly of KCRI isolate RDK01_309C


asm_name: De novo assembly of KCRI isolate RDK37_43


asm_name: De novo assembly of KCRI isolate RDK39_49


asm_name: De novo assembly of KCRI isolate RDK04_201B

organism_name: Klebsiella variicola


asm_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

organism_name: Chlamydia abortus


organism_name: Achromobacter denitrificans


excluded_from_refseq: annotation fails completeness check


excluded_from_refseq: genus undefined; not used as type

organism_name: [Actinobacillus] rossii


organism_name: Aerococcus viridans


organism_name: Aggregatibacter aphrophilus


organism_name: Bacillus subtilis


excluded_from_refseq: unverified source organism; annotation fails completeness check

organism_name: Bifidobacterium bifidum


organism_name: Bifidobacterium longum subsp. infantis


organism_name: Bordetella pertussis


organism_name: Brucella melitensis


organism_name: Brucella suis


organism_name: Campylobacter coli


organism_name: Campylobacter jejuni subsp. doylei


excluded_from_refseq: unverified source organism

organism_name: Citrobacter freundii


organism_name: Citrobacter koseri


organism_name: Clostridium sporogenes


organism_name: Enterobacter asburiae


organism_name: Elizabethkingia miricola


organism_name: Enterobacter hormaechei


organism_name: Cronobacter sakazakii


organism_name: Edwardsiella tarda


excluded_from_refseq: genome length too small; many frameshifted proteins


organism_name: Enterobacter cloacae


organism_name: Enterococcus faecium


organism_name: Escherichia coli


organism_name: [Eubacterium] infirmum


organism_name: Escherichia fergusonii


organism_name: [Flavobacterium] thermophilum


organism_name: Haemophilus influenzae


organism_name: Haemophilus parahaemolyticus


organism_name: Fusobacterium naviforme


organism_name: Pseudescherichia vulneris


organism_name: Ewingella americana


organism_name: Helicobacter pylori


organism_name: Hafnia alvei


organism_name: Klebsiella pneumoniae


organism_name: Klebsiella oxytoca


organism_name: Klebsiella ornithinolytica


organism_name: Klebsiella pneumoniae subsp. pneumoniae


organism_name: Klebsiella pneumoniae subsp. ozaenae


organism_name: Klebsiella pneumoniae subsp. rhinoscleromatis


organism_name: Klebsiella variicola


excluded_from_refseq: unverified source organism; genome length too large

organism_name: Lactobacillus acidophilus


excluded_from_refseq: genome length too large; many frameshifted proteins; not used as type

organism_name: Rothia kristinae


organism_name: Mannheimia haemolytica


organism_name: Neisseria meningitidis


organism_name: Neisseria gonorrhoeae


organism_name: Mycolicibacterium fortuitum


organism_name: Pantoea agglomerans


organism_name: [Pasteurella] mairii


organism_name: Pasteurella multocida


organism_name: Pluralibacter gergoviae


organism_name: Proteus mirabilis


organism_name: Providencia rustigianii


organism_name: Providencia rettgeri


organism_name: Providencia stuartii


organism_name: Pseudomonas aeruginosa


excluded_from_refseq: unverified source organism; annotation fails completeness check; many frameshifted proteins


organism_name: Pseudomonas fluorescens


organism_name: Stutzerimonas stutzeri


excluded_from_refseq: RefSeq annotation failed

organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Montevideo


organism_name: Agrobacterium tumefaciens


organism_name: Salmonella enterica subsp. enterica serovar Bovismorbificans


organism_name: Salmonella enterica subsp. enterica serovar Sendai


excluded_from_refseq: RefSeq annotation failed; annotation fails completeness check


excluded_from_refseq: RefSeq annotation failed; annotation fails completeness check; many frameshifted proteins

organism_name: Salmonella enterica subsp. arizonae


organism_name: Salmonella enterica subsp. enterica serovar Dublin


organism_name: Salmonella enterica subsp. enterica serovar Pullorum


organism_name: Salmonella enterica subsp. enterica serovar Hartford


excluded_from_refseq: RefSeq annotation failed; many frameshifted proteins

organism_name: Salmonella enterica subsp. diarizonae


organism_name: Salmonella enterica subsp. enterica


organism_name: Salmonella enterica subsp. enterica serovar Oranienburg


organism_name: Salmonella enterica subsp. enterica serovar Panama


organism_name: Salmonella enterica subsp. enterica serovar Madelia


organism_name: Salmonella enterica subsp. enterica serovar Braenderup


organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A


organism_name: Salmonella enterica subsp. enterica serovar Choleraesuis


organism_name: Salmonella enterica subsp. enterica serovar Typhi


organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


organism_name: Salmonella enterica subsp. enterica serovar Gallinarum


organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


organism_name: Salmonella enterica subsp. enterica serovar Derby


organism_name: Serratia marcescens


organism_name: Salmonella enterica subsp. indica


organism_name: Salmonella enterica subsp. salamae


organism_name: Serratia quinivorans


organism_name: Staphylococcus aureus


organism_name: Sphingomonas paucimobilis


organism_name: Staphylococcus epidermidis


organism_name: Staphylococcus gallinarum


organism_name: Staphylococcus schleiferi


excluded_from_refseq: genome length too large; not used as type

organism_name: Streptococcus hyointestinalis


organism_name: Streptococcus gallolyticus


organism_name: Streptococcus pneumoniae


excluded_from_refseq: genome length too large; many frameshifted proteins

organism_name: Streptococcus dysgalactiae


excluded_from_refseq: many frameshifted proteins

organism_name: Weissella viridescens


organism_name: Yersinia enterocolitica


organism_name: Citrobacter amalonaticus


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Citrobacter freundii


organism_name: Citrobacter braakii


excluded_from_refseq: unverified source organism; many frameshifted proteins


organism_name: Citrobacter koseri


excluded_from_refseq: annotation fails completeness check

organism_name: Clostridium perfringens


excluded_from_refseq: unverified source organism; genome length too small

organism_name: Clostridium paraputrificum


organism_name: Klebsiella pneumoniae


organism_name: Klebsiella aerogenes


organism_name: Klebsiella pneumoniae subsp. ozaenae


excluded_from_refseq: unverified source organism; genome length too small; not used as type

organism_name: Legionella longbeachae


asm_submitter: AIT

organism_name: Escherichia coli


organism_name: Enterobacter hormaechei


isolate: OS 2


isolate: Homo sapiens


isolate: OS 8


asm_submitter: MPIPZ

excluded_from_refseq: genus undefined

organism_name: Hyphomicrobiales bacterium


asm_name: Rg

isolate: Rg


annotation_name: Annotation submitted by NCBI RefSeq

asm_submitter: RADBOUD UNIVERSITY NIJMEGEN

isolate: mela


organism_name: Mannheimia haemolytica


organism_name: Campylobacter jejuni subsp. doylei


organism_name: Staphylococcus aureus


organism_name: Streptococcus pyogenes


excluded_from_refseq: misassembled; not used as type

organism_name: Paucimonas lemoignei


organism_name: Salmonella enterica subsp. enterica serovar Thompson


organism_name: Salmonella enterica


organism_name: Salmonella enterica subsp. enterica serovar Stanley


organism_name: Acinetobacter baumannii


organism_name: Salmonella enterica subsp. enterica serovar Aberdeen


organism_name: Salmonella enterica subsp. enterica serovar Give


organism_name: Salmonella enterica subsp. salamae


organism_name: Salmonella enterica subsp. enterica serovar Florida


organism_name: Providencia alcalifaciens


organism_name: Serratia plymuthica


organism_name: Salmonella enterica subsp. diarizonae


organism_name: Salmonella enterica subsp. salamae serovar Greenside


organism_name: Salmonella enterica subsp. enterica serovar Bredeney


organism_name: Salmonella enterica subsp. houtenae serovar Houten


organism_name: Salmonella enterica subsp. enterica serovar Infantis


organism_name: Klebsiella oxytoca


organism_name: Salmonella enterica subsp. enterica serovar Poona


excluded_from_refseq: unverified source organism

organism_name: Serratia rubidaea


organism_name: Salmonella enterica subsp. enterica serovar Heidelberg


organism_name: Salmonella enterica


organism_name: Escherichia coli


excluded_from_refseq: contaminated


asm_submitter: INSTITUT PASTEUR


organism_name: Acinetobacter baumannii


organism_name: Hyphomicrobiales bacterium


asm_name: De novo assembly of KCRI isolate R0004_115


asm_submitter: WAGENINGEN UR

isolate: Francisella tularensis 16011034

organism_name: Francisella tularensis subsp. holarctica


asm_submitter: INSTITUT PASTEUR DE PARIS

organism_name: Bordetella pertussis


organism_name: Klebsiella pneumoniae


excluded_from_refseq: unverified source organism; annotation fails completeness check


excluded_from_refseq: genome length too large


asm_submitter: Genoscope CEA

excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Desulfatiglans sp.


organism_name: Candidatus Zixiibacteriota bacterium


asm_submitter: Hopital Henri Mondor APHP


excluded_from_refseq: RefSeq annotation failed


organism_name: Klebsiella quasipneumoniae


organism_name: Klebsiella variicola


organism_name: Klebsiella quasivariicola


asm_submitter: Universita' degli Studi di Milano

organism_name: Staphylococcus aureus


asm_name: Corynebacterium lactis S064

asm_submitter: Tropical Infectious Diseases Research and Education Centre

infraspecific_name: strain=Corynebacterium lactis S064

isolate: Corynebacterium lactis S064

organism_name: Corynebacterium lactis


infraspecific_name: strain=ST_Warwick 1394 / ST_Pasteur 494


infraspecific_name: strain=ST_Warwick 59 / ST_Pasteur 34


asm_submitter: Elham Karimi

excluded_from_refseq: contaminated; unverified source organism

organism_name: Alcanivorax sp. Alg238-V104


organism_name: Rhodobacteraceae bacterium Alg241-R94


organism_name: Rhodobacteraceae bacterium Alg238-R152


asm_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences

infraspecific_name: strain=CPBF 367

isolate: CPBF 367

organism_name: Xanthomonas arboricola pv. juglandis


infraspecific_name: strain=CPBF 426

isolate: CPBF 426


asm_submitter: UNIVERSITY OF LIVERPOOL

organism_name: Salmonella enterica subsp. enterica serovar Typhimurium str. D23580


asm_submitter: EBI

excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: uncultured Dysgonomonas sp.


excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Slackia sp.


organism_name: uncultured Veillonella sp.


organism_name: uncultured Catenibacterium sp.


organism_name: uncultured Butyricimonas sp.


organism_name: uncultured Peptoniphilus sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Pantoea sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Corynebacterium sp.


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Blautia sp.


excluded_from_refseq: derived from metagenome

organism_name: uncultured Prevotella sp.


organism_name: uncultured Phyllobacterium sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Aeromonas sp.


organism_name: uncultured Parabacteroides sp.


organism_name: uncultured Desulfovibrio sp.


organism_name: uncultured Clostridium sp.


organism_name: uncultured Treponema sp.


organism_name: uncultured Sneathia sp.


organism_name: uncultured Acidaminococcus sp.


organism_name: uncultured Phascolarctobacterium sp.


organism_name: uncultured Adlercreutzia sp.


organism_name: uncultured Fusobacterium sp.


organism_name: uncultured Anaerococcus sp.


organism_name: uncultured Veillonella sp.


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Negativicoccus sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Anaerosporobacter sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Anaerotruncus sp.


paired_asm_comp: different


organism_name: uncultured Anaerostipes sp.


organism_name: uncultured Marvinbryantia sp.


organism_name: uncultured Enterococcus sp.


organism_name: uncultured Bifidobacterium sp.


organism_name: Candidatus Saccharimonadota bacterium


asm_submitter: WTSI

organism_name: Enterobacter kobei


asm_submitter: URMITE

infraspecific_name: strain=eg

organism_name: Pedobacter schmidteae


excluded_from_refseq: genome length too small; not used as type

organism_name: Clostridium pacaense


asm_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

excluded_from_refseq: annotation fails completeness check

organism_name: Pseudomonas viridiflava


excluded_from_refseq: RefSeq annotation failed; annotation fails completeness check


excluded_from_refseq: missing strain identifier

organism_name: Listeria thailandensis


excluded_from_refseq: genome length too small


asm_submitter: SC

organism_name: Burkholderia pseudomallei


excluded_from_refseq: contaminated; genome length too large


excluded_from_refseq: unverified source organism


excluded_from_refseq: from large multi-isolate project

organism_name: Escherichia coli


excluded_from_refseq: contaminated; from large multi-isolate project


organism_name: Maliibacterium massiliense


organism_name: Alistipes megaguti


organism_name: Desulfovibrio sp. Marseille-P6017


organism_name: Olsenella sp. Marseille-P4518


asm_submitter: BIOZENTRUM, UNIVERSITY OF BASEL

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Klebsiella pneumoniae


excluded_from_refseq: many frameshifted proteins


organism_name: Klebsiella variicola


excluded_from_refseq: contaminated; many frameshifted proteins


organism_name: Acinetobacter baumannii


excluded_from_refseq: genus undefined

organism_name: Rhodobacteraceae bacterium THAF1


asm_submitter: NATIONAL VETERINARY INSTITUTE (SVA)

organism_name: Flavobacterium psychrophilum


asm_submitter: CBMSO

excluded_from_refseq: contaminated; unverified source organism; genome length too small

organism_name: Brevundimonas mediterranea


asm_submitter: UANTW

excluded_from_refseq: contaminated

isolate: Lactobacillus mudanjiangensis AMBF209

organism_name: Lactiplantibacillus mudanjiangensis


isolate: Lactobacillus mudanjiangensis


excluded_from_refseq: unverified source organism; not used as type

organism_name: Lacrimispora indolis


organism_name: Lysinibacillus sphaericus


excluded_from_refseq: unverified source organism; genome length too large

organism_name: Helicobacter pametensis


asm_name: SpeckC

asm_submitter: CEBITEC

excluded_from_refseq: RefSeq annotation failed

infraspecific_name: strain=Pseudomonas carnis

organism_name: Pseudomonas carnis


asm_submitter: UNIVERSITY OF VIENNA

organism_name: Nitrosopumilaceae archaeon


asm_submitter: Bioplatforms Australia

organism_name: Streptococcus pneumoniae


asm_submitter: Keio University, School of Medicine

isolate: Parabacteroides goldsteinii 81H9

organism_name: Parabacteroides goldsteinii DSM 19448 = WAL 12034


isolate: Bacteroides stercoris 82B11

organism_name: Bacteroides stercoris ATCC 43183


isolate: Bacteroides stercoris 82C1


organism_name: Adlercreutzia sp. Marseille-P7992


asm_submitter: Genoscope CEA

organism_name: Ectopseudomonas oleovorans


organism_name: Klebsiella terrigena


organism_name: Burkholderia anthina


asm_name: Dd1 Dg vc

isolate: Dd1 Dg vc

organism_name: Candidatus Protofrankia californiensis


organism_name: Candidatus Frankia meridionalis


organism_name: Morganella morganii


excluded_from_refseq: RefSeq annotation failed; annotation fails completeness check; many frameshifted proteins

organism_name: Salmonella enterica subsp. arizonae


excluded_from_refseq: annotation fails completeness check

organism_name: Escherichia coli


organism_name: Staphylococcus aureus


excluded_from_refseq: genome length too large

isolate: Cj1 Dg nod

organism_name: Candidatus Protofrankia datiscae


organism_name: Frankia symbiont of Coriaria nepalensis


isolate: Dg1 Dg nod


organism_name: Citrobacter freundii


organism_name: Klebsiella aerogenes


organism_name: Serratia odorifera


organism_name: Lelliottia amnigena


organism_name: Kluyvera intermedia


excluded_from_refseq: RefSeq annotation failed; many frameshifted proteins

organism_name: Salmonella bongori


organism_name: Atlantibacter hermannii


organism_name: Salmonella enterica subsp. enterica


organism_name: Salmonella enterica subsp. salamae


organism_name: Salmonella enterica subsp. enterica serovar Sanjuan


excluded_from_refseq: unverified source organism; annotation fails completeness check; many frameshifted proteins

organism_name: Serratia plymuthica


organism_name: Serratia rubidaea


organism_name: Salmonella enterica subsp. arizonae


organism_name: Escherichia coli


organism_name: Salmonella enterica subsp. enterica serovar Goldcoast


excluded_from_refseq: RefSeq annotation failed; annotation fails completeness check

organism_name: Salmonella enterica subsp. houtenae


organism_name: Klebsiella pneumoniae


organism_name: Legionella pneumophila


organism_name: Chromobacterium violaceum


organism_name: Salmonella enterica subsp. enterica serovar Havana


organism_name: Providencia rustigianii


organism_name: Citrobacter koseri


organism_name: Klebsiella quasipneumoniae


excluded_from_refseq: unverified source organism; many frameshifted proteins

organism_name: Klebsiella aerogenes


organism_name: Klebsiella ornithinolytica


organism_name: Salmonella enterica subsp. enterica


organism_name: Klebsiella variicola


organism_name: Klebsiella terrigena


excluded_from_refseq: unverified source organism; annotation fails completeness check


organism_name: Staphylococcus simulans


organism_name: Staphylococcus pseudintermedius


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Streptococcus pyogenes


organism_name: Pseudomonas fluorescens


excluded_from_refseq: unverified source organism

organism_name: Shewanella putrefaciens


organism_name: Stenotrophomonas maltophilia


organism_name: Bacillus freudenreichii


organism_name: Mycolicibacterium phlei


organism_name: Mycobacteroides chelonae


organism_name: Mycolicibacterium flavescens


organism_name: Actinomyces israelii


excluded_from_refseq: many frameshifted proteins

organism_name: Campylobacter jejuni subsp. doylei


excluded_from_refseq: genus undefined

organism_name: [Pasteurella] aerogenes


organism_name: Bacillus licheniformis


organism_name: Streptococcus equi subsp. equi


organism_name: Fusobacterium varium


organism_name: Listeria monocytogenes


organism_name: Rodentibacter pneumotropicus


organism_name: Serratia plymuthica


organism_name: Streptococcus mutans


organism_name: Pasteurella multocida


organism_name: Serratia fonticola


organism_name: Rothia dentocariosa


organism_name: Neisseria meningitidis


excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Blautia sp.


asm_submitter: UNIVERSITY MEDICAL CENTER UTRECHT

excluded_from_refseq: contaminated

organism_name: Enterococcus faecium


asm_submitter: IP

isolate: Mycobacterium tuberculosis

organism_name: Mycobacterium tuberculosis


asm_submitter: UNIVERSITY OF MELBOURNE

organism_name: Shigella sonnei


asm_submitter: UMC Utrecht

organism_name: Pseudomonas koreensis


organism_name: Metamycoplasma salivarium


excluded_from_refseq: contaminated; not used as type

organism_name: Mesomycoplasma conjunctivae


excluded_from_refseq: low quality sequence; not used as type

organism_name: Mycoplasmopsis californica


excluded_from_refseq: unverified source organism; not used as type

organism_name: Mesomycoplasma ovipneumoniae


organism_name: Pseudomonas marincola


asm_submitter: UFRJ

organism_name: Vibrio parahaemolyticus


asm_submitter: INSTITUTO NACIONAL DE SALUD

organism_name: Escherichia coli


organism_name: Acinetobacter lwoffii


asm_submitter: URMITE

organism_name: Mycobacterium ulcerans


asm_submitter: WTSI

organism_name: Streptococcus pneumoniae


asm_submitter: Institut d'Investigacio Sanitaria de Palma

isolate: XDR-PA

organism_name: Pseudomonas aeruginosa


asm_submitter: SC

organism_name: Citrobacter koseri


organism_name: Salmonella enterica subsp. houtenae


organism_name: Staphylococcus aureus


organism_name: Enterobacter cancerogenus


organism_name: Yokenella regensburgei


excluded_from_refseq: unverified source organism; many frameshifted proteins; not used as type

organism_name: Serratia liquefaciens


organism_name: Moellerella wisconsensis


excluded_from_refseq: RefSeq annotation failed; annotation fails completeness check; many frameshifted proteins

organism_name: Salmonella enterica subsp. diarizonae


organism_name: Klebsiella terrigena


organism_name: Klebsiella planticola


excluded_from_refseq: RefSeq annotation failed

organism_name: Salmonella enterica


excluded_from_refseq: annotation fails completeness check

organism_name: Klebsiella pneumoniae


organism_name: Escherichia coli


organism_name: Mycobacterium tuberculosis


asm_submitter: DOE JGI

excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Clostridia bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Bacilli bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Bacteroidales bacterium


organism_name: Christensenellaceae bacterium


organism_name: Oscillospiraceae bacterium


excluded_from_refseq: derived from metagenome

organism_name: uncultured Prevotella sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Rikenellaceae bacterium


excluded_from_refseq: contaminated; derived from metagenome; genus undefined


organism_name: Campylobacteraceae bacterium


organism_name: Acholeplasmatales bacterium


organism_name: Desulfovibrionaceae bacterium


organism_name: Opitutales bacterium


organism_name: uncultured Marvinbryantia sp.


organism_name: Selenomonadales bacterium


organism_name: Clostridia bacterium


organism_name: uncultured Alistipes sp.


organism_name: Erysipelotrichaceae bacterium


organism_name: Bacilli bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Bacteroidales bacterium


organism_name: Peptococcaceae bacterium


organism_name: Pasteurellaceae bacterium


organism_name: Veillonellaceae bacterium


organism_name: Fusobacteriaceae bacterium


organism_name: uncultured Anaerostipes sp.


organism_name: Actinomycetaceae bacterium


organism_name: Enterobacteriaceae bacterium


organism_name: Rikenellaceae bacterium


organism_name: Coriobacteriia bacterium


organism_name: Clostridia bacterium


organism_name: Desulfovibrionaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: uncultured Prevotella sp.


organism_name: Bacilli bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Candidatus Saccharimonadota bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Eggerthellaceae bacterium


organism_name: uncultured Senegalimassilia sp.


organism_name: Peptostreptococcaceae bacterium


organism_name: Peptococcaceae bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: uncultured Intestinibacter sp.


organism_name: uncultured Peptostreptococcus sp.


organism_name: Clostridiaceae bacterium


organism_name: Veillonellaceae bacterium


organism_name: Bacteroidales bacterium


organism_name: Clostridia bacterium


organism_name: Opitutales bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Rikenellaceae bacterium


organism_name: Bacilli bacterium


organism_name: Lentisphaeria bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Bacillota bacterium


organism_name: Acholeplasmatales bacterium


organism_name: Christensenellaceae bacterium


organism_name: uncultured Anaerotruncus sp.


organism_name: Alphaproteobacteria bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Kiritimatiellia bacterium


organism_name: uncultured Stenotrophomonas sp.


organism_name: Campylobacteraceae bacterium


organism_name: Pasteurellaceae bacterium


organism_name: Clostridia bacterium


organism_name: uncultured Blautia sp.


organism_name: Fusobacteriaceae bacterium


organism_name: Bacteroidales bacterium


organism_name: Lactobacillaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: Veillonellaceae bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Rikenellaceae bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Acidaminococcaceae bacterium


organism_name: Paenibacillaceae bacterium


organism_name: Pseudomonadaceae bacterium


organism_name: uncultured Varibaculum sp.


organism_name: Bacilli bacterium


organism_name: uncultured Corynebacterium sp.


organism_name: Clostridia bacterium


organism_name: Deltaproteobacteria bacterium


organism_name: Enterobacteriaceae bacterium


organism_name: Helicobacteraceae bacterium


organism_name: Flavobacteriales bacterium


organism_name: Methanobacteriaceae archaeon


organism_name: Campylobacteraceae bacterium


organism_name: Bacteroidales bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Spirochaetia bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Rikenellaceae bacterium


organism_name: Kiritimatiellia bacterium


organism_name: Methanomassiliicoccales archaeon


organism_name: Bacilli bacterium


organism_name: Clostridia bacterium


organism_name: Acholeplasmatales bacterium


organism_name: Opitutales bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: Candidatus Acetothermia bacterium


organism_name: Lentisphaeria bacterium


organism_name: Enterobacterales bacterium


organism_name: Bacteroidales bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Methanobacteriaceae archaeon


organism_name: Lachnospiraceae bacterium


organism_name: Victivallales bacterium


organism_name: Spirochaetia bacterium


organism_name: Rikenellaceae bacterium


organism_name: Selenomonadales bacterium


organism_name: Bacilli bacterium


organism_name: Clostridia bacterium


organism_name: Alphaproteobacteria bacterium


organism_name: Acholeplasmatales bacterium


organism_name: Desulfovibrionaceae bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: uncultured Oscillibacter sp.


organism_name: Helicobacteraceae bacterium


organism_name: Flavobacteriales bacterium


organism_name: Bacteroidales bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Kiritimatiellia bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Acidaminococcaceae bacterium


organism_name: Mycoplasmatales bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Spirochaetia bacterium


organism_name: Bacilli bacterium


organism_name: Clostridia bacterium


organism_name: Candidatus Rifleibacteriota bacterium


asm_submitter: FISABIO - Public Health

organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


excluded_from_refseq: RefSeq annotation failed; annotation fails completeness check


organism_name: Actinobacillus porcinus


organism_name: Actinobacillus indolicus


organism_name: Auritidibacter sp. Marseille-P8566


organism_name: Streptococcus pyogenes


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins


asm_name: TAL

asm_submitter: Hopital Henri Mondor APHP

isolate: TAL

organism_name: Pseudomonas aeruginosa


excluded_from_refseq: from large multi-isolate project

infraspecific_name: strain=GPSC48 substr. ST7052

organism_name: Streptococcus pneumoniae


infraspecific_name: strain=GPSC156 substr. ST1840


infraspecific_name: strain=GPSC6 substr. ST156


infraspecific_name: strain=GPSC2 substr. ST3081


infraspecific_name: strain=GPSC12 substr. ST180


infraspecific_name: strain=GPSC13 substr. ST473


infraspecific_name: strain=GPSC70 substr. ST1221


infraspecific_name: strain=GPSC58 substr. ST5516


infraspecific_name: strain=GPSC46 substr. ST3450


infraspecific_name: strain=GPSC61 substr. ST11737


infraspecific_name: strain=GPSC3 substr. ST53


infraspecific_name: strain=GPSC217 substr. ST9524


infraspecific_name: strain=GPSC246 substr. ST11087


infraspecific_name: strain=GPSC18 substr. ST13


infraspecific_name: strain=GPSC36 substr. ST816


infraspecific_name: strain=GPSC72 substr. ST11721


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC3 substr. ST2705


infraspecific_name: strain=GPSC57 substr. ST3548


infraspecific_name: strain=GPSC15 substr. ST11728


infraspecific_name: strain=GPSC16 substr. ST66


infraspecific_name: strain=GPSC14 substr. ST8337


infraspecific_name: strain=GPSC32 substr. ST220


infraspecific_name: strain=GPSC2 substr. ST3081


infraspecific_name: strain=GPSC78 substr. ST5706


infraspecific_name: strain=GPSC25 substr. ST8687


infraspecific_name: strain=GPSC5 substr. ST338


infraspecific_name: strain=GPSC6 substr. ST8398


infraspecific_name: strain=GPSC10 substr. ST230


infraspecific_name: strain=GPSC41 substr. ST1094


infraspecific_name: strain=GPSC19 substr. ST7314


infraspecific_name: strain=GPSC9 substr. ST2414


infraspecific_name: strain=GPSC57 substr. ST444


infraspecific_name: strain=GPSC33 substr. ST10543


infraspecific_name: strain=GPSC36 substr. ST498


infraspecific_name: strain=GPSC7 substr. ST7318


infraspecific_name: strain=GPSC481 substr. ST2599


infraspecific_name: strain=GPSC12 substr. ST180


infraspecific_name: strain=GPSC6 substr. ST156


infraspecific_name: strain=GPSC3 substr. ST62


infraspecific_name: strain=GPSC50 substr. ST113


infraspecific_name: strain=GPSC29 substr. ST1692


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC194 substr. ST5578


infraspecific_name: strain=GPSC191 substr. ST494


infraspecific_name: strain=GPSC98 substr. ST1480


infraspecific_name: strain=GPSC40 substr. ST5266


infraspecific_name: strain=GPSC9 substr. ST63


infraspecific_name: strain=GPSC34 substr. ST10865


infraspecific_name: strain=GPSC241 substr. ST5178


infraspecific_name: strain=GPSC58 substr. ST5734


infraspecific_name: strain=GPSC135 substr. ST659


infraspecific_name: strain=GPSC17 substr. ST2062


infraspecific_name: strain=GPSC102 substr. ST4423


infraspecific_name: strain=GPSC22 substr. ST10602


infraspecific_name: strain=GPSC124 substr. ST1257


infraspecific_name: strain=GPSC61 substr. ST11744


infraspecific_name: strain=GPSC7 substr. ST12251


infraspecific_name: strain=GPSC12 substr. ST180


infraspecific_name: strain=GPSC142 substr. ST9523


infraspecific_name: strain=GPSC260 substr. ST8927


infraspecific_name: strain=GPSC7 substr. ST439


infraspecific_name: strain=GPSC14 substr. ST2059


infraspecific_name: strain=GPSC15 substr. ST191


infraspecific_name: strain=GPSC4 substr. ST200


infraspecific_name: strain=GPSC17 substr. ST7903


infraspecific_name: strain=GPSC201 substr. ST12278


infraspecific_name: strain=GPSC11 substr. ST4893


infraspecific_name: strain=GPSC39 substr. ST124


infraspecific_name: strain=GPSC3 substr. ST11686


infraspecific_name: strain=GPSC219 substr. ST10591


infraspecific_name: strain=GPSC10 substr. ST230


infraspecific_name: strain=GPSC2 substr. ST303


infraspecific_name: strain=GPSC23 substr. ST1509


infraspecific_name: strain=GPSC169 substr. ST2911


infraspecific_name: strain=GPSC88 substr. ST4108


infraspecific_name: strain=GPSC2 substr. ST612


infraspecific_name: strain=GPSC9 substr. ST63


infraspecific_name: strain=GPSC11 substr. ST193


infraspecific_name: strain=GPSC5 substr. ST338


infraspecific_name: strain=GPSC7 substr. ST629


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC160 substr. ST9813


infraspecific_name: strain=GPSC7 substr. ST36


infraspecific_name: strain=GPSC48 substr. ST7052


infraspecific_name: strain=GPSC57 substr. ST568


infraspecific_name: strain=GPSC59 substr. ST558


infraspecific_name: strain=GPSC1 substr. ST271


infraspecific_name: strain=GPSC119 substr. ST251


infraspecific_name: strain=GPSC12 substr. ST180


infraspecific_name: strain=GPSC22 substr. ST10545


infraspecific_name: strain=GPSC17 substr. ST2062


infraspecific_name: strain=GPSC67 substr. ST6239


infraspecific_name: strain=GPSC2 substr. ST303


infraspecific_name: strain=GPSC1 substr. ST236


infraspecific_name: strain=GPSC219 substr. ST10591


infraspecific_name: strain=GPSC33 substr. ST10543


infraspecific_name: strain=GPSC36 substr. ST498


infraspecific_name: strain=GPSC23 substr. ST146


infraspecific_name: strain=GPSC102 substr. ST7687


infraspecific_name: strain=GPSC51 substr. ST458


infraspecific_name: strain=GPSC7 substr. ST439


infraspecific_name: strain=GPSC19 substr. ST433


infraspecific_name: strain=GPSC33 substr. ST4088


infraspecific_name: strain=GPSC41 substr. ST1094


infraspecific_name: strain=GPSC4 substr. ST199


infraspecific_name: strain=GPSC18 substr. ST9


infraspecific_name: strain=GPSC5 substr. ST361


infraspecific_name: strain=GPSC91 substr. ST8958


infraspecific_name: strain=GPSC15 substr. ST191


infraspecific_name: strain=GPSC302 substr. ST5349


infraspecific_name: strain=GPSC8 substr. ST3404


infraspecific_name: strain=GPSC1 substr. ST271


infraspecific_name: strain=GPSC1 substr. ST320


infraspecific_name: strain=GPSC13 substr. ST6390


infraspecific_name: strain=GPSC7 substr. ST2319


infraspecific_name: strain=GPSC24 substr. ST138


infraspecific_name: strain=GPSC3 substr. ST53


infraspecific_name: strain=GPSC147 substr. ST6040


infraspecific_name: strain=GPSC20 substr. ST802


infraspecific_name: strain=GPSC7 substr. ST36


infraspecific_name: strain=GPSC445 substr. ST12563


infraspecific_name: strain=GPSC358 substr. ST11781


infraspecific_name: strain=GPSC5 substr. ST10650


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC84 substr. ST11013


infraspecific_name: strain=GPSC2 substr. ST8314


infraspecific_name: strain=GPSC131 substr. ST8495


infraspecific_name: strain=GPSC67 substr. ST1233


infraspecific_name: strain=GPSC50 substr. ST1073


infraspecific_name: strain=GPSC12 substr. ST180


infraspecific_name: strain=GPSC23 substr. ST145


infraspecific_name: strain=GPSC25 substr. ST7522


infraspecific_name: strain=GPSC58 substr. ST10546


infraspecific_name: strain=GPSC78 substr. ST9931


infraspecific_name: strain=GPSC4 substr. ST199


infraspecific_name: strain=GPSC3 substr. ST2705


infraspecific_name: strain=GPSC6 substr. ST162


infraspecific_name: strain=GPSC3 substr. ST11124


infraspecific_name: strain=GPSC135 substr. ST995


infraspecific_name: strain=GPSC220 substr. ST10552


infraspecific_name: strain=GPSC24 substr. ST138


infraspecific_name: strain=GPSC50 substr. ST638


infraspecific_name: strain=GPSC10 substr. ST230


infraspecific_name: strain=GPSC5 substr. ST10542


infraspecific_name: strain=GPSC408 substr. ST3804


infraspecific_name: strain=GPSC5 substr. ST338


infraspecific_name: strain=GPSC13 substr. ST473


infraspecific_name: strain=GPSC49 substr. ST392


infraspecific_name: strain=GPSC3 substr. ST53


infraspecific_name: strain=GPSC7 substr. ST11063


infraspecific_name: strain=GPSC2 substr. ST3081


infraspecific_name: strain=GPSC14 substr. ST2059


infraspecific_name: strain=GPSC11 substr. ST1262


infraspecific_name: strain=GPSC4 substr. ST1757


infraspecific_name: strain=GPSC8 substr. ST7050


infraspecific_name: strain=GPSC19 substr. ST7314


infraspecific_name: strain=GPSC3 substr. ST445


infraspecific_name: strain=GPSC33 substr. ST10543


infraspecific_name: strain=GPSC1 substr. ST320


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC40 substr. ST10600


infraspecific_name: strain=GPSC22 substr. ST10547


infraspecific_name: strain=GPSC297 substr. ST473


infraspecific_name: strain=GPSC18 substr. ST13


infraspecific_name: strain=GPSC18 substr. ST9


infraspecific_name: strain=GPSC512 substr. ST12129


infraspecific_name: strain=GPSC6 substr. ST8398


infraspecific_name: strain=GPSC34 substr. ST7067


infraspecific_name: strain=GPSC241 substr. ST5178


infraspecific_name: strain=GPSC58 substr. ST11691


infraspecific_name: strain=GPSC7 substr. ST1847


infraspecific_name: strain=GPSC48 substr. ST7052


infraspecific_name: strain=GPSC40 substr. ST910


infraspecific_name: strain=GPSC59 substr. ST558


infraspecific_name: strain=GPSC61 substr. ST1794


infraspecific_name: strain=GPSC57 substr. ST1111


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC3 substr. ST12542


infraspecific_name: strain=GPSC33 substr. ST11090


infraspecific_name: strain=GPSC77 substr. ST185


infraspecific_name: strain=GPSC83 substr. ST378


infraspecific_name: strain=GPSC7 substr. ST33


infraspecific_name: strain=GPSC17 substr. ST2062


infraspecific_name: strain=GPSC51 substr. ST458


infraspecific_name: strain=GPSC3 substr. ST53


infraspecific_name: strain=GPSC9 substr. ST63


infraspecific_name: strain=GPSC10 substr. ST230


infraspecific_name: strain=GPSC3 substr. ST2705


infraspecific_name: strain=GPSC15 substr. ST191


infraspecific_name: strain=GPSC181 substr. ST4368


infraspecific_name: strain=GPSC147 substr. ST6040


infraspecific_name: strain=GPSC22 substr. ST10545


infraspecific_name: strain=GPSC48 substr. ST1203


infraspecific_name: strain=GPSC56 substr. ST2416


infraspecific_name: strain=GPSC178 substr. ST2185


infraspecific_name: strain=GPSC170 substr. ST7689


infraspecific_name: strain=GPSC41 substr. ST1094


infraspecific_name: strain=GPSC23 substr. ST640


infraspecific_name: strain=GPSC40 substr. ST910


infraspecific_name: strain=GPSC11 substr. ST1262


infraspecific_name: strain=GPSC1 substr. ST320


infraspecific_name: strain=GPSC46 substr. ST3450


infraspecific_name: strain=GPSC6 substr. ST8398


infraspecific_name: strain=GPSC16 substr. ST70


infraspecific_name: strain=GPSC4 substr. ST199


infraspecific_name: strain=GPSC206 substr. ST7701


infraspecific_name: strain=GPSC3 substr. ST62


infraspecific_name: strain=GPSC43 substr. ST3214


infraspecific_name: strain=GPSC34 substr. ST10544


infraspecific_name: strain=GPSC10 substr. ST230


infraspecific_name: strain=GPSC22 substr. ST10968


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC3 substr. ST496


infraspecific_name: strain=GPSC179 substr. ST10550


infraspecific_name: strain=GPSC3 substr. ST3847


infraspecific_name: strain=GPSC23 substr. ST1394


infraspecific_name: strain=GPSC16 substr. ST66


infraspecific_name: strain=GPSC7 substr. ST33


infraspecific_name: strain=GPSC3 substr. ST445


infraspecific_name: strain=GPSC50 substr. ST9921


infraspecific_name: strain=GPSC39 substr. ST124


infraspecific_name: strain=GPSC56 substr. ST5068


infraspecific_name: strain=GPSC114 substr. ST5326


infraspecific_name: strain=GPSC124 substr. ST235


infraspecific_name: strain=GPSC67 substr. ST6239


infraspecific_name: strain=GPSC65 substr. ST2053


infraspecific_name: strain=GPSC142 substr. ST10588


infraspecific_name: strain=GPSC123 substr. ST12702


infraspecific_name: strain=GPSC170 substr. ST2714


infraspecific_name: strain=GPSC88 substr. ST4108


infraspecific_name: strain=GPSC6 substr. ST162


infraspecific_name: strain=GPSC15 substr. ST191


infraspecific_name: strain=GPSC61 substr. ST11737


infraspecific_name: strain=GPSC7 substr. ST37


infraspecific_name: strain=GPSC224 substr. ST4216


infraspecific_name: strain=GPSC7 substr. ST36


infraspecific_name: strain=GPSC22 substr. ST11724


infraspecific_name: strain=GPSC16 substr. ST738


infraspecific_name: strain=GPSC3 substr. ST62


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC3 substr. ST53


infraspecific_name: strain=GPSC32 substr. ST220


infraspecific_name: strain=GPSC57 substr. ST3548


infraspecific_name: strain=GPSC7 substr. ST629


infraspecific_name: strain=GPSC59 substr. ST558


infraspecific_name: strain=GPSC1 substr. ST236


infraspecific_name: strain=GPSC147 substr. ST6040


infraspecific_name: strain=GPSC65 substr. ST2053


infraspecific_name: strain=GPSC16 substr. ST11683


infraspecific_name: strain=GPSC17 substr. ST2062


infraspecific_name: strain=GPSC112 substr. ST4033


infraspecific_name: strain=GPSC68 substr. ST6236


infraspecific_name: strain=GPSC3 substr. ST12715


infraspecific_name: strain=GPSC1 substr. ST271


infraspecific_name: strain=GPSC32 substr. ST218


infraspecific_name: strain=GPSC64 substr. ST460


infraspecific_name: strain=GPSC13 substr. ST473


infraspecific_name: strain=GPSC274 substr. ST8949


infraspecific_name: strain=GPSC83 substr. ST7369


infraspecific_name: strain=GPSC10 substr. ST230


infraspecific_name: strain=GPSC12 substr. ST180


infraspecific_name: strain=GPSC76 substr. ST490


infraspecific_name: strain=GPSC41 substr. ST1094


infraspecific_name: strain=GPSC2 substr. ST303


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC50 substr. ST133


infraspecific_name: strain=GPSC17 substr. ST2062


infraspecific_name: strain=GPSC5 substr. ST12761


infraspecific_name: strain=GPSC411 substr. ST9490


infraspecific_name: strain=GPSC211 substr. ST11729


infraspecific_name: strain=GPSC2 substr. ST612


infraspecific_name: strain=GPSC4 substr. ST199


infraspecific_name: strain=GPSC33 substr. ST4088


infraspecific_name: strain=GPSC80 substr. ST917


infraspecific_name: strain=GPSC22 substr. ST10602


infraspecific_name: strain=GPSC2 substr. ST11740


infraspecific_name: strain=GPSC50 substr. ST113


infraspecific_name: strain=GPSC41 substr. ST11091


infraspecific_name: strain=GPSC93 substr. ST8838


infraspecific_name: strain=GPSC32 substr. ST1176


infraspecific_name: strain=GPSC16 substr. ST73


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC68 substr. ST6245


infraspecific_name: strain=GPSC194 substr. ST5578


infraspecific_name: strain=GPSC51 substr. ST458


infraspecific_name: strain=GPSC3 substr. ST496


infraspecific_name: strain=GPSC34 substr. ST1778


infraspecific_name: strain=GPSC96 substr. ST74


infraspecific_name: strain=GPSC227 substr. ST11759


infraspecific_name: strain=GPSC17 substr. ST2062


infraspecific_name: strain=GPSC133 substr. ST11763


infraspecific_name: strain=GPSC34 substr. ST10544


infraspecific_name: strain=GPSC45 substr. ST547


infraspecific_name: strain=GPSC10 substr. ST230


infraspecific_name: strain=GPSC3 substr. ST10068


infraspecific_name: strain=GPSC3 substr. ST62


infraspecific_name: strain=GPSC50 substr. ST9565


infraspecific_name: strain=GPSC194 substr. ST10866


infraspecific_name: strain=GPSC46 substr. ST30


infraspecific_name: strain=GPSC30 substr. ST8714


infraspecific_name: strain=GPSC3 substr. ST53


infraspecific_name: strain=GPSC37 substr. ST7084


infraspecific_name: strain=GPSC156 substr. ST10148


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC11 substr. ST1262


infraspecific_name: strain=GPSC35 substr. ST4753


infraspecific_name: strain=GPSC41 substr. ST10708


infraspecific_name: strain=GPSC17 substr. ST2062


infraspecific_name: strain=GPSC5 substr. ST361


infraspecific_name: strain=GPSC59 substr. ST558


infraspecific_name: strain=GPSC22 substr. ST10597


infraspecific_name: strain=GPSC458 substr. ST10867


infraspecific_name: strain=GPSC175 substr. ST425


infraspecific_name: strain=GPSC41 substr. ST4941


infraspecific_name: strain=GPSC78 substr. ST5706


infraspecific_name: strain=GPSC10 substr. ST230


infraspecific_name: strain=GPSC41 substr. ST1094


infraspecific_name: strain=GPSC10 substr. ST1553


infraspecific_name: strain=GPSC19 substr. ST433


infraspecific_name: strain=GPSC33 substr. ST4088


infraspecific_name: strain=GPSC6 substr. ST8398


infraspecific_name: strain=GPSC297 substr. ST647


infraspecific_name: strain=GPSC17 substr. ST6121


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC95 substr. ST241


infraspecific_name: strain=GPSC88 substr. ST4108


infraspecific_name: strain=GPSC35 substr. ST97


infraspecific_name: strain=GPSC56 substr. ST2416


infraspecific_name: strain=GPSC7 substr. ST629


infraspecific_name: strain=GPSC4 substr. ST199


infraspecific_name: strain=GPSC70 substr. ST1221


infraspecific_name: strain=GPSC91 substr. ST8958


infraspecific_name: strain=GPSC32 substr. ST218


infraspecific_name: strain=GPSC10 substr. ST3772


infraspecific_name: strain=GPSC1 substr. ST271


infraspecific_name: strain=GPSC41 substr. ST1094


infraspecific_name: strain=GPSC4 substr. ST8290


infraspecific_name: strain=GPSC324 substr. ST292


infraspecific_name: strain=GPSC6 substr. ST156


infraspecific_name: strain=GPSC80 substr. ST917


infraspecific_name: strain=GPSC160 substr. ST9813


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC260 substr. ST8927


infraspecific_name: strain=GPSC140 substr. ST58


infraspecific_name: strain=GPSC18 substr. ST9


infraspecific_name: strain=GPSC50 substr. ST1073


infraspecific_name: strain=GPSC98 substr. ST1268


infraspecific_name: strain=GPSC5 substr. ST4104


infraspecific_name: strain=GPSC84 substr. ST10669


infraspecific_name: strain=GPSC32 substr. ST220


infraspecific_name: strain=GPSC8 substr. ST7050


infraspecific_name: strain=GPSC68 substr. ST102


infraspecific_name: strain=GPSC124 substr. ST1257


infraspecific_name: strain=GPSC9 substr. ST63


infraspecific_name: strain=GPSC19 substr. ST433


infraspecific_name: strain=GPSC114 substr. ST5326


infraspecific_name: strain=GPSC67 substr. ST6239


infraspecific_name: strain=GPSC34 substr. ST7067


infraspecific_name: strain=GPSC6 substr. ST156


infraspecific_name: strain=GPSC9 substr. ST11022


infraspecific_name: strain=GPSC15 substr. ST191


infraspecific_name: strain=GPSC36 substr. ST816


infraspecific_name: strain=GPSC2 substr. ST217


infraspecific_name: strain=GPSC3 substr. ST445


organism_name: Listeria monocytogenes


organism_name: Klebsiella pneumoniae


organism_name: Klebsiella terrigena


excluded_from_refseq: many frameshifted proteins

organism_name: Klebsiella planticola


organism_name: Klebsiella ornithinolytica


organism_name: Klebsiella variicola


asm_submitter: Institute for Chemistry and Biology of the Marine Environment

isolate: Alteromonas macleodii BGP6

organism_name: Alteromonas macleodii


isolate: Alteromonas macleodii 83-1


organism_name: Peptoniphilus catoniae


asm_submitter: JLU

infraspecific_name: strain=type strain: ATCC27989

organism_name: Phytobacter ursingii


asm_submitter: IMGAG (Universitaetsklinikum Tuebingen)


asm_submitter: FRIEDRICH SCHILLER UNIVERSITY JENA

excluded_from_refseq: genus undefined

organism_name: Beijerinckiaceae bacterium RH CH11


organism_name: Beijerinckiaceae bacterium RH AL1


organism_name: Beijerinckiaceae bacterium RH AL8


isolate: Alteromonas macleodii BGP9


isolate: Alteromonas macleodii BGP14


isolate: Alteromonas macleodii EZ55


isolate: Alteromonas macleodii MIT1002


organism_name: Serratia rubidaea


organism_name: Leclercia adecarboxylata


organism_name: Proteus vulgaris


organism_name: Pseudomonas aeruginosa


organism_name: Escherichia coli


excluded_from_refseq: unverified source organism; annotation fails completeness check; not used as type

organism_name: Haemophilus haemolyticus


organism_name: Stenotrophomonas maltophilia


organism_name: Enterococcus hirae


organism_name: Serratia fonticola


asm_submitter: AIT AUSTRIAN INSTITUTE OF TECHNOLOGY

organism_name: Acinetobacter baumannii


organism_name: Klebsiella aerogenes


excluded_from_refseq: unverified source organism; annotation fails completeness check; many frameshifted proteins

organism_name: Bacteroides fragilis


organism_name: Klebsiella pneumoniae


organism_name: Proteus mirabilis


organism_name: Enterobacter cloacae


asm_submitter: Genoscope CEA

excluded_from_refseq: low quality sequence

infraspecific_name: strain=xyz

organism_name: Desulfosarcina cetonica


excluded_from_refseq: contaminated


asm_submitter: UNIMI


asm_submitter: DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University

organism_name: Gemmataceae bacterium


excluded_from_refseq: unverified source organism

organism_name: Enterococcus casseliflavus


excluded_from_refseq: unverified source organism; genome length too large

organism_name: Staphylococcus hyicus


isolate: efaVREM

organism_name: Enterococcus faecium


isolate: kpnS


organism_name: Actinobacillus indolicus


asm_submitter: UANTW

organism_name: Lacticaseibacillus rhamnosus


organism_name: Dolosigranulum pigrum


organism_name: Leuconostoc pseudomesenteroides


asm_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

organism_name: Escherichia coli


excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Prevotella sp.


organism_name: Streptococcus salivarius


organism_name: Xylophilus ampelinus


asm_submitter: Institut Cavanilles de Biodiversitat i Biologia Evolutiva (ICBiBE) de la Universitat de Valencia

excluded_from_refseq: contaminated; genus undefined

organism_name: Bacteroidaceae bacterium


excluded_from_refseq: genome length too small

organism_name: Klebsiella sp. NCTC 9187


asm_submitter: MALAYSIA GENOME INSTITUTE

excluded_from_refseq: annotation fails completeness check

organism_name: Burkholderia pseudomallei


asm_name: CECT 9533

asm_submitter: UVEG

excluded_from_refseq: contaminated; not used as type

organism_name: Thalassocella blandensis


asm_submitter: RADBOUD UNIVERSITY NIJMEGEN

organism_name: Methylacidimicrobium tartarophylax


organism_name: Methylacidimicrobium cyclopophantes


asm_submitter: UNIVERSITY OF KONSTANZ

isolate: Dyadobacter sp. 32 sample 2

organism_name: Dyadobacter sp. 32


asm_submitter: UNIVERSITY COLLEGE LONDON

organism_name: Rhizobium sp. P007


organism_name: Pseudorhizobium halotolerans


organism_name: Pseudorhizobium endolithicum


organism_name: Rhizobium sp. Q54


asm_submitter: Institut Pasteur

excluded_from_refseq: contaminated; genome length too small

organism_name: Klebsiella huaxiensis


asm_name: MOIL

asm_submitter: Max Planck Institute for Marine Microbiology

excluded_from_refseq: derived from metagenome

organism_name: Candidatus Methanolliviera sp. GoM_oil


asm_name: MASP

organism_name: Candidatus Methanolliviera sp. GoM_asphalt


organism_name: Candidatus Syntropharchaeum sp. GoM_oil


asm_submitter: SC

organism_name: Klebsiella michiganensis


organism_name: Enterococcus gallinarum


organism_name: Klebsiella grimontii


excluded_from_refseq: contaminated; unverified source organism

organism_name: Klebsiella oxytoca


excluded_from_refseq: unverified source organism; annotation fails completeness check


organism_name: Escherichia coli


organism_name: Enterococcus faecalis


organism_name: Citrobacter freundii


organism_name: Clostridium perfringens


organism_name: Clostridium butyricum


organism_name: Klebsiella pneumoniae


organism_name: Enterococcus casseliflavus


asm_submitter: Instituto de Salud Carlos III

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

isolate: Klebsiella pneumoniae


asm_submitter: UU

organism_name: Anaerosphaera massiliensis


asm_submitter: NIOO KNAW

organism_name: Chitinophaga pinensis


asm_submitter: The Edison Family Center for Genome Sciences and Systems Biology

organism_name: Streptococcus thermophilus


asm_submitter: The Edison Family Center of Genome Sciences and Systems Biology

organism_name: Streptococcus gordonii


organism_name: Escherichia fergusonii


organism_name: Faecalibacterium prausnitzii


organism_name: Streptococcus pasteurianus


organism_name: Bifidobacterium catenulatum


organism_name: Bifidobacterium pseudocatenulatum


organism_name: Lacrimispora amygdalina


asm_submitter: Institute of Biological Research Clemente Estable

organism_name: Kosakonia radicincitans


excluded_from_refseq: many frameshifted proteins

organism_name: Shinella sp. UYSO24


organism_name: uncultured Cellvibrio sp.


organism_name: uncultured Flavobacterium sp.


organism_name: uncultured Hydrogenophaga sp.


excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Candidatus Melainabacteria bacterium


organism_name: uncultured Chryseobacterium sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: uncultured Pseudomonas sp.


asm_submitter: INSTITUT PASTEUR

organism_name: Yersinia frederiksenii


organism_name: Yersinia kristensenii


organism_name: Yersinia massiliensis


infraspecific_name: strain=PAK

organism_name: Pseudomonas aeruginosa PAK


excluded_from_refseq: RefSeq annotation failed

organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


asm_submitter: URMITE

organism_name: Mycobacterium tuberculosis variant bovis BCG


asm_submitter: CEBITEC

infraspecific_name: strain=Pseudomonas carnis

organism_name: Pseudomonas carnis


asm_submitter: EMG

excluded_from_refseq: genus undefined

organism_name: Enterobacteriaceae bacterium


organism_name: Rikenellaceae bacterium


organism_name: Enterobacter mori


organism_name: Ligilactobacillus murinus


organism_name: Lactobacillaceae bacterium


organism_name: Staphylococcus xylosus


organism_name: Clostridium butyricum


organism_name: Mammaliicoccus lentus


organism_name: Coriobacteriaceae bacterium


organism_name: Oscillospiraceae bacterium


excluded_from_refseq: unverified source organism

organism_name: Terrisporobacter glycolicus


organism_name: Coprococcus eutactus


organism_name: Latilactobacillus curvatus


organism_name: Clostridia bacterium


organism_name: Bacillus subtilis


organism_name: Lactobacillus johnsonii


organism_name: Clostridiaceae bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Anaerotruncus colihominis


organism_name: Anaerostipes hadrus


organism_name: Hungatella hathewayi


organism_name: Paraclostridium bifermentans


organism_name: Staphylococcus nepalensis


organism_name: Eubacteriaceae bacterium


organism_name: Gardnerella vaginalis


organism_name: Blautia hydrogenotrophica


organism_name: Streptococcus parasanguinis


organism_name: Faecalibacterium prausnitzii


organism_name: Oscillospiraceae bacterium


organism_name: Dorea longicatena


organism_name: Bacteroides finegoldii


organism_name: Mitsuokella jalaludinii


organism_name: Turicibacter sanguinis


organism_name: Lachnospiraceae bacterium


organism_name: Catenibacterium mitsuokai


organism_name: Bacteroidaceae bacterium


organism_name: Bacillota bacterium


organism_name: Parabacteroides merdae


organism_name: Veillonellaceae bacterium


organism_name: Clostridiales bacterium


organism_name: Clostridiaceae bacterium


organism_name: Bacteroides acidifaciens


organism_name: Porphyromonadaceae bacterium


organism_name: Rikenellaceae bacterium


organism_name: Muribaculaceae bacterium


organism_name: Sarcina ventriculi


organism_name: Clostridium disporicum


organism_name: Lachnospira eligens


organism_name: Intestinibacter bartlettii


organism_name: Eubacteriaceae bacterium


organism_name: Collinsella aerofaciens


organism_name: Clostridium baratii


organism_name: [Clostridium] leptum


organism_name: Roseburia intestinalis


organism_name: Oscillospiraceae bacterium


organism_name: Caryophanales bacterium


organism_name: Anaerostipes caccae


organism_name: Corynebacterium propinquum


organism_name: Acinetobacter lwoffii


organism_name: Peribacillus simplex


organism_name: Clostridiaceae bacterium


organism_name: Clostridiales bacterium


organism_name: Gemmiger formicilis


organism_name: Achromobacter xylosoxidans


organism_name: Streptococcus lutetiensis


organism_name: Coriobacteriaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Klebsiella michiganensis


organism_name: Leuconostocaceae bacterium


organism_name: Ligilactobacillus animalis


organism_name: Bacteroides bouchesdurhonensis


organism_name: Veillonellaceae bacterium


organism_name: Micrococcus luteus


organism_name: Bacillota bacterium


organism_name: Peptostreptococcaceae bacterium


organism_name: Citrobacter freundii


organism_name: Actinomycetaceae bacterium


organism_name: Streptococcaceae bacterium


organism_name: Cutibacterium acnes


organism_name: Bacteroides clarus


organism_name: Enterobacteriaceae bacterium


organism_name: Enterococcus gallinarum


organism_name: Klebsiella oxytoca


organism_name: Clostridiaceae bacterium


organism_name: Streptococcus salivarius


organism_name: Bacteroidales bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Caryophanales bacterium


organism_name: Staphylococcus epidermidis


organism_name: Eubacterium callanderi


organism_name: Bacillota bacterium


organism_name: Blautia producta


organism_name: Peptoniphilaceae bacterium


organism_name: Clostridium tyrobutyricum


organism_name: Oscillospiraceae bacterium


organism_name: Rikenellaceae bacterium


organism_name: Peptoniphilus harei


organism_name: Clostridia bacterium


organism_name: Anaerotruncus rubiinfantis


organism_name: Erysipelotrichaceae bacterium


organism_name: Clostridiaceae bacterium


organism_name: Parabacteroides johnsonii


organism_name: Murimonas intestini


organism_name: Lachnospiraceae bacterium


organism_name: Clostridium paraputrificum


organism_name: Turicibacter sanguinis


organism_name: Bacteroidaceae bacterium


organism_name: Dorea formicigenerans


organism_name: Bacillus paralicheniformis


organism_name: Hungatella hathewayi


organism_name: Eubacteriaceae bacterium


organism_name: Collinsella aerofaciens


organism_name: Paraclostridium sordellii


organism_name: Weissella confusa


organism_name: Coriobacteriaceae bacterium


organism_name: Enterococcus asini


organism_name: Rikenellaceae bacterium


organism_name: Clostridiaceae bacterium


organism_name: Lactobacillus amylovorus


organism_name: Limosilactobacillus fermentum


organism_name: Bacteroidales bacterium


organism_name: Enterococcus durans


organism_name: Solobacterium moorei


organism_name: Enterocloster lavalensis


organism_name: Clostridiales bacterium


organism_name: Faecalicatena orotica


organism_name: Veillonellaceae bacterium SB90


organism_name: Bacillota bacterium


organism_name: Heyndrickxia coagulans


organism_name: Erysipelotrichaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Holdemania filiformis


organism_name: Coriobacteriaceae bacterium


organism_name: Clostridiaceae bacterium


organism_name: Enterocloster citroniae


excluded_from_refseq: genus undefined; many frameshifted proteins


organism_name: Faecalibacterium prausnitzii


organism_name: Bacteroides thetaiotaomicron


organism_name: Streptococcus parasanguinis


organism_name: Eubacteriaceae bacterium


organism_name: Butyricimonas virosa


organism_name: Collinsella aerofaciens


organism_name: Bacteroides intestinalis


organism_name: Eubacterium ventriosum


organism_name: Acidaminococcaceae bacterium


organism_name: Blautia obeum


excluded_from_refseq: unverified source organism; many frameshifted proteins

organism_name: Veillonella dispar


organism_name: Eubacterium limosum


organism_name: Parabacteroides bouchesdurhonensis


organism_name: Leyella stercorea


excluded_from_refseq: contaminated; genus undefined

organism_name: Clostridiales bacterium


organism_name: Bacteroidales bacterium


organism_name: Coriobacteriaceae bacterium


organism_name: Coprococcus eutactus


organism_name: Erysipelotrichaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Sutterellaceae bacterium


organism_name: Bacteroides stercoris


organism_name: Lactococcus lactis


organism_name: Lactococcus garvieae


organism_name: Bacillus sonorensis


organism_name: Enterobacteriaceae bacterium


organism_name: Clostridiaceae bacterium


organism_name: Vagococcus teuberi


organism_name: Desulfovibrionaceae bacterium


organism_name: Eubacteriaceae bacterium


organism_name: Bacteroides fragilis


organism_name: Enterococcus casseliflavus


organism_name: Mediterraneibacter torques


organism_name: Phocaeicola massiliensis


organism_name: Fusicatenibacter saccharivorans


organism_name: Weissella cibaria


organism_name: Collinsella intestinalis


organism_name: Streptococcus pasteurianus


organism_name: Blautia obeum


organism_name: Anaerobutyricum hallii


organism_name: Odoribacter splanchnicus


organism_name: Coriobacteriaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Clostridiaceae bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: Collinsella aerofaciens


organism_name: Caryophanales bacterium


organism_name: Bacteroides nordii


organism_name: Bacillota bacterium


organism_name: Clostridia bacterium


organism_name: Roseburia inulinivorans


organism_name: Clostridiales bacterium


organism_name: Prevotellaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Veillonellaceae bacterium


organism_name: Phocaeicola coprophilus


organism_name: Streptococcus mutans


organism_name: Actinomycetes bacterium


organism_name: Lachnospira eligens


excluded_from_refseq: contaminated; genus undefined; many frameshifted proteins


organism_name: Oscillospiraceae bacterium


organism_name: uncultured Rothia sp.


organism_name: uncultured Caulobacter sp.


organism_name: uncultured Sphingomonas sp.


organism_name: uncultured Acidovorax sp.


organism_name: uncultured Pseudomonas sp.


organism_name: uncultured Megasphaera sp.


organism_name: uncultured Scardovia sp.


organism_name: uncultured Bilophila sp.


organism_name: uncultured Actinomyces sp.


organism_name: Finegoldia magna


organism_name: uncultured Gardnerella sp.


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Veillonella sp.


organism_name: Desulfovibrionaceae bacterium


organism_name: Sutterellaceae bacterium


organism_name: [Clostridium] scindens


organism_name: Pediococcus acidilactici


organism_name: Amedibacillus dolichus


organism_name: Parvimonas micra


organism_name: Faecalibacterium prausnitzii


organism_name: Alistipes putredinis


organism_name: Listeria grayi


organism_name: Campylobacter coli


organism_name: Clostridium sporogenes


organism_name: Streptococcus equinus


organism_name: Anaerofustis stercorihominis


organism_name: Phocaeicola coprocola


organism_name: Thomasclavelia spiroformis


organism_name: Providencia stuartii


organism_name: Peptostreptococcaceae bacterium


organism_name: Bacteroides eggerthii


organism_name: Eshraghiella crossota


organism_name: Fusobacterium ulcerans


organism_name: Helicobacter pullorum


organism_name: [Bacteroides] pectinophilus


organism_name: Citrobacter youngae


organism_name: Fusobacterium nucleatum


organism_name: Desulfovibrio piger


organism_name: Mitsuokella multacida


organism_name: [Ruminococcus] lactaris


organism_name: Fusobacterium gonidiaformans


organism_name: Subdoligranulum variabile


organism_name: Fusobacterium periodonticum


organism_name: Allocoprococcus comes


organism_name: Providencia rettgeri


organism_name: Clostridiales bacterium


organism_name: Clostridium tertium


organism_name: Enterobacter cancerogenus


organism_name: Oxalobacter formigenes


organism_name: Helicobacter bilis


organism_name: Helicobacter winghamensis


organism_name: Lentilactobacillus hilgardii


organism_name: [Clostridium] methylpentosum


organism_name: Bacteroides uniformis


organism_name: Acetomicrobium hydrogeniformans


organism_name: Veillonella parvula


organism_name: Acinetobacter radioresistens


organism_name: Weissella paramesenteroides


organism_name: Streptococcus gordonii


organism_name: Bacteroides xylanisolvens


organism_name: Acinetobacter junii


organism_name: Bacteroides fragilis


organism_name: Lactobacillaceae bacterium


organism_name: Leuconostoc mesenteroides


organism_name: Lachnospiraceae bacterium


organism_name: Lactobacillus ultunensis


organism_name: Ligilactobacillus ruminis


organism_name: Erysipelotrichaceae bacterium


organism_name: Bifidobacterium dentium


organism_name: Collinsella aerofaciens


organism_name: Edwardsiella tarda


organism_name: Fusobacterium periodonticum


organism_name: Streptococcus equinus


organism_name: Segatella salivae


organism_name: Campylobacter upsaliensis


organism_name: Sutterella wadsworthensis


organism_name: Oscillospiraceae bacterium


organism_name: Bilophila wadsworthia


organism_name: Streptococcus anginosus


organism_name: Anaerococcus hydrogenalis


organism_name: Dysgonomonas gade


organism_name: [Clostridium] symbiosum


organism_name: Bacteroides fluxus


organism_name: Lactobacillus delbrueckii


organism_name: Succinatimonas hippei


excluded_from_refseq: genome length too large

organism_name: Faecalicatena fissicatena


organism_name: Paraprevotella xylaniphila


organism_name: Phocaeicola plebeius


organism_name: Phascolarctobacterium succinatutens


organism_name: Lachnospiraceae bacterium


organism_name: Paenibacillaceae bacterium


organism_name: Bacteroides ovatus


organism_name: Mediterraneibacter gnavus


organism_name: Dysgonomonas mossii


organism_name: Lactobacillus iners


organism_name: Neisseria macacae


organism_name: Ralstonia pickettii


organism_name: Collinsella tanakaei


organism_name: Coprobacter fastidiosus


organism_name: Bacillus smithii


organism_name: Hafniaceae bacterium


organism_name: Listeria innocua


organism_name: Senegalimassilia anaerobia


organism_name: Alistipes indistinctus


organism_name: Yokenella regensburgei


organism_name: Cloacibacillus evryensis


organism_name: Campylobacter concisus


organism_name: Enterocloster clostridioformis


organism_name: Desulfitobacterium hafniense


organism_name: [Clostridium] innocuum


organism_name: Odoribacter laneus


organism_name: Erysipelotrichaceae bacterium


organism_name: Dialister succinatiphilus


organism_name: Eubacteriaceae bacterium


organism_name: Paenibacillus senegalensis


organism_name: Sutterella parvirubra


organism_name: Oceanobacillus massiliensis


organism_name: Coprobacillus cateniformis


organism_name: Sutterellaceae bacterium


organism_name: Alistipes communis


organism_name: Peptoniphilus obesi


organism_name: Kurthia massiliensis


organism_name: Slackia piriformis


organism_name: Actinomycetaceae bacterium


organism_name: Clostridium senegalense


organism_name: Robertmurraya massiliosenegalensis


organism_name: Brevibacterium senegalense


organism_name: Bacillus timonensis


organism_name: Coriobacteriaceae bacterium


organism_name: Clostridium celatum


organism_name: Bacteroides oleiciplenus


organism_name: Cellulomonas massiliensis


organism_name: Aeromicrobium massiliense


organism_name: Alistipes senegalensis


organism_name: Noviherbaspirillum massiliense


organism_name: Jonesiaceae bacterium iMX7


organism_name: Dielma fastidiosa


organism_name: Anaerococcus senegalensis


organism_name: Alistipes ihumii


organism_name: [Collinsella] massiliensis


organism_name: Helicobacter pylori


organism_name: Paenibacillaceae bacterium


organism_name: Staphylococcus schleiferi


organism_name: Holdemania massiliensis


organism_name: Bacillus massilioanorexius


organism_name: Butyricicoccus pullicaecorum


organism_name: Peptoniphilus senegalensis


organism_name: Phytobacter massiliensis


organism_name: Bacteroides salyersiae


organism_name: Streptococcaceae bacterium


organism_name: Actinomycetaceae bacterium


organism_name: Caryophanaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Cutibacterium avidum


organism_name: Streptomycetaceae bacterium


organism_name: Veillonella atypica


organism_name: Cedecea davisae


organism_name: Hoylesella oralis


organism_name: Paenibacillus antibioticophila


organism_name: Candidatus Stoquefichus massiliensis


organism_name: Clostridiaceae bacterium


organism_name: Aneurinibacillus aneurinilyticus


organism_name: Cetobacterium somerae


organism_name: Nesterenkonia massiliensis


organism_name: Eubacterium ramulus


organism_name: Nosocomiicoccus massiliensis


organism_name: Pseudomonadaceae bacterium


organism_name: Faecalitalea cylindroides


organism_name: Fusobacterium nucleatum


organism_name: Helicobacter macacae


organism_name: Bacteroides neonati


organism_name: Faecalispora jeddahensis


organism_name: Candidatus Blastococcus massiliensis


organism_name: Providencia alcalifaciens


organism_name: Neobacillus jeddahensis


organism_name: Bifidobacterium gallicum


organism_name: Bacillota bacterium


organism_name: Anaerosalibacter massiliensis


organism_name: Clostridium polynesiense


organism_name: Virgibacillus salexigens


organism_name: Coriobacteriaceae bacterium


organism_name: Clostridium amazonitimonense


organism_name: Oceanobacillus jeddahensis


organism_name: Bacillus rubiinfantis


organism_name: Actinomyces polynesiensis


organism_name: Tessaracoccus massiliensis


organism_name: Bacillaceae bacterium


organism_name: Nigerium massiliense


organism_name: Beduini massiliensis


organism_name: Mobilicoccus massiliensis


organism_name: Risungbinella massiliensis


organism_name: Pseudomonas massiliensis


organism_name: Clostridium phoceensis


organism_name: Dakarella massiliensis


organism_name: Lachnospiraceae bacterium


organism_name: Bacillus testis


organism_name: Rubeoparvulum massiliense


organism_name: Clostridium niameyense


organism_name: Enterocloster bolteae


organism_name: Faecalicatena contorta


organism_name: Enterococcus massiliensis


organism_name: Parabacteroides goldsteinii


organism_name: Peptoniphilaceae bacterium


organism_name: Porphyromonadaceae bacterium


organism_name: Bacillus andreraoultii


organism_name: Clostridiales bacterium


organism_name: Gorillibacterium timonense


organism_name: Lagierella massiliensis


organism_name: Paenibacillus ihumii


organism_name: Clostridiaceae bacterium


organism_name: Massilibacterium senegalense


organism_name: Flaviflexus massiliensis


organism_name: Lactobacillus amylolyticus


organism_name: Tissierellia bacterium


organism_name: Bacillaceae bacterium


organism_name: Limosilactobacillus antri


organism_name: Paenibacillus ihuae


organism_name: Numidum massiliense


organism_name: Bacteroidales bacterium


organism_name: Actinomycetaceae bacterium


organism_name: Atopobiaceae bacterium


organism_name: Vitreoscilla massiliensis


organism_name: Paenibacillus rubinfantis


organism_name: Gracilibacillus massiliensis


organism_name: Actinomycetes bacterium


organism_name: Allofournierella massiliensis


organism_name: Paenibacillus senegalimassiliensis


organism_name: Cellulomonas timonensis


organism_name: Neglectibacter timonensis


organism_name: Xanthomonas massiliensis


organism_name: Paenibacillus phocaeensis


organism_name: Pseudenterobacter timonensis


organism_name: Murdochiella massiliensis


organism_name: Corynebacterium provencense


organism_name: Clostridiaceae bacterium


organism_name: Peptoniphilus phoceensis


organism_name: Anaerococcus rubeinfantis


excluded_from_refseq: contaminated

organism_name: Sanguibacteroides justesenii


organism_name: Collinsella ihumii


organism_name: Emergencia timonensis


organism_name: Olegusella massiliensis


organism_name: Paenibacillus tuaregi


organism_name: Corynebacterium bouchesdurhonense


organism_name: Paenibacillaceae bacterium


organism_name: Rikenellaceae bacterium


organism_name: Christensenella timonensis


organism_name: Gracilibacillus timonensis


organism_name: Culturomica massiliensis


organism_name: Veillonellaceae bacterium


organism_name: Corynebacteriaceae bacterium 'ARUP UnID 227'


organism_name: Massilioclostridium coli


organism_name: Streptococcus timonensis


organism_name: Acidaminococcus massiliensis


organism_name: Prevotellaceae bacterium


organism_name: Megasphaera coli


organism_name: Alistipes timonensis


organism_name: Fusobacterium massiliense


organism_name: Clostridium mediterraneense


organism_name: Butyricimonas synergistica


organism_name: Ruminococcus gauvreauii


organism_name: Blautia producta


organism_name: Halorubrum lipolyticum


organism_name: Aeromonadaceae bacterium


organism_name: Aeromonas veronii


organism_name: Hungatella hathewayi


organism_name: Marvinbryantia formatexigens


organism_name: Oceanobacillus picturae


organism_name: Thomasclavelia saccharogumia


organism_name: Citrobacter sedlakii


organism_name: Clostridium ihumii


organism_name: Corynebacterium afermentans


organism_name: Enterococcus raffinosus


organism_name: Vibrio fluvialis


organism_name: [Clostridium] hylemonae


organism_name: Providencia rustigianii


organism_name: Holdemanella biformis


organism_name: Vibrio furnissii


organism_name: Clostridiaceae bacterium


organism_name: Bacillus thuringiensis


organism_name: Collinsella stercoris


organism_name: Enterococcus faecalis


organism_name: Lachnospiraceae bacterium


organism_name: Corynebacteriaceae bacterium 'ARUP UnID 227'


organism_name: Pseudocoprococcus catus


organism_name: uncultured Desulfovibrio sp.


organism_name: Methanobrevibacter oralis


organism_name: Erysipelotrichaceae bacterium


organism_name: Peptoniphilaceae bacterium


organism_name: Prevotellaceae bacterium


organism_name: Faecalibacterium prausnitzii


organism_name: Eubacteriaceae bacterium


organism_name: Bacillota bacterium


organism_name: Bacteroidaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Clostridiaceae bacterium


organism_name: Bacillus luti


organism_name: Streptococcaceae bacterium


organism_name: Coriobacteriaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Enterococcaceae bacterium


organism_name: Anaerococcus vaginalis


organism_name: Tissierellia bacterium


organism_name: Enterobacteriaceae bacterium


organism_name: Alkalihalobacillus alcalophilus


organism_name: Clostridia bacterium


organism_name: Veillonellaceae bacterium


organism_name: Campylobacter coli


organism_name: Clostridiales bacterium


organism_name: Moraxellaceae bacterium


organism_name: Clostridioides difficile


organism_name: Rikenellaceae bacterium


excluded_from_refseq: annotation fails completeness check

organism_name: Stenotrophomonas maltophilia


organism_name: Akkermansiaceae bacterium


organism_name: Eubacteriaceae bacterium


organism_name: Bacilli bacterium


organism_name: Staphylococcaceae bacterium


organism_name: Prevotellaceae bacterium


organism_name: Gordonibacter massiliensis (ex Traore et al. 2017)


organism_name: Paenibacillaceae bacterium


organism_name: Bacillus massilinigeriensis


organism_name: Christensenellaceae bacterium


organism_name: Corynebacteriaceae bacterium 'ARUP UnID 227'


organism_name: Atopobiaceae bacterium


organism_name: Bacteroidales bacterium


organism_name: Varibaculum timonense


organism_name: Enterobacteriaceae bacterium


organism_name: Oscillospiraceae bacterium


organism_name: Campylobacter concisus


organism_name: Clostridiaceae bacterium


organism_name: Clostridiales bacterium


organism_name: Campylobacteraceae bacterium


organism_name: Alcaligenaceae bacterium


organism_name: Eggerthellaceae bacterium


organism_name: Caryophanaceae bacterium


organism_name: Sutterellaceae bacterium


organism_name: Lachnospiraceae bacterium


organism_name: Helicobacteraceae bacterium


organism_name: Akkermansia muciniphila


organism_name: Bacillota bacterium


organism_name: Atopobiaceae bacterium


organism_name: Yersiniaceae bacterium


organism_name: Yersinia frederiksenii


organism_name: Victivallis vadensis


organism_name: Enterobacteriaceae bacterium


organism_name: Yersinia kristensenii


organism_name: Stenotrophomonas maltophilia


organism_name: Lacrimispora saccharolytica


organism_name: Citrobacter freundii


organism_name: Enterobacter cloacae


organism_name: Eggerthellaceae bacterium


organism_name: Serratia marcescens


excluded_from_refseq: genome length too small

organism_name: Butyrivibrio fibrisolvens


organism_name: Citrobacter werkmanii


organism_name: Enterobacterales bacterium


organism_name: Oscillospiraceae bacterium


excluded_from_refseq: RefSeq annotation failed; derived from metagenome

organism_name: uncultured Haemophilus sp.


organism_name: uncultured Romboutsia sp.


organism_name: Coriobacteriaceae bacterium


organism_name: Prevotella disiens


organism_name: Lachnospiraceae bacterium


organism_name: Erysipelotrichaceae bacterium


organism_name: Paenibacillus polymyxa


organism_name: Clostridiaceae bacterium


organism_name: Bacteroidales bacterium


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Faecalicoccus sp.


organism_name: uncultured Alistipes sp.


asm_submitter: INRA Tours

organism_name: Mycobacterium tuberculosis variant bovis


asm_submitter: Univeristy of Aberdeen

organism_name: Campylobacter concisus


organism_name: uncultured Blautia sp.


organism_name: uncultured Peptostreptococcus sp.


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: uncultured Prevotella sp.


organism_name: uncultured Varibaculum sp.


organism_name: uncultured Enterococcus sp.


organism_name: uncultured Cetobacterium sp.


excluded_from_refseq: derived from metagenome


organism_name: uncultured Dysgonomonas sp.


organism_name: uncultured Catenibacterium sp.


organism_name: uncultured Niameybacter sp.


excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Fusobacterium sp.


organism_name: uncultured Eubacterium sp.


organism_name: uncultured Merdimonas sp.


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Haemophilus sp.


organism_name: uncultured Ruminococcus sp.


organism_name: uncultured Christensenella sp.


organism_name: uncultured Eisenbergiella sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Alistipes sp.


organism_name: uncultured Anaerotignum sp.


organism_name: uncultured Marvinbryantia sp.


organism_name: uncultured Selenomonas sp.


organism_name: uncultured Gemmiger sp.


organism_name: uncultured Blautia sp.


organism_name: uncultured Anaerocolumna sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Bariatricus sp.


organism_name: uncultured Anaerosporobacter sp.


organism_name: uncultured Dialister sp.


organism_name: uncultured Stomatobaculum sp.


organism_name: uncultured Streptococcus sp.


organism_name: uncultured Leclercia sp.


organism_name: uncultured Corynebacterium sp.


organism_name: uncultured Catenibacterium sp.


organism_name: uncultured Enterobacter sp.


organism_name: uncultured Finegoldia sp.


organism_name: uncultured Oscillibacter sp.


organism_name: uncultured Lachnoclostridium sp.


organism_name: uncultured Campylobacter sp.


organism_name: uncultured Stenotrophomonas sp.


organism_name: uncultured Serratia sp.


organism_name: uncultured Gardnerella sp.


organism_name: uncultured Peptostreptococcus sp.


organism_name: uncultured Prevotella sp.


organism_name: uncultured Peptoniphilus sp.


organism_name: uncultured Porphyromonas sp.


organism_name: uncultured Criibacterium sp.


organism_name: uncultured Agathobaculum sp.


organism_name: uncultured Terrisporobacter sp.


organism_name: Faecalibacterium prausnitzii


asm_submitter: JOHN INNES CENTRE, NORWICH, UK.

organism_name: Pseudomonas fluorescens


asm_submitter: Quadram Institute Bioscience

isolate: Dwuxii

organism_name: Desulfovibrio diazotrophicus


asm_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID

organism_name: Escherichia coli


excluded_from_refseq: contaminated; RefSeq annotation failed


asm_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

organism_name: Collinsella aerofaciens


asm_submitter: RIVM - National Institute for Public Health and the Environment


asm_submitter: UNIVERSITY COLLEGE LONDON

infraspecific_name: strain=TCK

organism_name: Rhizobium sp. TCK


organism_name: Pseudorhizobium flavum


organism_name: arsenite-oxidising bacterium NT-25


organism_name: Rhizobium sp. Khangiran2


excluded_from_refseq: annotation fails completeness check; many frameshifted proteins


asm_submitter: Elham Karimi

isolate: Bacillus sp. 349Y

organism_name: Bacillus sp. 349Y


isolate: Moraxellaceae bacterium 17A

organism_name: Moraxellaceae bacterium 17A


isolate: Enhydrobacter sp. 8BJ

organism_name: Enhydrobacter sp. 8BJ


isolate: Enhydrobacter sp. AX1

organism_name: Enhydrobacter sp. AX1


isolate: Burkholderiales bacterium 8X

organism_name: Burkholderiales bacterium 8X


isolate: Oceanicaulis sp. 350

organism_name: Oceanicaulis sp. 350


organism_name: Mycobacterium tuberculosis variant bovis


asm_submitter: ZHEJIANG UNIVERSITY

organism_name: Klebsiella pneumoniae


asm_submitter: UNIVERSITY OF MELBOURNE

excluded_from_refseq: RefSeq annotation failed

infraspecific_name: strain=none

organism_name: Staphylococcus epidermidis


asm_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

excluded_from_refseq: derived from metagenome; genus undefined

organism_name: Paracoccaceae bacterium


organism_name: Actinomycetes bacterium


organism_name: Planctomycetaceae bacterium


organism_name: Puniceicoccaceae bacterium


organism_name: K189A clade bacterium


organism_name: Candidatus Marinamargulisbacteria bacterium SCGC AG-333-B06


organism_name: Halieaceae bacterium


organism_name: Porticoccaceae bacterium


organism_name: uncultured Prochlorococcus sp.


organism_name: Rhodospirillaceae bacterium


organism_name: Planctomycetota bacterium


organism_name: Candidatus Marinamargulisbacteria bacterium SCGC AG-343-D04


excluded_from_refseq: genus undefined


organism_name: Legionellales bacterium


organism_name: Candidatus Marinamargulisbacteria bacterium SCGC AG-343-K17


excluded_from_refseq: genome length too small; genus undefined


organism_name: BD1-7 clade bacterium


organism_name: Thiotrichales bacterium


organism_name: Candidatus Marinamargulisbacteria bacterium SCGC AG-410-N11


organism_name: Paracoccaceae bacterium


organism_name: Candidatus Marinamargulisbacteria bacterium SCGC AG-414-C22


organism_name: Actinomycetes bacterium


organism_name: Planctomycetaceae bacterium


organism_name: Puniceicoccaceae bacterium


organism_name: Hydrogenophilales bacterium


organism_name: Halieaceae bacterium


organism_name: K189A clade bacterium


organism_name: Coxiellaceae bacterium


organism_name: Kiritimatiellia bacterium


organism_name: Porticoccaceae bacterium


organism_name: Planctomycetota bacterium


organism_name: Rhodospirillaceae bacterium


organism_name: uncultured Prochlorococcus sp.


organism_name: Candidatus Marinamargulisbacteria bacterium SCGC AG-439-L15


asm_submitter: The Edison Family Center of Genome Sciences and Systems Biology

organism_name: Schaalia odontolytica


asm_submitter: UNIVERSITY OF LEICESTER

organism_name: Escherichia coli


asm_submitter: SC

organism_name: Klebsiella pneumoniae


asm_name: Combinated assembly ONT-Illumina

asm_submitter: INRA (INRA Centre Val de Loire)

isolate: 1 day old chicken


asm_name: Halioglobus sp. strain BC5_1

asm_submitter: UNIVERSITY OF BRITISH COLUMBIA

organism_name: Halioglobus japonicus


organism_name: BD1-7 clade bacterium


asm_name: BD1-7 clade bacteriaum strain BC5_2


asm_submitter: IMPERIAL COLLEGE LONDON

organism_name: Scandinavium goeteborgense


excluded_from_refseq: unverified source organism

organism_name: Serratia sp. 18057


organism_name: Chryseobacterium sp. 18061


organism_name: Citrobacter sp. 18056


organism_name: Pseudomonas sp. 18047


excluded_from_refseq: contaminated; genome length too large

organism_name: Klebsiella sp. 18102


asm_submitter: Radboud University Nijmegen

organism_name: Methylobacterium bullatum


isolate: mbra

organism_name: Methylobacterium brachiatum


asm_submitter: Friedrich Schiller University Jena

isolate: Acidiphilium sp. C61

organism_name: Acidiphilium sp. C61


asm_submitter: HUJI

infraspecific_name: ecotype=Ficus benjamina population

isolate: PeMo

organism_name: Candidatus Portiera aleyrodidarum


asm_submitter: CNRS

organism_name: Rhodospirillaceae bacterium LM-1


asm_submitter: CBMSO

excluded_from_refseq: unverified source organism; partial

genome_rep: Partial

organism_name: Shewanella hafniensis


asm_submitter: UVEG

infraspecific_name: strain=CECT 9293

organism_name: Chryseobacterium potabilaquae


asm_name: Rumen uncultured genome RUG10038

asm_submitter: THE ROSLIN INSTITUTE

excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small

organism_name: Eubacterium pyruvativorans


asm_name: Rumen uncultured genome RUG10060

excluded_from_refseq: derived from metagenome; genome length too small

organism_name: Ruminococcus flavefaciens


asm_name: Rumen uncultured genome RUG10062

organism_name: Fibrobacter succinogenes


asm_name: Rumen uncultured genome RUG10074

organism_name: Dongibacter bovis


asm_name: Rumen uncultured genome RUG10107

organism_name: uncultured Prevotella sp.


asm_name: Rumen uncultured genome RUG10149


asm_name: Rumen uncultured genome RUG10152


asm_name: Rumen uncultured genome RUG10184


asm_name: Rumen uncultured genome RUG10205


asm_name: Rumen uncultured genome RUG10213

organism_name: Sharpea azabuensis


asm_name: Rumen uncultured genome RUG10265


asm_name: Rumen uncultured genome RUG10281


asm_name: Rumen uncultured genome RUG10364


asm_name: Rumen uncultured genome RUG10383


asm_name: Rumen uncultured genome RUG10494

excluded_from_refseq: unverified source organism; derived from metagenome; genome length too small

organism_name: Eubacterium ruminantium


asm_name: Rumen uncultured genome RUG10533


asm_name: Rumen uncultured genome RUG10557

organism_name: uncultured Megasphaera sp.


asm_name: Rumen uncultured genome RUG10583


asm_name: Rumen uncultured genome RUG10576


asm_name: Rumen uncultured genome RUG10593

organism_name: uncultured Bifidobacterium sp.


asm_name: Rumen uncultured genome RUG10598

excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome; genome length too small; many frameshifted proteins


asm_name: Rumen uncultured genome RUG10602


asm_name: Rumen uncultured genome RUG10636


asm_name: Rumen uncultured genome RUG10650


asm_name: Rumen uncultured genome RUG10686

organism_name: uncultured Ruminococcus sp.


asm_name: Rumen uncultured genome RUG10718


asm_name: Rumen uncultured genome RUG10726

excluded_from_refseq: RefSeq annotation failed; derived from metagenome


asm_name: Rumen uncultured genome RUG10728


asm_name: Rumen uncultured genome RUG10752


asm_name: Rumen uncultured genome RUG10792


asm_name: Rumen uncultured genome RUG10798


asm_name: Rumen uncultured genome RUG10790


asm_name: Rumen uncultured genome RUG10802


asm_name: Rumen uncultured genome RUG10820


asm_name: Rumen uncultured genome RUG10819

organism_name: uncultured Mitsuokella sp.


asm_name: Rumen uncultured genome RUG10837


asm_name: Rumen uncultured genome RUG10898

organism_name: methanogenic archaeon


asm_name: Rumen uncultured genome RUG10976


asm_name: Rumen uncultured genome RUG11010


asm_name: Rumen uncultured genome RUG11173


asm_name: Rumen uncultured genome RUG11186


asm_name: Rumen uncultured genome RUG11184

organism_name: Lachnobacterium bovis


asm_name: Rumen uncultured genome RUG11295


asm_name: Rumen uncultured genome RUG11320


asm_name: Rumen uncultured genome RUG11357


asm_name: Rumen uncultured genome RUG11387


asm_name: Rumen uncultured genome RUG11468

excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: Ruminococcus bromii


asm_name: Rumen uncultured genome RUG11470


asm_name: Rumen uncultured genome RUG11489

excluded_from_refseq: derived from metagenome


asm_name: Rumen uncultured genome RUG11549

excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome


asm_name: Rumen uncultured genome RUG11560


asm_name: Rumen uncultured genome RUG11612


asm_name: Rumen uncultured genome RUG11627


asm_name: Rumen uncultured genome RUG11643


asm_name: Rumen uncultured genome RUG11671


asm_name: Rumen uncultured genome RUG11899


asm_name: Rumen uncultured genome RUG11914


asm_name: Rumen uncultured genome RUG11912

organism_name: Parafannyhessea umbonata


asm_name: Rumen uncultured genome RUG11972

organism_name: Pseudoselenomonas ruminantium


asm_name: Rumen uncultured genome RUG12000


asm_name: Rumen uncultured genome RUG12002


asm_name: Rumen uncultured genome RUG12006

organism_name: uncultured Streptococcus sp.


asm_name: Rumen uncultured genome RUG12028


asm_name: Rumen uncultured genome RUG12050


asm_name: Rumen uncultured genome RUG12079


asm_name: Rumen uncultured genome RUG12092


asm_name: Rumen uncultured genome RUG12100

organism_name: uncultured Methanobrevibacter sp.


asm_name: Rumen uncultured genome RUG12128

organism_name: uncultured Dialister sp.


asm_name: Rumen uncultured genome RUG12158


asm_name: Rumen uncultured genome RUG12208

organism_name: Fibrobacter succinogenes


asm_name: Rumen uncultured genome RUG12238

organism_name: Ruminococcus flavefaciens


asm_name: Rumen uncultured genome RUG12257

organism_name: uncultured Prevotella sp.


asm_name: Rumen uncultured genome RUG12282


asm_name: Rumen uncultured genome RUG12439


asm_name: Rumen uncultured genome RUG12527


asm_name: Rumen uncultured genome RUG12542


asm_name: Rumen uncultured genome RUG12626


asm_name: Rumen uncultured genome RUG12637


asm_name: Rumen uncultured genome RUG12664


asm_name: Rumen uncultured genome RUG12680

organism_name: Dongibacter bovis


asm_name: Rumen uncultured genome RUG12706

organism_name: Erysipelothrix rhusiopathiae


asm_name: Rumen uncultured genome RUG12729


asm_name: Rumen uncultured genome RUG12734


asm_name: Rumen uncultured genome RUG12744


asm_name: Rumen uncultured genome RUG13012


asm_name: Rumen uncultured genome RUG13045


asm_name: Rumen uncultured genome RUG13067


asm_name: Rumen uncultured genome RUG13068

organism_name: Sharpea azabuensis


asm_name: Rumen uncultured genome RUG13069

organism_name: uncultured Megasphaera sp.


asm_name: Rumen uncultured genome RUG13122


asm_name: Rumen uncultured genome RUG13114


asm_name: Rumen uncultured genome RUG13129

organism_name: Eubacterium pyruvativorans


asm_name: Rumen uncultured genome RUG13124


asm_name: Rumen uncultured genome RUG13176


asm_name: Rumen uncultured genome RUG13185


asm_name: Rumen uncultured genome RUG13203


asm_name: Rumen uncultured genome RUG13210


asm_name: Rumen uncultured genome RUG13205

organism_name: uncultured Ruminococcus sp.


asm_name: Rumen uncultured genome RUG13215


asm_name: Rumen uncultured genome RUG13229


asm_name: Rumen uncultured genome RUG13225

organism_name: Kandleria vitulina


asm_name: Rumen uncultured genome RUG13270

organism_name: methanogenic archaeon


asm_name: Rumen uncultured genome RUG13317


asm_name: Rumen uncultured genome RUG13337


asm_name: Rumen uncultured genome RUG13392


asm_name: Rumen uncultured genome RUG13420