alternative_term
type: AnnotationProperty
label: has_exact_synonym

imported from
type: AnnotationProperty

assay
type: Class
subclass of: experimental process
alternative_term: measuring
alternative_term: scientific observation
IAO_0000111: assay
imported from: efo.owl

isolation of cell population
type: Class
label: single cell isolation
subclass of: sample enrichment
alternative_term: isolation of cell population
IAO_0000111: isolation of cell population
imported from: efo.owl

library preparation
type: Class
subclass of: experimental process
alternative_term: library construction
IAO_0000111: library preparation
alternative_term: nucleic acid library construction
alternative_term: nucleic acid library preparation
imported from: efo.owl

DNA assay
type: Class
subclass of: assay by molecule
imported from: efo.owl

RNA assay
type: Class
subclass of: assay by molecule
imported from: efo.owl

DNA-seq
type: Class
subclass of: DNA assay
subclass of: assay by high throughput sequencer
alternative_term: DNA sequencing
imported from: efo.owl

experimental process
type: Class
alternative_term: Experiment
imported from: efo.owl

assay by high throughput sequencer
type: Class
subclass of: assay by sequencer
alternative_term: high throughput sequencing assay
imported from: efo.owl

assay by molecule
type: Class
subclass of: assay
imported from: efo.owl

assay by instrument
type: Class
subclass of: assay
imported from: efo.owl

assay by sequencer
type: Class
subclass of: assay by instrument
alternative_term: sequencing assay
imported from: efo.owl

cDNA library construction
type: Class
subclass of: library preparation
alternative_term: cDNA
alternative_term: complementary DNA
alternative_term: cDNA library construction
imported from: efo.owl

ATAC-seq
type: Class
subclass of: DNA-seq
imported from: efo.owl

chromosome conformation capture assay
type: Class
subclass of: DNA assay
imported from: efo.owl

Hi-C
type: Class
subclass of: assay by sequencer
subclass of: ligation-free chromosome conformation capture assay
imported from: efo.owl

CEL-seq
type: Class
subclass of: RNA assay
subclass of: single cell library construction
imported from: efo.owl

DroNc-seq
type: Class
subclass of: RNA assay
subclass of: single cell library construction
imported from: efo.owl

Drop-seq
type: Class
subclass of: RNA assay
subclass of: single cell library construction
imported from: efo.owl

inDrop
type: Class
subclass of: RNA assay
subclass of: single cell library construction
imported from: efo.owl

MARS-seq
type: Class
subclass of: RNA assay
subclass of: single cell library construction
imported from: efo.owl

Quartz-seq
type: Class
subclass of: RNA assay
subclass of: single cell library construction
imported from: efo.owl

scATAC-seq (Microfluidics)
type: Class
subclass of: scATAC-seq
alternative_term: single cell ATAC-seq (Microfluidics)
imported from: efo.owl

scBS-seq
type: Class
subclass of: DNA assay
subclass of: single cell library construction
imported from: efo.owl

scChIP-seq
type: Class
subclass of: DNA assay
subclass of: single cell library construction
imported from: efo.owl

Seq-Well
type: Class
subclass of: RNA assay
subclass of: single cell library construction
imported from: efo.owl

scATAC-seq (cell index)
type: Class
subclass of: scATAC-seq
alternative_term: single cell ATAC-seq (cell index)
alternative_term: sci-ATAC-seq
imported from: efo.owl

Smart-seq
type: Class
subclass of: RNA assay
subclass of: Smart-like
imported from: efo.owl

Smart-seq2
type: Class
subclass of: RNA assay
subclass of: Smart-like
imported from: efo.owl

STRT-seq
type: Class
subclass of: RNA assay
subclass of: single cell library construction
imported from: efo.owl

spatial transcriptomics
type: Class
subclass of: RNA assay
imported from: efo.owl

10X sequencing
type: Class
subclass of: single cell library construction
alternative_term: 10X
alternative_term: 10x
imported from: efo.owl

enrichment process
type: Class
subclass of: experimental process
imported from: efo.owl

sample dissociation
type: Class
subclass of: experimental process
imported from: efo.owl

sample enrichment
type: Class
subclass of: enrichment process
imported from: efo.owl

fluorescence-activated cell sorting
type: Class
subclass of: isolation of cell population
alternative_term: FAC sorting
alternative_term: FACS
imported from: efo.owl

magnetic affinity cell sorting
type: Class
subclass of: sample enrichment
alternative_term: MAC sorting
alternative_term: MACS
imported from: efo.owl

Ficoll-Hypaque method
type: Class
subclass of: density gradient centrifugation
alternative_term: Ficoll WBC Isolation
alternative_term: Ficoll gradient
imported from: efo.owl

laser capture microdissection
type: Class
subclass of: isolation of cell population
alternative_term: LCM
alternative_term: LMD
alternative_term: laser-assisted microdissection
imported from: efo.owl

density gradient centrifugation
type: Class
subclass of: sample enrichment
alternative_term: cell separation by density gradient centrifugation
alternative_term: density gradient
imported from: efo.owl

enzymatic dissociation
type: Class
subclass of: sample dissociation
imported from: efo.owl

mechanical dissociation
type: Class
subclass of: sample dissociation
imported from: efo.owl

CITE-seq
type: Class
subclass of: RNA assay
subclass of: single cell library construction
alternative_term: cellular indexing of transcriptomes and epitopes by sequencing
imported from: efo.owl

10X v2 sequencing
type: Class
subclass of: 10X sequencing
alternative_term: 10x v2
alternative_term: 10x_v2
alternative_term: 10XV2
imported from: efo.owl

cell size selection
type: Class
subclass of: sample enrichment
imported from: efo.owl

10x v1 sequencing
type: Class
subclass of: 10X sequencing
alternative_term: 10X v1
alternative_term: 10XV1
imported from: efo.owl

10x v3 sequencing
type: Class
subclass of: 10X sequencing
alternative_term: 10X v3
alternative_term: 10XV3
imported from: efo.owl

10X 3' v2 sequencing
type: Class
subclass of: 10X v2 sequencing
alternative_term: 10X 3' v2
imported from: efo.owl

10X 5' v2 sequencing
type: Class
subclass of: 10X v2 sequencing
alternative_term: 10X 5' v2
imported from: efo.owl

10X 3' v1 sequencing
type: Class
subclass of: 10x v1 sequencing
alternative_term: 10X 3' v1
imported from: efo.owl

SPLiT-seq
type: Class
subclass of: RNA assay
subclass of: single cell library construction
alternative_term: split-pool ligation-based transcriptome sequencing
imported from: efo.owl

10x 5' v3 sequencing
type: Class
subclass of: 10x v3 sequencing
alternative_term: 10X 5' v3
imported from: efo.owl

10x 3' v3 sequencing
type: Class
subclass of: 10x v3 sequencing
alternative_term: 10X 3' v3
imported from: efo.owl

ligation-free chromosome conformation capture assay
type: Class
subclass of: chromosome conformation capture assay
imported from: efo.owl

single cell Hi-C
type: Class
subclass of: assay by high throughput sequencer
subclass of: Hi-C
subclass of: single cell library construction
imported from: efo.owl

SCRB-seq
type: Class
subclass of: RNA assay
subclass of: single cell library construction
alternative_term: Single cell RNA barcoding and sequencing
imported from: efo.owl

CEL-seq2
type: Class
subclass of: assay
subclass of: single cell library construction
imported from: efo.owl

assay by Fluidigm C1 microfluidics platform
type: Class
subclass of: assay by instrument
imported from: efo.owl

Fluidigm C1-based dissociation
type: Class
subclass of: isolation of cell population
subclass of: assay by Fluidigm C1 microfluidics platform
imported from: efo.owl

Fluidigm C1-based library preparation
type: Class
subclass of: assay by Fluidigm C1 microfluidics platform
subclass of: single cell library construction
imported from: efo.owl

DNA library construction
type: Class
subclass of: library preparation
imported from: efo.owl

EasySep cell separation
type: Class
subclass of: assay
subclass of: magnetic affinity cell sorting
alternative_term: EasySep live/dead separation
imported from: efo.owl

droplet-based cell isolation
type: Class
subclass of: isolation of cell population
imported from: efo.owl

cell picking
type: Class
subclass of: isolation of cell population
imported from: efo.owl

mouth pipette
type: Class
subclass of: isolation of cell population
imported from: efo.owl

single cell library construction
type: Class
subclass of: library preparation
alternative_term: single cell library preparation
alternative_term: single-cell library preparation
alternative_term: single-cell library construction
imported from: efo.owl

Smart-like
type: Class
subclass of: single cell library construction
imported from: efo.owl

sci-RNA-seq
type: Class
subclass of: single cell library construction
imported from: efo.owl

10X Immune profiling
type: Class
subclass of: 10X 5' v2 sequencing
alternative_term: 10X VDJ
alternative_term: Chromium Single Cell V(D)J
alternative_term: 10X V(D)J
imported from: efo.owl

10X TCR enrichment
type: Class
subclass of: 10X Immune profiling
imported from: efo.owl

10X Ig enrichment
type: Class
subclass of: 10X Immune profiling
alternative_term: 10X BCR enrichment
imported from: efo.owl

scATAC-seq
type: Class
subclass of: ATAC-seq
subclass of: single cell library construction
alternative_term: single cell ATAC-seq
alternative_term: ATAC-seq (single cell)
alternative_term: single cell assay for transposase-accessible chromatin using sequencing
alternative_term: single-cell ATAC-seq
alternative_term: single cell ATAC-sequencing
imported from: efo.owl

Visium Spatial Gene Expression
type: Class
subclass of: spatial transcriptomics
subclass of: 10X sequencing
alternative_term: 10X Visium
alternative_term: Visium
imported from: efo.owl

barcoded plate-based single cell RNA-seq
type: Class
subclass of: single cell library construction
alternative_term: barcoded plate-based single-cell RNA-seq
imported from: efo.owl