organism_name: uncultured Vibrio sp.


annotation_provider: NCBI RefSeq

asm_submitter: WELLCOME SANGER INSTITUTE

assembly_level: Contig

assembly_type: haploid

excluded_from_refseq: RefSeq annotation failed; derived from metagenome

genome_rep: Full

group: bacteria

organism_name: uncultured Desulfarculus sp.

paired_asm_comp: identical

release_type: Major

version_status: suppressed


annotation_name: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

assembly_level: Complete Genome

excluded_from_refseq: derived from metagenome

organism_name: uncultured Paludibaculum sp.


organism_name: uncultured Desulfobacter sp.


organism_name: uncultured Cohaesibacter sp.


organism_name: uncultured Desulfobulbus sp.


organism_name: uncultured Draconibacterium sp.


group: archaea

organism_name: uncultured Methanolobus sp.


organism_name: Maridesulfovibrio sp.


organism_name: Labilibaculum manganireducens


organism_name: uncultured Sphaerochaeta sp.


organism_name: Cohaesibacter marisflavi

version_status: replaced


organism_name: uncultured Methanobacterium sp.


organism_name: uncultured Propionivibrio sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Desulfuromonas sp.


organism_name: uncultured Macellibacteroides sp.


organism_name: uncultured Acetobacteroides sp.


organism_name: uncultured Trichococcus sp.


organism_name: uncultured Dethiosulfovibrio sp.


organism_name: uncultured Methanoregula sp.


organism_name: uncultured Celeribacter sp.


organism_name: uncultured Methanocorpusculum sp.


organism_name: Draconibacterium orientale


organism_name: uncultured Ilyobacter sp.


organism_name: Marispirochaeta sp.


organism_name: uncultured Desulfosarcina sp.


organism_name: uncultured Draconibacterium sp.


organism_name: uncultured Carboxylicivirga sp.


organism_name: uncultured Methanospirillum sp.


organism_name: uncultured Anaeromusa sp.


organism_name: uncultured Pseudodesulfovibrio sp.


organism_name: uncultured Roseibium sp.


organism_name: uncultured Ruegeria sp.


organism_name: uncultured Methanolobus sp.


organism_name: uncultured Cohaesibacter sp.


organism_name: Desulfogranum marinum


organism_name: uncultured Sedimentibacter sp.


organism_name: uncultured Desulfobacter sp.


organism_name: uncultured Hyphomonas sp.


organism_name: Roseovarius pacificus


organism_name: Sedimenticola selenatireducens


organism_name: uncultured Vibrio sp.


organism_name: uncultured Trichococcus sp.


organism_name: uncultured Draconibacterium sp.


organism_name: uncultured Desulfuromusa sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Celeribacter sp.


organism_name: uncultured Rhodoferax sp.


organism_name: uncultured Sphaerochaeta sp.


organism_name: uncultured Tolumonas sp.


organism_name: uncultured Amphritea sp.


organism_name: uncultured Anaeromusa sp.


organism_name: uncultured Shewanella sp.


organism_name: uncultured Desulfuromonas sp.


organism_name: uncultured Methylophaga sp.


organism_name: uncultured Hyphomonas sp.


organism_name: uncultured Methanoregula sp.


organism_name: uncultured Allomuricauda sp.


organism_name: uncultured Desulfobacter sp.


organism_name: uncultured Marinifilum sp.


organism_name: uncultured Holophaga sp.


organism_name: uncultured Parasphingorhabdus sp.


organism_name: uncultured Draconibacterium sp.


organism_name: uncultured Bacteroides sp.


organism_name: uncultured Cohaesibacter sp.


organism_name: uncultured Pseudodesulfovibrio sp.


organism_name: Thiomicrorhabdus sp.


organism_name: uncultured Martelella sp.


organism_name: uncultured Acetobacteroides sp.


organism_name: uncultured Tolumonas sp.


organism_name: uncultured Sunxiuqinia sp.


organism_name: uncultured Methanomethylovorans sp.


organism_name: Breoghania sp.


organism_name: uncultured Vibrio sp.


organism_name: uncultured Methanoregula sp.


organism_name: uncultured Desulfuromonas sp.


organism_name: uncultured Hyphomonas sp.


organism_name: uncultured Sphaerochaeta sp.


organism_name: Rhodococcus qingshengii


organism_name: Alteromonas macleodii


asm_submitter: INRAE

assembly_level: Scaffold

excluded_from_refseq: genome length too small

organism_name: Escherichia coli


organism_name: uncultured Lichenicoccus sp.


asm_submitter: Nanjing Agriculture University

excluded_from_refseq: annotation fails completeness check; many frameshifted proteins

organism_name: Xenorhabdus nematophila


excluded_from_refseq: RefSeq annotation failed

organism_name: Vibrio sp. V18_P1S4T112


excluded_from_refseq: annotation fails completeness check


excluded_from_refseq: contaminated


excluded_from_refseq: unverified source organism

organism_name: Vibrio mimicus


organism_name: Vibrio splendidus


asm_submitter: EMG


asm_submitter: WAGENINGEN UNIVERSITY

excluded_from_refseq: many frameshifted proteins

isolate: Afasciculatus

organism_name: Aetherobacter fasciculatus


asm_submitter: the roslin institute (university of edinburgh)

excluded_from_refseq: derived from metagenome; genome length too small

isolate: metabat2_XCR1_HOM_6759_bwa.88 MAG

organism_name: Allofournierella massiliensis


isolate: metabat2_XCR1_HET_6758_bwa.5 MAG

organism_name: Odoribacter splanchnicus


asm_submitter: The Roslin Institute (University of Edinburgh)

excluded_from_refseq: derived from metagenome; genome length too large

isolate: metabat2_pooled_hifiasm.1075 MAG

organism_name: Succinatimonas hippei


asm_submitter: Graz University of Technology

infraspecific_name: strain=LKT-1 substr. G1

organism_name: Thermoanaerobacter kivui


excluded_from_refseq: unverified source organism; derived from metagenome

organism_name: uncultured Halomonas sp.


organism_name: uncultured Antarcticibacterium sp.


organism_name: uncultured Hoeflea sp.


organism_name: uncultured Rhodopirellula sp.


organism_name: uncultured Olleya sp.


asm_submitter: NHS Lothian

organism_name: Neisseria gonorrhoeae


organism_name: uncultured Pseudomonas sp.


excluded_from_refseq: contaminated; derived from metagenome

organism_name: Alteromonas macleodii


asm_submitter: Christian-Albrechts-University Kiel

excluded_from_refseq: annotation fails MAG completeness check; derived from metagenome

organism_name: uncultured Alistipes sp.


asm_submitter: BSNR

organism_name: Bacillus subtilis subsp. subtilis str. 168


asm_submitter: Democritus University of Thrace

isolate: M210 (MBG-DUTH)/FBUA 1272 (ELTE)

organism_name: Streptomyces purpurascens


organism_name: uncultured Rhodococcus sp.


organism_name: uncultured Brevundimonas sp.


asm_name: Cvaug

asm_submitter: CHUV HOSPITAL MICROBIOLOGY INSTITUTE

organism_name: Chlamydia vaughanii


excluded_from_refseq: genome length too large

organism_name: Candidatus Karelsulcia muelleri


asm_submitter: department of plant and microbial biology

organism_name: Acidovorax defluvii


asm_submitter: Comenius University Science Park

organism_name: Klebsiella pneumoniae


organism_name: Pseudomonas aeruginosa


organism_name: Staphylococcus haemolyticus


asm_submitter: Institut de recherche experimentale et clinique - IREC

excluded_from_refseq: from large multi-isolate project

organism_name: Vibrio cholerae


annotation_name: Annotation submitted by NCBI RefSeq


asm_submitter: University Hospital of North Norway

organism_name: Klebsiella oxytoca


asm_submitter: ELIXIR Norway

organism_name: Enterococcus lactis


organism_name: Enterococcus faecium


asm_submitter: IHU - Mediterranee Infection

organism_name: Thomasclavelia ramosa


asm_submitter: Friedrich-Loeffler-Institut

organism_name: Mycobacterium avium subsp. hominissuis


organism_name: Enterobacter hormaechei


organism_name: Providencia stuartii


asm_submitter: S. Gallicano Institute, IRCCS

organism_name: Borreliella garinii


organism_name: Borreliella afzelii


organism_name: Citrobacter freundii


organism_name: Klebsiella quasipneumoniae


organism_name: Staphylococcus epidermidis


organism_name: Enterococcus faecalis


asm_submitter: Tang lab

organism_name: Marisediminitalea sp.


organism_name: Pararhodobacter marinus


organism_name: Acinetobacter ursingii


organism_name: Escherichia coli


organism_name: Streptococcus pneumoniae


organism_name: Serratia marcescens


organism_name: Proteus mirabilis


organism_name: Enterococcus faecium


organism_name: Pseudomonas aeruginosa


organism_name: Enterobacter hormaechei


organism_name: Enterobacter asburiae


organism_name: Citrobacter werkmanii


organism_name: Acinetobacter baumannii


asm_submitter: University of York


asm_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

organism_name: Phocaeicola plebeius


organism_name: Morganella morganii


organism_name: Bacteroides finegoldii


organism_name: Ligilactobacillus ruminis S23


organism_name: Bacteroides stercoris


organism_name: Bacteroides xylanisolvens SD CC 1b


organism_name: Ruminococcus sp. Marseille-P328


excluded_from_refseq: unverified source organism; RefSeq annotation failed

organism_name: Bacteroides fragilis


organism_name: Fusobacterium nucleatum


organism_name: Streptococcus pneumoniae


asm_submitter: Spribille Lab

organism_name: uncultured Sphingomonas sp.


organism_name: Bacteroides uniformis


organism_name: Segatella copri


organism_name: Phocaeicola vulgatus


organism_name: Proteus mirabilis


organism_name: Pseudomonas aeruginosa PA99


organism_name: Enterobacter hormaechei


organism_name: Citrobacter freundii


organism_name: Serratia marcescens


asm_submitter: Aarhus University

organism_name: Ensifer adhaerens


organism_name: Variovorax paradoxus


organism_name: Mycolicibacterium frederiksbergense


organism_name: Clostridium perfringens SM101


organism_name: Enterococcus faecalis


organism_name: Bifidobacterium adolescentis ATCC 15703


organism_name: Bacteroides caccae CL03T12C61


organism_name: Bifidobacterium adolescentis


organism_name: Catenibacterium mitsuokai DSM 15897


organism_name: Collinsella aerofaciens ATCC 25986


organism_name: Clostridium perfringens CPE str. F4969


organism_name: Dorea longicatena


organism_name: Bifidobacterium longum


organism_name: Bacteroides uniformis


organism_name: Thomasclavelia spiroformis


organism_name: Faecalicatena contorta


organism_name: Bifidobacterium longum subsp. longum KACC 91563


organism_name: Collinsella bouchesdurhonensis


organism_name: Enterococcus faecium UC8668


organism_name: Lactococcus garvieae


organism_name: Catenibacterium mitsuokai


organism_name: Clostridium perfringens


organism_name: Bifidobacterium adolescentis ATCC 15703


organism_name: Enterococcus faecalis


organism_name: Bifidobacterium longum subsp. longum JCM 1217


organism_name: Bifidobacterium adolescentis


organism_name: Collinsella aerofaciens ATCC 25986


organism_name: Bacteroides caccae CL03T12C61


organism_name: Bacteroides faecis MAJ27


organism_name: Bifidobacterium longum


organism_name: Bacteroides thetaiotaomicron


organism_name: Phocaeicola vulgatus


organism_name: Escherichia coli IS25


organism_name: Escherichia coli


organism_name: Parabacteroides distasonis


organism_name: Phocaeicola plebeius DSM 17135


organism_name: Phocaeicola vulgatus ATCC 8482


organism_name: Bacteroides ovatus CL02T12C04


organism_name: Bacteroides eggerthii DSM 20697


organism_name: Bifidobacterium adolescentis ATCC 15703


asm_submitter: National Institute for Public Health and the Environment


asm_submitter: Quadram Institute Bioscience

organism_name: Salmonella enterica subsp. enterica serovar Agona


asm_submitter: Leiden University Medical Center

organism_name: Mediterraneibacter gnavus


organism_name: Campylobacter jejuni


organism_name: Campylobacter coli


asm_submitter: UTRECHT UNIVERSITY


organism_name: Enterobacter kobei


asm_submitter: WELLCOME SANGER INSTITUTE

organism_name: uncultured Kistimonas sp.


organism_name: Francisella salimarina


asm_submitter: NHS Lothian

organism_name: Neisseria gonorrhoeae


organism_name: Roseibium alexandrii


asm_submitter: Estonian Genome Centre, Institute of Genomics, University of Tartu

organism_name: Methanomethylophilus alvi


organism_name: Candidatus Methanarcanum hacksteinii


excluded_from_refseq: contaminated; annotation fails completeness check


asm_submitter: EMG

excluded_from_refseq: derived from metagenome

organism_name: Limosilactobacillus ingluviei


organism_name: Alistipes ihumii


organism_name: Bifidobacterium pullorum


organism_name: Methanobrevibacter woesei


organism_name: Faecalicoccus acidiformans


organism_name: Helicobacter pullorum


organism_name: Phocaeicola coprophilus


organism_name: Phocaeicola plebeius


organism_name: Anaerotignum lactatifermentans


organism_name: Megamonas hypermegale


organism_name: Lactobacillus kitasatonis


organism_name: Ligilactobacillus agilis


organism_name: Limosilactobacillus vaginalis


organism_name: Veillonella magna


organism_name: Galliscardovia ingluviei


organism_name: Trichococcus shcherbakoviae


asm_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

organism_name: Rhodococcus pyridinivorans


asm_submitter: The French Research Institute for Exploitation of the Sea

excluded_from_refseq: contaminated; unverified source organism

organism_name: Macrococcoides caseolyticum


organism_name: Catenibacterium mitsuokai


asm_submitter: chu de bordeaux

organism_name: Campylobacter fetus


organism_name: Campylobacter lari


organism_name: Campylobacter upsaliensis


organism_name: Campylobacter hyointestinalis


organism_name: Lichenicola sp.


organism_name: Hoeflea sp.


asm_submitter: AALBORG UNIVERSITY

organism_name: Microbacterium aurum


organism_name: Marinovum algicola


organism_name: Rothia mucilaginosa


organism_name: Pseudomonas veronii


asm_submitter: Indian Biological Data Centre

isolate: SAMIN0017120-Comprehensive Genomic Analysis of Mixta calida Isolated from the Faecal Sample of a Tuberculosis Patient in India

organism_name: Mixta calida


asm_submitter: Hopital Henri Mondor APHP

organism_name: Klebsiella pneumoniae


organism_name: Tabrizicola sp.


asm_submitter: Liverpool School of Tropical Medicine

organism_name: Enterobacter hormaechei


organism_name: Escherichia coli


asm_submitter: IINFACTS

isolate: Pseudomonas sp. P14-2025

organism_name: Pseudomonas sp. P14-2025


organism_name: Pseudomonas sp. P15-2025


asm_submitter: University of Queensland

organism_name: Akkermansia sp.


asm_submitter: UCLouvain

organism_name: Dysosmobacter welbionis


asm_submitter: University of Cologne - Institute for Plant Sciences

organism_name: Chryseobacterium indoltheticum


organism_name: Enterobacter soli


asm_submitter: huqiuan

organism_name: Kaarinaea lacus


organism_name: [Eubacterium] cellulosolvens


asm_submitter: STATENS SERUM INSTITUT


asm_submitter: IHU - Mediterranee Infection

isolate: Subgingival plaque of NOMA patient

organism_name: Robertmurraya sp. Marseille-Q9965


organism_name: Parvimonas micra


organism_name: Rothia mucilaginosa


asm_submitter: Universita Cattolica del Sacro Cuore

organism_name: Azospirillum doebereinerae


organism_name: Azospirillum palustre


organism_name: Azospirillum argentinense


organism_name: Azospirillum endophyticum


organism_name: Azospirillum largimobile


asm_name: Novosphingobium sp. R-89996 assembly

asm_submitter: LM-UGent

organism_name: Novosphingobium lindaniclasticum


asm_name: Ancylobacter sp. R-93092 assembly

organism_name: Ancylobacter novellus


asm_name: Ancylobacter sp. R-93111 assembly


asm_submitter: Allan Mtenje Zuza

organism_name: Klebsiella pneumoniae


asm_name: BKREGE

isolate: BKREGE


asm_submitter: university of lausanne

organism_name: Corynebacterium propinquum


organism_name: Holdemanella biformis


organism_name: Dialister sp.


organism_name: Enterobacter quasiroggenkampii


asm_submitter: Landesgesundheitsamt Baden Wuerttemberg

organism_name: Legionella nigrisilvae


organism_name: Legionella stuttgartensis


asm_submitter: University of Birmingham

organism_name: Biostraticola tofi


organism_name: Pseudomonas shirazensis


asm_submitter: EMG

organism_name: Ruminococcus bromii


organism_name: Ruminococcus callidus


organism_name: Listeria monocytogenes


asm_submitter: Helmholtz-Zentrum fur Umweltforschung

organism_name: Stenotrophomonas muris


asm_submitter: chu de bordeaux

organism_name: Campylobacter coli


organism_name: Phocaeicola coprocola


asm_submitter: UANTW

organism_name: Pediococcus acidilactici


asm_submitter: UK Health Security Agency

organism_name: Clostridioides difficile


organism_name: Paramuribaculum intestinale


organism_name: Rothia mucilaginosa


organism_name: Phocaeicola plebeius


asm_submitter: European Centre for Disease Prevention and Control

isolate: ECDC 0570

organism_name: Acinetobacter baumannii


isolate: ECDC 0566


isolate: ECDC 0565


isolate: ECDC 0572


isolate: ECDC 0574


isolate: ECDC 0573


isolate: ECDC 0567


organism_name: Enterobacter quasiroggenkampii


isolate: ECDC 0019


isolate: ECDC 0018


isolate: ECDC 0035


isolate: ECDC 0016


isolate: ECDC 0021


isolate: ECDC 0028


isolate: ECDC 0017


isolate: ECDC 0012


isolate: ECDC 0013


isolate: ECDC 0015


isolate: ECDC 0024


isolate: ECDC 0037


isolate: ECDC 0032


isolate: ECDC 0027


isolate: ECDC 0022


isolate: ECDC 0031


isolate: ECDC 0023


isolate: ECDC 0029


isolate: ECDC 0034


isolate: ECDC 0033


isolate: ECDC 0040


isolate: ECDC 0559


isolate: ECDC 0557


isolate: ECDC 0728


isolate: ECDC 0562


isolate: ECDC 0729


isolate: ECDC 0726


isolate: ECDC 0732


isolate: ECDC 0724


isolate: ECDC 0731


isolate: ECDC 0564


isolate: ECDC 0042


isolate: ECDC 0047


isolate: ECDC 0050


isolate: ECDC 0044


isolate: ECDC 0041


isolate: ECDC 0049


isolate: ECDC 0048


asm_submitter: Sun Yat-sen University Cancer Center

organism_name: Staphylococcus epidermidis


infraspecific_name: strain=NCTC 15158

organism_name: Escherichia coli


infraspecific_name: strain=NCTC 15149


asm_submitter: UK Health Security Agency Culture Collections