A classification of samples taken from organisms based on the type of material collected and grouped into primary, cell line and derived type.
Should this be simply Milk with hasAnatomicalSite of Mammary Glands? See https://biology.stackexchange.com/questions/39291/are-there-any-non-mammalian-species-known-that-lactate and http://purl.obolibrary.org/obo/UBERON_0001913
Will likely create instances for specific cell lines, but no concrete use case available yet. Also this should map to "cell line" in the Cell Line Ontology.
This term attempts to characterize entities in terms of its channel of biological investigation. For example, activities that produce such results include assays, analysis pipelines, lab tests, and imaging -- x-ray, CT-scan, or microscopy as well as the data these activities generate.
Data modality describes the biological nature of the information gathered as the result of an Activity, independent of the technology or methods used to produce the information.
Is this an Imaging technology or should we have a category for lab tests and consider this a Lab Test or is it a type of assay?
A property that indicates this entity is related to the biological investigation of the epigenome.
A property that indicates this entity is related to the biological investigation of the genome.
Definition from Genotyping (operation_3196) in edamontology.org. Need to add this as an equivalent class. Note that this is often performed by calling SNPs from assays. It it intended to differentiate from larger scale genomic sequencing -- exome, genome.
Analyse DNA sequence data to identify differences between the genetic composition (genotype) of an individual compared to other individual's or a reference sequence.
A property that indicates this entity is related to the biological investigation of the metabolome.
A property that indicates this entity is related to the biological investigation of the microbiome.
A classification of molecular sample types.
A property that indicates this entity is related to the biological investigation of the proteome.
A classification of samples based on the type of material collected and grouped by subclass.
A property that indicates this entity is related to the biological investigation of the transcriptome.