ecocore.owl
type: Ontology
version IRI: ecocore.owl
license: https://creativecommons.org/licenses/by/3.0/
comment: An ontology of core ecological entities
version info: 2022-03-09

editor preferred label
type: AnnotationProperty
editor preferred label: editor preferred label
editor preferred label: editor preferred term
editor preferred label: editor preferred term~editor preferred label
has curation status: IAO_0000122
definition: The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: editor preferred term
label: editor preferred term~editor preferred label

example of usage
type: AnnotationProperty
editor preferred label: example
editor preferred label: example of usage
has curation status: IAO_0000122
definition: A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
database_cross_reference: IAO:0000112
has OBO namespace: uberon
id: example_of_usage
is metadata tag: true
shorthand: example_of_usage

has curation status
type: AnnotationProperty
editor preferred label: has curation status
term editor: PERSON:Alan Ruttenberg
term editor: PERSON:Bill Bug
term editor: PERSON:Melanie Courtot
definition source: OBI_0000281

definition
type: AnnotationProperty
editor preferred label: definition
editor preferred label: textual definition
has curation status: IAO_0000122
definition: The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
definition: The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
editor note: 2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: textual definition

editor note
type: AnnotationProperty
editor preferred label: editor note
has curation status: IAO_0000122
definition: An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obfoundry.org/obo/obi>
definition source: GROUP:OBI:<http://purl.obofoundry.org/obo/obi>
database_cross_reference: IAO:0000116
has OBO namespace: uberon
id: editor_note
is metadata tag: true
shorthand: editor_note

term editor
type: AnnotationProperty
editor preferred label: term editor
has curation status: IAO_0000122
definition: Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people
editor note: 20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115.
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

alternative term
type: AnnotationProperty
editor preferred label: alternative term
has curation status: IAO_0000125
definition: An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

definition source
type: AnnotationProperty
editor preferred label: definition source
has curation status: IAO_0000122
definition: Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
definition: formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
term editor: PERSON:Daniel Schober
definition source: Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

has axiom label
type: AnnotationProperty
editor preferred label: has axiom id
term editor: Person:Alan Ruttenberg
definition source: Person:Alan Ruttenberg
IAO_0000600: A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI

temporal interpretation
type: AnnotationProperty
definition: An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.

is a defining property chain axiom
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL

is a defining property chain axiom where second argument is reflexive
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.

creator
type: AnnotationProperty
has OBO namespace: uberon
id: dc-creator
is metadata tag: true
shorthand: dc-creator

license
type: AnnotationProperty
has OBO namespace: uberon
id: dcterms-license
is metadata tag: true
shorthand: dcterms-license

database_cross_reference
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_narrow_synonym
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

in_subset
type: AnnotationProperty

label
type: AnnotationProperty
editor preferred label: label

part of
type: ObjectProperty
sub property of: overlaps
inverse of: has part
type: TransitiveProperty
editor preferred label: is part of
example of usage: my brain is part of my body (continuant parthood, two material entities)
example of usage: my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
example of usage: this day is part of this year (occurrent parthood)
definition: a core relation that holds between a part and its whole
editor note: Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
editor note: Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
alternative term: part_of
temporal interpretation: RO_0001901
RO_0040042: continuant
RO_0040042: occurrent
RO_0040042: independent continuant
RO_0040042: realizable entity
RO_0040042: quality
RO_0040042: specifically dependent continuant
RO_0040042: generically dependent continuant
database_cross_reference: BFO:0000050
has OBO namespace: external
has OBO namespace: plant_ontology
has OBO namespace: protein
has OBO namespace: quality
has OBO namespace: uberon
id: part_of
in_subset: valid for go annotation extension
in_subset: valid for go gp2term
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: part_of
label: part_of

has part
type: ObjectProperty
sub property of: overlaps
type: TransitiveProperty
editor preferred label: has part
example of usage: my body has part my brain (continuant parthood, two material entities)
example of usage: my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
example of usage: this year has part this day (occurrent parthood)
definition: Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2.
definition: a core relation that holds between a whole and its part
editor note: Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
editor note: Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
alternative term: has_part
temporal interpretation: RO_0001901
database_cross_reference: BFO:0000051
has OBO namespace: chebi_ontology
has OBO namespace: external
has OBO namespace: plant_ontology
has OBO namespace: protein
has OBO namespace: quality
has OBO namespace: uberon
id: has_part
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
is cyclic: false
shorthand: has_part
comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'.
label: has_part

Axiom
annotated source: has part
annotated property: definition
annotated target: Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2.
database_cross_reference: PATOC:CJM

realized in
type: ObjectProperty
inverse of: realizes
domain: realizable entity
range: process
editor preferred label: realized in
example of usage: this disease is realized in this disease course
example of usage: this fragility is realized in this shattering
example of usage: this investigator role is realized in this investigation
alternative term: is realized by
alternative term: realized_in
IAO_0000600: [copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
comment: Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

realizes
type: ObjectProperty
domain: process
range: realizable entity
editor preferred label: realizes
example of usage: this disease course realizes this disease
example of usage: this investigation realizes this investigator role
example of usage: this shattering realizes this fragility
IAO_0000600: to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
comment: Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

preceded by
type: ObjectProperty
sub property of: ends after
inverse of: precedes
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: part of
editor preferred label: preceded by
definition: The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P.
definition: X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)
definition: X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X).
definition: x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
editor note: An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
alternative term: is preceded by
alternative term: preceded_by
source: http://www.obofoundry.org/ro/#OBO_REL:preceded_by
created by: Laurel_Cooper
creation date: 2013-07-09T14:29:15Z
database_cross_reference: BFO:0000062
has_exact_synonym: is preceded by
has_exact_synonym: takes place after
has OBO namespace: external
has OBO namespace: plant_ontology
has OBO namespace: uberon
id: preceded_by
in_subset: ro-eco
shorthand: preceded_by
comment: Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
label: preceded_by

Axiom
annotated source: preceded by
annotated property: definition
annotated target: The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P.
database_cross_reference: POC:Laurel_Cooper

Axiom
annotated source: preceded by
annotated property: has_exact_synonym
annotated target: is preceded by
database_cross_reference: SIO:000249

Axiom
annotated source: preceded by
annotated property: has_exact_synonym
annotated target: takes place after
database_cross_reference: Allen:precedes

precedes
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: part of
editor preferred label: precedes
definition: x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
created by: Laurel_Cooper
creation date: 2015-06-04T17:18:40Z
database_cross_reference: BFO:0000063
has OBO namespace: external
has OBO namespace: plant_ontology
has OBO namespace: uberon
id: precedes
in_subset: ro-eco
shorthand: precedes

occurs in
type: ObjectProperty
inverse of: contains process
domain: occurrent
range: independent continuant
property chain axiom: part of
editor preferred label: occurs in
definition: b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
alternative term: occurs_in
alternative term: unfolds in
alternative term: unfolds_in
database_cross_reference: BFO:0000066
has OBO namespace: external
id: occurs_in
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: occurs_in
comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant

contains process
type: ObjectProperty
editor preferred label: site of
definition: [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
database_cross_reference: BFO:0000067
has OBO namespace: uberon
id: contains_process
shorthand: contains_process
comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant

anterior to
type: ObjectProperty
inverse of: posterior to
type: TransitiveProperty
definition: x anterior to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail.
definition: x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer
definition: x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer.
contributor: https://orcid.org/0000-0002-6601-2165
created by: cjm
creation date: 2009-07-31T02:15:46Z
database_cross_reference: BSPO:0000096
has OBO namespace: uberon
id: anterior_to
shorthand: anterior_to
label: anterior_to

Axiom
annotated source: anterior to
annotated property: definition
annotated target: x anterior to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail.
database_cross_reference: BSPO:cjm

Axiom
annotated source: anterior to
annotated property: definition
annotated target: x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer
database_cross_reference: http://orcid.org/0000-0002-6601-2165

Axiom
annotated source: anterior to
annotated property: definition
annotated target: x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer.
database_cross_reference: http://orcid.org/0000-0002-6601-2165

Axiom
annotated source: anterior to
annotated property: definition
annotated target: x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer.
database_cross_reference: http://orcid.org/0000-0002-6601-2165

distal to
type: ObjectProperty
inverse of: proximal to
type: TransitiveProperty
definition: x distal to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal).
definition: x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal).
database_cross_reference: BSPO:0000097
has OBO namespace: uberon
id: distal_to
shorthand: distal_to
label: distal_to

Axiom
annotated source: distal to
annotated property: definition
annotated target: x distal to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal).
database_cross_reference: BSPO:cjm

Axiom
annotated source: distal to
annotated property: definition
annotated target: x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal).
database_cross_reference: http://orcid.org/0000-0002-6601-2165

Axiom
annotated source: distal to
annotated property: definition
annotated target: x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal).
database_cross_reference: http://orcid.org/0000-0002-6601-2165

dorsal to
type: ObjectProperty
inverse of: ventral to
type: TransitiveProperty
definition: x dorsal to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly).
definition: x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).
database_cross_reference: BSPO:0000098
has OBO namespace: uberon
id: dorsal_to
shorthand: dorsal_to
label: dorsal_to

Axiom
annotated source: dorsal to
annotated property: definition
annotated target: x dorsal to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly).
database_cross_reference: BSPO:cjm

Axiom
annotated source: dorsal to
annotated property: definition
annotated target: x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).
database_cross_reference: http://orcid.org/0000-0002-6601-2165

Axiom
annotated source: dorsal to
annotated property: definition
annotated target: x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).
database_cross_reference: http://orcid.org/0000-0002-6601-2165

posterior to
type: ObjectProperty
type: TransitiveProperty
definition: x posterior to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail.
definition: x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail.
database_cross_reference: BSPO:0000099
has_narrow_synonym: caudal_to
has OBO namespace: uberon
id: posterior_to
shorthand: posterior_to
label: posterior_to

Axiom
annotated source: posterior to
annotated property: definition
annotated target: x posterior to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail.
database_cross_reference: BSPO:cjm

Axiom
annotated source: posterior to
annotated property: definition
annotated target: x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail.
database_cross_reference: http://orcid.org/0000-0002-6601-2165

Axiom
annotated source: posterior to
annotated property: definition
annotated target: x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail.
database_cross_reference: http://orcid.org/0000-0002-6601-2165

proximal to
type: ObjectProperty
type: TransitiveProperty
definition: x proximal to y iff x is closer to the point of attachment with the body than y.
definition: x proximal_to y iff x is closer to the point of attachment with the body than y.
database_cross_reference: BSPO:0000100
has OBO namespace: uberon
id: proximal_to
shorthand: proximal_to
label: proximal_to

Axiom
annotated source: proximal to
annotated property: definition
annotated target: x proximal to y iff x is closer to the point of attachment with the body than y.
database_cross_reference: BSPO:cjm

Axiom
annotated source: proximal to
annotated property: definition
annotated target: x proximal_to y iff x is closer to the point of attachment with the body than y.
database_cross_reference: http://orcid.org/0000-0002-6601-2165

Axiom
annotated source: proximal to
annotated property: definition
annotated target: x proximal_to y iff x is closer to the point of attachment with the body than y.
database_cross_reference: http://orcid.org/0000-0002-6601-2165

ventral to
type: ObjectProperty
type: TransitiveProperty
definition: x ventral to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly).
definition: x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).
database_cross_reference: BSPO:0000102
has OBO namespace: uberon
id: ventral_to
shorthand: ventral_to
label: ventral_to

Axiom
annotated source: ventral to
annotated property: definition
annotated target: x ventral to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly).
database_cross_reference: BSPO:cjm

Axiom
annotated source: ventral to
annotated property: definition
annotated target: x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).
database_cross_reference: http://orcid.org/0000-0002-6601-2165

Axiom
annotated source: ventral to
annotated property: definition
annotated target: x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).
database_cross_reference: http://orcid.org/0000-0002-6601-2165

deep to
type: ObjectProperty
inverse of: superficial to
type: TransitiveProperty
definition: Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.
database_cross_reference: BSPO:0000107
has OBO namespace: uberon
id: deep_to
shorthand: deep_to
label: deep_to

Axiom
annotated source: deep to
annotated property: definition
annotated target: Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.
database_cross_reference: http://orcid.org/0000-0002-6601-2165

Axiom
annotated source: deep to
annotated property: definition
annotated target: Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.
database_cross_reference: BSPO:cjm

superficial to
type: ObjectProperty
type: TransitiveProperty
definition: Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.
database_cross_reference: BSPO:0000108
has OBO namespace: uberon
id: superficial_to
shorthand: superficial_to
label: superficial_to

Axiom
annotated source: superficial to
annotated property: definition
annotated target: Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.
database_cross_reference: http://orcid.org/0000-0002-6601-2165

Axiom
annotated source: superficial to
annotated property: definition
annotated target: Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.
database_cross_reference: BSPO:cjm

in left side of
type: ObjectProperty
sub property of: in lateral side of
property disjoint with: in right side of
definition: X in left side of Y <=> if Y is subdivided into two left and right portions, X is part of the left portion.
definition: X in_left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion.
database_cross_reference: BSPO:0000120
has OBO namespace: uberon
id: in_left_side_of
shorthand: in_left_side_of
label: in_left_side_of

Axiom
annotated source: in left side of
annotated property: definition
annotated target: X in left side of Y <=> if Y is subdivided into two left and right portions, X is part of the left portion.
database_cross_reference: BSPO:PATO_mtg_2009

Axiom
annotated source: in left side of
annotated property: definition
annotated target: X in_left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion.
database_cross_reference: BSPO:PATO_mtg_2009

in right side of
type: ObjectProperty
sub property of: in lateral side of
definition: X in right side of Y <=> if Y is subdivided into two left and right portions, X is part of the right portion.
definition: X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion.
database_cross_reference: BSPO:0000121
has OBO namespace: uberon
id: in_right_side_of
shorthand: in_right_side_of
label: in_right_side_of

Axiom
annotated source: in right side of
annotated property: definition
annotated target: X in right side of Y <=> if Y is subdivided into two left and right portions, X is part of the right portion.
database_cross_reference: BSPO:PATO_mtg_2009

Axiom
annotated source: in right side of
annotated property: definition
annotated target: X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion.
database_cross_reference: BSPO:PATO_mtg_2009

in posterior side of
type: ObjectProperty
sub property of: part of
definition: X posterior side of Y <=> if Y is subdivided into two anterior and posterior portions, X is part of the posterior portion.
definition: X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion.
database_cross_reference: BSPO:0000122
has OBO namespace: uberon
id: in_posterior_side_of
shorthand: in_posterior_side_of
label: in_posterior_side_of

Axiom
annotated source: in posterior side of
annotated property: definition
annotated target: X posterior side of Y <=> if Y is subdivided into two anterior and posterior portions, X is part of the posterior portion.
database_cross_reference: BSPO:PATO_mtg_2009

Axiom
annotated source: in posterior side of
annotated property: definition
annotated target: X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion.
database_cross_reference: BSPO:PATO_mtg_2009

in anterior side of
type: ObjectProperty
sub property of: part of
definition: X anterior side of Y <=> if Y is subdivided into two anterior and posterior portions, X is part of the anterior portion.
definition: X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion.
database_cross_reference: BSPO:0000123
has OBO namespace: uberon
id: in_anterior_side_of
shorthand: in_anterior_side_of
label: in_anterior_side_of

Axiom
annotated source: in anterior side of
annotated property: definition
annotated target: X anterior side of Y <=> if Y is subdivided into two anterior and posterior portions, X is part of the anterior portion.
database_cross_reference: BSPO:PATO_mtg_2009

Axiom
annotated source: in anterior side of
annotated property: definition
annotated target: X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion.
database_cross_reference: BSPO:PATO_mtg_2009

in proximal side of
type: ObjectProperty
sub property of: part of
inverse of: in distal side of
definition: X proximal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the proximal portion.
definition: x in proximal side of y <=> if y is subdivided into two proximal and distal portions, y is part of the proximal portion.
database_cross_reference: BSPO:0000124
has OBO namespace: uberon
id: in_proximal_side_of
shorthand: in_proximal_side_of
label: in_proximal_side_of

Axiom
annotated source: in proximal side of
annotated property: definition
annotated target: X proximal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the proximal portion.
database_cross_reference: BSPO:PATO_mtg_2009

Axiom
annotated source: in proximal side of
annotated property: definition
annotated target: x in proximal side of y <=> if y is subdivided into two proximal and distal portions, y is part of the proximal portion.
database_cross_reference: BSPO:PATO_mtg_2009

in distal side of
type: ObjectProperty
sub property of: part of
definition: X distal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the distal portion.
definition: x in distal side of y <=> if y is subdivided into two proximal and distal portions, y is part of the distal portion.
database_cross_reference: BSPO:0000125
has OBO namespace: uberon
id: in_distal_side_of
shorthand: in_distal_side_of
label: in_distal_side_of

Axiom
annotated source: in distal side of
annotated property: definition
annotated target: X distal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the distal portion.
database_cross_reference: BSPO:PATO_mtg_2009

Axiom
annotated source: in distal side of
annotated property: definition
annotated target: x in distal side of y <=> if y is subdivided into two proximal and distal portions, y is part of the distal portion.
database_cross_reference: BSPO:PATO_mtg_2009

in lateral side of
type: ObjectProperty
sub property of: part of
definition: X in lateral side of Y <=> if X is in left side of Y or X is in right side of Y. X is often, but not always a paired structure
definition: X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure
definition: X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure.
database_cross_reference: BSPO:0000126
has OBO namespace: uberon
id: in_lateral_side_of
shorthand: in_lateral_side_of
label: in_lateral_side_of

Axiom
annotated source: in lateral side of
annotated property: definition
annotated target: X in lateral side of Y <=> if X is in left side of Y or X is in right side of Y. X is often, but not always a paired structure
database_cross_reference: UBERON:cjm

Axiom
annotated source: in lateral side of
annotated property: definition
annotated target: X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: in lateral side of
annotated property: definition
annotated target: X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: in lateral side of
annotated property: definition
annotated target: X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

proximalmost part of
type: ObjectProperty
sub property of: in proximal side of
definition: X proximalmost part of Y <=> X is in proximal side of Y and X is adjacent to the proximal boundary of Y
definition: X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y
definition: X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y.
database_cross_reference: BSPO:0001106
has OBO namespace: uberon
id: proximalmost_part_of
shorthand: proximalmost_part_of
label: proximalmost_part_of

Axiom
annotated source: proximalmost part of
annotated property: definition
annotated target: X proximalmost part of Y <=> X is in proximal side of Y and X is adjacent to the proximal boundary of Y
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: proximalmost part of
annotated property: definition
annotated target: X proximalmost part of Y <=> X is in proximal side of Y and X is adjacent to the proximal boundary of Y
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: proximalmost part of
annotated property: definition
annotated target: X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: proximalmost part of
annotated property: definition
annotated target: X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: proximalmost part of
annotated property: definition
annotated target: X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

immediately deep to
type: ObjectProperty
sub property of: deep to
sub property of: adjacent to
inverse of: immediately superficial to
definition: This relation holds when both the deep_to and ajdacent_to relationship similarly hold.
definition: x immediately deep to y iff x deep_to y and x is contiguous with y.
database_cross_reference: BSPO:0001107
has OBO namespace: uberon
id: immediately_deep_to
shorthand: immediately_deep_to
label: immediately_deep_to

Axiom
annotated source: immediately deep to
annotated property: definition
annotated target: This relation holds when both the deep_to and ajdacent_to relationship similarly hold.
database_cross_reference: http://orcid.org/0000-0002-6601-2165

Axiom
annotated source: immediately deep to
annotated property: definition
annotated target: This relation holds when both the deep_to and ajdacent_to relationship similarly hold.
database_cross_reference: http://orcid.org/0000-0002-6601-2165

Axiom
annotated source: immediately deep to
annotated property: definition
annotated target: x immediately deep to y iff x deep_to y and x is contiguous with y.
database_cross_reference: BSPO:curators

immediately superficial to
type: ObjectProperty
sub property of: superficial to
sub property of: adjacent to
definition: x immediately superficial to y iff x superficial to y and x is contiguous with y.
database_cross_reference: BSPO:0015014
has OBO namespace: uberon
id: immediately_superficial_to
shorthand: immediately_superficial_to
label: immediately_superficial_to

Axiom
annotated source: immediately superficial to
annotated property: definition
annotated target: x immediately superficial to y iff x superficial to y and x is contiguous with y.
database_cross_reference: BSPO:curators

results_in_distribution_of
type: ObjectProperty
database_cross_reference: GOREL:0002003
has OBO namespace: external
id: results_in_distribution_of
shorthand: results_in_distribution_of

results_in_fission_of
type: ObjectProperty
sub property of: has participant
database_cross_reference: GOREL:0002004
has OBO namespace: external
id: results_in_fission_of
shorthand: results_in_fission_of

is about
type: ObjectProperty
domain: IAO_0000030
example of usage: This document is about information artifacts and their representations
has curation status: IAO_0000125
definition: A (currently) primitive relation that relates an information artifact to an entity.
editor note: 7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive. We will try to build it back up by elaborating the various subproperties that are more precisely defined. Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.
term editor: person:Alan Ruttenberg
definition source: Smith, Ceusters, Ruttenberg, 2000 years of philosophy

characteristic of
type: ObjectProperty
sub property of: characteristic of part of
inverse of: bearer of
type: FunctionalProperty
editor preferred label: inheres in
example of usage: this fragility inheres in this vase
example of usage: this fragility is a characteristic of this vase
example of usage: this red color inheres in this apple
example of usage: this red color is a characteristic of this apple
definition: a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
definition: a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence
editor note: A dependent inheres in its bearer at all times for which the dependent exists.
alternative term: inheres_in
temporal interpretation: RO_0001901
comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.
label: inheres in

bearer of
type: ObjectProperty
type: InverseFunctionalProperty
range: specifically dependent continuant
editor preferred label: bearer of
example of usage: this apple is bearer of this red color
example of usage: this vase is bearer of this fragility
definition: Inverse of characteristic_of
definition: a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence
editor note: A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
alternative term: bearer_of
alternative term: is bearer of
temporal interpretation: RO_0001901
database_cross_reference: RO:0000053
has OBO namespace: external
has OBO namespace: uberon
id: bearer_of
shorthand: bearer_of
label: has characteristic

participates in
type: ObjectProperty
inverse of: has participant
domain: continuant
range: occurrent
editor preferred label: participates in
example of usage: this blood clot participates in this blood coagulation
example of usage: this input material (or this output material) participates in this process
example of usage: this investigator participates in this investigation
definition: a relation between a continuant and a process, in which the continuant is somehow involved in the process
alternative term: participates_in
database_cross_reference: RO:0000056
has OBO namespace: external
has OBO namespace: plant_ontology
has OBO namespace: uberon
id: participates_in
shorthand: participates_in
label: participates_in

has participant
type: ObjectProperty
domain: occurrent
range: continuant
property chain axiom: has part
property chain axiom: realizes
property chain axiom: characteristic of
editor preferred label: has participant
example of usage: this blood coagulation has participant this blood clot
example of usage: this investigation has participant this investigator
example of usage: this process has participant this input material (or this output material)
definition: a relation between a process and a continuant, in which the continuant is somehow involved in the process
editor note: Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
alternative term: has_participant
source: http://www.obofoundry.org/ro/#OBO_REL:has_participant
database_cross_reference: RO:0000057
has OBO namespace: external
has OBO namespace: plant_ontology
id: has_participant
shorthand: has_participant
label: has_participant

function of
type: ObjectProperty
sub property of: characteristic of
inverse of: has function
domain: function
example of usage: this catalysis function is a function of this enzyme
definition: a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence
editor note: A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists.
alternative term: function_of
alternative term: is function of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

quality of
type: ObjectProperty
sub property of: characteristic of
inverse of: has quality
example of usage: this red color is a quality of this apple
definition: a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence
editor note: A quality inheres in its bearer at all times for which the quality exists.
alternative term: is quality of
alternative term: quality_of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

role of
type: ObjectProperty
sub property of: characteristic of
inverse of: has role
example of usage: this investigator role is a role of this person
definition: a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
editor note: A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.
alternative term: is role of
alternative term: role_of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

has function
type: ObjectProperty
sub property of: bearer of
domain: independent continuant
range: function
example of usage: this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)
definition: a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence
editor note: A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists.
alternative term: has_function

has quality
type: ObjectProperty
sub property of: bearer of
range: quality
example of usage: this apple has quality this red color
definition: a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence
editor note: A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist.
alternative term: has_quality
database_cross_reference: RO:0000086
has OBO namespace: protein
has OBO namespace: uberon
id: has_quality
is transitive: false
shorthand: has_quality

has role
type: ObjectProperty
sub property of: bearer of
domain: independent continuant
range: role
example of usage: this person has role this investigator role (more colloquially: this person has this role of investigator)
definition: a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
editor note: A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
alternative term: has_role
database_cross_reference: RO:0000087
has OBO namespace: chebi_ontology
id: has_role
is cyclic: false
is transitive: false
shorthand: has_role

has disposition
type: ObjectProperty
sub property of: bearer of
inverse of: disposition of
domain: independent continuant
range: disposition
definition: a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence

disposition of
type: ObjectProperty
sub property of: characteristic of
definition: inverse of has disposition
in_subset: RO_0002259
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

location_of
type: ObjectProperty
inverse of: located_in
type: TransitiveProperty
editor preferred label: is location of
example of usage: my head is the location of my brain
example of usage: this cage is the location of this rat
definition: a relation between two independent continuants, the location and the target, in which the target is entirely within the location
editor note: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
alternative term: location_of
temporal interpretation: RO_0001901
database_cross_reference: RO:0001015
has OBO namespace: uberon
id: location_of
shorthand: location_of
label: location of

contained in
type: ObjectProperty
inverse of: contains
domain: material entity
range: independent continuant
property chain axiom: located_in
property chain axiom: part of
editor preferred label: contained in
editor note: Containment is location not involving parthood, and arises only where some immaterial continuant is involved.
editor note: Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):
editor note: Intended meaning: domain: material entity range: spatial region or site (immaterial continuant)
alternative term: contained_in
temporal interpretation: RO_0001901
in_subset: ro-eco

contains
type: ObjectProperty
editor preferred label: contains
temporal interpretation: RO_0001901
database_cross_reference: RO:0001019
has OBO namespace: uberon
id: contains
in_subset: ro-eco
shorthand: contains

located_in
type: ObjectProperty
type: TransitiveProperty
domain: independent continuant
domain: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
range: independent continuant
range: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
property chain axiom: part of
editor preferred label: located in
example of usage: my brain is located in my head
example of usage: this rat is located in this cage
definition: a relation between two independent continuants, the target and the location, in which the target is entirely within the location
editor note: Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus
editor note: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
alternative term: located_in
temporal interpretation: RO_0001901
source: http://www.obofoundry.org/ro/#OBO_REL:located_in
database_cross_reference: RO:0001025
has OBO namespace: uberon
id: located_in
in_subset: valid for go gp2term
shorthand: located_in
label: located in

Axiom
annotated source: located_in
annotated property: domain
annotated target: independent continuant
editor note: This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.

Axiom
annotated source: located_in
annotated property: range
annotated target: independent continuant
editor note: This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.

boundary of
type: ObjectProperty
sub property of: mereotopologically related to
inverse of: has boundary
example of usage: the surface of my skin is a 2D boundary of my body
definition: a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity
editor note: A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.
editor note: Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.
alternative term: 2D_boundary_of
alternative term: boundary of
alternative term: is 2D boundary of
alternative term: is boundary of
temporal interpretation: RO_0001901
database_cross_reference: RO:0002000
has OBO namespace: uberon
id: boundary_of
shorthand: boundary_of
label: 2D boundary of

has boundary
type: ObjectProperty
sub property of: mereotopologically related to
domain: material entity
range: immaterial entity
example of usage: my body has 2D boundary the surface of my skin
definition: a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity
editor note: A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.
editor note: Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.
term editor: David Osumi-Sutherland
alternative term: has boundary
alternative term: has_2D_boundary
temporal interpretation: RO_0001901
database_cross_reference: RO:0002002
has OBO namespace: uberon
id: has_boundary
shorthand: has_boundary
label: has 2D boundary

innervated_by
type: ObjectProperty
inverse of: innervates
property chain axiom: branching_part_of
term editor: David Osumi-Sutherland
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613
database_cross_reference: RO:0002005
has_exact_synonym: nerve supply
has OBO namespace: uberon
id: innervated_by
shorthand: innervated_by
comment: http://code.google.com/p/obo-relations/issues/detail

Axiom
annotated source: innervated_by
annotated property: has_exact_synonym
annotated target: nerve supply
database_cross_reference: FMA:85999

bounding layer of
type: ObjectProperty
sub property of: part of
domain: Class
  intersection of: material entity
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002124
range: material entity
definition: X outer_layer_of Y iff: . X :continuant that bearer_of some PATO:laminar . X part_of Y . exists Z :surface . X has_boundary Z . Z boundary_of Y has_boundary: http://purl.obolibrary.org/obo/RO_0002002 boundary_of: http://purl.obolibrary.org/obo/RO_0002000
term editor: David Osumi-Sutherland
database_cross_reference: RO:0002007
has OBO namespace: external
has OBO namespace: uberon
id: bounding_layer_of
in_subset: ro-eco
shorthand: bounding_layer_of
comment: A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane.

regulates transport of
type: ObjectProperty
property chain axiom: regulates
property chain axiom: transports or maintains localization of
definition: A relationship that holds between a process that regulates a transport process and the entity transported by that process.
term editor: David Osumi-Sutherland
in_subset: ro-eco

has regulatory component activity
type: ObjectProperty
sub property of: has component activity
sub property of: regulated by
definition: A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.
created by: dos
creation date: 2017-05-24T09:30:46Z
database_cross_reference: RO:0002013
has OBO namespace: external
id: has_regulatory_component_activity
shorthand: has_regulatory_component_activity

has negative regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: negatively regulated by
definition: A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.
created by: dos
creation date: 2017-05-24T09:31:01Z
database_cross_reference: RO:0002014
has OBO namespace: external
id: has_negative_regulatory_component_activity
shorthand: has_negative_regulatory_component_activity
comment: By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.

has positive regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: positively regulated by
definition: A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.
created by: dos
creation date: 2017-05-24T09:31:17Z
comment: By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.

has component activity
type: ObjectProperty
sub property of: has component process
created by: dos
creation date: 2017-05-24T09:44:33Z
comment: A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.

has component process
type: ObjectProperty
sub property of: has component
domain: process
range: process
definition: w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
created by: dos
creation date: 2017-05-24T09:49:21Z

directly regulated by
type: ObjectProperty
sub property of: regulated by
inverse of: directly regulates
created by: dos
creation date: 2017-09-17T13:52:24Z
comment: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.

Axiom
annotated source: directly regulated by
annotated property: comment
annotated target: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
database_cross_reference: GOC:dos

directly negatively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly negatively regulates
definition: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
created by: dos
creation date: 2017-09-17T13:52:38Z

Axiom
annotated source: directly negatively regulated by
annotated property: definition
annotated target: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
database_cross_reference: GOC:dos

directly positively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly positively regulates
definition: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
created by: dos
creation date: 2017-09-17T13:52:47Z

Axiom
annotated source: directly positively regulated by
annotated property: definition
annotated target: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
database_cross_reference: GOC:dos

has effector activity
type: ObjectProperty
sub property of: has component activity
sub property of: regulates
type: FunctionalProperty
definition: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
created by: dos
creation date: 2017-09-22T14:14:36Z
comment: This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.

Axiom
annotated source: has effector activity
annotated property: definition
annotated target: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
database_cross_reference: GOC:dos

before or simultaneous with
type: ObjectProperty
sub property of: temporally related to
term editor: David Osumi-Sutherland
alternative term: <=
in_subset: ro-eco
comment: Primitive instance level timing relation between events

simultaneous_with
type: ObjectProperty
sub property of: before or simultaneous with
sub property of: starts
sub property of: ends
type: TransitiveProperty
definition: Relation between occurrents, shares start and end boundaries.
term editor: David Osumi-Sutherland
database_cross_reference: RO:0002082
has_exact_synonym: coincides_with
has_exact_synonym: is_equal_to
has OBO namespace: uberon
id: simultaneous_with
in_subset: ro-eco
shorthand: simultaneous_with
comment: t1 simultaneous_with t2 iff:= t1 before_or_simultaneous_with t2 and not (t1 before t2)
label: simultaneous with

Axiom
annotated source: simultaneous_with
annotated property: definition
annotated target: Relation between occurrents, shares start and end boundaries.
database_cross_reference: https://orcid.org/0000-0002-6601-2165
database_cross_reference: Allen:is_equal_to

Axiom
annotated source: simultaneous_with
annotated property: definition
annotated target: Relation between occurrents, shares start and end boundaries.
database_cross_reference: Allen:is_equal_to
database_cross_reference: https://orcid.org/0000-0002-6601-2165

ends after
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
term editor: David Osumi-Sutherland
database_cross_reference: RO:0002086
in_subset: ro-eco
shorthand: ends_after
comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)

immediately_preceded_by
type: ObjectProperty
sub property of: preceded by
inverse of: immediately_precedes
property chain axiom: starts with
property chain axiom: ends with
definition: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
definition: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y).
term editor: David Osumi-Sutherland
alternative term: starts_at_end_of
UBPROP_0000001: A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251].
database_cross_reference: RO:0002087
has_exact_synonym: directly preceded by
has_exact_synonym: is directly preceded by
has_exact_synonym: is immediately preceded by
has_exact_synonym: starts_at_end_of
has OBO namespace: external
has OBO namespace: uberon
id: immediately_preceded_by
shorthand: immediately_preceded_by
comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
label: immediately preceded by

Axiom
annotated source: immediately_preceded_by
annotated property: UBPROP_0000001
annotated target: A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251].
source: SIO:000251

Axiom
annotated source: immediately_preceded_by
annotated property: has_exact_synonym
annotated target: is immediately preceded by
database_cross_reference: SIO:000251

immediately_precedes
type: ObjectProperty
sub property of: precedes
property chain axiom: ends with
property chain axiom: starts with
term editor: David Osumi-Sutherland
alternative term: ends_at_start_of
alternative term: meets
RO_0002575: precedes
database_cross_reference: RO:0002090
has OBO namespace: external
id: immediately_precedes
in_subset: ro-eco
shorthand: immediately_precedes
comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)
label: immediately precedes

has soma location
type: ObjectProperty
sub property of: overlaps
domain: neuron
property chain axiom: part of
has curation status: IAO_0000125
definition: Relation between a neuron and an anatomical structure that its soma is part of.
term editor: David Osumi-Sutherland
IAO_0000424: <http://purl.obolibrary.org/obo/BFO_0000051> some ( <http://purl.obolibrary.org/obo/GO_0043025> and <http://purl.obolibrary.org/obo/BFO_0000050> some ?Y)
temporal interpretation: RO_0001901

has plasma membrane part
type: ObjectProperty
sub property of: has part
example of usage: Every B cell[CL_0000236] has plasma membrane part some immunoglobulin complex[GO_0019814]
has curation status: IAO_0000125
definition: Holds between a cell c and a protein complex or protein p if and only if that cell has as part a plasma_membrane[GO:0005886], and that plasma membrane has p as part.
term editor: Alexander Diehl
term editor: Chris Mungall
term editor: Lindsay Cowell
definition source: http://www.ncbi.nlm.nih.gov/pubmed/19243617
IAO_0000424: <http://purl.obolibrary.org/obo/BFO_0000051> some (<http://purl.obolibrary.org/obo/GO_0005886> and <http://purl.obolibrary.org/obo/BFO_0000051> some ?Y)
temporal interpretation: RO_0001901

overlaps
type: ObjectProperty
sub property of: mereotopologically related to
property chain axiom: part of
property chain axiom: has part
has curation status: IAO_0000125
definition: x overlaps y if and only if there exists some z such that x has part z and z part of y
IAO_0000424: BFO_0000051 some (BFO_0000050 some ?Y)
IAO_0000424: http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)
temporal interpretation: RO_0001901
database_cross_reference: RO:0002131
has OBO namespace: external
has OBO namespace: uberon
id: overlaps
in_subset: valid for go annotation extension
in_subset: valid for gocam
in_subset: ro-eco
shorthand: overlaps

Axiom
annotated source: overlaps
annotated property: propertyChainAxiom
annotated target: has part
annotated target: part of
RO_0002582: true

innervates
type: ObjectProperty
property chain axiom: part of
has curation status: IAO_0000125
definition: Relation between a 'neuron projection bundle' and a region in which one or more of its component neuron projections either synapses to targets or receives synaptic input. T innervates some R Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.
term editor: David Osumi-Sutherland
IAO_0000424: <http://purl.obolibrary.org/obo/RO_0002132> some (<http://purl.obolibrary.org/obo/GO_0043005> that (<http://purl.obolibrary.org/obo/RO_0002131> some (<http://purl.obolibrary.org/obo/GO_0045202> that <http://purl.obolibrary.org/obo/BFO_0000050> some Y?)))
temporal interpretation: RO_0001901
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613
database_cross_reference: RO:0002134
has OBO namespace: uberon
id: innervates
shorthand: innervates
comment: http://code.google.com/p/obo-relations/issues/detail

continuous_with
type: ObjectProperty
sub property of: mereotopologically related to
type: SymmetricProperty
domain: independent continuant
range: independent continuant
has curation status: IAO_0000125
definition: X continuous_with Y if and only if X and Y share a fiat boundary.
term editor: David Osumi-Sutherland
alternative term: connected to
IAO_0000232: The label for this relation was previously connected to. I relabeled this to "continuous with". The standard notion of connectedness does not imply shared boundaries - e.g. Glasgow connected_to Edinburgh via M8; my patella connected_to my femur (via patellar-femoral joint)
temporal interpretation: RO_0001901
database_cross_reference: RO:0002150
has OBO namespace: uberon
id: continuous_with
shorthand: continuous_with
label: continuous with

only in taxon
type: ObjectProperty
sub property of: in taxon
example of usage: lactation SubClassOf 'only in taxon' some 'Mammalia'
has curation status: IAO_0000125
definition: S only_in_taxon T iff: S SubClassOf in_taxon only T.
definition: U only_in_taxon T: U is a feature found in only in organisms of species of taxon T. The feature cannot be found in an organism of any species outside of (not subsumed by) that taxon. Down-propagates in U hierarchy, up-propagates in T hierarchy (species taxonomy). Implies applicable_to_taxon.
definition: x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z.
editor note: The original intent was to treat this as a macro that expands to 'in taxon' only ?Y - however, this is not necessary if we instead have supplemental axioms that state that each pair of sibling tax have a disjointness axiom using the 'in taxon' property - e.g. 'in taxon' some Eukaryota DisjointWith 'in taxon' some Eubacteria
term editor: Chris Mungall
definition source: http://www.ncbi.nlm.nih.gov/pubmed/17921072
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20973947
database_cross_reference: RO:0002160
has_exact_synonym: never_outside_taxon
has_exact_synonym: specific_to
has_exact_synonym: specific_to_taxon
has OBO namespace: plant_ontology
has OBO namespace: protein
has OBO namespace: uberon
id: only_in_taxon
is transitive: false
shorthand: only_in_taxon
comment: Down-propagates. The original name for this in the paper is 'specific_to'. Applicable to genes because some genes are lost in sub-species (strains) of a species.
label: only_in_taxon

Axiom
annotated source: only in taxon
annotated property: definition
annotated target: S only_in_taxon T iff: S SubClassOf in_taxon only T.
database_cross_reference: http://www.ncbi.nlm.nih.gov/pubmed/20973947

Axiom
annotated source: only in taxon
annotated property: definition
annotated target: S only_in_taxon T iff: S SubClassOf in_taxon only T.
database_cross_reference: PMID:20973947

Axiom
annotated source: only in taxon
annotated property: definition
annotated target: U only_in_taxon T: U is a feature found in only in organisms of species of taxon T. The feature cannot be found in an organism of any species outside of (not subsumed by) that taxon. Down-propagates in U hierarchy, up-propagates in T hierarchy (species taxonomy). Implies applicable_to_taxon.
database_cross_reference: ROC:Waclaw

in taxon
type: ObjectProperty
sub property of: evolutionarily related to
range: organism or virus or viroid
property chain axiom: part of
property chain axiom: has part
property chain axiom: innervated_by
property chain axiom: overlaps
property chain axiom: continuous_with
property chain axiom: connected to
property chain axiom: connects
property chain axiom: supplies
property chain axiom: develops_from
property chain axiom: capable of
property chain axiom: develops_from_part_of
property chain axiom: has developmental contribution from
property chain axiom: developmentally_induced_by
property chain axiom: results in developmental progression of
property chain axiom: attaches_to
property chain axiom: has potential to develop into
property chain axiom: existence starts during
property chain axiom: existence ends during
property chain axiom: produces
property chain axiom: produced by
property chain axiom: extends_fibers_into
has curation status: IAO_0000125
definition: x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed.
term editor: Chris Mungall
term editor: Jennifer Deegan
definition source: http://www.ncbi.nlm.nih.gov/pubmed/17921072
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20973947
database_cross_reference: RO:0002162
has OBO namespace: uberon
id: in_taxon
in_subset: ro-eco
shorthand: in_taxon
comment: Connects a biological entity to its taxon of origin.

spatially disjoint from
type: ObjectProperty
sub property of: mereotopologically related to
has curation status: IAO_0000125
definition: A is spatially_disjoint_from B if and only if they have no parts in common
editor note: There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom.
term editor: Chris Mungall
definition source: http://www.ncbi.nlm.nih.gov/pubmed/22293552
IAO_0000232: Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy
IAO_0000424: BFO_0000051 exactly 0 (BFO_0000050 some ?Y)
temporal interpretation: RO_0001901
in_subset: ro-eco

connected to
type: ObjectProperty
sub property of: mereotopologically related to
sub property of: transitively_connected to
domain: Restriction
  on property: part of
  some values from: RO_0002577
range: Restriction
  on property: part of
  some values from: RO_0002577
property chain axiom:
  inverse of: connects
property chain axiom: connects
example of usage: a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones).
definition: Binary relationship: x connected_to y if and only if there exists some z such that z connects x and y in a ternary connected_to(x,y,z) relationship.
definition: a is connected to b if and only if a and b are discrete structure, and there exists some connecting structure c, such that c connects a and b
definition source: http://www.ncbi.nlm.nih.gov/pubmed/22293552
database_cross_reference: RO:0002170
has OBO namespace: uberon
id: connected_to
shorthand: connected_to
comment: Connection does not imply overlaps.

Axiom
annotated source: connected to
annotated property: definition
annotated target: Binary relationship: x connected_to y if and only if there exists some z such that z connects x and y in a ternary connected_to(x,y,z) relationship.
database_cross_reference: Connectivity-Design-Pattern

Axiom
annotated source: connected to
annotated property: definition
annotated target: Binary relationship: x connected_to y if and only if there exists some z such that z connects x and y in a ternary connected_to(x,y,z) relationship.
database_cross_reference: http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern

connects
type: ObjectProperty
sub property of: mereotopologically related to
domain: independent continuant
range: Restriction
  on property: part of
  some values from: RO_0002577
example of usage: The M8 connects Glasgow and Edinburgh
example of usage: a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones).
definition: Binary relationship: z connects x if and only if there exists some y such that z connects x and y in a ternary connected_to(x,y,z) relationship.
definition: c connects a if and only if there exist some b such that a and b are similar parts of the same system, and c connects b, specifically, c connects a with b. When one structure connects two others it unites some aspect of the function or role they play within the system.
editor note: this is currently used for both structural relationships (such as between a valve and the chamber it connects) and abstract relationships (anatomical lines and the entities they connect)
definition source: http://www.ncbi.nlm.nih.gov/pubmed/22293552
database_cross_reference: RO:0002176
has OBO namespace: uberon
id: connects
shorthand: connects

Axiom
annotated source: connects
annotated property: definition
annotated target: Binary relationship: z connects x if and only if there exists some y such that z connects x and y in a ternary connected_to(x,y,z) relationship.
database_cross_reference: Connectivity-Design-Pattern

Axiom
annotated source: connects
annotated property: definition
annotated target: Binary relationship: z connects x if and only if there exists some y such that z connects x and y in a ternary connected_to(x,y,z) relationship.
database_cross_reference: http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern

attaches_to_part_of
type: ObjectProperty
sub property of: mereotopologically related to
sub property of: biomechanically related to
domain: connected anatomical structure
range: connected anatomical structure
property chain axiom: attaches_to
property chain axiom: part of
definition: a is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b.
IAO_0000589: attached to part of (anatomical structure to anatomical structure)
database_cross_reference: RO:0002177
has OBO namespace: uberon
id: attaches_to_part_of
shorthand: attaches_to_part_of
label: attached to part of

Axiom
annotated source: attaches_to_part_of
annotated property: propertyChainAxiom
annotated target: attaches_to
annotated target: part of
IAO is reversible property chain: true

Axiom
annotated source: attaches_to_part_of
annotated property: propertyChainAxiom
annotated target: attaches_to
annotated target: part of
RO_0002582: true

supplies
type: ObjectProperty
sub property of: connected to
domain: UBERON_0001637
definition: Relation between an arterial structure and another structure, where the arterial structure acts as a conduit channeling fluid, substance or energy.
definition: relation between an artery and the structure is supplies with blood.
editor note: Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between an artery and an anatomical structure
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20064205
database_cross_reference: RO:0002178
has_exact_synonym: arterial supply of
has OBO namespace: uberon
id: supplies
shorthand: supplies
comment: source: FMA

Axiom
annotated source: supplies
annotated property: has_exact_synonym
annotated target: arterial supply of
database_cross_reference: FMA:86003

drains
type: ObjectProperty
sub property of: connected to
domain: UBERON_0001638
definition: Relation between an collecting structure and another structure, where the collecting structure acts as a conduit channeling fluid, substance or energy away from the other structure.
editor note: Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between a vein and an anatomical structure
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20064205
database_cross_reference: RO:0002179
has_exact_synonym: drains blood from
has_exact_synonym: drains from
has OBO namespace: uberon
id: drains
shorthand: drains
comment: source: Wikipedia

has component
type: ObjectProperty
sub property of: has part
has curation status: IAO_0000125
definition: w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
editor note: The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.
IAO_0000232: For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit.
temporal interpretation: RO_0001901
database_cross_reference: RO:0002180
has OBO namespace: external
has OBO namespace: protein
has OBO namespace: uberon
id: has_component
in_subset: ro-eco
is transitive: false
shorthand: has_component

develops_from
type: ObjectProperty
sub property of: has developmental contribution from
sub property of: developmentally preceded by
inverse of: develops_into
type: TransitiveProperty
domain: independent continuant
range: independent continuant
property chain axiom: part of
has curation status: IAO_0000125
definition: x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y
term editor: Chris Mungall
term editor: David Osumi-Sutherland
term editor: Melissa Haendel
term editor: Terry Meehan
database_cross_reference: RO:0002202
has OBO namespace: plant_ontology
has OBO namespace: uberon
id: develops_from
shorthand: develops_from
comment: This is the transitive form of the develops from relation
label: develops from

develops_into
type: ObjectProperty
sub property of: developmentally succeeded by
sub property of: has potential to develop into
sub property of: has potential to directly develop into
type: TransitiveProperty
has curation status: IAO_0000125
definition: inverse of develops from
term editor: Chris Mungall
term editor: David Osumi-Sutherland
term editor: Terry Meehan
database_cross_reference: RO:0002203
has OBO namespace: uberon
id: develops_into
in_subset: RO_0002259
shorthand: develops_into
label: develops into

directly_develops_from
type: ObjectProperty
sub property of: develops_from
inverse of: directly develops into
domain: Class
  union of: CARO_0010000
  union of: cell
range: Class
  union of: CARO_0010000
  union of: cell
has curation status: IAO_0000125
definition: Candidate definition: x directly_develops from y if and only if there exists some developmental process (GO:0032502) p such that x and y both participate in p, and x is the output of p and y is the input of p, and a substantial portion of the matter of x comes from y, and the start of x is coincident with or after the end of y.
term editor: Chris Mungall
term editor: David Osumi-Sutherland
term editor: has developmental precursor
definition source: FBbt
RO_0002575: develops_from
database_cross_reference: RO:0002207
has OBO namespace: uberon
id: directly_develops_from
shorthand: directly_develops_from
comment: TODO - add child relations from DOS
label: directly develops from

directly develops into
type: ObjectProperty
sub property of: develops_into
has curation status: IAO_0000125
definition: inverse of directly develops from
alternative term: developmental precursor of
in_subset: RO_0002259

regulates
type: ObjectProperty
sub property of: causally upstream of
inverse of: regulated by
type: TransitiveProperty
domain: process
range: process
property chain axiom: has effector activity
property chain axiom: ends with
property chain axiom: directly regulates
has curation status: IAO_0000125
definition: process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.
editor note: We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit
term editor: Chris Mungall
term editor: David Hill
term editor: Tanya Berardini
definition source: causal-relations
definition source: GO
IAO_0000232: Regulation precludes parthood; the regulatory process may not be within the regulated process.
IAO_0000589: regulates (processual)
IAO_0000600: false
database_cross_reference: RO:0002211
has OBO namespace: external
id: regulates
in_subset: valid for go annotation extension
in_subset: valid for go gp2term
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: regulates

negatively regulates
type: ObjectProperty
sub property of: regulates
sub property of: causally upstream of, negative effect
inverse of: negatively regulated by
property chain axiom: ends with
definition: Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
term editor: Chris Mungall
definition source: causal-relations
IAO_0000589: negatively regulates (process to process)
RO_0004050: regulates
database_cross_reference: RO:0002212
has OBO namespace: external
id: negatively_regulates
in_subset: valid for go annotation extension
in_subset: valid for go gp2term
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: negatively_regulates

positively regulates
type: ObjectProperty
sub property of: regulates
sub property of: causally upstream of, positive effect
inverse of: positively regulated by
type: TransitiveProperty
property chain axiom: negatively regulates
property chain axiom: ends with
definition: Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
term editor: Chris Mungall
definition source: causal-relations
IAO_0000589: positively regulates (process to process)
RO_0004049: regulates
database_cross_reference: RO:0002213
has OBO namespace: external
id: positively_regulates
in_subset: valid for go annotation extension
in_subset: valid for go gp2term
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: positively_regulates

capable of
type: ObjectProperty
sub property of: capable of part of
sub property of: functionally related to
domain: independent continuant
range: process
example of usage: mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)
example of usage: osteoclast SubClassOf 'capable of' some 'bone resorption'
definition: A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
term editor: Chris Mungall
alternative term: has function realized in
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20123131
definition source: http://www.ncbi.nlm.nih.gov/pubmed/21208450
IAO_0000232: For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".
IAO_0000424: RO_0000053 some (RO_0000054 only ?Y)
database_cross_reference: RO:0002215
has OBO namespace: external
has OBO namespace: protein
has OBO namespace: uberon
id: capable_of
in_subset: ro-eco
is transitive: false
shorthand: capable_of

capable of part of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal agent in process
property chain axiom: capable of
property chain axiom: part of
definition: c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
term editor: Chris Mungall
alternative term: has function in
IAO_0000424: RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))
database_cross_reference: RO:0002216
has OBO namespace: external
has OBO namespace: uberon
id: capable_of_part_of
shorthand: capable_of_part_of

Axiom
annotated source: capable of part of
annotated property: propertyChainAxiom
annotated target: capable of
annotated target: part of
RO_0002582: true

obsolete has active participant
type: ObjectProperty
definition: OBSOLETE x has participant y if and only if x realizes some active role that inheres in y
term editor: Chris Mungall
alternative term: has agent
IAO_0100001: causal agent in process
deprecated: true

surrounded by
type: ObjectProperty
sub property of: adjacent to
inverse of: surrounds
has curation status: IAO_0000125
definition: x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x
definition: x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y
definition: x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y.
term editor: Chris Mungall
temporal interpretation: RO_0001901
database_cross_reference: RO:0002219
has OBO namespace: uberon
id: surrounded_by
shorthand: surrounded_by
label: surrounded_by

Axiom
annotated source: surrounded by
annotated property: definition
annotated target: x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: surrounded by
annotated property: definition
annotated target: x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: surrounded by
annotated property: definition
annotated target: x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

adjacent to
type: ObjectProperty
sub property of: spatially disjoint from
type: SymmetricProperty
domain: independent continuant
range: independent continuant
example of usage: A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.
example of usage: The epidermis layer of a vertebrate is adjacent to the dermis.
example of usage: The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies.
example of usage: The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used.
has curation status: IAO_0000125
definition: x adjacent to y if and only if x and y share a boundary.
definition: x adjacent_to y iff: x and y share a boundary
definition: x adjacent_to y iff: x and y share a boundary.
editor note: This relation acts as a join point with BSPO
term editor: Chris Mungall
temporal interpretation: RO_0001901
database_cross_reference: RO:0002220
has OBO namespace: external
has OBO namespace: uberon
id: adjacent_to
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: adjacent_to
label: adjacent_to

Axiom
annotated source: adjacent to
annotated property: example of usage
annotated target: A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.

surrounds
type: ObjectProperty
sub property of: adjacent to
has curation status: IAO_0000125
definition: inverse of surrounded by
definition: inverse of surrounded_by
definition: inverse of surrounded_by.
term editor: Chris Mungall
temporal interpretation: RO_0001901
database_cross_reference: RO:0002221
has OBO namespace: uberon
id: surrounds
in_subset: RO_0002259
shorthand: surrounds

Axiom
annotated source: surrounds
annotated property: definition
annotated target: inverse of surrounded_by
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: surrounds
annotated property: definition
annotated target: inverse of surrounded_by.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: surrounds
annotated property: definition
annotated target: inverse of surrounded_by.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

temporally related to
type: ObjectProperty
domain: occurrent
range: occurrent
has curation status: IAO_0000125
term editor: Chris Mungall
definition source: Allen's interval algebra
IAO_0000232: Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.
source: https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit
database_cross_reference: RO:0002222
in_subset: ro-eco
shorthand: temporally_related_to
comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.

starts
type: ObjectProperty
sub property of: part of
sub property of: temporally related to
inverse of: starts with
has curation status: IAO_0000125
definition: Relation between occurrents, shares a start boundary with.
definition: inverse of starts with
term editor: Chris Mungall
definition source: Allen
database_cross_reference: RO:0002223
has OBO namespace: uberon
id: starts
in_subset: ro-eco
shorthand: starts

Axiom
annotated source: starts
annotated property: definition
annotated target: Relation between occurrents, shares a start boundary with.
database_cross_reference: https://orcid.org/0000-0002-6601-2165
database_cross_reference: Allen:starts

Axiom
annotated source: starts
annotated property: definition
annotated target: Relation between occurrents, shares a start boundary with.
database_cross_reference: Allen:starts
database_cross_reference: https://orcid.org/0000-0002-6601-2165

starts with
type: ObjectProperty
sub property of: has part
sub property of: temporally related to
type: TransitiveProperty
example of usage: Every insulin receptor signaling pathway starts with the binding of a ligand to the insulin receptor
has curation status: IAO_0000125
definition: x starts with y if and only if x has part y and the time point at which x starts is equivalent to the time point at which y starts. Formally: α(y) = α(x) ∧ ω(y) < ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
term editor: Chris Mungall
alternative term: started by
database_cross_reference: RO:0002224
has OBO namespace: external
has OBO namespace: uberon
id: starts_with
in_subset: ro-eco
shorthand: starts_with

develops_from_part_of
type: ObjectProperty
sub property of: develops_from
property chain axiom: directly_develops_from
property chain axiom: part of
has curation status: IAO_0000125
definition: x develops from part of y if and only if there exists some z such that x develops from z and z is part of y
term editor: Chris Mungall
database_cross_reference: RO:0002225
has OBO namespace: uberon
id: develops_from_part_of
shorthand: develops_from_part_of
label: develops from part of

develops_in
type: ObjectProperty
sub property of: developmentally preceded by
domain: anatomical entity
property chain axiom: directly_develops_from
property chain axiom: located_in
has curation status: IAO_0000125
definition: x develops_in y if x is located in y whilst x is developing
term editor: Chris Mungall
definition source: EHDAA2
definition source: Jonathan Bard, EHDAA2
database_cross_reference: RO:0002226
has OBO namespace: uberon
id: develops_in
shorthand: develops_in
comment: This relation take from EHDAA2 - precise semantics yet to be defined
label: develops in

ends
type: ObjectProperty
sub property of: part of
sub property of: temporally related to
inverse of: ends with
has curation status: IAO_0000125
definition: Relation between occurrents, shares an end boundary with.
definition: inverse of ends with
term editor: Chris Mungall
database_cross_reference: RO:0002229
has_exact_synonym: finishes
has OBO namespace: uberon
id: ends
in_subset: ro-eco
shorthand: ends

Axiom
annotated source: ends
annotated property: definition
annotated target: Relation between occurrents, shares an end boundary with.
database_cross_reference: https://orcid.org/0000-0002-6601-2165
database_cross_reference: Allen:starts
database_cross_reference: ZFS:finishes

Axiom
annotated source: ends
annotated property: definition
annotated target: Relation between occurrents, shares an end boundary with.
database_cross_reference: Allen:starts
database_cross_reference: ZFS:finishes
database_cross_reference: https://orcid.org/0000-0002-6601-2165

ends with
type: ObjectProperty
sub property of: has part
sub property of: temporally related to
type: TransitiveProperty
has curation status: IAO_0000125
definition: x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
term editor: Chris Mungall
alternative term: finished by
database_cross_reference: RO:0002230
has OBO namespace: external
has OBO namespace: uberon
id: ends_with
in_subset: ro-eco
shorthand: ends_with

has start location
type: ObjectProperty
sub property of: has part that occurs in
domain: process
range: independent continuant
property chain axiom: starts with
property chain axiom: occurs in
has curation status: IAO_0000125
definition: x 'has starts location' y if and only if there exists some process z such that x 'starts with' z and z 'occurs in' y
term editor: Chris Mungall
alternative term: starts with process that occurs in
database_cross_reference: RO:0002231
has OBO namespace: external
id: has_start_location
in_subset: ro-eco
shorthand: has_start_location

has end location
type: ObjectProperty
sub property of: has part that occurs in
domain: process
range: independent continuant
property chain axiom: ends with
property chain axiom: occurs in
has curation status: IAO_0000125
definition: x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y
term editor: Chris Mungall
alternative term: ends with process that occurs in
database_cross_reference: RO:0002232
has OBO namespace: external
id: has_end_location
in_subset: ro-eco
shorthand: has_end_location

has input
type: ObjectProperty
sub property of: has participant
inverse of: input of
domain: process
range: material entity
property chain axiom: starts with
has curation status: IAO_0000125
definition: p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
term editor: Chris Mungall
alternative term: consumes
database_cross_reference: RO:0002233
has OBO namespace: external
id: has_input
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
in_subset: ro-eco
shorthand: has_input

has output
type: ObjectProperty
sub property of: has participant
inverse of: output of
property chain axiom: ends with
has curation status: IAO_0000125
definition: p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p.
definition: p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p.
term editor: Chris Mungall
alternative term: produces
database_cross_reference: RO:0002234
has OBO namespace: external
id: has_output
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
in_subset: ro-eco
shorthand: has_output

has developmental contribution from
type: ObjectProperty
sub property of: developmentally preceded by
inverse of: developmentally_contributes_to
type: TransitiveProperty
domain: anatomical entity
range: anatomical entity
property chain axiom: has part
property chain axiom: develops_from
example of usage: Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]
has curation status: IAO_0000125
definition: x has developmental contribution from y iff x has some part z such that z develops from y
term editor: Chris Mungall
database_cross_reference: RO:0002254
has OBO namespace: uberon
id: has_developmental_contribution_from
shorthand: has_developmental_contribution_from

developmentally_contributes_to
type: ObjectProperty
sub property of: developmentally succeeded by
sub property of: has potential to developmentally contribute to
property chain axiom: develops_into
property chain axiom: part of
has curation status: IAO_0000125
definition: inverse of has developmental contribution from
term editor: Chris Mungall
database_cross_reference: RO:0002255
has OBO namespace: uberon
id: developmentally_contributes_to
in_subset: RO_0002259
shorthand: developmentally_contributes_to
label: developmentally contributes to

developmentally_induced_by
type: ObjectProperty
sub property of: developmentally preceded by
inverse of: developmentally induces
domain: connected anatomical structure
range: connected anatomical structure
has curation status: IAO_0000125
definition: t1 developmentally_induced_by t2 if there is a process of organ induction (GO:0001759) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor tissue type T to T', where T' develops_from T.
definition: t1 induced_by t2 if there is a process of developmental induction (GO:0031128) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor anatomical structure type T to T', where T' develops_from T
term editor: Chris Mungall
term editor: David Osumi-Sutherland
term editor: Melissa Haendel
alternative term: induced by
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20064205
definition source: Developmental Biology, Gilbert, 8th edition, figure 6.5(F)
definition source: GO:0001759
IAO_0000232: We place this under 'developmentally preceded by'. This placement should be examined in the context of reciprocal inductions[cjm]
database_cross_reference: RO:0002256
has OBO namespace: uberon
id: developmentally_induced_by
shorthand: developmentally_induced_by
comment: sources for developmentally_induced_by relationships in Uberon: Developmental Biology, Gilbert, 8th edition, figure 6.5(F)
label: developmentally induced by

Axiom
annotated source: developmentally_induced_by
annotated property: definition
annotated target: t1 developmentally_induced_by t2 if there is a process of organ induction (GO:0001759) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor tissue type T to T', where T' develops_from T.
database_cross_reference: GO:0001759

developmentally induces
type: ObjectProperty
sub property of: developmentally succeeded by
sub property of: has potential to developmentally induce
has curation status: IAO_0000125
definition: Inverse of developmentally induced by
term editor: Chris Mungall

developmentally preceded by
type: ObjectProperty
sub property of: developmentally related to
inverse of: developmentally succeeded by
domain: continuant
range: continuant
has curation status: IAO_0000125
definition: Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p
definition: X developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p.
editor note: false
term editor: Chris Mungall
IAO_0000232: In general you should not use this relation to make assertions - use one of the more specific relations below this one
created by: Laurel_Cooper
creation date: 2013-06-27T13:16:56Z
database_cross_reference: RO:0002258
has OBO namespace: plant_ontology
has OBO namespace: uberon
id: developmentally_preceded_by
shorthand: developmentally_preceded_by
comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from
label: developmentally_preceded_by

Axiom
annotated source: developmentally preceded by
annotated property: definition
annotated target: X developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p.
database_cross_reference: RO:0002258

acts upstream of
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of
example of usage: A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.
definition: c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.
in_subset: valid for go gp2term

acts upstream of or within
type: ObjectProperty
sub property of: causal agent in process
property chain axiom: enables
property chain axiom: causally upstream of or within
example of usage: A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.
definition: c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.
has_related_synonym: affects
in_subset: valid for go gp2term

developmentally_replaces
type: ObjectProperty
sub property of: developmentally preceded by
has curation status: IAO_0000125
definition: x developmentally replaces y if and only if there is some developmental process that causes x to move or to cease to exist, and for the site that was occupied by x to become occupied by y, where y either comes into existence in this site or moves to this site from somewhere else
editor note: This relation is intended for cases such as when we have a bone element replacing its cartilage element precursor. Currently most AOs represent this using 'develops from'. We need to decide whether 'develops from' will be generic and encompass replacement, or whether we need a new name for a generic relation that encompasses replacement and development-via-cell-lineage
term editor: Chris Mungall
alternative term: replaces
database_cross_reference: RO:0002285
has OBO namespace: uberon
id: developmentally_replaces
shorthand: developmentally_replaces
label: developmentally replaces

developmentally succeeded by
type: ObjectProperty
sub property of: has developmental potential involving
has curation status: IAO_0000125
definition: Inverse of developmentally preceded by
term editor: Chris Mungall
database_cross_reference: RO:0002286
shorthand: developmentally_succeeded_by

part of developmental precursor of
type: ObjectProperty
sub property of: developmentally succeeded by
property chain axiom: part of
property chain axiom: directly develops into
example of usage: 'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue
has curation status: IAO_0000125
term editor: Chris Mungall

results in developmental progression of
type: ObjectProperty
sub property of: developmentally related to
domain: GO_0008150
range: connected anatomical structure
has curation status: IAO_0000125
definition: p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).
editor note: This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint.
term editor: Chris Mungall
database_cross_reference: RO:0002295
has OBO namespace: external
id: results_in_developmental_progression_of
shorthand: results_in_developmental_progression_of

results in development of
type: ObjectProperty
sub property of: results in developmental progression of
sub property of: results in changes to anatomical or cellular structure
example of usage: every flower development (GO:0009908) results in development of some flower (PO:0009046)
has curation status: IAO_0000125
definition: p 'results in development of' c if and only if p is a developmental process and p results in the state of c changing from its initial state as a primordium or anlage through its mature state and to its final state.
term editor: Chris Mungall
definition source: http://www.geneontology.org/GO.doc.development.shtml
database_cross_reference: RO:0002296
has OBO namespace: external
id: results_in_development_of
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: results_in_development_of

results in formation of
type: ObjectProperty
sub property of: has output
sub property of: results in developmental progression of
inverse of: formed as result of
example of usage: an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists.
example of usage: every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062)
has curation status: IAO_0000125
term editor: Chris Mungall
definition source: GOC:mtg_berkeley_2013
database_cross_reference: RO:0002297
has OBO namespace: external
id: results_in_formation_of
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: results_in_formation_of

results in morphogenesis of
type: ObjectProperty
sub property of: results in developmental progression of
sub property of: results in changes to anatomical or cellular structure
example of usage: an annotation of gene X to cell morphogenesis with results_in_morphogenesis_of CL:0000540 (neuron) means that at the end of the process an input neuron has attained its shape.
example of usage: tongue morphogenesis (GO:0043587) results in morphogenesis of tongue (UBERON:0001723)
has curation status: IAO_0000125
definition: The relationship that links an entity with the process that results in the formation and shaping of that entity over time from an immature to a mature state.
term editor: Chris Mungall
definition source: GOC:mtg_berkeley_2013
database_cross_reference: RO:0002298
has OBO namespace: external
id: results_in_morphogenesis_of
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: results_in_morphogenesis_of

results in maturation of
type: ObjectProperty
sub property of: results in developmental progression of
sub property of: results in changes to anatomical or cellular structure
example of usage: an annotation of gene X to cell maturation with results_in_maturation_of CL:0000057 (fibroblast) means that the fibroblast is mature at the end of the process
example of usage: bone maturation (GO:0070977) results_in_maturation_of bone (UBERON:0001474)
has curation status: IAO_0000125
definition: The relationship that links an entity with a process that results in the progression of the entity over time that is independent of changes in it's shape and results in an end point state of that entity.
term editor: Chris Mungall
definition source: GOC:mtg_berkeley_2013
database_cross_reference: RO:0002299
has OBO namespace: external
id: results_in_maturation_of
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: results_in_maturation_of

has habitat
type: ObjectProperty
sub property of: ecologically related to
example of usage: Hydrozoa (NCBITaxon_6074) SubClassOf 'has habitat' some 'Hydrozoa habitat' where 'Hydrozoa habitat' SubClassOf overlaps some ('marine environment' (ENVO_00000569) and 'freshwater environment' (ENVO_01000306) and 'wetland' (ENVO_00000043)) and 'has part' some (freshwater (ENVO_00002011) or 'sea water' (ENVO_00002149)) -- http://eol.org/pages/1795/overview
has curation status: IAO_0000428
definition: x 'has habitat' y if and only if: x is an organism, y is a habitat, and y can sustain and allow the growth of a population of xs.
term editor: Pier Buttigieg
alternative term: adapted for living in
in_subset: ro-eco
comment: A population of xs will possess adaptations (either evolved naturally or via artifical selection) which permit it to exist and grow in y.

causally upstream of, positive effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, positive effect
RO_0004049: causally upstream of
creator: cjm
database_cross_reference: RO:0002304
has OBO namespace: external
id: causally_upstream_of,_positive_effect
in_subset: valid for go annotation extension
in_subset: valid for gocam
shorthand: causally_upstream_of,_positive_effect
comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y

causally upstream of, negative effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, negative effect
RO_0004050: causally upstream of
creator: cjm
database_cross_reference: RO:0002305
has OBO namespace: external
id: causally_upstream_of,_negative_effect
shorthand: causally_upstream_of,_negative_effect
comment: holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y

transports or maintains localization of
type: ObjectProperty
sub property of: related via localization to
sub property of: results in changes to anatomical or cellular structure
definition: Holds between p and c when p is a localization process (localization covers maintenance of localization as well as its establishment) and the outcome of this process is to regulate the localization of c.
term editor: Chris Mungall
alternative term: regulates localization of
database_cross_reference: RO:0002313
has OBO namespace: external
id: transports_or_maintains_localization_of
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: transports_or_maintains_localization_of

characteristic of part of
type: ObjectProperty
sub property of: depends on
property chain axiom: characteristic of
property chain axiom: part of
definition: q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.
editor note: Because part_of is transitive, inheres in is a sub-relation of characteristic of part of
term editor: Chris Mungall
alternative term: inheres in part of
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20064205
temporal interpretation: RO_0001901

Axiom
annotated source: characteristic of part of
annotated property: propertyChainAxiom
annotated target: characteristic of
annotated target: part of
RO_0002582: true

results in acquisition of features of
type: ObjectProperty
sub property of: results in developmental progression of
sub property of: results in changes to anatomical or cellular structure
example of usage: an annotation of gene X to cell differentiation with results_in_maturation_of CL:0000057 (fibroblast) means that at the end of the process the input cell that did not have features of a fibroblast, now has the features of a fibroblast.
definition: The relationship that links a specified entity with the process that results in an unspecified entity acquiring the features and characteristics of the specified entity
term editor: Chris Mungall
definition source: GOC:mtg_berkeley_2013
database_cross_reference: RO:0002315
has OBO namespace: external
id: results_in_acquisition_of_features_of
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: results_in_acquisition_of_features_of

evolutionarily related to
type: ObjectProperty
definition: A relationship that holds via some environmental process
term editor: Chris Mungall
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the process of evolution.

ecologically related to
type: ObjectProperty
definition: A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)
editor note: Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6
term editor: Chris Mungall
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions
in_subset: ro-eco

mereotopologically related to
type: ObjectProperty
definition: A mereological relationship or a topological relationship
term editor: Chris Mungall
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships
temporal interpretation: RO_0001901
database_cross_reference: RO:0002323
shorthand: mereotopologically_related_to

developmentally related to
type: ObjectProperty
definition: A relationship that holds between entities participating in some developmental process (GO:0032502)
term editor: Chris Mungall
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development
database_cross_reference: RO:0002324
shorthand: developmentally_related_to

enables
type: ObjectProperty
sub property of: capable of
inverse of: enabled by
property chain axiom: has part
property chain axiom: has component activity
example of usage: a particular instances of akt-2 enables some instance of protein kinase activity
term editor: Chris Mungall
alternative term: catalyzes
alternative term: executes
alternative term: has
alternative term: is catalyzing
alternative term: is executing
IAO_0000232: This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.
IAO_0000232: This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time.
in_subset: valid for go gp2term

functionally related to
type: ObjectProperty
definition: A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.
term editor: Chris Mungall
IAO_0000232: This is a grouping relation that collects relations used for the purpose of connecting structure and function
database_cross_reference: RO:0002328
has OBO namespace: uberon
id: functionally_related_to
shorthand: functionally_related_to

part of structure that is capable of
type: ObjectProperty
sub property of: functionally related to
property chain axiom: part of
property chain axiom: capable of
definition: this relation holds between c and p when c is part of some c', and c' is capable of p.
term editor: Chris Mungall
alternative term: false
database_cross_reference: RO:0002329
has OBO namespace: uberon
id: part_of_structure_that_is_capable_of
shorthand: part_of_structure_that_is_capable_of

Axiom
annotated source: part of structure that is capable of
annotated property: propertyChainAxiom
annotated target: part of
annotated target: capable of
is a defining property chain axiom: true

involved in
type: ObjectProperty
sub property of: participates in
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: part of
definition: c involved_in p if and only if c enables some process p', and p' is part of p
term editor: Chris Mungall
alternative term: actively involved in
alternative term: enables part of

enabled by
type: ObjectProperty
sub property of: has participant
sub property of: functionally related to
definition: inverse of enables
term editor: Chris Mungall
in_subset: valid for gocam

regulated by
type: ObjectProperty
sub property of: causally downstream of or within
type: TransitiveProperty
domain: process
range: process
definition: inverse of regulates
term editor: Chris Mungall
IAO_0000589: regulated by (processual)
database_cross_reference: RO:0002334
has OBO namespace: external
id: regulated_by
in_subset: RO_0002259
shorthand: regulated_by

negatively regulated by
type: ObjectProperty
sub property of: regulated by
definition: inverse of negatively regulates
term editor: Chris Mungall
database_cross_reference: RO:0002335
has OBO namespace: external
id: negatively_regulated_by
in_subset: RO_0002259
shorthand: negatively_regulated_by

positively regulated by
type: ObjectProperty
sub property of: regulated by
definition: inverse of positively regulates
term editor: Chris Mungall
database_cross_reference: RO:0002336
has OBO namespace: external
id: positively_regulated_by
in_subset: RO_0002259
shorthand: positively_regulated_by

related via localization to
type: ObjectProperty
domain: process
range: continuant
definition: A relationship that holds via some process of localization
term editor: Chris Mungall
IAO_0000232: Do not use this relation directly. It is a grouping relation.

has target start location
type: ObjectProperty
sub property of: results in transport to from or in
property chain axiom: part of
definition: This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from some initial location l to some destination.
term editor: Chris Mungall
database_cross_reference: RO:0002338
has OBO namespace: external
id: has_target_start_location
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: has_target_start_location

has target end location
type: ObjectProperty
sub property of: results in transport to from or in
property chain axiom: part of
definition: This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from a an initial location to some destination l.
term editor: Chris Mungall
database_cross_reference: RO:0002339
has OBO namespace: external
id: has_target_end_location
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: has_target_end_location

results in transport along
type: ObjectProperty
sub property of: related via localization to
definition: Holds between p and l when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that is aligned_with l
term editor: Chris Mungall
database_cross_reference: RO:0002341
has OBO namespace: external
id: results_in_transport_along
shorthand: results_in_transport_along

results in growth of
type: ObjectProperty
sub property of: results in developmental progression of
sub property of: results in changes to anatomical or cellular structure
example of usage: 'pollen tube growth' results_in growth_of some 'pollen tube'
term editor: Chris Mungall
database_cross_reference: RO:0002343
has OBO namespace: external
id: results_in_growth_of
shorthand: results_in_growth_of

results in transport to from or in
type: ObjectProperty
sub property of: related via localization to
example of usage: 'mitochondrial transport' results_in_transport_to_from_or_in some mitochondrion (GO:0005739)
term editor: Chris Mungall
database_cross_reference: RO:0002344
has OBO namespace: external
id: results_in_transport_to_from_or_in
shorthand: results_in_transport_to_from_or_in

member of
type: ObjectProperty
sub property of: part of
inverse of: has member
example of usage: An organism that is a member of a population of organisms
definition: is member of is a mereological relation between a item and a collection.
alternative term: is member of
alternative term: member part of
definition source: SIO
temporal interpretation: RO_0001901
database_cross_reference: RO:0002350
has OBO namespace: uberon
id: member_of
shorthand: member_of

has member
type: ObjectProperty
sub property of: has part
type: IrreflexiveProperty
definition: has member is a mereological relation between a collection and an item.
definition source: SIO
temporal interpretation: RO_0001901
database_cross_reference: RO:0002351
has OBO namespace: uberon
id: has_member
shorthand: has_member

input of
type: ObjectProperty
sub property of: participates in
sub property of: functionally related to
definition: inverse of has input
term editor: Chris Mungall
database_cross_reference: RO:0002352
has OBO namespace: uberon
id: input_of
in_subset: RO_0002259
in_subset: ro-eco
shorthand: input_of

output of
type: ObjectProperty
sub property of: participates in
sub property of: functionally related to
definition: inverse of has output
term editor: Chris Mungall
database_cross_reference: RO:0002353
has OBO namespace: external
has OBO namespace: protein
has OBO namespace: uberon
id: output_of
in_subset: RO_0002259
in_subset: ro-eco
is transitive: false
shorthand: output_of

formed as result of
type: ObjectProperty
sub property of: output of
term editor: Chris Mungall

attaches_to
type: ObjectProperty
sub property of: connected to
sub property of: connects
sub property of: attaches_to_part_of
type: SymmetricProperty
definition: a is attached to b if and only if a and b are discrete objects or object parts, and there are physical connections between a and b such that a force pulling a will move b, or a force pulling b will move a
term editor: Chris Mungall
IAO_0000589: attached to (anatomical structure to anatomical structure)
database_cross_reference: RO:0002371
has OBO namespace: uberon
id: attaches_to
in_subset: ro-eco
shorthand: attaches_to
label: attached to

has_muscle_insertion
type: ObjectProperty
sub property of: attaches_to
sub property of: biomechanically related to
domain: connected anatomical structure
definition: m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone.
term editor: Chris Mungall
definition source: Wikipedia:Insertion_(anatomy)
database_cross_reference: RO:0002373
has OBO namespace: uberon
id: has_muscle_insertion
shorthand: has_muscle_insertion
comment: The insertion is the point of attachment of a muscle that moves the most when the muscle shortens, or the most distal end of limb muscles
label: has muscle insertion

Axiom
annotated source: has_muscle_insertion
annotated property: domain
annotated target: connected anatomical structure
editor note: We need to import uberon muscle into RO to use as a stricter domain constraint

Axiom
annotated source: has_muscle_insertion
annotated property: definition
annotated target: m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone.
database_cross_reference: Insertion (anatomy)

Axiom
annotated source: has_muscle_insertion
annotated property: definition
annotated target: m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone.
database_cross_reference: Wikipedia:Insertion_(anatomy)

in branching relationship with
type: ObjectProperty
sub property of: part of
sub property of: mereotopologically related to
domain: material entity
range: material entity
has curation status: IAO_0000428
definition: A relationship that holds between two material entities in a system of connected structures, where the branching relationship holds based on properties of the connecting network.
term editor: Chris Mungall
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving branching relationships
IAO_0000232: This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (plant branches and roots, leaf veins, animal veins, arteries, nerves)
RO_0004036: part of

tributary_of
type: ObjectProperty
sub property of: connected to
sub property of: in branching relationship with
example of usage: Deschutes River tributary_of Columbia River
example of usage: inferior epigastric vein tributary_of external iliac vein
has curation status: IAO_0000428
definition: x tributary_of y if and only if x a channel for the flow of a substance into y, where y is larger than x. If x and y are hydrographic features, then y is the main stem of a river, or a lake or bay, but not the sea or ocean. If x and y are anatomical, then y is a vein.
term editor: Chris Mungall
alternative term: drains into
alternative term: drains to
alternative term: tributary channel of
definition source: http://en.wikipedia.org/wiki/Tributary
definition source: http://www.medindia.net/glossary/venous_tributary.htm
IAO_0000232: This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (veins, arteries)
database_cross_reference: RO:0002376
has OBO namespace: uberon
has_related_synonym: drains into
id: tributary_of
in_subset: ro-eco
shorthand: tributary_of
label: tributary of

Axiom
annotated source: tributary_of
annotated property: has_related_synonym
annotated target: drains into
database_cross_reference: dbpowl:drainsTo

spatially coextensive with
type: ObjectProperty
sub property of: overlaps
property chain axiom: located_in
property chain axiom:
  inverse of: located_in
example of usage: A lump of clay and a statue
definition: x spatially_coextensive_with y if and inly if x and y have the same location
term editor: Chris Mungall
IAO_0000232: This relation is added for formal completeness. It is unlikely to be used in many practical scenarios

branching_part_of
type: ObjectProperty
sub property of: part of
sub property of: in branching relationship with
inverse of: has branching part
range: Restriction
  on property: bearer of
  some values from: PATO_0000402
example of usage: In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is a (direct) branching part of T. B1-1, B1-2, and B1-3 are also branching parts of T, but these are considered indirect branching parts as they do not directly connect to the main stem S
definition: x is a branching part of y if and only if x is part of y and x is connected directly or indirectly to the main stem of y
editor note: we need to check if FMA branch_of implies part_of. the relation we intend to use here should - for example, see vestibulocochlear nerve
term editor: Chris Mungall
database_cross_reference: RO:0002380
has OBO namespace: uberon
id: branching_part_of
in_subset: ro-eco
shorthand: branching_part_of
label: branching part of

has developmental potential involving
type: ObjectProperty
sub property of: developmentally related to
domain: anatomical entity
range: anatomical entity
has curation status: IAO_0000428
definition: x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).
term editor: Chris Mungall
database_cross_reference: RO:0002384
shorthand: has_developmental_potential_involving

has potential to developmentally contribute to
type: ObjectProperty
sub property of: has developmental potential involving
has curation status: IAO_0000428
definition: x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y
definition: x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y.
term editor: Chris Mungall
database_cross_reference: RO:0002385
has OBO namespace: uberon
id: has_potential_to_developmentally_contribute_to
shorthand: has_potential_to_developmentally_contribute_to

has potential to developmentally induce
type: ObjectProperty
sub property of: has developmental potential involving
has curation status: IAO_0000428
definition: x has potential to developmentally induce y iff x developmentally induces y or x is capable of developmentally inducing y
term editor: Chris Mungall

has potential to develop into
type: ObjectProperty
sub property of: has developmental potential involving
has curation status: IAO_0000428
definition: x has the potential to develop into y iff x develops into y or if x is capable of developing into y
definition: x has the potential to develop into y iff x develops into y or if x is capable of developing into y.
term editor: Chris Mungall
database_cross_reference: RO:0002387
has OBO namespace: uberon
id: has_potential_to_develop_into
shorthand: has_potential_to_develop_into

has potential to directly develop into
type: ObjectProperty
sub property of: has potential to develop into
has curation status: IAO_0000428
definition: x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y
definition: x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y.
term editor: Chris Mungall
database_cross_reference: RO:0002388
has OBO namespace: uberon
id: has_potential_to_directly_develop_into
shorthand: has_potential_to_directly_develop_into

causally downstream of
type: ObjectProperty
sub property of: preceded by
sub property of: causally downstream of or within
inverse of: causally upstream of
has curation status: IAO_0000428
definition: inverse of upstream of
term editor: Chris Mungall
database_cross_reference: RO:0002404
has OBO namespace: external
id: causally_downstream_of
shorthand: causally_downstream_of

immediately causally downstream of
type: ObjectProperty
sub property of: immediately_preceded_by
sub property of: causally downstream of
inverse of: immediately causally upstream of
has curation status: IAO_0000428
term editor: Chris Mungall
database_cross_reference: RO:0002405
has OBO namespace: external
id: immediately_causally_downstream_of
shorthand: immediately_causally_downstream_of

causally related to
type: ObjectProperty
has curation status: IAO_0000428
definition: This relation groups causal relations between material entities and causal relations between processes
editor note: This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. To define causal relations in an activity-flow type network, we make use of 3 primitives: * Temporal: how do the intervals of the two occurrents relate? * Is the causal relation regulatory? * Is the influence positive or negative The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. Each of these 3 primitives can be composed to yiel…
term editor: Chris Mungall
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
database_cross_reference: RO:0002410
shorthand: causally_related_to

causally upstream of
type: ObjectProperty
sub property of: precedes
sub property of: causally upstream of or within
type: TransitiveProperty
has curation status: IAO_0000428
definition: p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain
term editor: Chris Mungall
database_cross_reference: RO:0002411
has OBO namespace: external
id: causally_upstream_of
in_subset: valid for go annotation extension
in_subset: valid for gocam
shorthand: causally_upstream_of

immediately causally upstream of
type: ObjectProperty
sub property of: immediately_precedes
sub property of: causally upstream of
has curation status: IAO_0000428
definition: p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.
term editor: Chris Mungall
RO_0002575: causally upstream of
database_cross_reference: RO:0002412
has OBO namespace: external
id: immediately_causally_upstream_of
shorthand: immediately_causally_upstream_of

causally upstream of or within
type: ObjectProperty
sub property of: causal relation between processes
inverse of: causally downstream of or within
type: TransitiveProperty
definition: p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.
editor note: We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2
term editor: Chris Mungall
alternative term: influences (processual)
database_cross_reference: RO:0002418
has OBO namespace: external
has_related_synonym: affects
id: causally_upstream_of_or_within
shorthand: causally_upstream_of_or_within

causally downstream of or within
type: ObjectProperty
sub property of: causal relation between processes
type: TransitiveProperty
definition: inverse of causally upstream of or within
term editor: Chris Mungall
definition source: causal-relations
database_cross_reference: RO:0002427
has OBO namespace: external
id: causally_downstream_of_or_within
in_subset: RO_0002259
shorthand: causally_downstream_of_or_within

involved in regulation of
type: ObjectProperty
sub property of: acts upstream of
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' regulates some p
term editor: Chris Mungall

involved in positive regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: positively regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' positively regulates some p
term editor: Chris Mungall
RO_0004049: involved in regulation of

involved in negative regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: negatively regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' negatively regulates some p
term editor: Chris Mungall
RO_0004050: involved in regulation of

involved in or involved in regulation of
type: ObjectProperty
sub property of: acts upstream of or within
sub property of: functionally related to
sub property of: causal agent in process
definition: c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p
editor note: OWL does not allow defining object properties via a Union
term editor: Chris Mungall
alternative term: involved in or reguates

is active in
type: ObjectProperty
sub property of: overlaps
sub property of: functionally related to
property chain axiom: enables
property chain axiom: occurs in
example of usage: A protein that enables activity in a cytosol.
definition: c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
term editor: Chris Mungall
alternative term: executes activity in
has_exact_synonym: enables activity in

Axiom
annotated source: is active in
annotated property: propertyChainAxiom
annotated target: enables
annotated target: occurs in
is a defining property chain axiom: true

Axiom
annotated source: is active in
annotated property: definition
annotated target: c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
database_cross_reference: GOC:cjm
database_cross_reference: GOC:dos

contributes to morphology of
type: ObjectProperty
sub property of: overlaps
definition: p contributes to morphology of w if and only if a change in the morphology of p entails a change in the morphology of w. Examples: every skull contributes to morphology of the head which it is a part of. Counter-example: nuclei do not generally contribute to the morphology of the cell they are part of, as they are buffered by cytoplasm.
term editor: Chris Mungall
database_cross_reference: RO:0002433
has OBO namespace: uberon
id: contributes_to_morphology_of
shorthand: contributes_to_morphology_of

interacts with
type: ObjectProperty
type: SymmetricProperty
domain: material entity
range: material entity
definition: A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
editor note: Considering relabeling as 'pairwise interacts with'
editor note: This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.
term editor: Chris Mungall
IAO_0000232: Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
has_exact_synonym: in pairwise interaction with
in_subset: ro-eco

molecularly interacts with
type: ObjectProperty
sub property of: interacts with
type: SymmetricProperty
definition: An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.
term editor: Chris Mungall
alternative term: binds
alternative term: molecularly binds with

biotically interacts with
type: ObjectProperty
sub property of: ecologically related to
sub property of: interacts with
type: SymmetricProperty
domain: material entity
range: material entity
definition: An interaction relationship in which at least one of the partners is an organism and the other is either an organism or an abiotic entity with which the organism interacts.
term editor: Chris Mungall
alternative term: interacts with on organism level
in_subset: ro-eco

trophically interacts with
type: ObjectProperty
sub property of: participates in a biotic-biotic interaction with
definition: An interaction relationship in which the partners are related via a feeding relationship.
term editor: Chris Mungall
in_subset: ro-eco

preys on
type: ObjectProperty
sub property of: trophically interacts with
inverse of: preyed upon by
example of usage: A wasp killing a Monarch larva in order to feed to offspring [http://www.inaturalist.org/observations/2942824]
example of usage: Baleen whale preys on krill
definition: An interaction relationship involving a predation process, where the subject kills the target in order to eat it or to feed to siblings, offspring or group members
term editor: Chris Mungall
term editor: Jorrit Poelen
term editor: Katja Shulz
alternative term: is subject of predation interaction with
alternative term: preys upon
in_subset: ro-eco

symbiotically interacts with
type: ObjectProperty
sub property of: participates in a biotic-biotic interaction with
type: SymmetricProperty
definition: A biotic interaction in which the two organisms live together in more or less intimate association.
term editor: Chris Mungall
definition source: http://www.ncbi.nlm.nih.gov/pubmed/19278549
IAO_0000232: We follow GO and PAMGO in using 'symbiosis' as the broad term encompassing mutualism through parasitism
in_subset: ro-eco

interacts with via parasite-host interaction
type: ObjectProperty
sub property of: symbiotically interacts with
definition: An interaction relationship between two organisms living together in more or less intimate association in a relationship in which association is disadvantageous or destructive to one of the organisms (GO).
term editor: Chris Mungall
definition source: http://www.ncbi.nlm.nih.gov/pubmed/19278549
IAO_0000232: This relation groups a pair of inverse relations, parasite of and parasitized by
in_subset: ro-eco

parasite of
type: ObjectProperty
sub property of: interacts with via parasite-host interaction
sub property of: has host
inverse of: parasitized by
example of usage: Pediculus humanus capitis parasite of human
term editor: Chris Mungall
alternative term: parasitizes
has_exact_synonym: direct parasite of
in_subset: ro-eco

parasitized by
type: ObjectProperty
sub property of: interacts with via parasite-host interaction
sub property of: host of
term editor: Chris Mungall
alternative term: has parasite
alternative term: parasitised by
has_exact_synonym: directly parasitized by
in_subset: ro-eco

participates in a abiotic-biotic interaction with
type: ObjectProperty
sub property of: biotically interacts with
example of usage: Porifiera attaches to substrate
definition: A biotic interaction relationship in which one partner is an organism and the other partner is inorganic. For example, the relationship between a sponge and the substrate to which is it anchored.
term editor: Chris Mungall
has_related_synonym: semibiotically interacts with
in_subset: ro-eco

phosphorylates
type: ObjectProperty
sub property of: molecularly interacts with
editor note: Axiomatization to GO to be added later
term editor: Chris Mungall
alternative term: An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.

directly regulates activity of
type: ObjectProperty
sub property of: molecularly interacts with
sub property of: regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: regulates
property chain axiom: enabled by
definition: The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.
term editor: Chris Mungall
term editor: Vasundra Touré
has_exact_synonym: molecularly controls

directly negatively regulates activity of
type: ObjectProperty
sub property of: directly regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: directly negatively regulates
property chain axiom: enabled by
definition: The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
term editor: Chris Mungall
term editor: Vasundra Touré
alternative term: directly inhibits
has_exact_synonym: molecularly decreases activity of

directly positively regulates activity of
type: ObjectProperty
sub property of: directly regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: directly positively regulates
property chain axiom: enabled by
definition: The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
term editor: Chris Mungall
term editor: Vasundra Touré
alternative term: directly activates
has_exact_synonym: molecularly increases activity of

host of
type: ObjectProperty
sub property of: symbiotically interacts with
term editor: Chris Mungall
IAO_0000232: The term host is usually used for the larger (macro) of the two members of a symbiosis (GO)
in_subset: ro-eco

has host
type: ObjectProperty
sub property of: symbiotically interacts with
definition: X 'has host' y if and only if: x is an organism, y is an organism, and x can live on the surface of or within the body of y
term editor: Chris Mungall
in_subset: ro-eco

acquires nutrients from
type: ObjectProperty
sub property of: trophically interacts with
inverse of: provides nutrients for
term editor: Chris Mungall
IAO_0000232: Intended to be used when the target of the relation is not itself consumed, and does not have integral parts consumed, but provided nutrients in some other fashion.
in_subset: ro-eco

preyed upon by
type: ObjectProperty
sub property of: trophically interacts with
definition: inverse of preys on
term editor: Chris Mungall
alternative term: has predator
alternative term: is target of predation interaction with
in_subset: RO_0002259
in_subset: ro-eco

helper property (not for use in curation)
type: ObjectProperty
term editor: Chris Mungall
IAO_0000232: This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.

provides nutrients for
type: ObjectProperty
sub property of: trophically interacts with
term editor: Chris Mungall
in_subset: ro-eco

eats
type: ObjectProperty
sub property of: trophically interacts with
term editor: Chris Mungall
alternative term: is subject of eating interaction with
in_subset: ro-eco

is eaten by
type: ObjectProperty
sub property of: trophically interacts with
term editor: Chris Mungall
alternative term: eaten by
alternative term: is target of eating interaction with
in_subset: ro-eco

composed primarily of
type: ObjectProperty
sub property of: has part
domain: material entity
range: material entity
example of usage: 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'
definition: x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.
definition: x composed_primarily_of y iff: more than half of the mass of x is made from parts of y
definition: x composed_primarily_of y iff: more than half of the mass of x is made from parts of y.
term editor: Chris Mungall
definition source: http://www.ncbi.nlm.nih.gov/pubmed/22293552
temporal interpretation: RO_0001901
database_cross_reference: RO:0002473
has OBO namespace: uberon
id: RO:0002473
id: composed_primarily_of
in_subset: ro-eco
shorthand: composed_primarily_of

has part that occurs in
type: ObjectProperty
domain: occurrent
range: independent continuant
property chain axiom: has part
property chain axiom: occurs in
definition: p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.
term editor: Chris Mungall
in_subset: ro-eco

Axiom
annotated source: has part that occurs in
annotated property: propertyChainAxiom
annotated target: has part
annotated target: occurs in
is a defining property chain axiom: true

is kinase activity
type: ObjectProperty
sub property of: molecular interaction relation helper property
term editor: Chris Mungall

relation between physical entity and a process or stage
type: ObjectProperty
domain: independent continuant
range: occurrent
term editor: Chris Mungall
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, typically connecting an anatomical entity to a biological process or developmental stage.

existence starts during
type: ObjectProperty
sub property of: existence overlaps
sub property of: existence starts during or after
property chain axiom: part of
definition: Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s.
definition: x existence starts during y if and only if the time point at which x starts is after or equivalent to the time point at which y starts and before or equivalent to the time point at which y ends. Formally: x existence starts during y iff α(x) >= α(y) & α(x) <= ω(y).
term editor: Chris Mungall
database_cross_reference: RO:0002488
has_exact_synonym: begins_to_exist_during
has OBO namespace: uberon
id: RO:0002488
id: existence_starts_during
shorthand: existence_starts_during

Axiom
annotated source: existence starts during
annotated property: definition
annotated target: Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: existence starts during
annotated property: definition
annotated target: Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

existence starts with
type: ObjectProperty
sub property of: existence starts during
definition: Relation between continuant and occurrent, such that c comes into existence at the start of p.
definition: x starts ends with y if and only if the time point at which x starts is equivalent to the time point at which y starts. Formally: x existence starts with y iff α(x) = α(y).
term editor: Chris Mungall
database_cross_reference: RO:0002489
has OBO namespace: uberon
id: existence_starts_with
shorthand: existence_starts_with

Axiom
annotated source: existence starts with
annotated property: definition
annotated target: Relation between continuant and occurrent, such that c comes into existence at the start of p.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: existence starts with
annotated property: definition
annotated target: Relation between continuant and occurrent, such that c comes into existence at the start of p.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

existence overlaps
type: ObjectProperty
sub property of: relation between physical entity and a process or stage
definition: x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))
term editor: Chris Mungall
comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.

existence starts and ends during
type: ObjectProperty
sub property of: existence starts during
sub property of: existence ends during
definition: x exists during y if and only if: 1) the time point at which x begins to exist is after or equal to the time point at which y begins and 2) the time point at which x ceases to exist is before or equal to the point at which y ends. Formally: x existence starts and ends during y iff α(x) >= α(y) & α(x) <= ω(y) & ω(x) <= ω(y) & ω(x) >= α(y)
term editor: Chris Mungall
database_cross_reference: RO:0002491
has_exact_synonym: exists during
has OBO namespace: uberon
id: existence_starts_and_ends_during
shorthand: existence_starts_and_ends_during
comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.

existence ends during
type: ObjectProperty
sub property of: existence overlaps
sub property of: existence ends during or before
property chain axiom: part of
definition: Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely.
definition: x existence ends during y if and only if the time point at which x ends is before or equivalent to the time point at which y ends and after or equivalent to the point at which y starts. Formally: x existence ends during y iff ω(x) <= ω(y) and ω(x) >= α(y).
term editor: Chris Mungall
database_cross_reference: RO:0002492
has_exact_synonym: ceases_to_exist_during
has OBO namespace: uberon
id: RO:0002492
id: existence_ends_during
shorthand: existence_ends_during
comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.

Axiom
annotated source: existence ends during
annotated property: definition
annotated target: Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: existence ends during
annotated property: definition
annotated target: Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

existence ends with
type: ObjectProperty
sub property of: existence ends during
definition: Relation between continuant and occurrent, such that c ceases to exist at the end of p.
definition: x existence ends with y if and only if the time point at which x ends is equivalent to the time point at which y ends. Formally: x existence ends with y iff ω(x) = ω(y).
term editor: Chris Mungall
database_cross_reference: RO:0002493
has OBO namespace: uberon
id: existence_ends_with
shorthand: existence_ends_with
comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.

Axiom
annotated source: existence ends with
annotated property: definition
annotated target: Relation between continuant and occurrent, such that c ceases to exist at the end of p.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: existence ends with
annotated property: definition
annotated target: Relation between continuant and occurrent, such that c ceases to exist at the end of p.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

transformation of
type: ObjectProperty
sub property of: develops_from
type: TransitiveProperty
definition: x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships
term editor: Chris Mungall
database_cross_reference: RO:0002494
has_exact_synonym: transforms from
has OBO namespace: uberon
id: transformation_of
shorthand: transformation_of

Axiom
annotated source: transformation of
annotated property: has_exact_synonym
annotated target: transforms from
database_cross_reference: SIO:000657

immediate transformation of
type: ObjectProperty
sub property of: directly_develops_from
sub property of: transformation of
definition: x immediate transformation of y iff x immediately succeeds y temporally at a time boundary t, and all of the matter present in x at t is present in y at t, and all the matter in y at t is present in x at t
term editor: Chris Mungall
RO_0002575: transformation of
database_cross_reference: RO:0002495
has_exact_synonym: direct_transformation_of
has_exact_synonym: immediately transforms from
has OBO namespace: uberon
id: immediate_transformation_of
shorthand: immediate_transformation_of

Axiom
annotated source: immediate transformation of
annotated property: has_exact_synonym
annotated target: direct_transformation_of
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: immediate transformation of
annotated property: has_exact_synonym
annotated target: direct_transformation_of
database_cross_reference: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: immediate transformation of
annotated property: has_exact_synonym
annotated target: immediately transforms from
database_cross_reference: SIO:000658

existence starts during or after
type: ObjectProperty
sub property of: relation between physical entity and a process or stage
property chain axiom: part of
property chain axiom: developmentally preceded by
property chain axiom: preceded by
property chain axiom: simultaneous_with
definition: x existence starts during or after y if and only if the time point at which x starts is after or equivalent to the time point at which y starts. Formally: x existence starts during or after y iff α (x) >= α (y).
term editor: Chris Mungall
database_cross_reference: RO:0002496
has OBO namespace: uberon
id: existence_starts_during_or_after
shorthand: existence_starts_during_or_after
comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.

existence ends during or before
type: ObjectProperty
sub property of: relation between physical entity and a process or stage
property chain axiom: part of
property chain axiom: developmentally succeeded by
property chain axiom: precedes
property chain axiom: simultaneous_with
definition: x existence ends during or before y if and only if the time point at which x ends is before or equivalent to the time point at which y ends.
term editor: Chris Mungall
database_cross_reference: RO:0002497
has OBO namespace: uberon
id: existence_ends_during_or_before
shorthand: existence_ends_during_or_before
comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.

causal agent in process
type: ObjectProperty
sub property of: causal relation between material entity and a process
inverse of: process has causal agent
definition: A relationship between a material entity and a process where the material entity has some causal role that influences the process
definition source: causal-relations
database_cross_reference: RO:0002500
shorthand: causal_agent_in_process

causal relation between processes
type: ObjectProperty
sub property of: causally related to
domain: occurrent
range: occurrent
definition: p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.
term editor: Chris Mungall
definition source: causal-relations
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
database_cross_reference: RO:0002501
shorthand: causal_relation_between_processes

depends on
type: ObjectProperty
term editor: Chris Mungall

causal relation between entities
type: ObjectProperty
sub property of: causally related to
domain: continuant
range: continuant
editor note: The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch
term editor: Chris Mungall
definition source: causal-relations
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

determined by
type: ObjectProperty
sub property of: part of
sub property of: determined by part of
sub property of: causally influenced by
inverse of: determines
domain: RO_0002577
range: material entity
example of usage: A coral reef environment is determined by a particular coral reef
definition: s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s.
editor note: The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future
term editor: Chris Mungall
definition source: http://www.ncbi.nlm.nih.gov/pubmed/24330602
IAO_0000589: determined by (system to material entity)
creator: Chris Mungall
creator: Pier Buttigieg
in_subset: ro-eco

determines
type: ObjectProperty
sub property of: causally influences
definition: inverse of determined by
term editor: Chris Mungall
IAO_0000589: determines (material entity to system)
in_subset: RO_0002259
in_subset: ro-eco

determined by part of
type: ObjectProperty
sub property of: overlaps
sub property of: causal relation between entities
domain: RO_0002577
range: material entity
property chain axiom: determined by
property chain axiom: part of
definition: s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w.
term editor: Chris Mungall
in_subset: ro-eco

Axiom
annotated source: determined by part of
annotated property: propertyChainAxiom
annotated target: determined by
annotated target: part of
RO_0002582: true

has skeleton
type: ObjectProperty
sub property of: has part
inverse of: skeleton of
type: AsymmetricProperty
type: IrreflexiveProperty
domain: connected anatomical structure
domain: UBERON_0000475
range: material anatomical entity
range: UBERON_0010912
example of usage: Forelimb SubClassOf has_skeleton some 'Forelimb skeleton'
definition: A relation between a segment or subdivision of an organism and the maximal subdivision of material entities that provides structural support for that segment or subdivision.
definition: A relation between a subdivision of an organism and the single subdivision of skeleton that provides structural support for that subdivision.
term editor: Chris Mungall
alternative term: has supporting framework
IAO_0000232: The skeleton of a structure may be a true skeleton (for example, the bony skeleton of a hand) or any kind of support framework (the hydrostatic skeleton of a sea star, the exoskeleton of an insect, the cytoskeleton of a cell).
database_cross_reference: RO:0002551
has OBO namespace: uberon
has_related_synonym: has sekeletal support
has_related_synonym: has supporting framework
id: has_skeleton
shorthand: has_skeleton

Axiom
annotated source: has skeleton
annotated property: range
annotated target: material anatomical entity
editor note: This should be to a more restricted class, but not the Uberon class may be too restricted since it is a composition-based definition of skeleton rather than functional.

Axiom
annotated source: has skeleton
annotated property: definition
annotated target: A relation between a subdivision of an organism and the single subdivision of skeleton that provides structural support for that subdivision.
database_cross_reference: http://orcid.org/0000-0002-6601-2165

Axiom
annotated source: has skeleton
annotated property: definition
annotated target: A relation between a subdivision of an organism and the single subdivision of skeleton that provides structural support for that subdivision.
database_cross_reference: http://orcid.org/0000-0002-6601-2165

results in ending of
type: ObjectProperty
sub property of: results in developmental progression of
sub property of: results in changes to anatomical or cellular structure
definition: p results in the end of s if p results in a change of state in s whereby s either ceases to exist, or s becomes functionally impaired or s has its fate committed such that it is put on a path to be degraded.
term editor: Chris Mungall

hyperparasite of
type: ObjectProperty
sub property of: has host
inverse of: hyperparasitized by
property chain axiom: parasite of
definition: x is a hyperparasite of y iff x is a parasite of a parasite of the target organism y
editor note: Note that parasite-of is a diret relationship, so hyperparasite-of is not considered a sub-relation, even though hyperparasitism can be considered a form of parasitism
term editor: Chris Mungall
definition source: http://eol.org/schema/terms/hyperparasitoidOf
definition source: https://en.wikipedia.org/wiki/Hyperparasite
has_narrow_synonym: hyperparasitoid of
has_related_synonym: epiparasite of
in_subset: ro-eco

hyperparasitized by
type: ObjectProperty
sub property of: host of
property chain axiom: parasitized by
definition: inverse of hyperparasite of
term editor: Chris Mungall
has_related_synonym: has epiparasite
has_related_synonym: has hyperparasite
has_related_synonym: hyperparasitoidized by
in_subset: RO_0002259
in_subset: ro-eco

causally influenced by
type: ObjectProperty
sub property of: causal relation between entities
inverse of: causally influences
term editor: Chris Mungall
definition source: causal-relations
IAO_0000589: causally influenced by (entity-centric)

interaction relation helper property
type: ObjectProperty
sub property of: helper property (not for use in curation)
term editor: Chris Mungall

molecular interaction relation helper property
type: ObjectProperty
sub property of: interaction relation helper property
term editor: Chris Mungall

causally influences
type: ObjectProperty
sub property of: causal relation between entities
domain: continuant
range: continuant
property chain axiom: enables
property chain axiom: causally upstream of
property chain axiom: has input
property chain axiom: enabled by
definition: The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size).
term editor: Chris Mungall
term editor: Vasundra Touré
definition source: causal-relations
IAO_0000589: causally influences (entity-centric)

biomechanically related to
type: ObjectProperty
sub property of: functionally related to
domain: connected anatomical structure
range: connected anatomical structure
definition: A relation that holds between elements of a musculoskeletal system or its analogs.
term editor: Chris Mungall
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the biomechanical processes.

has branching part
type: ObjectProperty
sub property of: has part
sub property of: in branching relationship with
type: TransitiveProperty
definition: inverse of branching part of
term editor: Chris Mungall
database_cross_reference: RO:0002569
has OBO namespace: uberon
id: has_branching_part
in_subset: RO_0002259
in_subset: ro-eco
shorthand: has_branching_part

lumen of
type: ObjectProperty
sub property of: part of
range: material entity
definition: x lumen_of y iff x is the space or substance that is part of y and does not cross any of the inner membranes or boundaries of y that is maximal with respect to the volume of the convex hull.
term editor: Chris Mungall
definition source: GOC:cjm
database_cross_reference: RO:0002571
has OBO namespace: uberon
id: lumen_of
in_subset: ro-eco
shorthand: lumen_of

luminal space of
type: ObjectProperty
sub property of: part of
sub property of: lumen of
domain: immaterial entity
definition: s is luminal space of x iff s is lumen_of x and s is an immaterial entity
term editor: Chris Mungall
database_cross_reference: RO:0002572
has OBO namespace: uberon
id: luminal_space_of
in_subset: ro-eco
shorthand: luminal_space_of

participates in a biotic-biotic interaction with
type: ObjectProperty
sub property of: biotically interacts with
domain: organism or virus or viroid
range: organism or virus or viroid
term editor: Chris Mungall
in_subset: ro-eco

skeleton of
type: ObjectProperty
sub property of: part of
domain: connected anatomical structure
range: connected anatomical structure
definition: inverse of has skeleton
term editor: Chris Mungall
database_cross_reference: RO:0002576
has OBO namespace: uberon
id: skeleton_of
in_subset: RO_0002259
shorthand: skeleton_of

directly regulates
type: ObjectProperty
sub property of: regulates
sub property of: immediately causally upstream of
definition: Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
term editor: Chris Mungall
definition source: causal-relations
IAO_0000589: directly regulates (processual)
RO_0002575: regulates
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

has part structure that is capable of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal relation between material entity and a process
property chain axiom: has part
property chain axiom: capable of
example of usage: gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'
definition: s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p
term editor: Chris Mungall

results in breakdown of
type: ObjectProperty
sub property of: has input
definition: p results in breakdown of c if and only if the execution of p leads to c no longer being present at the end of p

results in assembly of
type: ObjectProperty
sub property of: results in formation of
sub property of: results in organization of
database_cross_reference: RO:0002588
has OBO namespace: external
id: results_in_assembly_of
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: results_in_assembly_of
label: results_in_assembly_of

results in disassembly of
type: ObjectProperty
sub property of: results in breakdown of
sub property of: results in organization of
database_cross_reference: RO:0002590
has OBO namespace: external
id: results_in_disassembly_of
shorthand: results_in_disassembly_of
label: results_in_disassembly_of

results in organization of
type: ObjectProperty
sub property of: has participant
sub property of: results in changes to anatomical or cellular structure
definition: p results in organization of c iff p results in the assembly, arrangement of constituent parts, or disassembly of c
database_cross_reference: RO:0002592
has OBO namespace: external
id: results_in_organization_of
shorthand: results_in_organization_of

causal relation between material entity and a process
type: ObjectProperty
sub property of: causally related to
domain: material entity
range: process
definition: A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
editor note: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
term editor: Chris Mungall
definition source: causal-relations
database_cross_reference: RO:0002595
shorthand: causal_relation_between_material_entity_and_a_process

capable of regulating
type: ObjectProperty
sub property of: causal agent in process
property chain axiom: capable of
property chain axiom: regulates
example of usage: pyrethroid -> growth
definition: Holds between c and p if and only if c is capable of some activity a, and a regulates p.
definition source: causal-relations

capable of negatively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable of
property chain axiom: negatively regulates
definition: Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.
definition source: causal-relations

capable of positively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable of
property chain axiom: positively regulates
example of usage: renin -> arteriolar smooth muscle contraction
definition: Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.
definition source: causal-relations

process has causal agent
type: ObjectProperty
sub property of: causally related to
definition: Inverse of 'causal agent in process'
definition source: causal-relations
database_cross_reference: RO:0002608
has OBO namespace: external
id: process_has_causal_agent
shorthand: process_has_causal_agent

directly positively regulates
type: ObjectProperty
sub property of: positively regulates
sub property of: directly regulates
definition: Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.
definition source: causal-relations
IAO_0000589: directly positively regulates (process to process)
RO_0004049: directly regulates
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

directly negatively regulates
type: ObjectProperty
sub property of: negatively regulates
sub property of: directly regulates
definition: Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.
definition source: causal-relations
IAO_0000589: directly negatively regulates (process to process)
RO_0004050: directly regulates
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

endoparasite of
type: ObjectProperty
sub property of: parasite of
inverse of: has endoparasite
definition source: Types
definition source: A sub-relation of parasite-of in which the parasite lives inside the host, beneath the integumental system
has_related_synonym: lives inside of

has endoparasite
type: ObjectProperty
sub property of: parasitized by

produces
type: ObjectProperty
inverse of: produced by
domain: material entity
range: material entity
property chain axiom:
  inverse of: occurs in
property chain axiom: has output
has curation status: IAO_0000125
definition: a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.
term editor: Melissa Haendel
database_cross_reference: RO:0003000
has OBO namespace: external
has OBO namespace: uberon
id: produces
in_subset: ro-eco
shorthand: produces
comment: Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.

produced by
type: ObjectProperty
domain: material entity
range: material entity
has curation status: IAO_0000125
definition: a produced_by b iff some process that occurs_in b has_output a.
term editor: Melissa Haendel
database_cross_reference: RO:0003001
has OBO namespace: external
has OBO namespace: uberon
id: produced_by
in_subset: ro-eco
shorthand: produced_by
label: produced_by

has primary input or output
type: ObjectProperty
sub property of: has participant
definition: p 'has primary input ot output' c iff either (a) p 'has primary input' c or (b) p 'has primary output' c.
created by: cjm
creation date: 2018-12-13T11:26:17Z
database_cross_reference: RO:0004007
has OBO namespace: external
id: has_primary_input_or_output
in_subset: valid for go ontology
shorthand: has_primary_input_or_output

has primary output
type: ObjectProperty
sub property of: has output
sub property of: has primary input or output
definition: p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c.
created by: cjm
creation date: 2018-12-13T11:26:32Z
database_cross_reference: RO:0004008
has OBO namespace: external
id: has_primary_output
in_subset: valid for go ontology
shorthand: has_primary_output

Axiom
annotated source: has primary output
annotated property: definition
annotated target: p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c.
database_cross_reference: GOC:cjm
database_cross_reference: GOC:dph
database_cross_reference: GOC:kva
database_cross_reference: GOC:pt
comment: PMID:27812932

realized in response to stimulus
type: ObjectProperty
sub property of: causally related to
domain: realizable entity
range: material entity
property chain axiom: realized in response to
property chain axiom: has input
definition: A relationship between a realizable entity R (e.g. function or disposition) and a material entity M where R is realized in response to a process that has an input stimulus of M.
created by: cjm
creation date: 2017-12-26T19:45:49Z

enables subfunction
type: ObjectProperty
sub property of: functionally related to
property chain axiom: enables
property chain axiom: has part
definition: Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.
created by: cjm
creation date: 2018-01-25T23:20:13Z

acts upstream of or within, positive effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, positive effect
RO_0004049: acts upstream of or within
created by: cjm
creation date: 2018-01-26T23:49:30Z
in_subset: valid for go gp2term

acts upstream of or within, negative effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, negative effect
RO_0004050: acts upstream of or within
created by: cjm
creation date: 2018-01-26T23:49:51Z
in_subset: valid for go gp2term

acts upstream of, positive effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, positive effect
property chain axiom: enables
property chain axiom: causally upstream of, positive effect
definition: c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
RO_0004049: acts upstream of
created by: cjm
creation date: 2018-01-26T23:53:14Z
in_subset: valid for go gp2term

acts upstream of, negative effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, negative effect
property chain axiom: enables
property chain axiom: causally upstream of, negative effect
definition: c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
RO_0004050: acts upstream of
created by: cjm
creation date: 2018-01-26T23:53:22Z
in_subset: valid for go gp2term

causally upstream of or within, negative effect
type: ObjectProperty
sub property of: causally upstream of or within
RO_0004050: causally upstream of or within
created by: cjm
creation date: 2018-03-13T23:55:05Z

causally upstream of or within, positive effect
type: ObjectProperty
sub property of: causally upstream of or within
RO_0004049: causally upstream of or within
created by: cjm
creation date: 2018-03-13T23:55:19Z

realized in response to
type: ObjectProperty
sub property of: causally related to
domain: realizable entity
range: process
property chain axiom: realized in
property chain axiom: causally downstream of
example of usage: A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions.
example of usage: An inflammatory disease that is realized in response to an inflammatory process occurring in the gut (which is itself the realization of a process realized in response to harmful stimuli in the mucosal lining of th gut)
example of usage: Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph.
definition: r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r.
contributor: Austin Meier
contributor: Chris Mungall
contributor: David Osumi-Sutherland
contributor: Marie Angelique Laporte
has_exact_synonym: triggered by process

Axiom
annotated source: realized in response to
annotated property: has_exact_synonym
annotated target: triggered by process
database_cross_reference: RO:cjm

regulates activity of
type: ObjectProperty
sub property of: causally influences
domain: material entity
range: material entity
definition: The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B.
term editor: Vasundra Touré

acts on population of
type: ObjectProperty
sub property of: has participant
definition: p acts on population of c iff c' is a collection, has members of type c, and p has participant c
created by: pg
creation date: 2020-06-08T17:21:33Z
database_cross_reference: RO:0012003
has OBO namespace: external
id: acts_on_population_of
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: acts_on_population_of

results in fusion of
type: ObjectProperty
sub property of: results in organization of
created by: pg
creation date: 2021-02-26T07:28:29Z
database_cross_reference: RO:0012008
has OBO namespace: external
id: results_in_fusion_of
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
shorthand: results_in_fusion_of

different in magnitude relative to
type: ObjectProperty
domain: PATO_0000001
range: PATO_0000001
definition: q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.

Axiom
annotated source: different in magnitude relative to
annotated property: definition
annotated target: q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

increased in magnitude relative to
type: ObjectProperty
sub property of: different in magnitude relative to
domain: PATO_0000001
range: PATO_0000001
definition: q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
comment: This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'.

Axiom
annotated source: increased in magnitude relative to
annotated property: definition
annotated target: q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

has cross section
type: ObjectProperty
definition: s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.
comment: Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round.

Axiom
annotated source: has cross section
annotated property: definition
annotated target: s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.
database_cross_reference: https://orcid.org/0000-0002-6601-2165

utilizes
type: ObjectProperty
property chain axiom: capable of
property chain axiom: has input
example of usage: A diagnostic testing device utilizes a specimen.
definition: X utilizes Y means X and Y are material entities, and X is capable of some process P that has input Y.
term editor: Asiyah Lin
term editor: https://orcid.org/0000-0001-9625-1899 Bill Duncan
IAO_0000232: A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input.
IAO_0000232: See github ticket https://github.com/oborel/obo-relations/issues/497
creation date: 2021-11-08

regulates characteristic
type: ObjectProperty
sub property of: causally related to
domain: process
range: PATO_0000001
property chain axiom: regulates
definition: A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.
contributor: https://orcid.org/0000-0002-8688-6599

positively regulates characteristic
type: ObjectProperty
sub property of: regulates characteristic
property chain axiom: positively regulates
definition: A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C.
contributor: https://orcid.org/0000-0002-8688-6599

negatively regulates characteristic
type: ObjectProperty
sub property of: regulates characteristic
property chain axiom: negatively regulates
property chain axiom: positively regulates characteristic
property chain axiom: positively regulates
definition: A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C.
contributor: https://orcid.org/0000-0002-8688-6599

results in changes to anatomical or cellular structure
type: ObjectProperty
sub property of: has participant
definition: p has anatomical participant c iff p has participant c, and c is an anatomical entity
created by: cjm
creation date: 2018-09-26T01:08:58Z

has functional parent
type: ObjectProperty
has OBO namespace: chebi_ontology
id: has_functional_parent
is cyclic: false
is transitive: false

is conjugate acid of
type: ObjectProperty
inverse of: is conjugate base of
has OBO namespace: chebi_ontology
id: is_conjugate_acid_of
is cyclic: true
is transitive: false

is conjugate base of
type: ObjectProperty
has OBO namespace: chebi_ontology
id: is_conjugate_base_of
is cyclic: true
is transitive: false

is substituent group from
type: ObjectProperty
has OBO namespace: chebi_ontology
id: is_substituent_group_from
is cyclic: false
is transitive: false

lacks_part
type: ObjectProperty
IAO_0000424: http://purl.obolibrary.org/obo/BFO_0000051 exactly 0 ?Y

lacks_plasma_membrane_part
type: ObjectProperty
IAO_0000424: http://purl.obolibrary.org/obo/BFO_0000051 exactly 0 (http://purl.obolibrary.org/obo/GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)

has_participant
type: ObjectProperty

has_gene_template
type: ObjectProperty
has OBO namespace: protein
id: has_gene_template
is transitive: false

anteriorly connected to
type: ObjectProperty
sub property of: posterior to
sub property of: connected to
sub property of: transitively anteriorly connected to
definition: x anteriorly_connected_to y iff the anterior part of x is connected to y. i.e. x connected_to y and x posterior_to y.
database_cross_reference: anteriorly_connected_to
has OBO namespace: uberon
id: anteriorly_connected_to
shorthand: anteriorly_connected_to

Axiom
annotated source: anteriorly connected to
annotated property: definition
annotated target: x anteriorly_connected_to y iff the anterior part of x is connected to y. i.e. x connected_to y and x posterior_to y.
database_cross_reference: Connectivity-Design-Pattern

Axiom
annotated source: anteriorly connected to
annotated property: definition
annotated target: x anteriorly_connected_to y iff the anterior part of x is connected to y. i.e. x connected_to y and x posterior_to y.
database_cross_reference: http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern

channel for
type: ObjectProperty
domain: UBERON_0004111
range: UBERON_0000463
has broad synonym: carries
database_cross_reference: channel_for
has OBO namespace: uberon
id: channel_for
shorthand: channel_for

channels_from
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: channels_from
has OBO namespace: uberon
id: channels_from
shorthand: channels_from

channels_into
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: channels_into
has OBO namespace: uberon
id: channels_into
shorthand: channels_into

conduit for
type: ObjectProperty
definition: x is a conduit for y iff y passes through the lumen of x.
database_cross_reference: conduit_for
has OBO namespace: uberon
id: conduit_for
shorthand: conduit_for

distally connected to
type: ObjectProperty
sub property of: proximal to
sub property of: connected to
sub property of: transitively distally connected to
inverse of: proximally connected to
definition: x distally_connected_to y iff the distal part of x is connected to y. i.e. x connected_to y and x proximal_to y.
database_cross_reference: distally_connected_to
has OBO namespace: uberon
id: distally_connected_to
shorthand: distally_connected_to

Axiom
annotated source: distally connected to
annotated property: definition
annotated target: x distally_connected_to y iff the distal part of x is connected to y. i.e. x connected_to y and x proximal_to y.
database_cross_reference: Connectivity-Design-Pattern

Axiom
annotated source: distally connected to
annotated property: definition
annotated target: x distally_connected_to y iff the distal part of x is connected to y. i.e. x connected_to y and x proximal_to y.
database_cross_reference: http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern

extends_fibers_into
type: ObjectProperty
sub property of: connected to
type: SymmetricProperty
has OBO namespace: uberon
id: extends_fibers_into

filtered through
type: ObjectProperty
definition: Relationship between a fluid and a material entity, where the fluid is the output of a realization of a filtration role that inheres in the material entity.
database_cross_reference: filtered_through
has OBO namespace: uberon
id: filtered_through
shorthand: filtered_through
comment: Relationship between a fluid and a filtration barrier, where the portion of fluid arises as a transformation of another portion of fluid on the other side of the barrier, with larger particles removed

indirectly_supplies
type: ObjectProperty
type: TransitiveProperty
property chain axiom: has branching part
property chain axiom: supplies
definition: a indirectly_supplies s iff a has a branch and the branch supplies or indirectly supplies s.
editor note: add to RO
has OBO namespace: uberon
id: indirectly_supplies

posteriorly connected to
type: ObjectProperty
sub property of: anterior to
sub property of: connected to
definition: x posteriorly_connected_to y iff the posterior part of x is connected to y. i.e. x connected_to y and x anterior_to y.
database_cross_reference: posteriorly_connected_to
has OBO namespace: uberon
id: posteriorly_connected_to
shorthand: posteriorly_connected_to

Axiom
annotated source: posteriorly connected to
annotated property: definition
annotated target: x posteriorly_connected_to y iff the posterior part of x is connected to y. i.e. x connected_to y and x anterior_to y.
database_cross_reference: Connectivity-Design-Pattern

Axiom
annotated source: posteriorly connected to
annotated property: definition
annotated target: x posteriorly_connected_to y iff the posterior part of x is connected to y. i.e. x connected_to y and x anterior_to y.
database_cross_reference: http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern

protects
type: ObjectProperty
database_cross_reference: protects
has OBO namespace: uberon
id: protects
shorthand: protects

proximally connected to
type: ObjectProperty
sub property of: distal to
sub property of: connected to
sub property of: transitively proximally connected to
definition: x proximally_connected_to y iff the proximal part of x is connected to y. i.e. x connected_to y and x distal_to y.
database_cross_reference: proximally_connected_to
has OBO namespace: uberon
id: proximally_connected_to
shorthand: proximally_connected_to

Axiom
annotated source: proximally connected to
annotated property: definition
annotated target: x proximally_connected_to y iff the proximal part of x is connected to y. i.e. x connected_to y and x distal_to y.
database_cross_reference: Connectivity-Design-Pattern

Axiom
annotated source: proximally connected to
annotated property: definition
annotated target: x proximally_connected_to y iff the proximal part of x is connected to y. i.e. x connected_to y and x distal_to y.
database_cross_reference: http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern

site_of
type: ObjectProperty
definition: c site_of p if c is the bearer of a disposition that is realized by a process that has p as part.
has OBO namespace: uberon
has_related_synonym: capable_of_has_part
id: site_of

subdivision of
type: ObjectProperty
database_cross_reference: subdivision_of
has OBO namespace: uberon
id: subdivision_of
shorthand: subdivision_of
comment: placeholder relation. X = 'subdivision of A' and subdivision_of some B means that X is the mereological sum of A and B

synapsed by
type: ObjectProperty
definition: Relation between an anatomical structure (including cells) and a neuron that chemically synapses to it.
has OBO namespace: uberon
id: synapsed_by

transitively anteriorly connected to
type: ObjectProperty
type: TransitiveProperty
definition: .
database_cross_reference: transitively_anteriorly_connected_to
has OBO namespace: uberon
id: transitively_anteriorly_connected_to
shorthand: transitively_anteriorly_connected_to

Axiom
annotated source: transitively anteriorly connected to
annotated property: definition
annotated target: .
database_cross_reference: Connectivity-Design-Pattern

Axiom
annotated source: transitively anteriorly connected to
annotated property: definition
annotated target: .
database_cross_reference: http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern

transitively_connected to
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: transitively_connected_to
has OBO namespace: uberon
id: transitively_connected_to
shorthand: transitively_connected_to

transitively distally connected to
type: ObjectProperty
type: TransitiveProperty
definition: .
database_cross_reference: transitively_distally_connected_to
has OBO namespace: uberon
id: transitively_distally_connected_to
shorthand: transitively_distally_connected_to

Axiom
annotated source: transitively distally connected to
annotated property: definition
annotated target: .
database_cross_reference: http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern

transitively proximally connected to
type: ObjectProperty
type: TransitiveProperty
definition: .
database_cross_reference: transitively_proximally_connected_to
has OBO namespace: uberon
id: transitively_proximally_connected_to
shorthand: transitively_proximally_connected_to

Axiom
annotated source: transitively proximally connected to
annotated property: definition
annotated target: .
database_cross_reference: http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern

entity
type: Class
BFO_0000179: entity
BFO_0000180: Entity
example of usage: Julius Caesar
example of usage: Verdi’s Requiem
example of usage: the Second World War
example of usage: your body mass index
editor note: BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
editor note: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
IAO_0000600: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])

Axiom
annotated source: entity
annotated property: editor note
annotated target: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000004
comment: per discussion with Barry Smith

Axiom
annotated source: entity
annotated property: IAO_0000600
annotated target: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/001-001

continuant
type: Class
subclass of: entity
subclass of: Restriction
  on property: part of
  all values from: continuant
disjoint with: occurrent
disjoint with: Restriction
  on property: part of
  some values from: occurrent
BFO_0000179: continuant
BFO_0000180: Continuant
definition: An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
editor note: BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240
editor note: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
IAO_0000600: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
IAO_0000601: if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
IAO_0000601: if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
IAO_0000601: if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
IAO_0000602: (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
IAO_0000602: (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
IAO_0000602: (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
IAO_0000602: (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]

Axiom
annotated source: continuant
annotated property: editor note
annotated target: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000007

Axiom
annotated source: continuant
annotated property: IAO_0000600
annotated target: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/008-002

Axiom
annotated source: continuant
annotated property: IAO_0000601
annotated target: if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/126-001

Axiom
annotated source: continuant
annotated property: IAO_0000601
annotated target: if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/009-002

Axiom
annotated source: continuant
annotated property: IAO_0000601
annotated target: if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/011-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/009-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/126-001

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/008-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/011-002

occurrent
type: Class
subclass of: entity
subclass of: Restriction
  on property: part of
  all values from: occurrent
disjoint with: Restriction
  on property: part of
  some values from: continuant
BFO_0000179: occurrent
BFO_0000180: Occurrent
definition: An entity that has temporal parts and that happens, unfolds or develops through time.
editor note: BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region
editor note: BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.
editor note: Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
editor note: Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
IAO_0000600: An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
IAO_0000601: Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
IAO_0000601: b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
IAO_0000602: (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
IAO_0000602: (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]

Axiom
annotated source: occurrent
annotated property: editor note
annotated target: Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000006
comment: per discussion with Barry Smith

Axiom
annotated source: occurrent
annotated property: editor note
annotated target: Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000012

Axiom
annotated source: occurrent
annotated property: IAO_0000600
annotated target: An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/077-002

Axiom
annotated source: occurrent
annotated property: IAO_0000601
annotated target: Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/108-001

Axiom
annotated source: occurrent
annotated property: IAO_0000601
annotated target: b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/079-001

Axiom
annotated source: occurrent
annotated property: IAO_0000602
annotated target: (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/108-001

Axiom
annotated source: occurrent
annotated property: IAO_0000602
annotated target: (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/079-001

independent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: part of
  all values from: independent continuant
disjoint with: specifically dependent continuant
disjoint with: generically dependent continuant
BFO_0000179: ic
BFO_0000180: IndependentContinuant
example of usage: a chair
example of usage: a heart
example of usage: a leg
example of usage: a molecule
example of usage: a spatial region
example of usage: an atom
example of usage: an orchestra.
example of usage: an organism
example of usage: the bottom right portion of a human torso
example of usage: the interior of your mouth
definition: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
definition: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
IAO_0000601: For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
IAO_0000601: For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
IAO_0000602: (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
IAO_0000602: (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
IAO_0000602: (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]

Axiom
annotated source: independent continuant
annotated property: definition
annotated target: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/017-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000601
annotated target: For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/134-001

Axiom
annotated source: independent continuant
annotated property: IAO_0000601
annotated target: For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/018-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/134-001

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/018-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/017-002

spatial region
type: Class
subclass of: immaterial entity
BFO_0000179: s-region
BFO_0000180: SpatialRegion
editor note: BFO 2 Reference: Spatial regions do not participate in processes.
editor note: Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.
IAO_0000600: A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])
IAO_0000601: All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])
IAO_0000602: (forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]
IAO_0000602: (forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]

Axiom
annotated source: spatial region
annotated property: editor note
annotated target: Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000002
comment: per discussion with Barry Smith

Axiom
annotated source: spatial region
annotated property: IAO_0000600
annotated target: A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/035-001

Axiom
annotated source: spatial region
annotated property: IAO_0000601
annotated target: All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/036-001

Axiom
annotated source: spatial region
annotated property: IAO_0000602
annotated target: (forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/036-001

Axiom
annotated source: spatial region
annotated property: IAO_0000602
annotated target: (forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/035-001

process
type: Class
subclass of: occurrent
BFO_0000179: process
BFO_0000180: Process
example of usage: a process of cell-division, \ a beating of the heart
example of usage: a process of meiosis
example of usage: a process of sleeping
example of usage: the course of a disease
example of usage: the flight of a bird
example of usage: the life of an organism
example of usage: your process of aging.
definition: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
definition: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
editor note: BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)
IAO_0000602: (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]

Axiom
annotated source: process
annotated property: definition
annotated target: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/083-003

Axiom
annotated source: process
annotated property: IAO_0000602
annotated target: (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/083-003

disposition
type: Class
subclass of: realizable entity
disjoint with: role
BFO_0000179: disposition
BFO_0000180: Disposition
example of usage: an atom of element X has the disposition to decay to an atom of element Y
example of usage: certain people have a predisposition to colon cancer
example of usage: children are innately disposed to categorize objects in certain ways.
example of usage: the cell wall is disposed to filter chemicals in endocytosis and exocytosis
editor note: BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.
IAO_0000600: b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
IAO_0000601: If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
IAO_0000602: (forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
IAO_0000602: (forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]

Axiom
annotated source: disposition
annotated property: IAO_0000600
annotated target: b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/062-002

Axiom
annotated source: disposition
annotated property: IAO_0000601
annotated target: If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/063-002

Axiom
annotated source: disposition
annotated property: IAO_0000602
annotated target: (forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/063-002

Axiom
annotated source: disposition
annotated property: IAO_0000602
annotated target: (forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/062-002

realizable entity
type: Class
subclass of: specifically dependent continuant
subclass of: Restriction
  on property: part of
  all values from: realizable entity
disjoint with: quality
BFO_0000179: realizable
BFO_0000180: RealizableEntity
example of usage: the disposition of this piece of metal to conduct electricity.
example of usage: the disposition of your blood to coagulate
example of usage: the function of your reproductive organs
example of usage: the role of being a doctor
example of usage: the role of this boundary to delineate where Utah and Colorado meet
definition: A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
term editor: https://orcid.org/0000-0001-8815-0078
IAO_0000600: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
IAO_0000601: All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
IAO_0000602: (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
IAO_0000602: (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]

Axiom
annotated source: realizable entity
annotated property: IAO_0000600
annotated target: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/058-002

Axiom
annotated source: realizable entity
annotated property: IAO_0000601
annotated target: All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/060-002

Axiom
annotated source: realizable entity
annotated property: IAO_0000602
annotated target: (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/060-002

Axiom
annotated source: realizable entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/058-002

quality
type: Class
subclass of: specifically dependent continuant
subclass of: Restriction
  on property: part of
  all values from: quality
has OBO namespace: bfo
id: BFO:0000019

specifically dependent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: part of
  all values from: specifically dependent continuant
disjoint with: generically dependent continuant
BFO_0000179: sdc
BFO_0000180: SpecificallyDependentContinuant
example of usage: Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key
example of usage: of one-sided specifically dependent continuants: the mass of this tomato
example of usage: of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.
example of usage: the disposition of this fish to decay
example of usage: the function of this heart: to pump blood
example of usage: the mutual dependence of proton donors and acceptors in chemical reactions [79
example of usage: the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction
example of usage: the pink color of a medium rare piece of grilled filet mignon at its center
example of usage: the role of being a doctor
example of usage: the shape of this hole.
example of usage: the smell of this portion of mozzarella
definition: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
definition: b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
definition: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
editor note: Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
IAO_0000602: (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]

Axiom
annotated source: specifically dependent continuant
annotated property: definition
annotated target: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/050-003

Axiom
annotated source: specifically dependent continuant
annotated property: editor note
annotated target: Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000005
comment: per discussion with Barry Smith

Axiom
annotated source: specifically dependent continuant
annotated property: IAO_0000602
annotated target: (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/050-003

role
type: Class
equivalent class: role
subclass of: role
BFO_0000179: role
BFO_0000180: Role
example of usage: John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
example of usage: the priest role
example of usage: the role of a boundary to demarcate two neighboring administrative territories
example of usage: the role of a building in serving as a military target
example of usage: the role of a stone in marking a property boundary
example of usage: the role of subject in a clinical trial
example of usage: the student role
definition: A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
editor note: BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.
IAO_0000600: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
IAO_0000602: (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]

Axiom
annotated source: role
annotated property: IAO_0000600
annotated target: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/061-001

Axiom
annotated source: role
annotated property: IAO_0000602
annotated target: (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/061-001

fiat object
type: Class
subclass of: material entity
label: fiat object part

object aggregate
type: Class
subclass of: material entity
BFO_0000179: object-aggregate
BFO_0000180: ObjectAggregate
example of usage: a collection of cells in a blood biobank.
example of usage: a swarm of bees is an aggregate of members who are linked together through natural bonds
example of usage: a symphony orchestra
example of usage: an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)
example of usage: defined by fiat: the aggregate of members of an organization
example of usage: defined through physical attachment: the aggregate of atoms in a lump of granite
example of usage: defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container
example of usage: defined via attributive delimitations such as: the patients in this hospital
example of usage: the aggregate of bearings in a constant velocity axle joint
example of usage: the aggregate of blood cells in your body
example of usage: the nitrogen atoms in the atmosphere
example of usage: the restaurants in Palo Alto
example of usage: your collection of Meissen ceramic plates.
editor note: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
editor note: BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).
definition source: ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
IAO_0000600: b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
IAO_0000602: (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]

Axiom
annotated source: object aggregate
annotated property: editor note
annotated target: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000011

Axiom
annotated source: object aggregate
annotated property: editor note
annotated target: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000301

Axiom
annotated source: object aggregate
annotated property: definition source
annotated target: ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000300

Axiom
annotated source: object aggregate
annotated property: IAO_0000600
annotated target: b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/025-004

Axiom
annotated source: object aggregate
annotated property: IAO_0000602
annotated target: (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/025-004

site
type: Class
subclass of: immaterial entity

object
type: Class
subclass of: material entity
has OBO namespace: bfo
id: BFO:0000030

generically dependent continuant
type: Class
subclass of: continuant
BFO_0000179: gdc
BFO_0000180: GenericallyDependentContinuant
example of usage: The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.
example of usage: the pdf file on your laptop, the pdf file that is a copy thereof on my laptop
example of usage: the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.
definition: A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
definition: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
IAO_0000602: (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]

Axiom
annotated source: generically dependent continuant
annotated property: definition
annotated target: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/074-001

Axiom
annotated source: generically dependent continuant
annotated property: IAO_0000602
annotated target: (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/074-001

function
type: Class
subclass of: disposition
BFO_0000179: function
BFO_0000180: Function
example of usage: the function of a hammer to drive in nails
example of usage: the function of a heart pacemaker to regulate the beating of a heart through electricity
example of usage: the function of amylase in saliva to break down starch into sugar
editor note: BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc.
IAO_0000600: A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
IAO_0000602: (forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]

Axiom
annotated source: function
annotated property: IAO_0000600
annotated target: A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/064-001

Axiom
annotated source: function
annotated property: IAO_0000602
annotated target: (forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/064-001

material entity
type: Class
subclass of: independent continuant
disjoint with: immaterial entity
disjoint with: Restriction
  on property: part of
  some values from: immaterial entity
BFO_0000179: material
BFO_0000180: MaterialEntity
example of usage: a flame
example of usage: a forest fire
example of usage: a human being
example of usage: a hurricane
example of usage: a photon
example of usage: a puff of smoke
example of usage: a sea wave
example of usage: a tornado
example of usage: an aggregate of human beings.
example of usage: an energy wave
example of usage: an epidemic
example of usage: the undetached arm of a human being
definition: An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
editor note: BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60
editor note: BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.
editor note: BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.
IAO_0000600: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
IAO_0000601: Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
IAO_0000601: every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
IAO_0000602: (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
IAO_0000602: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
IAO_0000602: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
has OBO namespace: bfo
id: BFO:0000040

Axiom
annotated source: material entity
annotated property: IAO_0000600
annotated target: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/019-002

Axiom
annotated source: material entity
annotated property: IAO_0000601
annotated target: Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/020-002

Axiom
annotated source: material entity
annotated property: IAO_0000601
annotated target: every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/021-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/019-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/021-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/020-002

immaterial entity
type: Class
subclass of: independent continuant
disjoint with: Restriction
  on property: has part
  some values from: material entity
BFO_0000179: immaterial
BFO_0000180: ImmaterialEntity
editor note: BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10

history
type: Class
subclass of: process
BFO_0000179: history
BFO_0000180: History
IAO_0000600: A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])

Axiom
annotated source: history
annotated property: IAO_0000600
annotated target: A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/138-001

anatomical entity
type: Class
subclass of: biological entity
IAO_0000412: caro.owl

connected anatomical structure
type: Class
subclass of: material anatomical entity
IAO_0000412: caro.owl

material anatomical entity
type: Class
subclass of: material entity
subclass of: anatomical entity
IAO_0000412: caro.owl

organism or virus or viroid
type: Class
subclass of: PCO_0000031
definition: Material anatomical entity that is a member of an individual species or is a viral or viroid particle.
IAO_0000589: organism or virus
IAO created by: Melissa Haendel
IAO creation date: 9/18/11

organism
type: Class
subclass of: organism or virus or viroid
definition: An individual member of a clade.
IAO_0000589: organism
IAO created by: mah
IAO creation date: 7.16.2011
comment: A general term for organism that is agnostic about single cell vs multi-cellular. Note that this is a subclass of 'anatomical structure', meaning that an organism must be a connected structure. So, if I take one plant and make a rooted cutting from a it, I now have two (clonally related) organisms.

biological entity
type: Class
subclass of: independent continuant

electron
type: Class
subclass of: lepton
definition: Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.000548579903(13) u, or 0.51099906(15) MeV.
charge: -1
mass: 0.000548579903
monoisotopicmass: 0.0
database_cross_reference: KEGG:C05359
database_cross_reference: PMID:21614077
database_cross_reference: Wikipedia:Electron
has_exact_synonym: electron
has OBO namespace: chebi_ontology
has_related_synonym: Elektron
has_related_synonym: beta
has_related_synonym: beta(-)
has_related_synonym: beta-particle
has_related_synonym: e
has_related_synonym: e(-)
has_related_synonym: e-
has_related_synonym: negatron
id: CHEBI:10545
in_subset: 3 STAR

Axiom
annotated source: electron
annotated property: database_cross_reference
annotated target: PMID:21614077
source: Europe PMC

Axiom
annotated source: electron
annotated property: has_exact_synonym
annotated target: electron
database_cross_reference: ChEBI

Axiom
annotated source: electron
annotated property: has_exact_synonym
annotated target: electron
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: electron
annotated property: has_exact_synonym
annotated target: electron
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: Elektron
database_cross_reference: ChEBI

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: beta
database_cross_reference: IUPAC

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: beta(-)
database_cross_reference: ChEBI

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: beta-particle
database_cross_reference: IUPAC

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: e
database_cross_reference: IUPAC

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: e(-)
database_cross_reference: UniProt

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: e-
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: negatron
database_cross_reference: IUPAC

Mycoplasma genitalium metabolite
type: Class
subclass of: bacterial metabolite
definition: Any bacterial metabolite produced during a metabolic reaction in Mycoplasma genitalium.
has OBO namespace: chebi_ontology
has_related_synonym: Mycoplasma genitalium metabolites
id: CHEBI:131604
in_subset: 3 STAR

Axiom
annotated source: Mycoplasma genitalium metabolite
annotated property: has_related_synonym
annotated target: Mycoplasma genitalium metabolites
database_cross_reference: ChEBI

dicarboxylic acid monoester(1-)
type: Class
subclass of: carboxylic acid anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: dicarboxylic acid monoester
definition: A carboxylic acid anion resulting from the deprotonation of the carboxy group of a dicarboxylic acid monoester.
has OBO namespace: chebi_ontology
id: CHEBI:131605
in_subset: 3 STAR

dicarboxylic acids and O-substituted derivatives
type: Class
subclass of: carbonyl compound
definition: A class of carbonyl compound encompassing dicarboxylic acids and any derivatives obtained by substitution of either one or both of the carboxy hydrogens.
has OBO namespace: chebi_ontology
has_related_synonym: dicarboxylic acids and derivatives
id: CHEBI:131927
in_subset: 3 STAR

Axiom
annotated source: dicarboxylic acids and O-substituted derivatives
annotated property: has_related_synonym
annotated target: dicarboxylic acids and derivatives
database_cross_reference: ChEBI

hyaluronate
type: Class
subclass of: polyanionic polymer
subclass of: carbohydrate acid derivative anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: hyaluronic acid
definition: A carbohydrate acid derivative anion obtained by deprotonation of the carboxy groups of hyaluronic acid; major species at pH 7.3.
charge: -1
formula: (C14H20NO11)n.H2O
has OBO namespace: chebi_ontology
has_related_synonym: hyaluronan
has_related_synonym: hyaluronate polyanion
id: CHEBI:132153
in_subset: 3 STAR

Axiom
annotated source: hyaluronate
annotated property: has_related_synonym
annotated target: hyaluronan
database_cross_reference: UniProt

Axiom
annotated source: hyaluronate
annotated property: has_related_synonym
annotated target: hyaluronate polyanion
database_cross_reference: ChEBI

volatile organic compound
type: Class
subclass of: organic molecule
definition: Any organic compound having an initial boiling point less than or equal to 250 degreeC (482 degreeF) measured at a standard atmospheric pressure of 101.3 kPa.
database_cross_reference: Wikipedia:Volatile_organic_compound
has OBO namespace: chebi_ontology
has_related_synonym: VOC
has_related_synonym: VOCs
has_related_synonym: volatile organic compounds
id: CHEBI:134179
in_subset: 3 STAR

Axiom
annotated source: volatile organic compound
annotated property: has_related_synonym
annotated target: VOC
database_cross_reference: ChEBI

Axiom
annotated source: volatile organic compound
annotated property: has_related_synonym
annotated target: VOCs
database_cross_reference: ChEBI

Axiom
annotated source: volatile organic compound
annotated property: has_related_synonym
annotated target: volatile organic compounds
database_cross_reference: ChEBI

inorganic acid
type: Class
subclass of: Bronsted acid
definition: A Bronsted acid derived from one or more inorganic compounds. Inorganic acids (also known as mineral acids) form hydrons and conjugate base ions when dissolved in water.
database_cross_reference: Wikipedia:Mineral_acid
has OBO namespace: chebi_ontology
has_related_synonym: inorganic acids
has_related_synonym: mineral acid
has_related_synonym: mineral acids
id: CHEBI:138103
in_subset: 3 STAR

Axiom
annotated source: inorganic acid
annotated property: has_related_synonym
annotated target: inorganic acids
database_cross_reference: ChEBI

Axiom
annotated source: inorganic acid
annotated property: has_related_synonym
annotated target: mineral acid
database_cross_reference: ChEBI

Axiom
annotated source: inorganic acid
annotated property: has_related_synonym
annotated target: mineral acids
database_cross_reference: ChEBI

gas molecular entity
type: Class
subclass of: main group molecular entity
definition: Any main group molecular entity that is gaseous at standard temperature and pressure (STP; 0degreeC and 100 kPa).
database_cross_reference: Wikipedia:https://en.wikipedia.org/wiki/Gas
has OBO namespace: chebi_ontology
has_related_synonym: gas molecular entities
has_related_synonym: gaseous molecular entities
has_related_synonym: gaseous molecular entity
id: CHEBI:138675
in_subset: 3 STAR

Axiom
annotated source: gas molecular entity
annotated property: has_related_synonym
annotated target: gas molecular entities
database_cross_reference: ChEBI

Axiom
annotated source: gas molecular entity
annotated property: has_related_synonym
annotated target: gaseous molecular entities
database_cross_reference: ChEBI

Axiom
annotated source: gas molecular entity
annotated property: has_related_synonym
annotated target: gaseous molecular entity
database_cross_reference: ChEBI

chlorophyll(1-)
type: Class
subclass of: cyclic tetrapyrrole anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: chlorophyll
definition: A cyclic tetrapyrrole anion that is the carbanion obtained by removal of the acidic proton from position 21 of any chlorophyll. Major species at pH 7.3
charge: -1
formula: C49H57MgN4O5R4
mass: 806.308
monoisotopicmass: 805.41794
database_cross_reference: Wikipedia:Chlorophyll
has OBO namespace: chebi_ontology
has_related_synonym: a chlorophyll
id: CHEBI:139291
in_subset: 3 STAR

Axiom
annotated source: chlorophyll(1-)
annotated property: database_cross_reference
annotated target: Wikipedia:Chlorophyll
source: SUBMITTER

Axiom
annotated source: chlorophyll(1-)
annotated property: has_related_synonym
annotated target: a chlorophyll
database_cross_reference: UniProt

chlorophyllide(2-)
type: Class
subclass of: monocarboxylic acid anion
subclass of: cyclic tetrapyrrole anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: chlorophyllide
definition: A cyclic tetrapyrrole anion obtained by removal of the acidic proton from position 21 as well as deprotonation of the carboxy group of any chlorophyllide. Major species at pH 7.3
charge: -2
formula: C29H18MgN4O5R4
mass: 526.783
monoisotopicmass: 526.11276
smiles: C1=2N3C(C=C4[N+]5=C(C=C6N7C8=C(C9=[N+](C(=C1)[C@H]([C@@H]9CCC([O-])=O)C)[Mg-2]735)[C-](C(C8=C6C)=O)C(=O)OC)C(=C4*)*)=C(C2*)*
has OBO namespace: chebi_ontology
has_related_synonym: a chlorophyllide
id: CHEBI:139292
in_subset: 3 STAR

Axiom
annotated source: chlorophyllide(2-)
annotated property: has_related_synonym
annotated target: a chlorophyllide
database_cross_reference: UniProt

carbamate
type: Class
subclass of: amino-acid anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: carbamic acid
charge: -1
formula: CH2NO2
inchi: InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)/p-1
inchikey: KXDHJXZQYSOELW-UHFFFAOYSA-M
mass: 60.03212
monoisotopicmass: 60.00910
smiles: NC([O-])=O
database_cross_reference: Beilstein:3903503
database_cross_reference: CAS:302-11-4
database_cross_reference: Gmelin:239604
has_exact_synonym: carbamate
has OBO namespace: chebi_ontology
has_related_synonym: Carbamat
has_related_synonym: Karbamat
has_related_synonym: carbamate ion
has_related_synonym: carbamic acid, ion(1-)
id: CHEBI:13941
in_subset: 3 STAR

Axiom
annotated source: carbamate
annotated property: database_cross_reference
annotated target: Beilstein:3903503
source: Beilstein

Axiom
annotated source: carbamate
annotated property: database_cross_reference
annotated target: CAS:302-11-4
source: ChemIDplus

Axiom
annotated source: carbamate
annotated property: database_cross_reference
annotated target: Gmelin:239604
source: Gmelin

Axiom
annotated source: carbamate
annotated property: has_exact_synonym
annotated target: carbamate
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbamate
annotated property: has_exact_synonym
annotated target: carbamate
database_cross_reference: UniProt

Axiom
annotated source: carbamate
annotated property: has_related_synonym
annotated target: Carbamat
database_cross_reference: ChEBI

Axiom
annotated source: carbamate
annotated property: has_related_synonym
annotated target: Karbamat
database_cross_reference: ChEBI

Axiom
annotated source: carbamate
annotated property: has_related_synonym
annotated target: carbamate ion
database_cross_reference: ChemIDplus

Axiom
annotated source: carbamate
annotated property: has_related_synonym
annotated target: carbamic acid, ion(1-)
database_cross_reference: ChemIDplus

acceptor
type: Class
subclass of: chemical role
definition: A molecular entity that can accept an electron, a pair of electrons, an atom or a group from another molecular entity.
has alternative id: CHEBI:13699
has alternative id: CHEBI:2377
database_cross_reference: KEGG:C00028
database_cross_reference: KEGG:C16722
has_exact_synonym: Acceptor
has OBO namespace: chebi_ontology
has_related_synonym: A
has_related_synonym: Akzeptor
has_related_synonym: Hydrogen-acceptor
has_related_synonym: Oxidized donor
has_related_synonym: accepteur
id: CHEBI:15339
in_subset: 3 STAR

Axiom
annotated source: acceptor
annotated property: has_exact_synonym
annotated target: Acceptor
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: acceptor
annotated property: has_related_synonym
annotated target: A
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: acceptor
annotated property: has_related_synonym
annotated target: Akzeptor
database_cross_reference: ChEBI

Axiom
annotated source: acceptor
annotated property: has_related_synonym
annotated target: Hydrogen-acceptor
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: acceptor
annotated property: has_related_synonym
annotated target: Oxidized donor
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: acceptor
annotated property: has_related_synonym
annotated target: accepteur
database_cross_reference: ChEBI

dioxygen
type: Class
subclass of: gas molecular entity
subclass of: elemental molecule
subclass of: diatomic oxygen
subclass of: Restriction
  on property: has role
  some values from: micronutrient
subclass of: Restriction
  on property: has role
  some values from: reagent
subclass of: Restriction
  on property: has role
  some values from: anti-inflammatory drug
subclass of: Restriction
  on property: has role
  some values from: oxidising agent
subclass of: Restriction
  on property: has role
  some values from: Saccharomyces cerevisiae metabolite
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: has role
  some values from: food packaging gas
subclass of: Restriction
  on property: is conjugate base of
  some values from: hydridodioxygen(1+)
charge: 0
formula: O2
inchi: InChI=1S/O2/c1-2
inchikey: MYMOFIZGZYHOMD-UHFFFAOYSA-N
mass: 31.99880
monoisotopicmass: 31.98983
smiles: O=O
has alternative id: CHEBI:10745
has alternative id: CHEBI:13416
has alternative id: CHEBI:23833
has alternative id: CHEBI:25366
has alternative id: CHEBI:30491
has alternative id: CHEBI:44742
has alternative id: CHEBI:7860
database_cross_reference: CAS:7782-44-7
database_cross_reference: Gmelin:485
database_cross_reference: HMDB:HMDB0001377
database_cross_reference: KEGG:C00007
database_cross_reference: KEGG:D00003
database_cross_reference: MetaCyc:OXYGEN-MOLECULE
database_cross_reference: MolBase:750
database_cross_reference: PDBeChem:OXY
database_cross_reference: PMID:10906528
database_cross_reference: PMID:16977326
database_cross_reference: PMID:18210929
database_cross_reference: PMID:18638417
database_cross_reference: PMID:19840863
database_cross_reference: PMID:7710549
database_cross_reference: PMID:9463773
database_cross_reference: Wikipedia:Oxygen
has_exact_synonym: dioxygen
has OBO namespace: chebi_ontology
has_related_synonym: Disauerstoff
has_related_synonym: E 948
has_related_synonym: E-948
has_related_synonym: E948
has_related_synonym: O2
has_related_synonym: OXYGEN MOLECULE
has_related_synonym: Oxygen
has_related_synonym: [OO]
has_related_synonym: dioxygene
has_related_synonym: molecular oxygen
id: CHEBI:15379
in_subset: 3 STAR

Axiom
annotated source: dioxygen
annotated property: database_cross_reference
annotated target: CAS:7782-44-7
source: ChemIDplus

Axiom
annotated source: dioxygen
annotated property: database_cross_reference
annotated target: CAS:7782-44-7
source: KEGG COMPOUND

Axiom
annotated source: dioxygen
annotated property: database_cross_reference
annotated target: CAS:7782-44-7
source: NIST Chemistry WebBook

Axiom
annotated source: dioxygen
annotated property: database_cross_reference
annotated target: Gmelin:485
source: Gmelin

Axiom
annotated source: dioxygen
annotated property: database_cross_reference
annotated target: PMID:10906528
source: Europe PMC

Axiom
annotated source: dioxygen
annotated property: database_cross_reference
annotated target: PMID:16977326
source: Europe PMC

Axiom
annotated source: dioxygen
annotated property: database_cross_reference
annotated target: PMID:18210929
source: Europe PMC

Axiom
annotated source: dioxygen
annotated property: database_cross_reference
annotated target: PMID:18638417
source: Europe PMC

Axiom
annotated source: dioxygen
annotated property: database_cross_reference
annotated target: PMID:19840863
source: Europe PMC

Axiom
annotated source: dioxygen
annotated property: database_cross_reference
annotated target: PMID:7710549
source: Europe PMC

Axiom
annotated source: dioxygen
annotated property: database_cross_reference
annotated target: PMID:9463773
source: Europe PMC

Axiom
annotated source: dioxygen
annotated property: has_exact_synonym
annotated target: dioxygen
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: dioxygen
annotated property: has_related_synonym
annotated target: Disauerstoff
database_cross_reference: ChEBI

Axiom
annotated source: dioxygen
annotated property: has_related_synonym
annotated target: E 948
database_cross_reference: ChEBI

Axiom
annotated source: dioxygen
annotated property: has_related_synonym
annotated target: E-948
database_cross_reference: ChEBI

Axiom
annotated source: dioxygen
annotated property: has_related_synonym
annotated target: E948
database_cross_reference: ChEBI

Axiom
annotated source: dioxygen
annotated property: has_related_synonym
annotated target: O2
database_cross_reference: IUPAC

Axiom
annotated source: dioxygen
annotated property: has_related_synonym
annotated target: O2
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: dioxygen
annotated property: has_related_synonym
annotated target: O2
database_cross_reference: UniProt

Axiom
annotated source: dioxygen
annotated property: has_related_synonym
annotated target: OXYGEN MOLECULE
database_cross_reference: PDBeChem

Axiom
annotated source: dioxygen
annotated property: has_related_synonym
annotated target: Oxygen
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: dioxygen
annotated property: has_related_synonym
annotated target: [OO]
database_cross_reference: MolBase

Axiom
annotated source: dioxygen
annotated property: has_related_synonym
annotated target: dioxygene
database_cross_reference: ChEBI

Axiom
annotated source: dioxygen
annotated property: has_related_synonym
annotated target: molecular oxygen
database_cross_reference: ChEBI

primary alcohol
type: Class
subclass of: alcohol
definition: A primary alcohol is a compound in which a hydroxy group, -OH, is attached to a saturated carbon atom which has either three hydrogen atoms attached to it or only one other carbon atom and two hydrogen atoms attached to it.
charge: 0
formula: CH3OR
mass: 31.034
monoisotopicmass: 31.01839
smiles: *C(O)([H])[H]
has alternative id: CHEBI:13676
has alternative id: CHEBI:14887
has alternative id: CHEBI:26262
has alternative id: CHEBI:57489
has alternative id: CHEBI:8406
database_cross_reference: KEGG:C00226
has_exact_synonym: Primary alcohol
has OBO namespace: chebi_ontology
has_related_synonym: 1-Alcohol
has_related_synonym: a primary alcohol
has_related_synonym: primary alcohols
id: CHEBI:15734
in_subset: 3 STAR

Axiom
annotated source: primary alcohol
annotated property: has_exact_synonym
annotated target: Primary alcohol
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: primary alcohol
annotated property: has_related_synonym
annotated target: 1-Alcohol
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: primary alcohol
annotated property: has_related_synonym
annotated target: a primary alcohol
database_cross_reference: UniProt

Axiom
annotated source: primary alcohol
annotated property: has_related_synonym
annotated target: primary alcohols
database_cross_reference: ChEBI

polypeptide
type: Class
subclass of: peptide
subclass of: macromolecule
definition: A peptide containing ten or more amino acid residues.
formula: C4H6N2O3R2(C2H2NOR)n
has alternative id: CHEBI:14860
has alternative id: CHEBI:8314
database_cross_reference: KEGG:C00403
has_exact_synonym: Polypeptide
has_exact_synonym: polypeptides
has OBO namespace: chebi_ontology
has_related_synonym: Polypeptid
has_related_synonym: polipeptido
id: CHEBI:15841
in_subset: 3 STAR

Axiom
annotated source: polypeptide
annotated property: has_exact_synonym
annotated target: Polypeptide
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: polypeptide
annotated property: has_exact_synonym
annotated target: polypeptides
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: polypeptide
annotated property: has_related_synonym
annotated target: Polypeptid
database_cross_reference: ChEBI

Axiom
annotated source: polypeptide
annotated property: has_related_synonym
annotated target: polipeptido
database_cross_reference: ChEBI

polynucleotide
type: Class
subclass of: information biomacromolecule
subclass of: nucleobase-containing molecular entity
subclass of: Restriction
  on property: has part
  some values from: nucleotide residue
definition: A nucleobase-containing molecular entity with a polymeric structure comprised of a linear sequence of 13 or more nucleotide residues.
charge: 0
formula: (C5H8O6PR)n.C10H17O10PR2
has alternative id: CHEBI:13672
has alternative id: CHEBI:14859
has alternative id: CHEBI:8312
database_cross_reference: KEGG:C00419
has_exact_synonym: Polynucleotide
has OBO namespace: chebi_ontology
has_related_synonym: polynucleotides
id: CHEBI:15986
in_subset: 3 STAR

Axiom
annotated source: polynucleotide
annotated property: has_exact_synonym
annotated target: Polynucleotide
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: polynucleotide
annotated property: has_related_synonym
annotated target: polynucleotides
database_cross_reference: ChEBI

ammonia
type: Class
subclass of: gas molecular entity
subclass of: azane
subclass of: mononuclear parent hydride
definition: An azane that consists of a single nitrogen atom covelently bonded to three hydrogen atoms.
charge: 0
formula: H3N
inchi: InChI=1S/H3N/h1H3
inchikey: QGZKDVFQNNGYKY-UHFFFAOYSA-N
mass: 17.03056
monoisotopicmass: 17.02655
smiles: [H]N([H])[H]
has alternative id: CHEBI:13405
has alternative id: CHEBI:13406
has alternative id: CHEBI:13407
has alternative id: CHEBI:13771
has alternative id: CHEBI:22533
has alternative id: CHEBI:44269
has alternative id: CHEBI:44284
has alternative id: CHEBI:44404
has alternative id: CHEBI:7434
database_cross_reference: Beilstein:3587154
database_cross_reference: CAS:7664-41-7
database_cross_reference: Drug_Central:4625
database_cross_reference: Gmelin:79
database_cross_reference: HMDB:HMDB0000051
database_cross_reference: KEGG:C00014
database_cross_reference: KEGG:D02916
database_cross_reference: KNApSAcK:C00007267
database_cross_reference: MetaCyc:AMMONIA
database_cross_reference: MolBase:930
database_cross_reference: PDBeChem:NH3
database_cross_reference: PMID:110589
database_cross_reference: PMID:11139349
database_cross_reference: PMID:11540049
database_cross_reference: PMID:11746427
database_cross_reference: PMID:11783653
database_cross_reference: PMID:13753780
database_cross_reference: PMID:14663195
database_cross_reference: PMID:15092448
database_cross_reference: PMID:15094021
database_cross_reference: PMID:15554424
database_cross_reference: PMID:15969015
database_cross_reference: PMID:16008360
database_cross_reference: PMID:16050680
database_cross_reference: PMID:16348008
database_cross_reference: PMID:16349403
database_cross_reference: PMID:16614889
database_cross_reference: PMID:16664306
database_cross_reference: PMID:16842901
database_cross_reference: PMID:17025297
database_cross_reference: PMID:17439666
database_cross_reference: PMID:17569513
database_cross_reference: PMID:17737668
database_cross_reference: PMID:18670398
database_cross_reference: PMID:22002069
database_cross_reference: PMID:22081570
database_cross_reference: PMID:22088435
database_cross_reference: PMID:22100291
database_cross_reference: PMID:22130175
database_cross_reference: PMID:22150211
database_cross_reference: PMID:22240068
database_cross_reference: PMID:22290316
database_cross_reference: PMID:22342082
database_cross_reference: PMID:22385337
database_cross_reference: PMID:22443779
database_cross_reference: PMID:22560242
database_cross_reference: Reaxys:3587154
database_cross_reference: Wikipedia:Ammonia
has_exact_synonym: AMMONIA
has_exact_synonym: Ammonia
has_exact_synonym: ammonia
has_exact_synonym: azane
has OBO namespace: chebi_ontology
has_related_synonym: Ammoniak
has_related_synonym: NH3
has_related_synonym: R-717
has_related_synonym: [NH3]
has_related_synonym: ammoniac
has_related_synonym: amoniaco

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: Beilstein:3587154
source: Beilstein

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: CAS:7664-41-7
source: ChemIDplus

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: CAS:7664-41-7
source: KEGG COMPOUND

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: CAS:7664-41-7
source: NIST Chemistry WebBook

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: Drug_Central:4625
source: DrugCentral

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: Gmelin:79
source: Gmelin

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:110589
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:11139349
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:11540049
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:11746427
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:11783653
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:13753780
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:14663195
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:15092448
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:15094021
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:15554424
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:15969015
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:16008360
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:16050680
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:16348008
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:16349403
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:16614889
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:16664306
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:16842901
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:17025297
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:17439666
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:17569513
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:17737668
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:18670398
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:22002069
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:22081570
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:22088435
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:22100291
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:22130175
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:22150211
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:22240068
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:22290316
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:22342082
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:22385337
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:22443779
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: PMID:22560242
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: database_cross_reference
annotated target: Reaxys:3587154
source: Reaxys

Axiom
annotated source: ammonia
annotated property: has_exact_synonym
annotated target: AMMONIA
database_cross_reference: PDBeChem

Axiom
annotated source: ammonia
annotated property: has_exact_synonym
annotated target: Ammonia
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: ammonia
annotated property: has_exact_synonym
annotated target: ammonia
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ammonia
annotated property: has_exact_synonym
annotated target: azane
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: Ammoniak
database_cross_reference: ChemIDplus

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: NH3
database_cross_reference: IUPAC

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: NH3
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: NH3
database_cross_reference: UniProt

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: R-717
database_cross_reference: ChEBI

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: [NH3]
database_cross_reference: MolBase

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: ammoniac
database_cross_reference: ChEBI

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: amoniaco
database_cross_reference: ChEBI

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: spirit of hartshorn
database_cross_reference: ChemIDplus

methane
type: Class
subclass of: gas molecular entity
subclass of: alkane
subclass of: mononuclear parent hydride
subclass of: one-carbon compound
subclass of: Restriction
  on property: has role
  some values from: fossil fuel
subclass of: Restriction
  on property: has role
  some values from: greenhouse gas
subclass of: Restriction
  on property: has role
  some values from: bacterial metabolite
subclass of: Restriction
  on property: is conjugate acid of
  some values from: methanide
definition: A one-carbon compound in which the carbon is attached by single bonds to four hydrogen atoms. It is a colourless, odourless, non-toxic but flammable gas (b.p. -161degreeC).
charge: 0
formula: CH4
inchi: InChI=1S/CH4/h1H4
inchikey: VNWKTOKETHGBQD-UHFFFAOYSA-N
mass: 16.04246
monoisotopicmass: 16.03130
smiles: [H]C([H])([H])[H]
has alternative id: CHEBI:14585
has alternative id: CHEBI:25220
has alternative id: CHEBI:6811
database_cross_reference: Beilstein:1718732
database_cross_reference: CAS:74-82-8
database_cross_reference: Gmelin:59
database_cross_reference: HMDB:HMDB0002714
database_cross_reference: KEGG:C01438
database_cross_reference: MetaCyc:CH4
database_cross_reference: PMID:17791569
database_cross_reference: PMID:23104415
database_cross_reference: PMID:23353606
database_cross_reference: PMID:23376302
database_cross_reference: PMID:23397538
database_cross_reference: PMID:23718889
database_cross_reference: PMID:23739479
database_cross_reference: PMID:23742231
database_cross_reference: PMID:23756351
database_cross_reference: PMID:24132456
database_cross_reference: PMID:24161402
database_cross_reference: PMID:24259373
database_cross_reference: Patent:FR994032
database_cross_reference: Patent:US2583090
database_cross_reference: Reaxys:1718732
database_cross_reference: UM-BBD_compID:c0095
database_cross_reference: Wikipedia:Methane
has_exact_synonym: Methane
has_exact_synonym: methane
has_exact_synonym: tetrahydridocarbon
has OBO namespace: chebi_ontology
has_related_synonym: CH4
has_related_synonym: Methan
has_related_synonym: marsh gas
has_related_synonym: metano
has_related_synonym: methyl hydride
id: CHEBI:16183
in_subset: 3 STAR

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: Beilstein:1718732
source: ChemIDplus

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: CAS:74-82-8
source: ChemIDplus

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: CAS:74-82-8
source: KEGG COMPOUND

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: CAS:74-82-8
source: NIST Chemistry WebBook

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: Gmelin:59
source: Gmelin

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: PMID:17791569
source: Europe PMC

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: PMID:23104415
source: Europe PMC

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: PMID:23353606
source: Europe PMC

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: PMID:23376302
source: Europe PMC

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: PMID:23397538
source: Europe PMC

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: PMID:23718889
source: Europe PMC

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: PMID:23739479
source: Europe PMC

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: PMID:23742231
source: Europe PMC

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: PMID:23756351
source: Europe PMC

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: PMID:24132456
source: Europe PMC

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: PMID:24161402
source: Europe PMC

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: PMID:24259373
source: Europe PMC

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: Reaxys:1718732
source: Reaxys

Axiom
annotated source: methane
annotated property: database_cross_reference
annotated target: UM-BBD_compID:c0095
source: UM-BBD

Axiom
annotated source: methane
annotated property: has_exact_synonym
annotated target: Methane
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: methane
annotated property: has_exact_synonym
annotated target: methane
database_cross_reference: ChEBI

Axiom
annotated source: methane
annotated property: has_exact_synonym
annotated target: methane
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: methane
annotated property: has_exact_synonym
annotated target: methane
database_cross_reference: UniProt

Axiom
annotated source: methane
annotated property: has_exact_synonym
annotated target: tetrahydridocarbon
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: methane
annotated property: has_related_synonym
annotated target: CH4
database_cross_reference: IUPAC

Axiom
annotated source: methane
annotated property: has_related_synonym
annotated target: Methan
database_cross_reference: ChEBI

Axiom
annotated source: methane
annotated property: has_related_synonym
annotated target: marsh gas
database_cross_reference: NIST_Chemistry_WebBook

Axiom
annotated source: methane
annotated property: has_related_synonym
annotated target: metano
database_cross_reference: ChEBI

Axiom
annotated source: methane
annotated property: has_related_synonym
annotated target: methyl hydride
database_cross_reference: ChemIDplus

sulfate
type: Class
subclass of: sulfur oxoanion
subclass of: sulfur oxide
subclass of: divalent inorganic anion
subclass of: Restriction
  on property: has role
  some values from: cofactor
subclass of: Restriction
  on property: has role
  some values from: Saccharomyces cerevisiae metabolite
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: is conjugate base of
  some values from: hydrogensulfate
definition: A sulfur oxoanion obtained by deprotonation of both OH groups of sulfuric acid.
charge: -2
formula: O4S
inchi: InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2
inchikey: QAOWNCQODCNURD-UHFFFAOYSA-L
mass: 96.06360
monoisotopicmass: 95.95283
smiles: [O-]S([O-])(=O)=O
has alternative id: CHEBI:15135
has alternative id: CHEBI:45687
has alternative id: CHEBI:9335
database_cross_reference: Beilstein:3648446
database_cross_reference: CAS:14808-79-8
database_cross_reference: Gmelin:2120
database_cross_reference: HMDB:HMDB0001448
database_cross_reference: KEGG:C00059
database_cross_reference: KEGG:D05963
database_cross_reference: MetaCyc:SULFATE
database_cross_reference: PDBeChem:SO4
database_cross_reference: PMID:11200094
database_cross_reference: PMID:11452993
database_cross_reference: PMID:11581495
database_cross_reference: PMID:11798107
database_cross_reference: PMID:12166931
database_cross_reference: PMID:12668033
database_cross_reference: PMID:14597181
database_cross_reference: PMID:15093386
database_cross_reference: PMID:15984785
database_cross_reference: PMID:16186560
database_cross_reference: PMID:16345535
database_cross_reference: PMID:16347366
database_cross_reference: PMID:16348007
database_cross_reference: PMID:16483812
database_cross_reference: PMID:16534979
database_cross_reference: PMID:16656509
database_cross_reference: PMID:16742508
database_cross_reference: PMID:16742518
database_cross_reference: PMID:17120760
database_cross_reference: PMID:17420092
database_cross_reference: PMID:17439666
database_cross_reference: PMID:17709180
database_cross_reference: PMID:18398178
database_cross_reference: PMID:18815700
database_cross_reference: PMID:18846414
database_cross_reference: PMID:19047345
database_cross_reference: PMID:19244483
database_cross_reference: PMID:19544990
database_cross_reference: PMID:19628332
database_cross_reference: PMID:19812358
database_cross_reference: PMID:30398859
database_cross_reference: Reaxys:3648446
database_cross_reference: Wikipedia:Sulfate
has_exact_synonym: Sulfate
has_exact_synonym: sulfate
has_exact_synonym: tetraoxidosulfate(2-)
has_exact_synonym: tetraoxosulfate(2-)
has_exact_synonym: tetraoxosulfate(VI)
has OBO namespace: chebi_ontology
has_related_synonym: SO4(2-)
has_related_synonym: SULFATE ION
has_related_synonym: Sulfate anion(2-)
has_related_synonym: Sulfate dianion
has_related_synonym: Sulfate(2-)
has_related_synonym: Sulfuric acid ion(2-)
has_related_synonym: [SO4](2-)
has_related_synonym: sulphate
has_related_synonym: sulphate ion
id: CHEBI:16189
in_subset: 3 STAR

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: Beilstein:3648446
source: Beilstein

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: CAS:14808-79-8
source: ChemIDplus

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: CAS:14808-79-8
source: NIST Chemistry WebBook

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: Gmelin:2120
source: Gmelin

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:11200094
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:11452993
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:11581495
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:11798107
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:12166931
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:12668033
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:14597181
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:15093386
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:15984785
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:16186560
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:16345535
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:16347366
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:16348007
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:16483812
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:16534979
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:16656509
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:16742508
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:16742518
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:17120760
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:17420092
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:17439666
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:17709180
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:18398178
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:18815700
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:18846414
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:19047345
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:19244483
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:19544990
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:19628332
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:19812358
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: PMID:30398859
source: Europe PMC

Axiom
annotated source: sulfate
annotated property: database_cross_reference
annotated target: Reaxys:3648446
source: Reaxys

Axiom
annotated source: sulfate
annotated property: has_exact_synonym
annotated target: Sulfate
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: sulfate
annotated property: has_exact_synonym
annotated target: sulfate
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sulfate
annotated property: has_exact_synonym
annotated target: sulfate
database_cross_reference: UniProt

Axiom
annotated source: sulfate
annotated property: has_exact_synonym
annotated target: tetraoxidosulfate(2-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sulfate
annotated property: has_exact_synonym
annotated target: tetraoxosulfate(2-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sulfate
annotated property: has_exact_synonym
annotated target: tetraoxosulfate(VI)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sulfate
annotated property: has_related_synonym
annotated target: SO4(2-)
database_cross_reference: IUPAC

Axiom
annotated source: sulfate
annotated property: has_related_synonym
annotated target: SULFATE ION
database_cross_reference: PDBeChem

Axiom
annotated source: sulfate
annotated property: has_related_synonym
annotated target: Sulfate anion(2-)
database_cross_reference: HMDB

Axiom
annotated source: sulfate
annotated property: has_related_synonym
annotated target: Sulfate dianion
database_cross_reference: HMDB

Axiom
annotated source: sulfate
annotated property: has_related_synonym
annotated target: Sulfate(2-)
database_cross_reference: HMDB

Axiom
annotated source: sulfate
annotated property: has_related_synonym
annotated target: Sulfuric acid ion(2-)
database_cross_reference: HMDB

Axiom
annotated source: sulfate
annotated property: has_related_synonym
annotated target: [SO4](2-)
database_cross_reference: IUPAC

Axiom
annotated source: sulfate
annotated property: has_related_synonym
annotated target: sulphate
database_cross_reference: ChEBI

Axiom
annotated source: sulfate
annotated property: has_related_synonym
annotated target: sulphate ion
database_cross_reference: ChEBI

hyaluronic acid
type: Class
subclass of: mucopolysaccharide
subclass of: exopolysaccharide
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: is conjugate acid of
  some values from: hyaluronate
definition: A mucopolysaccharide composed of N-acetylglucosamine and glucuronic acid subunits. It is found in the connective tissues of vertebrates. A principal constituent of the extracellular matrix (ECM), it mediates the growth and metastasis of tumour cells.
charge: 0
formula: (C14H21NO12)n
has alternative id: CHEBI:14412
has alternative id: CHEBI:24622
has alternative id: CHEBI:24623
has alternative id: CHEBI:5772
database_cross_reference: Beilstein:8538277
database_cross_reference: CAS:9004-61-9
database_cross_reference: HMDB:HMDB0010366
database_cross_reference: KEGG:C00518
database_cross_reference: KEGG:D08043
database_cross_reference: KEGG:G10505
database_cross_reference: PMID:11122186
database_cross_reference: PMID:18056362
database_cross_reference: PMID:18290544
database_cross_reference: Reaxys:8187837
database_cross_reference: Wikipedia:Hyaluronan
has_exact_synonym: Hyaluronic acid
has OBO namespace: chebi_ontology
has_related_synonym: Hyaluronsaeure
has_related_synonym: [beta-D-glucopyranuronosyl-(1->3)-2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl-(1->4)]n
has_related_synonym: [beta-N-Acetyl-D-glucosaminyl(1,4)beta-D-glucuronosyl(1,3)]n
has_related_synonym: acide hyaluronique
has_related_synonym: acido hialuronico
has_related_synonym: hyaluronan
id: CHEBI:16336
in_subset: 3 STAR

Axiom
annotated source: hyaluronic acid
annotated property: database_cross_reference
annotated target: Beilstein:8538277
source: Beilstein

Axiom
annotated source: hyaluronic acid
annotated property: database_cross_reference
annotated target: CAS:9004-61-9
source: ChemIDplus

Axiom
annotated source: hyaluronic acid
annotated property: database_cross_reference
annotated target: CAS:9004-61-9
source: KEGG COMPOUND

Axiom
annotated source: hyaluronic acid
annotated property: database_cross_reference
annotated target: PMID:11122186
source: Europe PMC

Axiom
annotated source: hyaluronic acid
annotated property: database_cross_reference
annotated target: PMID:18056362
source: Europe PMC

Axiom
annotated source: hyaluronic acid
annotated property: database_cross_reference
annotated target: PMID:18290544
source: Europe PMC

Axiom
annotated source: hyaluronic acid
annotated property: database_cross_reference
annotated target: Reaxys:8187837
source: Reaxys

Axiom
annotated source: hyaluronic acid
annotated property: has_exact_synonym
annotated target: Hyaluronic acid
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: hyaluronic acid
annotated property: has_related_synonym
annotated target: Hyaluronsaeure
database_cross_reference: ChEBI

Axiom
annotated source: hyaluronic acid
annotated property: has_related_synonym
annotated target: [beta-D-glucopyranuronosyl-(1->3)-2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl-(1->4)]n
database_cross_reference: ChEBI

Axiom
annotated source: hyaluronic acid
annotated property: has_related_synonym
annotated target: [beta-N-Acetyl-D-glucosaminyl(1,4)beta-D-glucuronosyl(1,3)]n
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: hyaluronic acid
annotated property: has_related_synonym
annotated target: acide hyaluronique
database_cross_reference: ChEBI

Axiom
annotated source: hyaluronic acid
annotated property: has_related_synonym
annotated target: acido hialuronico
database_cross_reference: ChEBI

Axiom
annotated source: hyaluronic acid
annotated property: has_related_synonym
annotated target: hyaluronan
database_cross_reference: ChEBI

carbon dioxide
type: Class
subclass of: gas molecular entity
subclass of: carbon oxide
subclass of: one-carbon compound
subclass of: Restriction
  on property: has role
  some values from: vasodilator agent
subclass of: Restriction
  on property: has role
  some values from: anaesthetic
subclass of: Restriction
  on property: has role
  some values from: solvent
subclass of: Restriction
  on property: has role
  some values from: antagonist
subclass of: Restriction
  on property: has role
  some values from: mouse metabolite
subclass of: Restriction
  on property: has role
  some values from: Saccharomyces cerevisiae metabolite
subclass of: Restriction
  on property: has role
  some values from: greenhouse gas
subclass of: Restriction
  on property: has role
  some values from: Escherichia coli metabolite
definition: A one-carbon compound with formula CO2 in which the carbon is attached to each oxygen atom by a double bond. A colourless, odourless gas under normal conditions, it is produced during respiration by all animals, fungi and microorganisms that depend directly or indirectly on living or decaying plants for food.
charge: 0
formula: CO2
inchi: InChI=1S/CO2/c2-1-3
inchikey: CURLTUGMZLYLDI-UHFFFAOYSA-N
mass: 44.010
monoisotopicmass: 43.98983
smiles: O=C=O
has alternative id: CHEBI:13282
has alternative id: CHEBI:13283
has alternative id: CHEBI:13284
has alternative id: CHEBI:13285
has alternative id: CHEBI:23011
has alternative id: CHEBI:3283
has alternative id: CHEBI:48829
database_cross_reference: Beilstein:1900390
database_cross_reference: CAS:124-38-9
database_cross_reference: Drug_Central:4256
database_cross_reference: Gmelin:989
database_cross_reference: HMDB:HMDB0001967
database_cross_reference: KEGG:C00011
database_cross_reference: KEGG:D00004
database_cross_reference: MetaCyc:CARBON-DIOXIDE
database_cross_reference: MolBase:752
database_cross_reference: PDBeChem:CO2
database_cross_reference: PMID:10826146
database_cross_reference: PMID:11094503
database_cross_reference: PMID:11584085
database_cross_reference: PMID:11802652
database_cross_reference: PMID:14639145
database_cross_reference: PMID:15050588
database_cross_reference: PMID:16591971
database_cross_reference: PMID:16656478
database_cross_reference: PMID:16659660
database_cross_reference: PMID:17190796
database_cross_reference: PMID:17448243
database_cross_reference: PMID:17878298
database_cross_reference: PMID:17884085
database_cross_reference: PMID:19043767
database_cross_reference: PMID:19259576
database_cross_reference: PMID:19854893
database_cross_reference: PMID:23384758
database_cross_reference: PMID:23828359
database_cross_reference: PMID:24258718
database_cross_reference: PMID:8482095
database_cross_reference: PMID:8818713
database_cross_reference: PMID:8869828
database_cross_reference: PMID:9611769
database_cross_reference: PMID:9730350
database_cross_reference: PPDB:119
database_cross_reference: Reaxys:1900390
database_cross_reference: UM-BBD_compID:c0131
database_cross_reference: Wikipedia:Carbon_dioxide
has_exact_synonym: CARBON DIOXIDE
has_exact_synonym: Carbon dioxide
has_exact_synonym: carbon dioxide
has_exact_synonym: dioxidocarbon
has_exact_synonym: methanedione
has OBO namespace: chebi_ontology
has_related_synonym: CO2
has_related_synonym: E 290
has_related_synonym: E-290
has_related_synonym: E290
has_related_synonym: R-744
has_related_synonym: [CO2]
has_related_synonym: carbonic anhydride
id: CHEBI:16526
in_subset: 3 STAR

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: Beilstein:1900390
source: Beilstein

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: CAS:124-38-9
source: ChemIDplus

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: CAS:124-38-9
source: KEGG COMPOUND

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: CAS:124-38-9
source: NIST Chemistry WebBook

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: Drug_Central:4256
source: DrugCentral

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: Gmelin:989
source: Gmelin

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:10826146
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:11094503
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:11584085
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:11802652
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:14639145
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:15050588
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:16591971
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:16656478
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:16659660
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:17190796
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:17448243
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:17878298
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:17884085
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:19043767
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:19259576
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:19854893
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:23384758
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:23828359
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:24258718
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:8482095
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:8818713
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:8869828
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:9611769
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: PMID:9730350
source: Europe PMC

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: Reaxys:1900390
source: Reaxys

Axiom
annotated source: carbon dioxide
annotated property: database_cross_reference
annotated target: UM-BBD_compID:c0131
source: UM-BBD

Axiom
annotated source: carbon dioxide
annotated property: has_exact_synonym
annotated target: CARBON DIOXIDE
database_cross_reference: PDBeChem

Axiom
annotated source: carbon dioxide
annotated property: has_exact_synonym
annotated target: Carbon dioxide
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: carbon dioxide
annotated property: has_exact_synonym
annotated target: carbon dioxide
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbon dioxide
annotated property: has_exact_synonym
annotated target: dioxidocarbon
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbon dioxide
annotated property: has_exact_synonym
annotated target: methanedione
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbon dioxide
annotated property: has_related_synonym
annotated target: CO2
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: carbon dioxide
annotated property: has_related_synonym
annotated target: CO2
database_cross_reference: UniProt

Axiom
annotated source: carbon dioxide
annotated property: has_related_synonym
annotated target: E 290
database_cross_reference: ChEBI

Axiom
annotated source: carbon dioxide
annotated property: has_related_synonym
annotated target: E-290
database_cross_reference: ChEBI

Axiom
annotated source: carbon dioxide
annotated property: has_related_synonym
annotated target: E290
database_cross_reference: ChEBI

Axiom
annotated source: carbon dioxide
annotated property: has_related_synonym
annotated target: R-744
database_cross_reference: ChEBI

Axiom
annotated source: carbon dioxide
annotated property: has_related_synonym
annotated target: [CO2]
database_cross_reference: MolBase

Axiom
annotated source: carbon dioxide
annotated property: has_related_synonym
annotated target: carbonic anhydride
database_cross_reference: UM-BBD

protein polypeptide chain
type: Class
subclass of: polypeptide
subclass of: Restriction
  on property: has part
  some values from: proteinogenic amino-acid residue
definition: A naturally occurring polypeptide synthesized at the ribosome.
has alternative id: CHEBI:8526
database_cross_reference: KEGG:C00017
has OBO namespace: chebi_ontology
has_related_synonym: Protein
has_related_synonym: polypeptide chain
has_related_synonym: protein polypeptide chains
id: CHEBI:16541
in_subset: 3 STAR

Axiom
annotated source: protein polypeptide chain
annotated property: has_related_synonym
annotated target: Protein
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: protein polypeptide chain
annotated property: has_related_synonym
annotated target: polypeptide chain
database_cross_reference: ChEBI

Axiom
annotated source: protein polypeptide chain
annotated property: has_related_synonym
annotated target: protein polypeptide chains
database_cross_reference: ChEBI

carbohydrate
type: Class
subclass of: carbohydrates and carbohydrate derivatives
definition: Any member of the class of organooxygen compounds that is a polyhydroxy-aldehyde or -ketone or a lactol resulting from their intramolecular condensation (monosaccharides); substances derived from these by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom; and polymeric products arising by intermolecular acetal formation between two or more such molecules (disaccharides, polysaccharides and oligosaccharides). Carbohydrates contain only carbon, hydrogen and oxygen atoms; prior to any oxidation or reduction, most have the empirical formula Cm(H2O)n. Compounds obtained from carbohydrates by substitution, etc., are known as carbohydrate derivatives and may contain other elements. Cyclitols are generally not regarded as carbohydrates.
has alternative id: CHEBI:15131
has alternative id: CHEBI:23008
has alternative id: CHEBI:9318
database_cross_reference: Wikipedia:Carbohydrate
has_exact_synonym: carbohydrate
has_exact_synonym: carbohydrates
has OBO namespace: chebi_ontology
has_related_synonym: Kohlenhydrat
has_related_synonym: Kohlenhydrate
has_related_synonym: a carbohydrate
has_related_synonym: carbohidrato
has_related_synonym: carbohidratos
has_related_synonym: glucide
has_related_synonym: glucides
has_related_synonym: glucido
has_related_synonym: glucidos
has_related_synonym: hydrates de carbone
has_related_synonym: saccharide
has_related_synonym: saccharides
has_related_synonym: saccharidum
id: CHEBI:16646
in_subset: 3 STAR

Axiom
annotated source: carbohydrate
annotated property: has_exact_synonym
annotated target: carbohydrate
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbohydrate
annotated property: has_exact_synonym
annotated target: carbohydrates
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbohydrate
annotated property: has_related_synonym
annotated target: Kohlenhydrat
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate
annotated property: has_related_synonym
annotated target: Kohlenhydrate
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate
annotated property: has_related_synonym
annotated target: a carbohydrate
database_cross_reference: UniProt

Axiom
annotated source: carbohydrate
annotated property: has_related_synonym
annotated target: carbohidrato
database_cross_reference: IUPAC

Axiom
annotated source: carbohydrate
annotated property: has_related_synonym
annotated target: carbohidratos
database_cross_reference: IUPAC

Axiom
annotated source: carbohydrate
annotated property: has_related_synonym
annotated target: glucide
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate
annotated property: has_related_synonym
annotated target: glucides
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate
annotated property: has_related_synonym
annotated target: glucido
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate
annotated property: has_related_synonym
annotated target: glucidos
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate
annotated property: has_related_synonym
annotated target: hydrates de carbone
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate
annotated property: has_related_synonym
annotated target: saccharide
database_cross_reference: IUPAC

Axiom
annotated source: carbohydrate
annotated property: has_related_synonym
annotated target: saccharides
database_cross_reference: IUPAC

Axiom
annotated source: carbohydrate
annotated property: has_related_synonym
annotated target: saccharidum
database_cross_reference: ChEBI

peptide
type: Class
subclass of: carboxamide
subclass of: organic amino compound
subclass of: Restriction
  on property: has part
  some values from: amino-acid residue
subclass of: Restriction
  on property: is tautomer of
  some values from: peptide zwitterion
definition: Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid. X = OH, OR, NH2, NHR, etc.
charge: 0
formula: (C2H2NOR)nC2H3NOR
has alternative id: CHEBI:14753
has alternative id: CHEBI:25906
has alternative id: CHEBI:7990
database_cross_reference: KEGG:C00012
has_exact_synonym: Peptide
has_exact_synonym: peptides
has OBO namespace: chebi_ontology
has_related_synonym: Peptid
has_related_synonym: peptido
has_related_synonym: peptidos
id: CHEBI:16670
in_subset: 3 STAR

Axiom
annotated source: peptide
annotated property: has_exact_synonym
annotated target: Peptide
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: peptide
annotated property: has_exact_synonym
annotated target: peptides
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: peptide
annotated property: has_related_synonym
annotated target: Peptid
database_cross_reference: ChEBI

Axiom
annotated source: peptide
annotated property: has_related_synonym
annotated target: peptido
database_cross_reference: ChEBI

Axiom
annotated source: peptide
annotated property: has_related_synonym
annotated target: peptidos
database_cross_reference: ChEBI

noradrenaline(1+)
type: Class
subclass of: organic cation
subclass of: ammonium ion derivative
subclass of: Restriction
  on property: is conjugate acid of
  some values from: noradrenaline
charge: +1
formula: C8H12NO3
inchi: InChI=1S/C8H11NO3/c9-4-8(12)5-1-2-6(10)7(11)3-5/h1-3,8,10-12H,4,9H2/p+1
inchikey: SFLSHLFXELFNJZ-UHFFFAOYSA-O
mass: 170.187
monoisotopicmass: 170.08117
smiles: C1=CC(=CC(=C1O)O)C(C[NH3+])O
has OBO namespace: chebi_ontology
has_related_synonym: noradrenaline
id: CHEBI:166902
in_subset: 2 STAR

Axiom
annotated source: noradrenaline(1+)
annotated property: has_related_synonym
annotated target: noradrenaline
database_cross_reference: UniProt

glycan
type: Class
subclass of: carbohydrates and carbohydrate derivatives
definition: Any oligosaccharide, polysaccharide or their derivatives consisting of monosaccharides or monosaccharide derivatives linked by glycosidic bonds. See also http://www.ontobee.org/ontology/GNO?iri=http://purl.obolibrary.org/obo/GNO_00000001.
has OBO namespace: chebi_ontology
has_related_synonym: glycans
id: CHEBI:167559
in_subset: 3 STAR

Axiom
annotated source: glycan
annotated property: has_related_synonym
annotated target: glycans
database_cross_reference: ChEBI

tryptamine
type: Class
subclass of: tryptamines
subclass of: aminoalkylindole
subclass of: indole alkaloid
subclass of: aralkylamino compound
subclass of: Restriction
  on property: has role
  some values from: mouse metabolite
subclass of: Restriction
  on property: has role
  some values from: plant metabolite
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: is conjugate base of
  some values from: tryptaminium
definition: An aminoalkylindole consisting of indole having a 2-aminoethyl group at the 3-position.
charge: 0
formula: C10H12N2
inchi: InChI=1S/C10H12N2/c11-6-5-8-7-12-10-4-2-1-3-9(8)10/h1-4,7,12H,5-6,11H2
inchikey: APJYDQYYACXCRM-UHFFFAOYSA-N
mass: 160.21570
monoisotopicmass: 160.10005
smiles: NCCc1c[nH]c2ccccc12
has alternative id: CHEBI:15274
has alternative id: CHEBI:27161
has alternative id: CHEBI:46157
has alternative id: CHEBI:9767
database_cross_reference: Beilstein:125513
database_cross_reference: CAS:61-54-1
database_cross_reference: DrugBank:DB08653
database_cross_reference: Gmelin:603448
database_cross_reference: HMDB:HMDB0000303
database_cross_reference: KEGG:C00398
database_cross_reference: KNApSAcK:C00001434
database_cross_reference: MetaCyc:TRYPTAMINE
database_cross_reference: PDBeChem:TSS
database_cross_reference: PMID:16126914
database_cross_reference: PMID:22770225
database_cross_reference: PMID:24345948
database_cross_reference: PMID:24558969
database_cross_reference: Reaxys:125513
database_cross_reference: Wikipedia:Tryptamine
has_exact_synonym: 2-(1H-indol-3-yl)ethanamine
has_exact_synonym: Tryptamine
has OBO namespace: chebi_ontology
has_related_synonym: 1H-indole-3-ethanamine
has_related_synonym: 2-(1H-INDOL-3-YL)ETHANAMINE
has_related_synonym: 2-(3-indolyl)ethylamine
has_related_synonym: 3-(2-Aminoethyl)indole
id: CHEBI:16765
in_subset: 3 STAR

Axiom
annotated source: tryptamine
annotated property: database_cross_reference
annotated target: Beilstein:125513
source: Beilstein

Axiom
annotated source: tryptamine
annotated property: database_cross_reference
annotated target: CAS:61-54-1
source: ChemIDplus

Axiom
annotated source: tryptamine
annotated property: database_cross_reference
annotated target: CAS:61-54-1
source: KEGG COMPOUND

Axiom
annotated source: tryptamine
annotated property: database_cross_reference
annotated target: CAS:61-54-1
source: NIST Chemistry WebBook

Axiom
annotated source: tryptamine
annotated property: database_cross_reference
annotated target: Gmelin:603448
source: Gmelin

Axiom
annotated source: tryptamine
annotated property: database_cross_reference
annotated target: PMID:16126914
source: Europe PMC

Axiom
annotated source: tryptamine
annotated property: database_cross_reference
annotated target: PMID:22770225
source: Europe PMC

Axiom
annotated source: tryptamine
annotated property: database_cross_reference
annotated target: PMID:24345948
source: Europe PMC

Axiom
annotated source: tryptamine
annotated property: database_cross_reference
annotated target: PMID:24558969
source: Europe PMC

Axiom
annotated source: tryptamine
annotated property: database_cross_reference
annotated target: Reaxys:125513
source: Reaxys

Axiom
annotated source: tryptamine
annotated property: has_exact_synonym
annotated target: 2-(1H-indol-3-yl)ethanamine
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: tryptamine
annotated property: has_exact_synonym
annotated target: Tryptamine
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: tryptamine
annotated property: has_related_synonym
annotated target: 1H-indole-3-ethanamine
database_cross_reference: NIST_Chemistry_WebBook

Axiom
annotated source: tryptamine
annotated property: has_related_synonym
annotated target: 2-(1H-INDOL-3-YL)ETHANAMINE
database_cross_reference: PDBeChem

Axiom
annotated source: tryptamine
annotated property: has_related_synonym
annotated target: 2-(3-indolyl)ethylamine
database_cross_reference: ChemIDplus

Axiom
annotated source: tryptamine
annotated property: has_related_synonym
annotated target: 3-(2-Aminoethyl)indole
database_cross_reference: KEGG_COMPOUND

chlorophyllide a
type: Class
subclass of: methyl ester
subclass of: dicarboxylic acid monoester
subclass of: chlorophyllide
subclass of: Restriction
  on property: is conjugate acid of
  some values from: chlorophyllide a(1-)
charge: 0
formula: C35H34MgN4O5
inchi: InChI=1S/C35H36N4O5.Mg/c1-8-19-15(3)22-12-24-17(5)21(10-11-28(40)41)32(38-24)30-31(35(43)44-7)34(42)29-18(6)25(39-33(29)30)14-27-20(9-2)16(4)23(37-27)13-26(19)36-22;/h8,12-14,17,21,31H,1,9-11H2,2-7H3,(H3,36,37,38,39,40,41,42);/q;+2/p-2/t17-,21-,31+;/m0./s1
inchikey: ANWUQYTXRXCEMZ-NYABAGMLSA-L
mass: 614.97300
monoisotopicmass: 614.23796
has alternative id: CHEBI:13976
has alternative id: CHEBI:13977
has alternative id: CHEBI:23159
has alternative id: CHEBI:3633
database_cross_reference: Beilstein:5801116
database_cross_reference: CAS:14897-06-4
database_cross_reference: KEGG:C02139
database_cross_reference: KNApSAcK:C00007316
has_exact_synonym: Chlorophyllide a
has OBO namespace: chebi_ontology
has_related_synonym: Chlorophyllid a
id: CHEBI:16900
in_subset: 3 STAR

Axiom
annotated source: chlorophyllide a
annotated property: database_cross_reference
annotated target: Beilstein:5801116
source: Beilstein

Axiom
annotated source: chlorophyllide a
annotated property: database_cross_reference
annotated target: CAS:14897-06-4
source: ChemIDplus

Axiom
annotated source: chlorophyllide a
annotated property: database_cross_reference
annotated target: CAS:14897-06-4
source: KEGG COMPOUND

Axiom
annotated source: chlorophyllide a
annotated property: has_exact_synonym
annotated target: Chlorophyllide a
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: chlorophyllide a
annotated property: has_related_synonym
annotated target: Chlorophyllid a
database_cross_reference: ChEBI

deoxyribonucleic acid
type: Class
subclass of: nucleic acid
subclass of: Restriction
  on property: has part
  some values from: canonical deoxyribonucleoside residue
subclass of: Restriction
  on property: has part
  some values from: canonical deoxyribonucleotide residue
subclass of: Restriction
  on property: has role
  some values from: mouse metabolite
subclass of: Restriction
  on property: has role
  some values from: human metabolite
definition: High molecular weight, linear polymers, composed of nucleotides containing deoxyribose and linked by phosphodiester bonds; DNA contain the genetic information of organisms.
has alternative id: CHEBI:13302
has alternative id: CHEBI:21123
has alternative id: CHEBI:33698
has alternative id: CHEBI:4291
database_cross_reference: CAS:9007-49-2
database_cross_reference: KEGG:C00039
has_exact_synonym: Deoxyribonucleic acid
has_exact_synonym: deoxyribonucleic acids
has OBO namespace: chebi_ontology
has_related_synonym: (Deoxyribonucleotide)m
has_related_synonym: (Deoxyribonucleotide)n
has_related_synonym: (Deoxyribonucleotide)n+m
has_related_synonym: DNA
has_related_synonym: DNAn
has_related_synonym: DNAn+1
has_related_synonym: DNS
has_related_synonym: Desoxyribonukleinsaeure
has_related_synonym: deoxyribonucleic acids
has_related_synonym: desoxyribose nucleic acid
has_related_synonym: thymus nucleic acid
id: CHEBI:16991
in_subset: 3 STAR

Axiom
annotated source: deoxyribonucleic acid
annotated property: database_cross_reference
annotated target: CAS:9007-49-2
source: ChemIDplus

Axiom
annotated source: deoxyribonucleic acid
annotated property: database_cross_reference
annotated target: CAS:9007-49-2
source: KEGG COMPOUND

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_exact_synonym
annotated target: Deoxyribonucleic acid
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_exact_synonym
annotated target: deoxyribonucleic acids
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_related_synonym
annotated target: (Deoxyribonucleotide)m
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_related_synonym
annotated target: (Deoxyribonucleotide)n
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_related_synonym
annotated target: (Deoxyribonucleotide)n+m
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_related_synonym
annotated target: DNA
database_cross_reference: IUPAC

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_related_synonym
annotated target: DNA
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_related_synonym
annotated target: DNAn
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_related_synonym
annotated target: DNAn+1
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_related_synonym
annotated target: DNS
database_cross_reference: ChEBI

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_related_synonym
annotated target: Desoxyribonukleinsaeure
database_cross_reference: ChEBI

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_related_synonym
annotated target: deoxyribonucleic acids
database_cross_reference: ChEBI

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_related_synonym
annotated target: desoxyribose nucleic acid
database_cross_reference: ChemIDplus

Axiom
annotated source: deoxyribonucleic acid
annotated property: has_related_synonym
annotated target: thymus nucleic acid
database_cross_reference: ChEBI

ketone
type: Class
subclass of: carbonyl compound
definition: A compound in which a carbonyl group is bonded to two carbon atoms: R2C=O (neither R may be H).
charge: 0
formula: COR2
mass: 28.010
monoisotopicmass: 27.99491
smiles: [*]C([*])=O
has alternative id: CHEBI:13427
has alternative id: CHEBI:13646
has alternative id: CHEBI:24974
has alternative id: CHEBI:6127
has alternative id: CHEBI:8742
database_cross_reference: KEGG:C01450
database_cross_reference: Wikipedia:Ketone
has_exact_synonym: Ketone
has_exact_synonym: ketones
has OBO namespace: chebi_ontology
has_related_synonym: Keton
has_related_synonym: R-CO-R'
has_related_synonym: a ketone
has_related_synonym: cetone
has_related_synonym: ketones
id: CHEBI:17087
in_subset: 3 STAR

Axiom
annotated source: ketone
annotated property: has_exact_synonym
annotated target: Ketone
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: ketone
annotated property: has_exact_synonym
annotated target: ketones
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ketone
annotated property: has_related_synonym
annotated target: Keton
database_cross_reference: ChEBI

Axiom
annotated source: ketone
annotated property: has_related_synonym
annotated target: R-CO-R'
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: ketone
annotated property: has_related_synonym
annotated target: a ketone
database_cross_reference: UniProt

Axiom
annotated source: ketone
annotated property: has_related_synonym
annotated target: cetone
database_cross_reference: ChEBI

Axiom
annotated source: ketone
annotated property: has_related_synonym
annotated target: ketones
database_cross_reference: ChEBI

glycoprotein
type: Class
subclass of: conjugated protein
subclass of: carbohydrate derivative
definition: A compound in which a carbohydrate component is covalently bound to a protein component.
has alternative id: CHEBI:14349
has alternative id: CHEBI:5481
has alternative id: CHEBI:5493
database_cross_reference: KEGG:C00326
has_exact_synonym: Glycoprotein
has_exact_synonym: glycoproteins
has OBO namespace: chebi_ontology
has_related_synonym: Glykoprotein
has_related_synonym: Glykoproteine
has_related_synonym: glicoproteina
has_related_synonym: glicoproteinas
has_related_synonym: glycoproteine
has_related_synonym: glycoproteines
id: CHEBI:17089
in_subset: 3 STAR

Axiom
annotated source: glycoprotein
annotated property: has_exact_synonym
annotated target: Glycoprotein
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: glycoprotein
annotated property: has_exact_synonym
annotated target: glycoproteins
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: glycoprotein
annotated property: has_related_synonym
annotated target: Glykoprotein
database_cross_reference: ChEBI

Axiom
annotated source: glycoprotein
annotated property: has_related_synonym
annotated target: Glykoproteine
database_cross_reference: ChEBI

Axiom
annotated source: glycoprotein
annotated property: has_related_synonym
annotated target: glicoproteina
database_cross_reference: ChEBI

Axiom
annotated source: glycoprotein
annotated property: has_related_synonym
annotated target: glicoproteinas
database_cross_reference: ChEBI

Axiom
annotated source: glycoprotein
annotated property: has_related_synonym
annotated target: glycoproteine
database_cross_reference: ChEBI

Axiom
annotated source: glycoprotein
annotated property: has_related_synonym
annotated target: glycoproteines
database_cross_reference: ChEBI

carbon monoxide
type: Class
subclass of: gas molecular entity
subclass of: carbon oxide
subclass of: one-carbon compound
subclass of: Restriction
  on property: has role
  some values from: neurotransmitter
subclass of: Restriction
  on property: has role
  some values from: vasodilator agent
subclass of: Restriction
  on property: has role
  some values from: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
subclass of: Restriction
  on property: has role
  some values from: P450 inhibitor
subclass of: Restriction
  on property: has role
  some values from: probe
subclass of: Restriction
  on property: has role
  some values from: neurotoxin
subclass of: Restriction
  on property: has role
  some values from: ligand
subclass of: Restriction
  on property: has role
  some values from: biomarker
subclass of: Restriction
  on property: has role
  some values from: signalling molecule
subclass of: Restriction
  on property: has role
  some values from: mouse metabolite
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: is conjugate base of
  some values from: carbon monoxide(1+)
definition: A one-carbon compound in which the carbon is joined only to a single oxygen. It is a colourless, odourless, tasteless, toxic gas.
charge: 0
formula: CO
inchi: InChI=1S/CO/c1-2
inchikey: UGFAIRIUMAVXCW-UHFFFAOYSA-N
mass: 28.01010
monoisotopicmass: 27.99491
smiles: [C-]#[O+]
has alternative id: CHEBI:13281
has alternative id: CHEBI:23013
has alternative id: CHEBI:3282
has alternative id: CHEBI:41526
database_cross_reference: Beilstein:1900508
database_cross_reference: Beilstein:3535285
database_cross_reference: Beilstein:3587264
database_cross_reference: CAS:630-08-0
database_cross_reference: Gmelin:421
database_cross_reference: HMDB:HMDB0001361
database_cross_reference: KEGG:C00237
database_cross_reference: KEGG:D09706
database_cross_reference: MetaCyc:CARBON-MONOXIDE
database_cross_reference: MolBase:753
database_cross_reference: PDBeChem:CMO
database_cross_reference: PMID:10085152
database_cross_reference: PMID:10679539
database_cross_reference: PMID:11572959
database_cross_reference: PMID:14527438
database_cross_reference: PMID:14563665
database_cross_reference: PMID:15127883
database_cross_reference: PMID:15598489
database_cross_reference: PMID:16371440
database_cross_reference: PMID:16520836
database_cross_reference: PMID:17041734
database_cross_reference: PMID:18094356
database_cross_reference: PMID:19909254
database_cross_reference: PMID:23762709
database_cross_reference: PMID:7022476
database_cross_reference: PMID:8240252
database_cross_reference: PMID:8620577
database_cross_reference: UM-BBD_compID:c0369
database_cross_reference: Wikipedia:Carbon_monoxide
has_exact_synonym: CARBON MONOXIDE
has_exact_synonym: Carbon monoxide
has_exact_synonym: carbon monooxide
has_exact_synonym: carbon monoxide
has_exact_synonym: carbon(II) oxide
has OBO namespace: chebi_ontology
has_related_synonym: C#O
has_related_synonym: CO
has_related_synonym: [CO]
id: CHEBI:17245
in_subset: 3 STAR

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: Beilstein:1900508
source: Beilstein

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: Beilstein:3535285
source: Beilstein

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: Beilstein:3587264
source: Beilstein

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: CAS:630-08-0
source: ChemIDplus

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: CAS:630-08-0
source: KEGG COMPOUND

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: CAS:630-08-0
source: NIST Chemistry WebBook

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: Gmelin:421
source: Gmelin

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:10085152
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:10679539
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:11572959
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:14527438
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:14563665
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:15127883
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:15598489
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:16371440
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:16520836
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:17041734
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:18094356
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:19909254
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:23762709
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:7022476
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:8240252
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: PMID:8620577
source: Europe PMC

Axiom
annotated source: carbon monoxide
annotated property: database_cross_reference
annotated target: UM-BBD_compID:c0369
source: UM-BBD

Axiom
annotated source: carbon monoxide
annotated property: has_exact_synonym
annotated target: CARBON MONOXIDE
database_cross_reference: PDBeChem

Axiom
annotated source: carbon monoxide
annotated property: has_exact_synonym
annotated target: Carbon monoxide
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: carbon monoxide
annotated property: has_exact_synonym
annotated target: carbon monooxide
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbon monoxide
annotated property: has_exact_synonym
annotated target: carbon monoxide
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbon monoxide
annotated property: has_exact_synonym
annotated target: carbon(II) oxide
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbon monoxide
annotated property: has_related_synonym
annotated target: C#O
database_cross_reference: ChEBI

Axiom
annotated source: carbon monoxide
annotated property: has_related_synonym
annotated target: CO
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: carbon monoxide
annotated property: has_related_synonym
annotated target: CO
database_cross_reference: UniProt

Axiom
annotated source: carbon monoxide
annotated property: has_related_synonym
annotated target: [CO]
database_cross_reference: MolBase

nitrate
type: Class
subclass of: nitrogen oxoanion
subclass of: reactive nitrogen species
subclass of: monovalent inorganic anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: nitric acid
definition: A nitrogen oxoanion formed by loss of a proton from nitric acid. Principal species present at pH 7.3.
charge: -1
formula: NO3
inchi: InChI=1S/NO3/c2-1(3)4/q-1
inchikey: NHNBFGGVMKEFGY-UHFFFAOYSA-N
mass: 62.00490
monoisotopicmass: 61.98837
smiles: [O-][N+]([O-])=O
has alternative id: CHEBI:14654
has alternative id: CHEBI:44487
has alternative id: CHEBI:71263
database_cross_reference: Beilstein:3587575
database_cross_reference: CAS:14797-55-8
database_cross_reference: Gmelin:1574
database_cross_reference: MetaCyc:NITRATE
database_cross_reference: PDBeChem:NO3
database_cross_reference: Wikipedia:Nitrate
has_exact_synonym: nitrate
has_exact_synonym: trioxidonitrate(1-)
has_exact_synonym: trioxonitrate(1-)
has_exact_synonym: trioxonitrate(V)
has OBO namespace: chebi_ontology
has_related_synonym: NITRATE ION
has_related_synonym: NO3
has_related_synonym: NO3(-)
has_related_synonym: [NO3](-)
has_related_synonym: nitrate(1-)
id: CHEBI:17632
in_subset: 3 STAR

Axiom
annotated source: nitrate
annotated property: database_cross_reference
annotated target: Beilstein:3587575
source: Beilstein

Axiom
annotated source: nitrate
annotated property: database_cross_reference
annotated target: CAS:14797-55-8
source: ChemIDplus

Axiom
annotated source: nitrate
annotated property: database_cross_reference
annotated target: CAS:14797-55-8
source: NIST Chemistry WebBook

Axiom
annotated source: nitrate
annotated property: database_cross_reference
annotated target: Gmelin:1574
source: Gmelin

Axiom
annotated source: nitrate
annotated property: database_cross_reference
annotated target: MetaCyc:NITRATE
source: SUBMITTER

Axiom
annotated source: nitrate
annotated property: has_exact_synonym
annotated target: nitrate
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nitrate
annotated property: has_exact_synonym
annotated target: nitrate
database_cross_reference: UniProt

Axiom
annotated source: nitrate
annotated property: has_exact_synonym
annotated target: trioxidonitrate(1-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nitrate
annotated property: has_exact_synonym
annotated target: trioxonitrate(1-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nitrate
annotated property: has_exact_synonym
annotated target: trioxonitrate(V)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nitrate
annotated property: has_related_synonym
annotated target: NITRATE ION
database_cross_reference: PDBeChem

Axiom
annotated source: nitrate
annotated property: has_related_synonym
annotated target: NO3
database_cross_reference: ChEBI

Axiom
annotated source: nitrate
annotated property: has_related_synonym
annotated target: NO3(-)
database_cross_reference: IUPAC

Axiom
annotated source: nitrate
annotated property: has_related_synonym
annotated target: [NO3](-)
database_cross_reference: IUPAC

Axiom
annotated source: nitrate
annotated property: has_related_synonym
annotated target: nitrate(1-)
database_cross_reference: ChemIDplus

methanol
type: Class
subclass of: volatile organic compound
subclass of: primary alcohol
subclass of: alkyl alcohol
subclass of: one-carbon compound
subclass of: Restriction
  on property: has role
  some values from: Mycoplasma genitalium metabolite
subclass of: Restriction
  on property: has role
  some values from: fuel
subclass of: Restriction
  on property: has role
  some values from: amphiprotic solvent
subclass of: Restriction
  on property: has role
  some values from: mouse metabolite
subclass of: Restriction
  on property: has role
  some values from: Escherichia coli metabolite
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: is conjugate acid of
  some values from: methoxide
definition: The primary alcohol that is the simplest aliphatic alcohol, comprising a methyl and an alcohol group.
charge: 0
formula: CH4O
inchi: InChI=1S/CH4O/c1-2/h2H,1H3
inchikey: OKKJLVBELUTLKV-UHFFFAOYSA-N
mass: 32.04186
monoisotopicmass: 32.02621
smiles: CO
has alternative id: CHEBI:14588
has alternative id: CHEBI:25227
has alternative id: CHEBI:44080
has alternative id: CHEBI:44553
has alternative id: CHEBI:6816
database_cross_reference: Beilstein:1098229
database_cross_reference: CAS:67-56-1
database_cross_reference: Gmelin:449
database_cross_reference: HMDB:HMDB0001875
database_cross_reference: KEGG:C00132
database_cross_reference: KEGG:D02309
database_cross_reference: MetaCyc:METOH
database_cross_reference: PDBeChem:MOH
database_cross_reference: PMID:11141607
database_cross_reference: PMID:11430978
database_cross_reference: PMID:11489599
database_cross_reference: PMID:11680737
database_cross_reference: PMID:11684179
database_cross_reference: PMID:14012711
database_cross_reference: PMID:14678513
database_cross_reference: PMID:14760634
database_cross_reference: PMID:15172721
database_cross_reference: PMID:15906011
database_cross_reference: PMID:16705261
database_cross_reference: PMID:17451998
database_cross_reference: PMID:17733096
database_cross_reference: PMID:19064074
database_cross_reference: PMID:19850112
database_cross_reference: PMID:20314698
database_cross_reference: Reaxys:1098229
database_cross_reference: UM-BBD_compID:c0132
database_cross_reference: Wikipedia:Methanol
has_exact_synonym: METHANOL
has_exact_synonym: Methanol
has_exact_synonym: methanol
has OBO namespace: chebi_ontology
has_related_synonym: CH3OH
has_related_synonym: MeOH
has_related_synonym: Methyl alcohol
has_related_synonym: Methylalkohol
has_related_synonym: carbinol
has_related_synonym: spirit of wood
has_related_synonym: wood alcohol
has_related_synonym: wood naphtha
has_related_synonym: wood spirit
id: CHEBI:17790
in_subset: 3 STAR

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: Beilstein:1098229
source: Beilstein

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: CAS:67-56-1
source: ChemIDplus

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: CAS:67-56-1
source: KEGG COMPOUND

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: CAS:67-56-1
source: NIST Chemistry WebBook

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: Gmelin:449
source: Gmelin

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:11141607
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:11430978
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:11489599
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:11680737
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:11684179
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:14012711
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:14678513
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:14760634
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:15172721
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:15906011
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:16705261
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:17451998
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:17733096
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:19064074
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:19850112
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: PMID:20314698
source: Europe PMC

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: Reaxys:1098229
source: Reaxys

Axiom
annotated source: methanol
annotated property: database_cross_reference
annotated target: UM-BBD_compID:c0132
source: UM-BBD

Axiom
annotated source: methanol
annotated property: has_exact_synonym
annotated target: METHANOL
database_cross_reference: PDBeChem

Axiom
annotated source: methanol
annotated property: has_exact_synonym
annotated target: Methanol
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: methanol
annotated property: has_exact_synonym
annotated target: methanol
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: methanol
annotated property: has_exact_synonym
annotated target: methanol
database_cross_reference: UniProt

Axiom
annotated source: methanol
annotated property: has_related_synonym
annotated target: CH3OH
database_cross_reference: ChEBI

Axiom
annotated source: methanol
annotated property: has_related_synonym
annotated target: MeOH
database_cross_reference: ChEBI

Axiom
annotated source: methanol
annotated property: has_related_synonym
annotated target: Methyl alcohol
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: methanol
annotated property: has_related_synonym
annotated target: Methylalkohol
database_cross_reference: NIST_Chemistry_WebBook

Axiom
annotated source: methanol
annotated property: has_related_synonym
annotated target: carbinol
database_cross_reference: ChemIDplus

Axiom
annotated source: methanol
annotated property: has_related_synonym
annotated target: spirit of wood
database_cross_reference: HMDB

Axiom
annotated source: methanol
annotated property: has_related_synonym
annotated target: wood alcohol
database_cross_reference: ChemIDplus

Axiom
annotated source: methanol
annotated property: has_related_synonym
annotated target: wood naphtha
database_cross_reference: ChemIDplus

Axiom
annotated source: methanol
annotated property: has_related_synonym
annotated target: wood spirit
database_cross_reference: NIST_Chemistry_WebBook

donor
type: Class
subclass of: chemical role
definition: A molecular entity that can transfer ("donate") an electron, a pair of electrons, an atom or a group to another molecular entity.
has alternative id: CHEBI:14202
has alternative id: CHEBI:4697
database_cross_reference: KEGG:C01351
has_exact_synonym: Donor
has OBO namespace: chebi_ontology
has_related_synonym: Donator
has_related_synonym: donneur
id: CHEBI:17891
in_subset: 3 STAR

Axiom
annotated source: donor
annotated property: has_exact_synonym
annotated target: Donor
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: donor
annotated property: has_related_synonym
annotated target: Donator
database_cross_reference: ChEBI

Axiom
annotated source: donor
annotated property: has_related_synonym
annotated target: donneur
database_cross_reference: ChEBI

lipid
type: Class
subclass of: organic molecular entity
definition: 'Lipids' is a loosely defined term for substances of biological origin that are soluble in nonpolar solvents. They consist of saponifiable lipids, such as glycerides (fats and oils) and phospholipids, as well as nonsaponifiable lipids, principally steroids.
has alternative id: CHEBI:14517
has alternative id: CHEBI:25054
has alternative id: CHEBI:6486
database_cross_reference: KEGG:C01356
has_exact_synonym: Lipid
has_exact_synonym: lipids
has OBO namespace: chebi_ontology
id: CHEBI:18059
in_subset: 3 STAR

Axiom
annotated source: lipid
annotated property: has_exact_synonym
annotated target: Lipid
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: lipid
annotated property: has_exact_synonym
annotated target: lipids
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

glycosaminoglycan
type: Class
subclass of: aminoglycan
definition: Any polysaccharide containing a substantial proportion of aminomonosaccharide residues.
has alternative id: CHEBI:14361
has alternative id: CHEBI:24398
has alternative id: CHEBI:5495
database_cross_reference: KEGG:C02545
database_cross_reference: Wikipedia:Glycosaminoglycan
has_exact_synonym: Glycosaminoglycan
has_exact_synonym: glycosaminoglycan
has OBO namespace: chebi_ontology
has_related_synonym: Glykosaminoglykan
has_related_synonym: glicosaminoglicano
has_related_synonym: glycosaminoglycane
has_related_synonym: glycosaminoglycans
id: CHEBI:18085
in_subset: 3 STAR

Axiom
annotated source: glycosaminoglycan
annotated property: has_exact_synonym
annotated target: Glycosaminoglycan
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: glycosaminoglycan
annotated property: has_exact_synonym
annotated target: glycosaminoglycan
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: glycosaminoglycan
annotated property: has_related_synonym
annotated target: Glykosaminoglykan
database_cross_reference: ChEBI

Axiom
annotated source: glycosaminoglycan
annotated property: has_related_synonym
annotated target: glicosaminoglicano
database_cross_reference: IUPAC

Axiom
annotated source: glycosaminoglycan
annotated property: has_related_synonym
annotated target: glycosaminoglycane
database_cross_reference: IUPAC

Axiom
annotated source: glycosaminoglycan
annotated property: has_related_synonym
annotated target: glycosaminoglycans
database_cross_reference: ChEBI

polysaccharide
type: Class
subclass of: carbohydrate
subclass of: glycan
subclass of: biomacromolecule
definition: A biomacromolecule consisting of large numbers of monosaccharide residues linked glycosidically. This term is commonly used only for those containing more than ten monosaccharide residues.
has alternative id: CHEBI:14864
has alternative id: CHEBI:26205
has alternative id: CHEBI:8322
database_cross_reference: KEGG:C00420
has_exact_synonym: Polysaccharide
has_exact_synonym: polysaccharides
has OBO namespace: chebi_ontology
has_related_synonym: Glycan
has_related_synonym: Glycane
has_related_synonym: Glykan
has_related_synonym: Glykane
has_related_synonym: glycans
has_related_synonym: polisacarido
has_related_synonym: polisacaridos
id: CHEBI:18154
in_subset: 3 STAR

Axiom
annotated source: polysaccharide
annotated property: has_exact_synonym
annotated target: Polysaccharide
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: polysaccharide
annotated property: has_exact_synonym
annotated target: polysaccharides
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: polysaccharide
annotated property: has_related_synonym
annotated target: Glycan
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: polysaccharide
annotated property: has_related_synonym
annotated target: Glycane
database_cross_reference: ChEBI

Axiom
annotated source: polysaccharide
annotated property: has_related_synonym
annotated target: Glykan
database_cross_reference: ChEBI

Axiom
annotated source: polysaccharide
annotated property: has_related_synonym
annotated target: Glykane
database_cross_reference: ChEBI

Axiom
annotated source: polysaccharide
annotated property: has_related_synonym
annotated target: glycans
database_cross_reference: IUPAC

Axiom
annotated source: polysaccharide
annotated property: has_related_synonym
annotated target: polisacarido
database_cross_reference: ChEBI

Axiom
annotated source: polysaccharide
annotated property: has_related_synonym
annotated target: polisacaridos
database_cross_reference: IUPAC

chlorophyll a
type: Class
subclass of: methyl ester
subclass of: chlorophyll
subclass of: Restriction
  on property: has functional parent
  some values from: chlorophyllide a
subclass of: Restriction
  on property: is conjugate acid of
  some values from: chlorophyll a(1-)
charge: 0
formula: C55H72MgN4O5
inchi: InChI=1S/C55H73N4O5.Mg/c1-13-39-35(8)42-28-44-37(10)41(24-25-48(60)64-27-26-34(7)23-17-22-33(6)21-16-20-32(5)19-15-18-31(3)4)52(58-44)50-51(55(62)63-12)54(61)49-38(11)45(59-53(49)50)30-47-40(14-2)36(9)43(57-47)29-46(39)56-42;/h13,26,28-33,37,41,51H,1,14-25,27H2,2-12H3,(H-,56,57,58,59,61);/q-1;+2/p-1/b34-26+;/t32-,33-,37+,41+,51-;/m1./s1
inchikey: ATNHDLDRLWWWCB-AENOIHSZSA-M
mass: 893.48900
monoisotopicmass: 892.53531
has alternative id: CHEBI:13974
has alternative id: CHEBI:23157
has alternative id: CHEBI:3631
has alternative id: CHEBI:48807
database_cross_reference: Beilstein:1208847
database_cross_reference: Beilstein:4651978
database_cross_reference: CAS:479-61-8
database_cross_reference: COMe:MOL000003
database_cross_reference: DrugBank:DB02133
database_cross_reference: Gmelin:475109
database_cross_reference: KEGG:C05306
database_cross_reference: KNApSAcK:C00001528
database_cross_reference: PDBeChem:CLA
has_exact_synonym: CHLOROPHYLL A
has_exact_synonym: Chlorophyll a
has_exact_synonym: [(2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-yl (2(2)R,17S,18S)-7-ethyl-2(1),2(2),17,18-tetrahydro-2(2)-(methoxycarbonyl)-3,8,13,17-tetramethyl-2(1)-oxo-12-ethenylcyclopenta[at]porphyrin-18-propanoato(2-)]magnesium
has OBO namespace: chebi_ontology
has_related_synonym: (SP-4-2)-((2E,7R,11R)-3,7,11,15-tetramethyl-2-hexadecenyl (3S,4S,21R)-9-ethenyl-14-ethyl-21-(methoxycarbonyl)-4,8,13,18-tetramethyl-20-oxo-3-phorbinepropanoato(2-)-kappaN(23),kappaN(24),kappaN(25),kappaN(26))-magnesium
has_related_synonym: Chlorophyll
id: CHEBI:18230
in_subset: 3 STAR

Axiom
annotated source: chlorophyll a
annotated property: database_cross_reference
annotated target: Beilstein:1208847
source: Beilstein

Axiom
annotated source: chlorophyll a
annotated property: database_cross_reference
annotated target: Beilstein:4651978
source: Beilstein

Axiom
annotated source: chlorophyll a
annotated property: database_cross_reference
annotated target: CAS:479-61-8
source: ChemIDplus

Axiom
annotated source: chlorophyll a
annotated property: database_cross_reference
annotated target: CAS:479-61-8
source: KEGG COMPOUND

Axiom
annotated source: chlorophyll a
annotated property: database_cross_reference
annotated target: Gmelin:475109
source: Gmelin

Axiom
annotated source: chlorophyll a
annotated property: has_exact_synonym
annotated target: CHLOROPHYLL A
database_cross_reference: PDBeChem

Axiom
annotated source: chlorophyll a
annotated property: has_exact_synonym
annotated target: Chlorophyll a
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: chlorophyll a
annotated property: has_exact_synonym
annotated target: [(2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-yl (2(2)R,17S,18S)-7-ethyl-2(1),2(2),17,18-tetrahydro-2(2)-(methoxycarbonyl)-3,8,13,17-tetramethyl-2(1)-oxo-12-ethenylcyclopenta[at]porphyrin-18-propanoato(2-)]magnesium
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: chlorophyll a
annotated property: has_related_synonym
annotated target: (SP-4-2)-((2E,7R,11R)-3,7,11,15-tetramethyl-2-hexadecenyl (3S,4S,21R)-9-ethenyl-14-ethyl-21-(methoxycarbonyl)-4,8,13,18-tetramethyl-20-oxo-3-phorbinepropanoato(2-)-kappaN(23),kappaN(24),kappaN(25),kappaN(26))-magnesium
database_cross_reference: ChemIDplus

Axiom
annotated source: chlorophyll a
annotated property: has_related_synonym
annotated target: Chlorophyll
database_cross_reference: ChemIDplus

nucleobase
type: Class
subclass of: organonitrogen heterocyclic compound
definition: That part of DNA or RNA that may be involved in pairing.
has alternative id: CHEBI:13873
has alternative id: CHEBI:25598
has alternative id: CHEBI:2995
database_cross_reference: KEGG:C00701
database_cross_reference: Wikipedia:Nucleobase
has OBO namespace: chebi_ontology
has_related_synonym: Base
has_related_synonym: nucleobases
id: CHEBI:18282
in_subset: 3 STAR

Axiom
annotated source: nucleobase
annotated property: has_related_synonym
annotated target: Base
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: nucleobase
annotated property: has_related_synonym
annotated target: nucleobases
database_cross_reference: ChEBI

alkane
type: Class
subclass of: hydrocarbon
subclass of: aliphatic compound
definition: An acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2, and therefore consisting entirely of hydrogen atoms and saturated carbon atoms.
charge: 0
formula: CH3R
mass: 15.035
monoisotopicmass: 15.02348
smiles: C[*]
has alternative id: CHEBI:13435
has alternative id: CHEBI:22317
has alternative id: CHEBI:2576
database_cross_reference: KEGG:C01371
has_exact_synonym: Alkane
has_exact_synonym: alkane
has_exact_synonym: alkanes
has OBO namespace: chebi_ontology
has_related_synonym: Alkan
has_related_synonym: RH
has_related_synonym: alcane
has_related_synonym: alcanes
has_related_synonym: alcano
has_related_synonym: alcanos
has_related_synonym: an alkane
id: CHEBI:18310
in_subset: 3 STAR

Axiom
annotated source: alkane
annotated property: has_exact_synonym
annotated target: Alkane
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: alkane
annotated property: has_exact_synonym
annotated target: alkane
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: alkane
annotated property: has_exact_synonym
annotated target: alkanes
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: alkane
annotated property: has_related_synonym
annotated target: Alkan
database_cross_reference: ChEBI

Axiom
annotated source: alkane
annotated property: has_related_synonym
annotated target: RH
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: alkane
annotated property: has_related_synonym
annotated target: alcane
database_cross_reference: IUPAC

Axiom
annotated source: alkane
annotated property: has_related_synonym
annotated target: alcanes
database_cross_reference: IUPAC

Axiom
annotated source: alkane
annotated property: has_related_synonym
annotated target: alcano
database_cross_reference: IUPAC

Axiom
annotated source: alkane
annotated property: has_related_synonym
annotated target: alcanos
database_cross_reference: IUPAC

Axiom
annotated source: alkane
annotated property: has_related_synonym
annotated target: an alkane
database_cross_reference: UniProt

phosphate(3-)
type: Class
subclass of: phosphate ion
subclass of: trivalent inorganic anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: hydrogenphosphate
definition: A phosphate ion that is the conjugate base of hydrogenphosphate.
charge: -3
formula: O4P
inchi: InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3
inchikey: NBIIXXVUZAFLBC-UHFFFAOYSA-K
mass: 94.97136
monoisotopicmass: 94.95507
smiles: [O-]P([O-])([O-])=O
has alternative id: CHEBI:14791
has alternative id: CHEBI:45024
has alternative id: CHEBI:7793
database_cross_reference: Beilstein:3903772
database_cross_reference: CAS:14265-44-2
database_cross_reference: Gmelin:1997
database_cross_reference: KEGG:C00009
database_cross_reference: PDBeChem:PO4
database_cross_reference: Reaxys:3903772
has_exact_synonym: phosphate
has_exact_synonym: tetraoxidophosphate(3-)
has_exact_synonym: tetraoxophosphate(3-)
has_exact_synonym: tetraoxophosphate(V)
has OBO namespace: chebi_ontology
has_related_synonym: Orthophosphate
has_related_synonym: PHOSPHATE ION
has_related_synonym: PO4(3-)
has_related_synonym: Phosphate
has_related_synonym: [PO4](3-)
id: CHEBI:18367
in_subset: 3 STAR

Axiom
annotated source: phosphate(3-)
annotated property: database_cross_reference
annotated target: Beilstein:3903772
source: Beilstein

Axiom
annotated source: phosphate(3-)
annotated property: database_cross_reference
annotated target: CAS:14265-44-2
source: ChemIDplus

Axiom
annotated source: phosphate(3-)
annotated property: database_cross_reference
annotated target: CAS:14265-44-2
source: KEGG COMPOUND

Axiom
annotated source: phosphate(3-)
annotated property: database_cross_reference
annotated target: Gmelin:1997
source: Gmelin

Axiom
annotated source: phosphate(3-)
annotated property: database_cross_reference
annotated target: PDBeChem:PO4
source: ChEBI

Axiom
annotated source: phosphate(3-)
annotated property: database_cross_reference
annotated target: Reaxys:3903772
source: Reaxys

Axiom
annotated source: phosphate(3-)
annotated property: has_exact_synonym
annotated target: phosphate
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: phosphate(3-)
annotated property: has_exact_synonym
annotated target: tetraoxidophosphate(3-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: phosphate(3-)
annotated property: has_exact_synonym
annotated target: tetraoxophosphate(3-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: phosphate(3-)
annotated property: has_exact_synonym
annotated target: tetraoxophosphate(V)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: phosphate(3-)
annotated property: has_related_synonym
annotated target: Orthophosphate
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: phosphate(3-)
annotated property: has_related_synonym
annotated target: PHOSPHATE ION
database_cross_reference: PDBeChem

Axiom
annotated source: phosphate(3-)
annotated property: has_related_synonym
annotated target: PO4(3-)
database_cross_reference: IUPAC

Axiom
annotated source: phosphate(3-)
annotated property: has_related_synonym
annotated target: Phosphate
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: phosphate(3-)
annotated property: has_related_synonym
annotated target: [PO4](3-)
database_cross_reference: IUPAC

acyl group
type: Class
subclass of: organic group
definition: An organic group formed by removing one or more hydroxy groups from an oxoacid that has the general structure RkE(=O)l(OH)m (l =/= 0). Although the term is almost always applied to organic compounds, with carboxylic acid as the oxoacid, acyl groups can in principle be derived from other types of acids such as sulfonic acids or phosphonic acids.
has_exact_synonym: acyl group
has_exact_synonym: alkanoyl
has OBO namespace: chebi_ontology
has_related_synonym: acyl groups
has_related_synonym: alkanoyl group
has_related_synonym: groupe acyle
id: CHEBI:22221
in_subset: 3 STAR

Axiom
annotated source: acyl group
annotated property: has_exact_synonym
annotated target: acyl group
database_cross_reference: IUPAC

Axiom
annotated source: acyl group
annotated property: has_exact_synonym
annotated target: alkanoyl
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: acyl group
annotated property: has_related_synonym
annotated target: acyl groups
database_cross_reference: ChEBI

Axiom
annotated source: acyl group
annotated property: has_related_synonym
annotated target: alkanoyl group
database_cross_reference: ChEBI

Axiom
annotated source: acyl group
annotated property: has_related_synonym
annotated target: groupe acyle
database_cross_reference: IUPAC

alkaline earth metal atom
type: Class
subclass of: main group element atom
subclass of: metal atom
subclass of: s-block element atom
has_exact_synonym: alkaline earth metals
has OBO namespace: chebi_ontology
has_related_synonym: Erdalkalimetall
has_related_synonym: Erdalkalimetalle
has_related_synonym: alkaline earth metal
has_related_synonym: alkaline-earth metal
has_related_synonym: alkaline-earth metals
has_related_synonym: metal alcalino-terreux
has_related_synonym: metal alcalinoterreo
has_related_synonym: metales alcalinoterreos
has_related_synonym: metaux alcalino-terreux
id: CHEBI:22313
in_subset: 3 STAR

Axiom
annotated source: alkaline earth metal atom
annotated property: has_exact_synonym
annotated target: alkaline earth metals
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: alkaline earth metal atom
annotated property: has_related_synonym
annotated target: Erdalkalimetall
database_cross_reference: ChEBI

Axiom
annotated source: alkaline earth metal atom
annotated property: has_related_synonym
annotated target: Erdalkalimetalle
database_cross_reference: ChEBI

Axiom
annotated source: alkaline earth metal atom
annotated property: has_related_synonym
annotated target: alkaline earth metal
database_cross_reference: ChEBI

Axiom
annotated source: alkaline earth metal atom
annotated property: has_related_synonym
annotated target: alkaline-earth metal
database_cross_reference: ChEBI

Axiom
annotated source: alkaline earth metal atom
annotated property: has_related_synonym
annotated target: alkaline-earth metals
database_cross_reference: ChEBI

Axiom
annotated source: alkaline earth metal atom
annotated property: has_related_synonym
annotated target: metal alcalino-terreux
database_cross_reference: ChEBI

Axiom
annotated source: alkaline earth metal atom
annotated property: has_related_synonym
annotated target: metal alcalinoterreo
database_cross_reference: ChEBI

Axiom
annotated source: alkaline earth metal atom
annotated property: has_related_synonym
annotated target: metales alcalinoterreos
database_cross_reference: ChEBI

Axiom
annotated source: alkaline earth metal atom
annotated property: has_related_synonym
annotated target: metaux alcalino-terreux
database_cross_reference: ChEBI

alkaloid
type: Class
subclass of: organonitrogen compound
subclass of: Restriction
  on property: has role
  some values from: metabolite
definition: Any of the naturally occurring, basic nitrogen compounds (mostly heterocyclic) occurring mostly in the plant kingdom, but also found in bacteria, fungi, and animals. By extension, certain neutral compounds biogenetically related to basic alkaloids are also classed as alkaloids. Amino acids, peptides, proteins, nucleotides, nucleic acids, amino sugars and antibiotics are not normally regarded as alkaloids. Compounds in which the nitrogen is exocyclic (dopamine, mescaline, serotonin, etc.) are usually classed as amines rather than alkaloids.
database_cross_reference: Wikipedia:Alkaloid
has_exact_synonym: Alkaloid
has_exact_synonym: alkaloids
has OBO namespace: chebi_ontology
has_related_synonym: Alkaloide
has_related_synonym: alcaloide
has_related_synonym: alcaloides
id: CHEBI:22315
in_subset: 3 STAR

Axiom
annotated source: alkaloid
annotated property: has_exact_synonym
annotated target: Alkaloid
database_cross_reference: ChEBI

Axiom
annotated source: alkaloid
annotated property: has_exact_synonym
annotated target: alkaloids
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: alkaloid
annotated property: has_related_synonym
annotated target: Alkaloide
database_cross_reference: ChEBI

Axiom
annotated source: alkaloid
annotated property: has_related_synonym
annotated target: alcaloide
database_cross_reference: ChEBI

Axiom
annotated source: alkaloid
annotated property: has_related_synonym
annotated target: alcaloides
database_cross_reference: ChEBI

aminoglycan
type: Class
subclass of: organonitrogen compound
subclass of: polysaccharide derivative
has OBO namespace: chebi_ontology
has_related_synonym: aminoglycans
id: CHEBI:22506
in_subset: 3 STAR

Axiom
annotated source: aminoglycan
annotated property: has_related_synonym
annotated target: aminoglycans
database_cross_reference: ChEBI

anion
type: Class
subclass of: ion
definition: A monoatomic or polyatomic species having one or more elementary charges of the electron.
has_exact_synonym: Anion
has_exact_synonym: anion
has OBO namespace: chebi_ontology
has_related_synonym: Anionen
has_related_synonym: aniones
has_related_synonym: anions
id: CHEBI:22563
in_subset: 3 STAR

Axiom
annotated source: anion
annotated property: has_exact_synonym
annotated target: Anion
database_cross_reference: ChEBI

Axiom
annotated source: anion
annotated property: has_exact_synonym
annotated target: anion
database_cross_reference: ChEBI

Axiom
annotated source: anion
annotated property: has_exact_synonym
annotated target: anion
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: anion
annotated property: has_related_synonym
annotated target: Anionen
database_cross_reference: ChEBI

Axiom
annotated source: anion
annotated property: has_related_synonym
annotated target: aniones
database_cross_reference: ChEBI

Axiom
annotated source: anion
annotated property: has_related_synonym
annotated target: anions
database_cross_reference: IUPAC

base
type: Class
subclass of: chemical role
definition: A molecular entity having an available pair of electrons capable of forming a covalent bond with a hydron (Bronsted base) or with the vacant orbital of some other molecular entity (Lewis base).
database_cross_reference: KEGG:C00701
has_exact_synonym: Base
has_exact_synonym: base
has OBO namespace: chebi_ontology
has_related_synonym: Base1
has_related_synonym: Base2
has_related_synonym: Basen
has_related_synonym: Nucleobase
has_related_synonym: bases
id: CHEBI:22695
in_subset: 3 STAR

Axiom
annotated source: base
annotated property: has_exact_synonym
annotated target: Base
database_cross_reference: ChEBI

Axiom
annotated source: base
annotated property: has_exact_synonym
annotated target: base
database_cross_reference: ChEBI

Axiom
annotated source: base
annotated property: has_exact_synonym
annotated target: base
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: base
annotated property: has_related_synonym
annotated target: Base1
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: base
annotated property: has_related_synonym
annotated target: Base2
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: base
annotated property: has_related_synonym
annotated target: Basen
database_cross_reference: ChEBI

Axiom
annotated source: base
annotated property: has_related_synonym
annotated target: Nucleobase
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: base
annotated property: has_related_synonym
annotated target: bases
database_cross_reference: ChEBI

benzopyrrole
type: Class
subclass of: organic heterobicyclic compound
subclass of: organonitrogen heterocyclic compound
subclass of: polycyclic heteroarene
has OBO namespace: chebi_ontology
has_related_synonym: benzopyrroles
id: CHEBI:22728
in_subset: 3 STAR

Axiom
annotated source: benzopyrrole
annotated property: has_related_synonym
annotated target: benzopyrroles
database_cross_reference: ChEBI

carbamoyl group
type: Class
subclass of: univalent carboacyl group
subclass of: Restriction
  on property: is substituent group from
  some values from: carbamic acid
definition: The univalent carboacyl group formed by loss of -OH from the carboxy group of carbamic acid.
charge: 0
formula: CH2NO
mass: 44.03272
monoisotopicmass: 44.01364
smiles: *C(N)=O
database_cross_reference: PMID:24168430
has_exact_synonym: carbamoyl
has OBO namespace: chebi_ontology
has_related_synonym: -C(O)NH2
has_related_synonym: -CONH2
has_related_synonym: aminocarbonyl
has_related_synonym: carbamyl
has_related_synonym: carbamyl group
has_related_synonym: carboxamide
id: CHEBI:23004
in_subset: 3 STAR

Axiom
annotated source: carbamoyl group
annotated property: database_cross_reference
annotated target: PMID:24168430
source: Europe PMC

Axiom
annotated source: carbamoyl group
annotated property: has_exact_synonym
annotated target: carbamoyl
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbamoyl group
annotated property: has_related_synonym
annotated target: -C(O)NH2
database_cross_reference: ChEBI

Axiom
annotated source: carbamoyl group
annotated property: has_related_synonym
annotated target: -CONH2
database_cross_reference: IUPAC

Axiom
annotated source: carbamoyl group
annotated property: has_related_synonym
annotated target: aminocarbonyl
database_cross_reference: IUPAC

Axiom
annotated source: carbamoyl group
annotated property: has_related_synonym
annotated target: carbamyl
database_cross_reference: ChEBI

Axiom
annotated source: carbamoyl group
annotated property: has_related_synonym
annotated target: carbamyl group
database_cross_reference: ChEBI

Axiom
annotated source: carbamoyl group
annotated property: has_related_synonym
annotated target: carboxamide
database_cross_reference: IUPAC

carbon oxide
type: Class
subclass of: organic oxide
subclass of: organooxygen compound
has OBO namespace: chebi_ontology
has_related_synonym: carbon oxides
has_related_synonym: oxides of carbon
id: CHEBI:23014
in_subset: 3 STAR

Axiom
annotated source: carbon oxide
annotated property: has_related_synonym
annotated target: carbon oxides
database_cross_reference: ChEBI

Axiom
annotated source: carbon oxide
annotated property: has_related_synonym
annotated target: oxides of carbon
database_cross_reference: ChEBI

carbonyl group
type: Class
subclass of: organodiyl group
charge: 0
formula: CO
mass: 28.01010
monoisotopicmass: 27.99491
smiles: O=C(*)*
has_exact_synonym: carbonyl
has_exact_synonym: carbonyl group
has OBO namespace: chebi_ontology
has_related_synonym: >C=O
id: CHEBI:23019
in_subset: 3 STAR

Axiom
annotated source: carbonyl group
annotated property: has_exact_synonym
annotated target: carbonyl
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbonyl group
annotated property: has_exact_synonym
annotated target: carbonyl group
database_cross_reference: ChEBI

Axiom
annotated source: carbonyl group
annotated property: has_exact_synonym
annotated target: carbonyl group
database_cross_reference: UniProt

Axiom
annotated source: carbonyl group
annotated property: has_related_synonym
annotated target: >C=O
database_cross_reference: IUPAC

cofactor
type: Class
subclass of: biochemical role
definition: An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group).
database_cross_reference: Wikipedia:Cofactor_(biochemistry)
has_exact_synonym: cofactor
has_exact_synonym: cofactors
has OBO namespace: chebi_ontology
id: CHEBI:23357
in_subset: 3 STAR

Axiom
annotated source: cofactor
annotated property: has_exact_synonym
annotated target: cofactor
database_cross_reference: IUPAC

Axiom
annotated source: cofactor
annotated property: has_exact_synonym
annotated target: cofactors
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

molecular entity
type: Class
subclass of: chemical entity
definition: Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
has_exact_synonym: molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: entidad molecular
has_related_synonym: entidades moleculares
has_related_synonym: entite moleculaire
has_related_synonym: molecular entities
has_related_synonym: molekulare Entitaet
id: CHEBI:23367
in_subset: 3 STAR

Axiom
annotated source: molecular entity
annotated property: definition
annotated target: Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
database_cross_reference: fake:2

Axiom
annotated source: molecular entity
annotated property: has_exact_synonym
annotated target: molecular entity
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: entidad molecular
database_cross_reference: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: entidades moleculares
database_cross_reference: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: entite moleculaire
database_cross_reference: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: molecular entities
database_cross_reference: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: molekulare Entitaet
database_cross_reference: ChEBI

cyclic peptide
type: Class
subclass of: peptide
has OBO namespace: chebi_ontology
has_related_synonym: Cyclopeptid
has_related_synonym: Zyklopeptid
has_related_synonym: cyclic peptides
has_related_synonym: peptide cyclique
has_related_synonym: peptido ciclico
id: CHEBI:23449
in_subset: 3 STAR

Axiom
annotated source: cyclic peptide
annotated property: has_related_synonym
annotated target: Cyclopeptid
database_cross_reference: ChEBI

Axiom
annotated source: cyclic peptide
annotated property: has_related_synonym
annotated target: Zyklopeptid
database_cross_reference: ChEBI

Axiom
annotated source: cyclic peptide
annotated property: has_related_synonym
annotated target: cyclic peptides
database_cross_reference: ChEBI

Axiom
annotated source: cyclic peptide
annotated property: has_related_synonym
annotated target: peptide cyclique
database_cross_reference: IUPAC

Axiom
annotated source: cyclic peptide
annotated property: has_related_synonym
annotated target: peptido ciclico
database_cross_reference: IUPAC

drug
type: Class
subclass of: pharmaceutical
definition: Any substance which when absorbed into a living organism may modify one or more of its functions. The term is generally accepted for a substance taken for a therapeutic purpose, but is also commonly used for abused substances.
has OBO namespace: chebi_ontology
has_related_synonym: drugs
has_related_synonym: medicine
id: CHEBI:23888
in_subset: 3 STAR

Axiom
annotated source: drug
annotated property: has_related_synonym
annotated target: drugs
database_cross_reference: ChEBI

Axiom
annotated source: drug
annotated property: has_related_synonym
annotated target: medicine
database_cross_reference: ChEBI

enzyme inhibitor
type: Class
subclass of: inhibitor
subclass of: biochemical role
definition: A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction.
has_exact_synonym: enzyme inhibitor
has OBO namespace: chebi_ontology
has_related_synonym: enzyme inhibitors
has_related_synonym: inhibidor enzimatico
has_related_synonym: inhibidores enzimaticos
has_related_synonym: inhibiteur enzymatique
has_related_synonym: inhibiteurs enzymatiques
id: CHEBI:23924
in_subset: 3 STAR

Axiom
annotated source: enzyme inhibitor
annotated property: has_exact_synonym
annotated target: enzyme inhibitor
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: enzyme inhibitor
annotated property: has_related_synonym
annotated target: enzyme inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: enzyme inhibitor
annotated property: has_related_synonym
annotated target: inhibidor enzimatico
database_cross_reference: ChEBI

Axiom
annotated source: enzyme inhibitor
annotated property: has_related_synonym
annotated target: inhibidores enzimaticos
database_cross_reference: ChEBI

Axiom
annotated source: enzyme inhibitor
annotated property: has_related_synonym
annotated target: inhibiteur enzymatique
database_cross_reference: ChEBI

Axiom
annotated source: enzyme inhibitor
annotated property: has_related_synonym
annotated target: inhibiteurs enzymatiques
database_cross_reference: ChEBI

chemical entity
type: Class
subclass of: object
definition: A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
has_exact_synonym: chemical entity
has OBO namespace: chebi_ontology
id: CHEBI:24431
in_subset: 3 STAR

Axiom
annotated source: chemical entity
annotated property: has_exact_synonym
annotated target: chemical entity
database_cross_reference: UniProt

biological role
type: Class
subclass of: role
definition: A role played by the molecular entity or part thereof within a biological context.
has OBO namespace: chebi_ontology
has_related_synonym: biological function
id: CHEBI:24432
in_subset: 3 STAR

Axiom
annotated source: biological role
annotated property: has_related_synonym
annotated target: biological function
database_cross_reference: ChEBI

group
type: Class
subclass of: chemical entity
subclass of: Restriction
  on property: has part
  some values from: atom
definition: A defined linked collection of atoms or a single atom within a molecular entity.
has_exact_synonym: group
has OBO namespace: chebi_ontology
has_related_synonym: Gruppe
has_related_synonym: Rest
has_related_synonym: groupe
has_related_synonym: grupo
has_related_synonym: grupos
id: CHEBI:24433
in_subset: 3 STAR

Axiom
annotated source: group
annotated property: has_exact_synonym
annotated target: group
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: Gruppe
database_cross_reference: ChEBI

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: Rest
database_cross_reference: ChEBI

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: groupe
database_cross_reference: IUPAC

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: grupo
database_cross_reference: IUPAC

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: grupos
database_cross_reference: IUPAC

organic heterocyclic compound
type: Class
subclass of: heteroorganic entity
subclass of: organic cyclic compound
subclass of: heterocyclic compound
definition: A cyclic compound having as ring members atoms of carbon and at least of one other element.
has OBO namespace: chebi_ontology
has_related_synonym: organic heterocycle
has_related_synonym: organic heterocyclic compounds
id: CHEBI:24532
in_subset: 3 STAR

Axiom
annotated source: organic heterocyclic compound
annotated property: has_related_synonym
annotated target: organic heterocycle
database_cross_reference: ChEBI

Axiom
annotated source: organic heterocyclic compound
annotated property: has_related_synonym
annotated target: organic heterocyclic compounds
database_cross_reference: ChEBI

heterodetic cyclic peptide
type: Class
subclass of: cyclic peptide
definition: A heterodetic cyclic peptide is a peptide consisting only of amino-acid residues, but in which the linkages forming the ring are not solely peptide bonds; one or more is an isopeptide, disulfide, ester, or other bond.
has_exact_synonym: heterodetic cyclic peptide
has OBO namespace: chebi_ontology
has_related_synonym: heterodetic cyclic peptides
has_related_synonym: peptide cyclique heterodetique
has_related_synonym: peptido ciclico heterodetico
id: CHEBI:24533
in_subset: 3 STAR

Axiom
annotated source: heterodetic cyclic peptide
annotated property: has_exact_synonym
annotated target: heterodetic cyclic peptide
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: heterodetic cyclic peptide
annotated property: has_related_synonym
annotated target: heterodetic cyclic peptides
database_cross_reference: ChEBI

Axiom
annotated source: heterodetic cyclic peptide
annotated property: has_related_synonym
annotated target: peptide cyclique heterodetique
database_cross_reference: IUPAC

Axiom
annotated source: heterodetic cyclic peptide
annotated property: has_related_synonym
annotated target: peptido ciclico heterodetico
database_cross_reference: IUPAC

hormone
type: Class
subclass of: molecular messenger
subclass of: agonist
definition: Originally referring to an endogenous compound that is formed in specialized organ or group of cells and carried to another organ or group of cells, in the same organism, upon which it has a specific regulatory function, the term is now commonly used to include non-endogenous, semi-synthetic and fully synthetic analogues of such compounds.
has OBO namespace: chebi_ontology
has_related_synonym: endocrine
has_related_synonym: hormones
id: CHEBI:24621
in_subset: 3 STAR

Axiom
annotated source: hormone
annotated property: has_related_synonym
annotated target: endocrine
database_cross_reference: ChEBI

Axiom
annotated source: hormone
annotated property: has_related_synonym
annotated target: hormones
database_cross_reference: ChEBI

hydrocarbon
type: Class
subclass of: organic fundamental parent
definition: A compound consisting of carbon and hydrogen only.
has_exact_synonym: hydrocarbon
has_exact_synonym: hydrocarbons
has OBO namespace: chebi_ontology
has_related_synonym: Kohlenwasserstoff
has_related_synonym: Kohlenwasserstoffe
has_related_synonym: hidrocarburo
has_related_synonym: hidrocarburos
has_related_synonym: hydrocarbure
id: CHEBI:24632
in_subset: 3 STAR

Axiom
annotated source: hydrocarbon
annotated property: has_exact_synonym
annotated target: hydrocarbon
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrocarbon
annotated property: has_exact_synonym
annotated target: hydrocarbons
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrocarbon
annotated property: has_related_synonym
annotated target: Kohlenwasserstoff
database_cross_reference: ChEBI

Axiom
annotated source: hydrocarbon
annotated property: has_related_synonym
annotated target: Kohlenwasserstoffe
database_cross_reference: ChEBI

Axiom
annotated source: hydrocarbon
annotated property: has_related_synonym
annotated target: hidrocarburo
database_cross_reference: IUPAC

Axiom
annotated source: hydrocarbon
annotated property: has_related_synonym
annotated target: hidrocarburos
database_cross_reference: IUPAC

Axiom
annotated source: hydrocarbon
annotated property: has_related_synonym
annotated target: hydrocarbure
database_cross_reference: IUPAC

hydroxides
type: Class
subclass of: oxygen molecular entity
subclass of: hydrogen molecular entity
subclass of: heteroatomic molecular entity
subclass of: Restriction
  on property: has part
  some values from: hydroxy group
definition: Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-)).
has OBO namespace: chebi_ontology
id: CHEBI:24651
in_subset: 3 STAR

indoles
type: Class
subclass of: benzopyrrole
definition: Any compound containing an indole skeleton.
has OBO namespace: chebi_ontology
id: CHEBI:24828
in_subset: 3 STAR

oxoacid
type: Class
subclass of: hydroxides
subclass of: Restriction
  on property: has role
  some values from: Bronsted acid
definition: A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
has_exact_synonym: oxoacid
has_exact_synonym: oxoacids
has OBO namespace: chebi_ontology
has_related_synonym: oxacids
has_related_synonym: oxiacids
has_related_synonym: oxo acid
has_related_synonym: oxy-acids
has_related_synonym: oxyacids
id: CHEBI:24833
in_subset: 3 STAR

Axiom
annotated source: oxoacid
annotated property: has_exact_synonym
annotated target: oxoacid
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: oxoacid
annotated property: has_exact_synonym
annotated target: oxoacids
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: oxoacid
annotated property: has_related_synonym
annotated target: oxacids
database_cross_reference: ChEBI

Axiom
annotated source: oxoacid
annotated property: has_related_synonym
annotated target: oxiacids
database_cross_reference: ChEBI

Axiom
annotated source: oxoacid
annotated property: has_related_synonym
annotated target: oxo acid
database_cross_reference: ChEBI

Axiom
annotated source: oxoacid
annotated property: has_related_synonym
annotated target: oxy-acids
database_cross_reference: ChEBI

Axiom
annotated source: oxoacid
annotated property: has_related_synonym
annotated target: oxyacids
database_cross_reference: ChEBI

inorganic anion
type: Class
subclass of: anion
subclass of: inorganic ion
has OBO namespace: chebi_ontology
has_related_synonym: inorganic anions
id: CHEBI:24834
in_subset: 3 STAR

Axiom
annotated source: inorganic anion
annotated property: has_related_synonym
annotated target: inorganic anions
database_cross_reference: ChEBI

inorganic molecular entity
type: Class
subclass of: molecular entity
definition: A molecular entity that contains no carbon.
has OBO namespace: chebi_ontology
has_related_synonym: anorganische Verbindungen
has_related_synonym: inorganic compounds
has_related_synonym: inorganic entity
has_related_synonym: inorganic molecular entities
has_related_synonym: inorganics
id: CHEBI:24835
in_subset: 3 STAR

Axiom
annotated source: inorganic molecular entity
annotated property: has_related_synonym
annotated target: anorganische Verbindungen
database_cross_reference: ChEBI

Axiom
annotated source: inorganic molecular entity
annotated property: has_related_synonym
annotated target: inorganic compounds
database_cross_reference: ChEBI

Axiom
annotated source: inorganic molecular entity
annotated property: has_related_synonym
annotated target: inorganic entity
database_cross_reference: ChEBI

Axiom
annotated source: inorganic molecular entity
annotated property: has_related_synonym
annotated target: inorganic molecular entities
database_cross_reference: ChEBI

Axiom
annotated source: inorganic molecular entity
annotated property: has_related_synonym
annotated target: inorganics
database_cross_reference: ChEBI

inorganic oxide
type: Class
subclass of: inorganic molecular entity
subclass of: oxide
has OBO namespace: chebi_ontology
has_related_synonym: inorganic oxides
id: CHEBI:24836
in_subset: 3 STAR

Axiom
annotated source: inorganic oxide
annotated property: has_related_synonym
annotated target: inorganic oxides
database_cross_reference: ChEBI

ion
type: Class
subclass of: molecular entity
definition: A molecular entity having a net electric charge.
has_exact_synonym: Ion
has_exact_synonym: ion
has OBO namespace: chebi_ontology
has_related_synonym: Ionen
has_related_synonym: iones
has_related_synonym: ions
id: CHEBI:24870
in_subset: 3 STAR

Axiom
annotated source: ion
annotated property: has_exact_synonym
annotated target: Ion
database_cross_reference: ChEBI

Axiom
annotated source: ion
annotated property: has_exact_synonym
annotated target: ion
database_cross_reference: ChEBI

Axiom
annotated source: ion
annotated property: has_exact_synonym
annotated target: ion
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ion
annotated property: has_related_synonym
annotated target: Ionen
database_cross_reference: ChEBI

Axiom
annotated source: ion
annotated property: has_related_synonym
annotated target: iones
database_cross_reference: ChEBI

Axiom
annotated source: ion
annotated property: has_related_synonym
annotated target: ions
database_cross_reference: ChEBI

magnesium atom
type: Class
subclass of: alkaline earth metal atom
subclass of: Restriction
  on property: has role
  some values from: macronutrient
charge: 0
formula: Mg
inchi: InChI=1S/Mg
inchikey: FYYHWMGAXLPEAU-UHFFFAOYSA-N
mass: 24.30500
monoisotopicmass: 23.98504
smiles: [Mg]
database_cross_reference: CAS:7439-95-4
database_cross_reference: DrugBank:DB01378
database_cross_reference: Gmelin:16207
database_cross_reference: KEGG:C00305
database_cross_reference: WebElements:Mg
has_exact_synonym: magnesium
has OBO namespace: chebi_ontology
has_related_synonym: 12Mg
has_related_synonym: Magnesium
has_related_synonym: Mg
has_related_synonym: magnesio
has_related_synonym: magnesium
id: CHEBI:25107
in_subset: 3 STAR

Axiom
annotated source: magnesium atom
annotated property: database_cross_reference
annotated target: CAS:7439-95-4
source: ChemIDplus

Axiom
annotated source: magnesium atom
annotated property: database_cross_reference
annotated target: Gmelin:16207
source: Gmelin

Axiom
annotated source: magnesium atom
annotated property: has_exact_synonym
annotated target: magnesium
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: magnesium atom
annotated property: has_related_synonym
annotated target: 12Mg
database_cross_reference: IUPAC

Axiom
annotated source: magnesium atom
annotated property: has_related_synonym
annotated target: Magnesium
database_cross_reference: ChEBI

Axiom
annotated source: magnesium atom
annotated property: has_related_synonym
annotated target: Mg
database_cross_reference: IUPAC

Axiom
annotated source: magnesium atom
annotated property: has_related_synonym
annotated target: Mg
database_cross_reference: UniProt

Axiom
annotated source: magnesium atom
annotated property: has_related_synonym
annotated target: magnesio
database_cross_reference: ChEBI

Axiom
annotated source: magnesium atom
annotated property: has_related_synonym
annotated target: magnesium
database_cross_reference: ChEBI

magnesium molecular entity
type: Class
subclass of: alkaline earth molecular entity
subclass of: Restriction
  on property: has part
  some values from: magnesium atom
has_exact_synonym: magnesium molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: magnesium compounds
has_related_synonym: magnesium molecular entities
id: CHEBI:25108
in_subset: 3 STAR

Axiom
annotated source: magnesium molecular entity
annotated property: has_exact_synonym
annotated target: magnesium molecular entity
database_cross_reference: ChEBI

Axiom
annotated source: magnesium molecular entity
annotated property: has_related_synonym
annotated target: magnesium compounds
database_cross_reference: ChEBI

Axiom
annotated source: magnesium molecular entity
annotated property: has_related_synonym
annotated target: magnesium molecular entities
database_cross_reference: ChEBI

magnesium porphyrin
type: Class
subclass of: metalloporphyrin
subclass of: magnesium tetrapyrrole
has OBO namespace: chebi_ontology
has_related_synonym: magnesium porphyrins
id: CHEBI:25111
in_subset: 3 STAR

Axiom
annotated source: magnesium porphyrin
annotated property: has_related_synonym
annotated target: magnesium porphyrins
database_cross_reference: ChEBI

metabolite
type: Class
subclass of: biochemical role
definition: Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites.
has alternative id: CHEBI:26619
has alternative id: CHEBI:35220
has_exact_synonym: metabolite
has OBO namespace: chebi_ontology
has_related_synonym: metabolites
has_related_synonym: primary metabolites
has_related_synonym: secondary metabolites
id: CHEBI:25212
in_subset: 3 STAR

Axiom
annotated source: metabolite
annotated property: has_exact_synonym
annotated target: metabolite
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: metabolite
annotated property: has_related_synonym
annotated target: metabolites
database_cross_reference: ChEBI

Axiom
annotated source: metabolite
annotated property: has_related_synonym
annotated target: primary metabolites
database_cross_reference: ChEBI

Axiom
annotated source: metabolite
annotated property: has_related_synonym
annotated target: secondary metabolites
database_cross_reference: ChEBI

metalloporphyrin
type: Class
subclass of: porphyrins
subclass of: coordination entity
subclass of: metallotetrapyrrole
has OBO namespace: chebi_ontology
has_related_synonym: metalloporphyrins
has_related_synonym: metaloporphyrins
id: CHEBI:25216
in_subset: 3 STAR

Axiom
annotated source: metalloporphyrin
annotated property: has_related_synonym
annotated target: metalloporphyrins
database_cross_reference: ChEBI

Axiom
annotated source: metalloporphyrin
annotated property: has_related_synonym
annotated target: metaloporphyrins
database_cross_reference: ChEBI

methyl ester
type: Class
subclass of: carboxylic ester
subclass of: Restriction
  on property: has functional parent
  some values from: methanol
definition: Any carboxylic ester resulting from the formal condensation of a carboxy group with methanol.
charge: 0
formula: C2H3O2R
mass: 59.044
monoisotopicmass: 59.01330
smiles: COC([*])=O
has OBO namespace: chebi_ontology
has_related_synonym: carboxylic acid methyl ester
has_related_synonym: carboxylic acid methyl esters
id: CHEBI:25248
in_subset: 3 STAR

Axiom
annotated source: methyl ester
annotated property: has_related_synonym
annotated target: carboxylic acid methyl ester
database_cross_reference: ChEBI

Axiom
annotated source: methyl ester
annotated property: has_related_synonym
annotated target: carboxylic acid methyl esters
database_cross_reference: ChEBI

mitochondrial respiratory-chain inhibitor
type: Class
subclass of: respiratory-chain inhibitor
has OBO namespace: chebi_ontology
has_related_synonym: mitochondrial electron transport chain inhibitors
has_related_synonym: mitochondrial electron-transport chain inhibitor
has_related_synonym: mitochondrial respiratory chain inhibitors
id: CHEBI:25355
in_subset: 3 STAR

Axiom
annotated source: mitochondrial respiratory-chain inhibitor
annotated property: has_related_synonym
annotated target: mitochondrial electron transport chain inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: mitochondrial respiratory-chain inhibitor
annotated property: has_related_synonym
annotated target: mitochondrial electron-transport chain inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: mitochondrial respiratory-chain inhibitor
annotated property: has_related_synonym
annotated target: mitochondrial respiratory chain inhibitors
database_cross_reference: ChEBI

elemental molecule
type: Class
subclass of: molecule
subclass of: elemental molecular entity
definition: A molecule all atoms of which have the same atomic number.
has OBO namespace: chebi_ontology
has_related_synonym: homoatomic molecule
has_related_synonym: homoatomic molecules
id: CHEBI:25362
in_subset: 3 STAR

Axiom
annotated source: elemental molecule
annotated property: has_related_synonym
annotated target: homoatomic molecule
database_cross_reference: ChEBI

Axiom
annotated source: elemental molecule
annotated property: has_related_synonym
annotated target: homoatomic molecules
database_cross_reference: ChEBI

molecule
type: Class
subclass of: polyatomic entity
definition: Any polyatomic entity that is an electrically neutral entity consisting of more than one atom.
has_exact_synonym: molecule
has OBO namespace: chebi_ontology
has_related_synonym: Molekuel
has_related_synonym: molecula
has_related_synonym: molecules
has_related_synonym: neutral molecular compounds
id: CHEBI:25367
in_subset: 3 STAR

Axiom
annotated source: molecule
annotated property: has_exact_synonym
annotated target: molecule
database_cross_reference: IUPAC

Axiom
annotated source: molecule
annotated property: has_related_synonym
annotated target: Molekuel
database_cross_reference: ChEBI

Axiom
annotated source: molecule
annotated property: has_related_synonym
annotated target: molecula
database_cross_reference: IUPAC

Axiom
annotated source: molecule
annotated property: has_related_synonym
annotated target: molecules
database_cross_reference: IUPAC

Axiom
annotated source: molecule
annotated property: has_related_synonym
annotated target: neutral molecular compounds
database_cross_reference: IUPAC

monoamine molecular messenger
type: Class
subclass of: monoamine
subclass of: Restriction
  on property: has role
  some values from: molecular messenger
definition: A group of neurotransmitters and neuromodulators that contain one amino group that is connected to an aromatic ring by ethylene group (-CH2-CH2-). Monoamines are derived from the aromatic amino acids phenylalanine, tyrosine, histidine and tryptophan.
has OBO namespace: chebi_ontology
has_related_synonym: monamines
has_related_synonym: monoamines
id: CHEBI:25375
in_subset: 3 STAR

Axiom
annotated source: monoamine molecular messenger
annotated property: has_related_synonym
annotated target: monamines
database_cross_reference: ChEBI

Axiom
annotated source: monoamine molecular messenger
annotated property: has_related_synonym
annotated target: monoamines
database_cross_reference: ChEBI

monocarboxylic acid
type: Class
subclass of: carboxylic acid
subclass of: Restriction
  on property: is conjugate acid of
  some values from: monocarboxylic acid anion
definition: An oxoacid containing a single carboxy group.
has OBO namespace: chebi_ontology
has_related_synonym: monocarboxylic acids
id: CHEBI:25384
in_subset: 3 STAR

Axiom
annotated source: monocarboxylic acid
annotated property: has_related_synonym
annotated target: monocarboxylic acids
database_cross_reference: ChEBI

neurotransmitter
type: Class
subclass of: molecular messenger
definition: An endogenous compound that is used to transmit information across the synapse between a neuron and another cell.
database_cross_reference: Wikipedia:Neurotransmitter
has OBO namespace: chebi_ontology
has_related_synonym: neurotransmitters
id: CHEBI:25512
in_subset: 3 STAR

Axiom
annotated source: neurotransmitter
annotated property: has_related_synonym
annotated target: neurotransmitters
database_cross_reference: ChEBI

nitrogen atom
type: Class
subclass of: nonmetal atom
subclass of: pnictogen
subclass of: Restriction
  on property: has role
  some values from: macronutrient
charge: 0
formula: N
mass: 14.007
monoisotopicmass: 14.00307
database_cross_reference: WebElements:N
has_exact_synonym: nitrogen
has OBO namespace: chebi_ontology
has_related_synonym: 7N
has_related_synonym: N
has_related_synonym: Stickstoff
has_related_synonym: azote
has_related_synonym: nitrogen
has_related_synonym: nitrogeno
id: CHEBI:25555
in_subset: 3 STAR

Axiom
annotated source: nitrogen atom
annotated property: has_exact_synonym
annotated target: nitrogen
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nitrogen atom
annotated property: has_related_synonym
annotated target: 7N
database_cross_reference: IUPAC

Axiom
annotated source: nitrogen atom
annotated property: has_related_synonym
annotated target: N
database_cross_reference: IUPAC

Axiom
annotated source: nitrogen atom
annotated property: has_related_synonym
annotated target: Stickstoff
database_cross_reference: ChEBI

Axiom
annotated source: nitrogen atom
annotated property: has_related_synonym
annotated target: azote
database_cross_reference: IUPAC

Axiom
annotated source: nitrogen atom
annotated property: has_related_synonym
annotated target: nitrogen
database_cross_reference: ChEBI

Axiom
annotated source: nitrogen atom
annotated property: has_related_synonym
annotated target: nitrogeno
database_cross_reference: ChEBI

nonmetal atom
type: Class
subclass of: atom
has_exact_synonym: nonmetal
has OBO namespace: chebi_ontology
has_related_synonym: Nichtmetall
has_related_synonym: Nichtmetalle
has_related_synonym: no metal
has_related_synonym: no metales
has_related_synonym: non-metal
has_related_synonym: non-metaux
has_related_synonym: nonmetal
has_related_synonym: nonmetals
id: CHEBI:25585
in_subset: 3 STAR

Axiom
annotated source: nonmetal atom
annotated property: has_exact_synonym
annotated target: nonmetal
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: Nichtmetall
database_cross_reference: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: Nichtmetalle
database_cross_reference: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: no metal
database_cross_reference: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: no metales
database_cross_reference: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: non-metal
database_cross_reference: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: non-metaux
database_cross_reference: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: nonmetal
database_cross_reference: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: nonmetals
database_cross_reference: ChEBI

organic anion
type: Class
subclass of: anion
subclass of: organic ion
definition: Any organic ion with a net negative charge.
has OBO namespace: chebi_ontology
has_related_synonym: organic anions
id: CHEBI:25696
in_subset: 3 STAR

Axiom
annotated source: organic anion
annotated property: has_related_synonym
annotated target: organic anions
database_cross_reference: ChEBI

organic cation
type: Class
subclass of: organic ion
subclass of: cation
definition: Any organic ion with a net positive charge.
has OBO namespace: chebi_ontology
has_related_synonym: organic cations
id: CHEBI:25697
in_subset: 3 STAR

Axiom
annotated source: organic cation
annotated property: has_related_synonym
annotated target: organic cations
database_cross_reference: ChEBI

organic ion
type: Class
subclass of: ion
subclass of: organic molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: organic ions
id: CHEBI:25699
in_subset: 3 STAR

Axiom
annotated source: organic ion
annotated property: has_related_synonym
annotated target: organic ions
database_cross_reference: ChEBI

organic oxide
type: Class
subclass of: oxide
subclass of: organic molecule
definition: An oxide in which the oxygen atom is bonded to a carbon atom.
has OBO namespace: chebi_ontology
has_related_synonym: organic oxides
id: CHEBI:25701
in_subset: 3 STAR

Axiom
annotated source: organic oxide
annotated property: has_related_synonym
annotated target: organic oxides
database_cross_reference: ChEBI

organic sulfate
type: Class
subclass of: sulfates
subclass of: Restriction
  on property: is conjugate acid of
  some values from: organosulfate oxoanion
definition: Compounds of the general formula SO3HOR where R is an organyl group
has OBO namespace: chebi_ontology
has_related_synonym: organic sulfates
id: CHEBI:25704
in_subset: 3 STAR

Axiom
annotated source: organic sulfate
annotated property: has_related_synonym
annotated target: organic sulfates
database_cross_reference: ChEBI

aliphatic alcohol
type: Class
subclass of: alcohol
definition: An alcohol derived from an aliphatic compound.
charge: 0
formula: HOR
mass: 17.007
monoisotopicmass: 17.00274
smiles: O*
database_cross_reference: KEGG:C02525
has_exact_synonym: Aliphatic alcohol
has OBO namespace: chebi_ontology
has_related_synonym: aliphatic alcohols
has_related_synonym: an aliphatic alcohol
id: CHEBI:2571
in_subset: 3 STAR

Axiom
annotated source: aliphatic alcohol
annotated property: has_exact_synonym
annotated target: Aliphatic alcohol
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: aliphatic alcohol
annotated property: has_related_synonym
annotated target: aliphatic alcohols
database_cross_reference: ChEBI

Axiom
annotated source: aliphatic alcohol
annotated property: has_related_synonym
annotated target: an aliphatic alcohol
database_cross_reference: UniProt

oxide
type: Class
subclass of: oxygen molecular entity
subclass of: heteroatomic molecular entity
definition: An oxide is a chemical compound of oxygen with other chemical elements.
has_exact_synonym: oxide
has OBO namespace: chebi_ontology
has_related_synonym: oxides
id: CHEBI:25741
in_subset: 3 STAR

Axiom
annotated source: oxide
annotated property: has_exact_synonym
annotated target: oxide
database_cross_reference: ChEBI

Axiom
annotated source: oxide
annotated property: has_related_synonym
annotated target: oxides
database_cross_reference: ChEBI

oxygen atom
type: Class
subclass of: nonmetal atom
subclass of: chalcogen
subclass of: Restriction
  on property: has role
  some values from: macronutrient
charge: 0
formula: O
inchi: InChI=1S/O
inchikey: QVGXLLKOCUKJST-UHFFFAOYSA-N
mass: 15.99940
monoisotopicmass: 15.99491
smiles: [O]
database_cross_reference: KEGG:C00007
database_cross_reference: WebElements:O
has_exact_synonym: oxygen
has OBO namespace: chebi_ontology
has_related_synonym: 8O
has_related_synonym: O
has_related_synonym: Sauerstoff
has_related_synonym: oxigeno
has_related_synonym: oxygen
has_related_synonym: oxygene
id: CHEBI:25805
in_subset: 3 STAR

Axiom
annotated source: oxygen atom
annotated property: has_exact_synonym
annotated target: oxygen
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: oxygen atom
annotated property: has_related_synonym
annotated target: 8O
database_cross_reference: IUPAC

Axiom
annotated source: oxygen atom
annotated property: has_related_synonym
annotated target: O
database_cross_reference: IUPAC

Axiom
annotated source: oxygen atom
annotated property: has_related_synonym
annotated target: Sauerstoff
database_cross_reference: ChEBI

Axiom
annotated source: oxygen atom
annotated property: has_related_synonym
annotated target: oxigeno
database_cross_reference: ChEBI

Axiom
annotated source: oxygen atom
annotated property: has_related_synonym
annotated target: oxygen
database_cross_reference: ChEBI

Axiom
annotated source: oxygen atom
annotated property: has_related_synonym
annotated target: oxygene
database_cross_reference: ChEBI

oxygen molecular entity
type: Class
subclass of: chalcogen molecular entity
subclass of: Restriction
  on property: has part
  some values from: oxygen atom
has_exact_synonym: oxygen molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: oxygen molecular entities
id: CHEBI:25806
in_subset: 3 STAR

Axiom
annotated source: oxygen molecular entity
annotated property: has_exact_synonym
annotated target: oxygen molecular entity
database_cross_reference: ChEBI

Axiom
annotated source: oxygen molecular entity
annotated property: has_related_synonym
annotated target: oxygen molecular entities
database_cross_reference: ChEBI

peptide hormone
type: Class
subclass of: peptide
subclass of: Restriction
  on property: has role
  some values from: hormone
definition: Any peptide with hormonal activity in animals, whether endocrine, neuroendocrine, or paracrine.
has OBO namespace: chebi_ontology
has_related_synonym: peptide hormones
has_related_synonym: polypeptide hormone
id: CHEBI:25905
in_subset: 3 STAR

Axiom
annotated source: peptide hormone
annotated property: has_related_synonym
annotated target: peptide hormones
database_cross_reference: ChEBI

Axiom
annotated source: peptide hormone
annotated property: has_related_synonym
annotated target: polypeptide hormone
database_cross_reference: ChEBI

phosphate
type: Class
subclass of: phosphoric acid derivative
definition: Salts and esters of phosphoric and oligophosphoric acids and their chalcogen analogues. In inorganic chemistry, the term is also used to describe anionic coordination entities with phosphorus as central atom.
has_exact_synonym: phosphates
has OBO namespace: chebi_ontology
has_related_synonym: phosphates
id: CHEBI:26020
in_subset: 3 STAR

Axiom
annotated source: phosphate
annotated property: has_exact_synonym
annotated target: phosphates
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: phosphate
annotated property: has_related_synonym
annotated target: phosphates
database_cross_reference: ChEBI

phosphoric acid
type: Class
subclass of: phosphoric acids
subclass of: Restriction
  on property: has role
  some values from: fertilizer
subclass of: Restriction
  on property: has role
  some values from: solvent
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: has role
  some values from: algal metabolite
subclass of: Restriction
  on property: is conjugate acid of
  some values from: dihydrogenphosphate
definition: A phosphorus oxoacid that consists of one oxo and three hydroxy groups joined covalently to a central phosphorus atom.
charge: 0
formula: H3O4P
inchi: InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)
inchikey: NBIIXXVUZAFLBC-UHFFFAOYSA-N
mass: 97.99520
monoisotopicmass: 97.97690
smiles: [H]OP(=O)(O[H])O[H]
database_cross_reference: Beilstein:1921286
database_cross_reference: CAS:7664-38-2
database_cross_reference: Drug_Central:4478
database_cross_reference: Gmelin:2000
database_cross_reference: HMDB:HMDB0002142
database_cross_reference: KEGG:C00009
database_cross_reference: KEGG:D05467
database_cross_reference: KNApSAcK:C00007408
database_cross_reference: PMID:11455380
database_cross_reference: PMID:15630224
database_cross_reference: PMID:17439666
database_cross_reference: PMID:17518491
database_cross_reference: PMID:22282755
database_cross_reference: PMID:22333268
database_cross_reference: PMID:22381614
database_cross_reference: PMID:22401268
database_cross_reference: Reaxys:1921286
database_cross_reference: Wikipedia:Phosphoric_Acid
has_exact_synonym: Phosphoric acid
has_exact_synonym: phosphoric acid
has_exact_synonym: tetraoxophosphoric acid
has_exact_synonym: trihydrogen tetraoxophosphate(3-)
has_exact_synonym: trihydroxidooxidophosphorus
has OBO namespace: chebi_ontology
has_related_synonym: H3PO4
has_related_synonym: Orthophosphoric acid
has_related_synonym: Phosphate
has_related_synonym: Phosphorsaeure
has_related_synonym: Phosphorsaeureloesungen
has_related_synonym: [PO(OH)3]
has_related_synonym: acide phosphorique
has_related_synonym: acidum phosphoricum
has_related_synonym: orthophosphoric acid
id: CHEBI:26078
in_subset: 3 STAR

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: Beilstein:1921286
source: Beilstein

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: CAS:7664-38-2
source: ChemIDplus

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: CAS:7664-38-2
source: KEGG COMPOUND

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: CAS:7664-38-2
source: NIST Chemistry WebBook

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: Drug_Central:4478
source: DrugCentral

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: Gmelin:2000
source: Gmelin

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: PMID:11455380
source: Europe PMC

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: PMID:15630224
source: Europe PMC

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: PMID:17439666
source: Europe PMC

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: PMID:17518491
source: Europe PMC

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: PMID:22282755
source: Europe PMC

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: PMID:22333268
source: Europe PMC

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: PMID:22381614
source: Europe PMC

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: PMID:22401268
source: Europe PMC

Axiom
annotated source: phosphoric acid
annotated property: database_cross_reference
annotated target: Reaxys:1921286
source: Reaxys

Axiom
annotated source: phosphoric acid
annotated property: has_exact_synonym
annotated target: Phosphoric acid
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: phosphoric acid
annotated property: has_exact_synonym
annotated target: phosphoric acid
database_cross_reference: IUPAC

Axiom
annotated source: phosphoric acid
annotated property: has_exact_synonym
annotated target: tetraoxophosphoric acid
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: phosphoric acid
annotated property: has_exact_synonym
annotated target: trihydrogen tetraoxophosphate(3-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: phosphoric acid
annotated property: has_exact_synonym
annotated target: trihydroxidooxidophosphorus
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: phosphoric acid
annotated property: has_related_synonym
annotated target: H3PO4
database_cross_reference: IUPAC

Axiom
annotated source: phosphoric acid
annotated property: has_related_synonym
annotated target: Orthophosphoric acid
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: phosphoric acid
annotated property: has_related_synonym
annotated target: Phosphate
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: phosphoric acid
annotated property: has_related_synonym
annotated target: Phosphorsaeure
database_cross_reference: ChEBI

Axiom
annotated source: phosphoric acid
annotated property: has_related_synonym
annotated target: Phosphorsaeureloesungen
database_cross_reference: ChEBI

Axiom
annotated source: phosphoric acid
annotated property: has_related_synonym
annotated target: [PO(OH)3]
database_cross_reference: IUPAC

Axiom
annotated source: phosphoric acid
annotated property: has_related_synonym
annotated target: acide phosphorique
database_cross_reference: ChEBI

Axiom
annotated source: phosphoric acid
annotated property: has_related_synonym
annotated target: acidum phosphoricum
database_cross_reference: ChEBI

Axiom
annotated source: phosphoric acid
annotated property: has_related_synonym
annotated target: orthophosphoric acid
database_cross_reference: NIST_Chemistry_WebBook

phosphoric acid derivative
type: Class
subclass of: phosphorus oxoacid derivative
subclass of: Restriction
  on property: has functional parent
  some values from: phosphoric acid
has OBO namespace: chebi_ontology
id: CHEBI:26079
in_subset: 1 STAR

phosphorus molecular entity
type: Class
subclass of: pnictogen molecular entity
subclass of: Restriction
  on property: has part
  some values from: phosphorus atom
has OBO namespace: chebi_ontology
has_related_synonym: phosphorus molecular entities
id: CHEBI:26082
in_subset: 3 STAR

Axiom
annotated source: phosphorus molecular entity
annotated property: has_related_synonym
annotated target: phosphorus molecular entities
database_cross_reference: ChEBI

porphyrins
type: Class
subclass of: cyclic tetrapyrrole
subclass of: Restriction
  on property: has role
  some values from: cofactor
definition: Natural pigments containing a fundamental skeleton of four pyrrole nuclei united through the alpha-positions by four methine groups to form a macrocyclic structure.
database_cross_reference: Wikipedia:Porphyrin
has_exact_synonym: porphyrins
has OBO namespace: chebi_ontology
id: CHEBI:26214
in_subset: 3 STAR

Axiom
annotated source: porphyrins
annotated property: has_exact_synonym
annotated target: porphyrins
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

steroid hormone
type: Class
subclass of: steroid
subclass of: Restriction
  on property: has role
  some values from: hormone
definition: Any steroid that acts as hormone.
has OBO namespace: chebi_ontology
has_related_synonym: Steroidhormon
has_related_synonym: Steroidhormone
has_related_synonym: hormona esteroide
has_related_synonym: hormonas esteroideas
has_related_synonym: hormone steroide
has_related_synonym: hormones steroides
has_related_synonym: steroid hormones
id: CHEBI:26764
in_subset: 3 STAR

Axiom
annotated source: steroid hormone
annotated property: has_related_synonym
annotated target: Steroidhormon
database_cross_reference: ChEBI

Axiom
annotated source: steroid hormone
annotated property: has_related_synonym
annotated target: Steroidhormone
database_cross_reference: ChEBI

Axiom
annotated source: steroid hormone
annotated property: has_related_synonym
annotated target: hormona esteroide
database_cross_reference: ChEBI

Axiom
annotated source: steroid hormone
annotated property: has_related_synonym
annotated target: hormonas esteroideas
database_cross_reference: ChEBI

Axiom
annotated source: steroid hormone
annotated property: has_related_synonym
annotated target: hormone steroide
database_cross_reference: ChEBI

Axiom
annotated source: steroid hormone
annotated property: has_related_synonym
annotated target: hormones steroides
database_cross_reference: ChEBI

Axiom
annotated source: steroid hormone
annotated property: has_related_synonym
annotated target: steroid hormones
database_cross_reference: ChEBI

sulfuric ester
type: Class
subclass of: ester
subclass of: sulfuric acid derivative
definition: An ester of an alcohol and sulfuric acid.
charge: 0
formula: O4SR2
mass: 96.06300
monoisotopicmass: 95.95173
smiles: [*]OS(=O)(=O)O[*]
has OBO namespace: chebi_ontology
has_related_synonym: sulfate ester
has_related_synonym: sulfuric acid ester
has_related_synonym: sulfuric acid esters
id: CHEBI:26819
in_subset: 3 STAR

Axiom
annotated source: sulfuric ester
annotated property: has_related_synonym
annotated target: sulfate ester
database_cross_reference: ChEBI

Axiom
annotated source: sulfuric ester
annotated property: has_related_synonym
annotated target: sulfuric acid ester
database_cross_reference: ChEBI

Axiom
annotated source: sulfuric ester
annotated property: has_related_synonym
annotated target: sulfuric acid esters
database_cross_reference: ChEBI

sulfates
type: Class
subclass of: sulfuric acid derivative
definition: Salts and esters of sulfuric acid
has_exact_synonym: sulfates
has OBO namespace: chebi_ontology
has_related_synonym: sulfuric acid derivative
has_related_synonym: sulphates
id: CHEBI:26820
in_subset: 3 STAR

Axiom
annotated source: sulfates
annotated property: has_exact_synonym
annotated target: sulfates
database_cross_reference: ChEBI

Axiom
annotated source: sulfates
annotated property: has_related_synonym
annotated target: sulfuric acid derivative
database_cross_reference: ChEBI

Axiom
annotated source: sulfates
annotated property: has_related_synonym
annotated target: sulphates
database_cross_reference: ChEBI

sulfur atom
type: Class
subclass of: nonmetal atom
subclass of: chalcogen
subclass of: Restriction
  on property: has role
  some values from: macronutrient
charge: 0
formula: S
inchi: InChI=1S/S
inchikey: NINIDFKCEFEMDL-UHFFFAOYSA-N
mass: 32.06600
monoisotopicmass: 31.97207
smiles: [S]
database_cross_reference: CAS:7704-34-9
database_cross_reference: KEGG:C00087
database_cross_reference: KEGG:D06527
database_cross_reference: PPDB:605
database_cross_reference: WebElements:S
has_exact_synonym: sulfur
has OBO namespace: chebi_ontology
has_related_synonym: 16S
has_related_synonym: Elemental sulfur
has_related_synonym: S
has_related_synonym: Schwefel
has_related_synonym: azufre
has_related_synonym: soufre
has_related_synonym: sulfur
has_related_synonym: sulphur
has_related_synonym: theion
id: CHEBI:26833
in_subset: 3 STAR

Axiom
annotated source: sulfur atom
annotated property: database_cross_reference
annotated target: CAS:7704-34-9
source: ChemIDplus

Axiom
annotated source: sulfur atom
annotated property: database_cross_reference
annotated target: CAS:7704-34-9
source: NIST Chemistry WebBook

Axiom
annotated source: sulfur atom
annotated property: has_exact_synonym
annotated target: sulfur
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sulfur atom
annotated property: has_related_synonym
annotated target: 16S
database_cross_reference: IUPAC

Axiom
annotated source: sulfur atom
annotated property: has_related_synonym
annotated target: Elemental sulfur
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: sulfur atom
annotated property: has_related_synonym
annotated target: S
database_cross_reference: IUPAC

Axiom
annotated source: sulfur atom
annotated property: has_related_synonym
annotated target: S
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: sulfur atom
annotated property: has_related_synonym
annotated target: Schwefel
database_cross_reference: ChEBI

Axiom
annotated source: sulfur atom
annotated property: has_related_synonym
annotated target: azufre
database_cross_reference: ChEBI

Axiom
annotated source: sulfur atom
annotated property: has_related_synonym
annotated target: soufre
database_cross_reference: ChEBI

Axiom
annotated source: sulfur atom
annotated property: has_related_synonym
annotated target: sulfur
database_cross_reference: ChEBI

Axiom
annotated source: sulfur atom
annotated property: has_related_synonym
annotated target: sulfur
database_cross_reference: UniProt

Axiom
annotated source: sulfur atom
annotated property: has_related_synonym
annotated target: sulphur
database_cross_reference: ChEBI

Axiom
annotated source: sulfur atom
annotated property: has_related_synonym
annotated target: theion
database_cross_reference: IUPAC

sulfur molecular entity
type: Class
subclass of: chalcogen molecular entity
subclass of: Restriction
  on property: has part
  some values from: sulfur atom
has_exact_synonym: sulfur molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: sulfur molecular entities
id: CHEBI:26835
in_subset: 3 STAR

Axiom
annotated source: sulfur molecular entity
annotated property: has_exact_synonym
annotated target: sulfur molecular entity
database_cross_reference: ChEBI

Axiom
annotated source: sulfur molecular entity
annotated property: has_related_synonym
annotated target: sulfur molecular entities
database_cross_reference: ChEBI

sulfuric acid
type: Class
subclass of: sulfur oxoacid
subclass of: Restriction
  on property: has role
  some values from: catalyst
subclass of: Restriction
  on property: is conjugate acid of
  some values from: hydrogensulfate
definition: A sulfur oxoacid that consists of two oxo and two hydroxy groups joined covalently to a central sulfur atom.
charge: 0
formula: H2O4S
inchi: InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)
inchikey: QAOWNCQODCNURD-UHFFFAOYSA-N
mass: 98.07948
monoisotopicmass: 97.96738
smiles: [H]OS(=O)(=O)O[H]
database_cross_reference: CAS:7664-93-9
database_cross_reference: Gmelin:2122
database_cross_reference: KEGG:C00059
database_cross_reference: KEGG:D05963
database_cross_reference: KNApSAcK:C00007530
database_cross_reference: MolBase:4
database_cross_reference: PMID:13568755
database_cross_reference: PMID:16122922
database_cross_reference: PMID:19397353
database_cross_reference: PMID:22047659
database_cross_reference: PMID:22136045
database_cross_reference: PMID:22204399
database_cross_reference: PMID:22267186
database_cross_reference: PMID:22296037
database_cross_reference: PMID:22364556
database_cross_reference: PMID:22435616
database_cross_reference: PPDB:606
database_cross_reference: Reaxys:2037554
database_cross_reference: Wikipedia:Sulfuric_acid
has_exact_synonym: Sulfuric acid
has_exact_synonym: dihydrogen tetraoxosulfate
has_exact_synonym: dihydroxidodioxidosulfur
has_exact_synonym: hydrogen tetraoxosulfate(2-)
has_exact_synonym: hydrogen tetraoxosulfate(VI)
has_exact_synonym: sulfuric acid
has_exact_synonym: tetraoxosulfuric acid
has OBO namespace: chebi_ontology
has_related_synonym: Acide sulfurique
has_related_synonym: Acido sulfurico
has_related_synonym: Acidum sulfuricum
has_related_synonym: H2SO4
has_related_synonym: Schwefelsaeureloesungen
has_related_synonym: [S(OH)2O2]
has_related_synonym: [SO2(OH)2]
has_related_synonym: sulphuric acid
id: CHEBI:26836
in_subset: 3 STAR

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: CAS:7664-93-9
source: ChemIDplus

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: CAS:7664-93-9
source: KEGG COMPOUND

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: CAS:7664-93-9
source: NIST Chemistry WebBook

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: Gmelin:2122
source: Gmelin

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: PMID:13568755
source: Europe PMC

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: PMID:16122922
source: Europe PMC

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: PMID:19397353
source: Europe PMC

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: PMID:22047659
source: Europe PMC

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: PMID:22136045
source: Europe PMC

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: PMID:22204399
source: Europe PMC

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: PMID:22267186
source: Europe PMC

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: PMID:22296037
source: Europe PMC

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: PMID:22364556
source: Europe PMC

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: PMID:22435616
source: Europe PMC

Axiom
annotated source: sulfuric acid
annotated property: database_cross_reference
annotated target: Reaxys:2037554
source: Reaxys

Axiom
annotated source: sulfuric acid
annotated property: has_exact_synonym
annotated target: Sulfuric acid
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: sulfuric acid
annotated property: has_exact_synonym
annotated target: dihydrogen tetraoxosulfate
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sulfuric acid
annotated property: has_exact_synonym
annotated target: dihydroxidodioxidosulfur
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sulfuric acid
annotated property: has_exact_synonym
annotated target: hydrogen tetraoxosulfate(2-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sulfuric acid
annotated property: has_exact_synonym
annotated target: hydrogen tetraoxosulfate(VI)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sulfuric acid
annotated property: has_exact_synonym
annotated target: sulfuric acid
database_cross_reference: ChEBI

Axiom
annotated source: sulfuric acid
annotated property: has_exact_synonym
annotated target: sulfuric acid
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sulfuric acid
annotated property: has_exact_synonym
annotated target: tetraoxosulfuric acid
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sulfuric acid
annotated property: has_related_synonym
annotated target: Acide sulfurique
database_cross_reference: ChemIDplus

Axiom
annotated source: sulfuric acid
annotated property: has_related_synonym
annotated target: Acido sulfurico
database_cross_reference: ChemIDplus

Axiom
annotated source: sulfuric acid
annotated property: has_related_synonym
annotated target: Acidum sulfuricum
database_cross_reference: ChemIDplus

Axiom
annotated source: sulfuric acid
annotated property: has_related_synonym
annotated target: H2SO4
database_cross_reference: IUPAC

Axiom
annotated source: sulfuric acid
annotated property: has_related_synonym
annotated target: Schwefelsaeureloesungen
database_cross_reference: ChemIDplus

Axiom
annotated source: sulfuric acid
annotated property: has_related_synonym
annotated target: [S(OH)2O2]
database_cross_reference: MolBase

Axiom
annotated source: sulfuric acid
annotated property: has_related_synonym
annotated target: [SO2(OH)2]
database_cross_reference: IUPAC

Axiom
annotated source: sulfuric acid
annotated property: has_related_synonym
annotated target: sulphuric acid
database_cross_reference: MolBase

tetrapyrrole
type: Class
subclass of: heteroarene
subclass of: polypyrrole
definition: A natural pigment containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
has_exact_synonym: tetrapyrrole
has_exact_synonym: tetrapyrroles
has OBO namespace: chebi_ontology
has_related_synonym: a tetrapyrrole
id: CHEBI:26932
in_subset: 3 STAR

Axiom
annotated source: tetrapyrrole
annotated property: has_exact_synonym
annotated target: tetrapyrrole
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: tetrapyrrole
annotated property: has_exact_synonym
annotated target: tetrapyrroles
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: tetrapyrrole
annotated property: has_related_synonym
annotated target: a tetrapyrrole
database_cross_reference: UniProt

micronutrient
type: Class
subclass of: nutrient
definition: Any nutrient required in small quantities by organisms throughout their life in order to orchestrate a range of physiological functions.
database_cross_reference: Wikipedia:Micronutrient
has OBO namespace: chebi_ontology
has_related_synonym: micronutrients
has_related_synonym: trace elements
id: CHEBI:27027
in_subset: 3 STAR

Axiom
annotated source: micronutrient
annotated property: has_related_synonym
annotated target: micronutrients
database_cross_reference: ChEBI

Axiom
annotated source: micronutrient
annotated property: has_related_synonym
annotated target: trace elements
database_cross_reference: ChEBI

tryptamines
type: Class
subclass of: indoles
definition: Tryptamine and its substitution derivatives.
has OBO namespace: chebi_ontology
id: CHEBI:27162
in_subset: 3 STAR

organic heterobicyclic compound
type: Class
subclass of: heterobicyclic compound
subclass of: organic heteropolycyclic compound
has OBO namespace: chebi_ontology
has_related_synonym: heterobicyclic compounds
has_related_synonym: organic heterobicyclic compounds
id: CHEBI:27171
in_subset: 3 STAR

Axiom
annotated source: organic heterobicyclic compound
annotated property: has_related_synonym
annotated target: heterobicyclic compounds
database_cross_reference: ChEBI

Axiom
annotated source: organic heterobicyclic compound
annotated property: has_related_synonym
annotated target: organic heterobicyclic compounds
database_cross_reference: ChEBI

univalent carboacyl group
type: Class
subclass of: carboacyl group
definition: A univalent carboacyl group is a group formed by loss of OH from the carboxy group of a carboxylic acid.
has OBO namespace: chebi_ontology
has_related_synonym: univalent acyl group
has_related_synonym: univalent carboacyl groups
has_related_synonym: univalent carboxylic acyl groups
id: CHEBI:27207
in_subset: 3 STAR

Axiom
annotated source: univalent carboacyl group
annotated property: has_related_synonym
annotated target: univalent acyl group
database_cross_reference: ChEBI

Axiom
annotated source: univalent carboacyl group
annotated property: has_related_synonym
annotated target: univalent carboacyl groups
database_cross_reference: ChEBI

Axiom
annotated source: univalent carboacyl group
annotated property: has_related_synonym
annotated target: univalent carboxylic acyl groups
database_cross_reference: ChEBI

zwitterion
type: Class
subclass of: dipolar compound
definition: A neutral compound having formal unit electrical charges of opposite sign on non-adjacent atoms. Sometimes referred to as inner salts, dipolar ions (a misnomer).
has_exact_synonym: zwitterion
has_exact_synonym: zwitterions
has OBO namespace: chebi_ontology
has_related_synonym: compose zwitterionique
has_related_synonym: compuestos zwitterionicos
has_related_synonym: zwitteriones
has_related_synonym: zwitterionic compounds
id: CHEBI:27369
in_subset: 3 STAR

Axiom
annotated source: zwitterion
annotated property: has_exact_synonym
annotated target: zwitterion
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: zwitterion
annotated property: has_exact_synonym
annotated target: zwitterions
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: zwitterion
annotated property: has_related_synonym
annotated target: compose zwitterionique
database_cross_reference: IUPAC

Axiom
annotated source: zwitterion
annotated property: has_related_synonym
annotated target: compuestos zwitterionicos
database_cross_reference: IUPAC

Axiom
annotated source: zwitterion
annotated property: has_related_synonym
annotated target: zwitteriones
database_cross_reference: IUPAC

Axiom
annotated source: zwitterion
annotated property: has_related_synonym
annotated target: zwitterionic compounds
database_cross_reference: IUPAC

carbon atom
type: Class
subclass of: nonmetal atom
subclass of: carbon group element atom
subclass of: Restriction
  on property: has role
  some values from: macronutrient
charge: 0
formula: C
inchi: InChI=1S/C
inchikey: OKTJSMMVPCPJKN-UHFFFAOYSA-N
mass: 12.01070
monoisotopicmass: 12.00000
smiles: [C]
has alternative id: CHEBI:23009
has alternative id: CHEBI:3399
database_cross_reference: CAS:7440-44-0
database_cross_reference: KEGG:C06265
database_cross_reference: WebElements:C
has_exact_synonym: carbon
has OBO namespace: chebi_ontology
has_related_synonym: 6C
has_related_synonym: C
has_related_synonym: Carbon
has_related_synonym: Kohlenstoff
has_related_synonym: carbon
has_related_synonym: carbone
has_related_synonym: carbonium
has_related_synonym: carbono
id: CHEBI:27594
in_subset: 3 STAR

Axiom
annotated source: carbon atom
annotated property: database_cross_reference
annotated target: CAS:7440-44-0
source: ChemIDplus

Axiom
annotated source: carbon atom
annotated property: database_cross_reference
annotated target: CAS:7440-44-0
source: KEGG COMPOUND

Axiom
annotated source: carbon atom
annotated property: has_exact_synonym
annotated target: carbon
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: 6C
database_cross_reference: IUPAC

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: C
database_cross_reference: IUPAC

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: C
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: Carbon
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: Kohlenstoff
database_cross_reference: ChEBI

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: carbon
database_cross_reference: ChEBI

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: carbone
database_cross_reference: ChEBI

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: carbonium
database_cross_reference: ChEBI

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: carbono
database_cross_reference: ChEBI

carbamic acid
type: Class
subclass of: organonitrogen compound
subclass of: carbon oxoacid
subclass of: one-carbon compound
subclass of: Restriction
  on property: has role
  some values from: Escherichia coli metabolite
subclass of: Restriction
  on property: is conjugate acid of
  some values from: carbamate
definition: A one-carbon compound that is ammonia in which one of the hydrogens is replaced by a carboxy group. Although carbamic acid derivatives are common, carbamic acid itself has never been synthesised.
charge: 0
formula: CH3NO2
inchi: InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)
inchikey: KXDHJXZQYSOELW-UHFFFAOYSA-N
mass: 61.04006
monoisotopicmass: 61.01638
smiles: NC(O)=O
has alternative id: CHEBI:22504
has alternative id: CHEBI:23002
has alternative id: CHEBI:3386
has alternative id: CHEBI:44573
database_cross_reference: Beilstein:1734754
database_cross_reference: CAS:463-77-4
database_cross_reference: DrugBank:DB04261
database_cross_reference: Gmelin:130345
database_cross_reference: KEGG:C01563
database_cross_reference: PDBeChem:OUT
database_cross_reference: Wikipedia:Carbamic_acid
has_exact_synonym: CARBAMIC ACID
has_exact_synonym: Carbamic acid
has_exact_synonym: carbamic acid
has OBO namespace: chebi_ontology
has_related_synonym: Aminoameisensaeure
has_related_synonym: Aminoformic acid
has_related_synonym: Carbamate
has_related_synonym: Carbamidsaeure
id: CHEBI:28616
in_subset: 3 STAR

Axiom
annotated source: carbamic acid
annotated property: database_cross_reference
annotated target: Beilstein:1734754
source: Beilstein

Axiom
annotated source: carbamic acid
annotated property: database_cross_reference
annotated target: CAS:463-77-4
source: ChemIDplus

Axiom
annotated source: carbamic acid
annotated property: database_cross_reference
annotated target: CAS:463-77-4
source: KEGG COMPOUND

Axiom
annotated source: carbamic acid
annotated property: database_cross_reference
annotated target: Gmelin:130345
source: Gmelin

Axiom
annotated source: carbamic acid
annotated property: has_exact_synonym
annotated target: CARBAMIC ACID
database_cross_reference: PDBeChem

Axiom
annotated source: carbamic acid
annotated property: has_exact_synonym
annotated target: Carbamic acid
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: carbamic acid
annotated property: has_exact_synonym
annotated target: carbamic acid
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbamic acid
annotated property: has_related_synonym
annotated target: Aminoameisensaeure
database_cross_reference: ChEBI

Axiom
annotated source: carbamic acid
annotated property: has_related_synonym
annotated target: Aminoformic acid
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: carbamic acid
annotated property: has_related_synonym
annotated target: Carbamate
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: carbamic acid
annotated property: has_related_synonym
annotated target: Carbamidsaeure
database_cross_reference: ChEBI

phosphorus atom
type: Class
subclass of: nonmetal atom
subclass of: pnictogen
subclass of: Restriction
  on property: has role
  some values from: macronutrient
charge: 0
formula: P
inchi: InChI=1S/P
inchikey: OAICVXFJPJFONN-UHFFFAOYSA-N
mass: 30.97376
monoisotopicmass: 30.97376
smiles: [P]
has alternative id: CHEBI:26080
has alternative id: CHEBI:8168
database_cross_reference: CAS:7723-14-0
database_cross_reference: Gmelin:16235
database_cross_reference: KEGG:C06262
database_cross_reference: WebElements:P
has_exact_synonym: phosphorus
has OBO namespace: chebi_ontology
has_related_synonym: 15P
has_related_synonym: P
has_related_synonym: Phosphor
has_related_synonym: Phosphorus
has_related_synonym: fosforo
has_related_synonym: phosphore
has_related_synonym: phosphorus
id: CHEBI:28659
in_subset: 3 STAR

Axiom
annotated source: phosphorus atom
annotated property: database_cross_reference
annotated target: CAS:7723-14-0
source: ChemIDplus

Axiom
annotated source: phosphorus atom
annotated property: database_cross_reference
annotated target: CAS:7723-14-0
source: KEGG COMPOUND

Axiom
annotated source: phosphorus atom
annotated property: database_cross_reference
annotated target: Gmelin:16235
source: Gmelin

Axiom
annotated source: phosphorus atom
annotated property: has_exact_synonym
annotated target: phosphorus
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: phosphorus atom
annotated property: has_related_synonym
annotated target: 15P
database_cross_reference: IUPAC

Axiom
annotated source: phosphorus atom
annotated property: has_related_synonym
annotated target: P
database_cross_reference: IUPAC

Axiom
annotated source: phosphorus atom
annotated property: has_related_synonym
annotated target: P
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: phosphorus atom
annotated property: has_related_synonym
annotated target: Phosphor
database_cross_reference: ChEBI

Axiom
annotated source: phosphorus atom
annotated property: has_related_synonym
annotated target: Phosphorus
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: phosphorus atom
annotated property: has_related_synonym
annotated target: fosforo
database_cross_reference: ChEBI

Axiom
annotated source: phosphorus atom
annotated property: has_related_synonym
annotated target: phosphore
database_cross_reference: ChEBI

Axiom
annotated source: phosphorus atom
annotated property: has_related_synonym
annotated target: phosphorus
database_cross_reference: ChEBI

serotonin
type: Class
subclass of: monoamine molecular messenger
subclass of: tryptamines
subclass of: phenols
subclass of: primary amino compound
subclass of: hydroxyindoles
subclass of: Restriction
  on property: has role
  some values from: neurotransmitter
subclass of: Restriction
  on property: has role
  some values from: mouse metabolite
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: has functional parent
  some values from: tryptamine
subclass of: Restriction
  on property: is conjugate base of
  some values from: serotonin(1+)
definition: A primary amino compound that is the 5-hydroxy derivative of tryptamine.
charge: 0
formula: C10H12N2O
inchi: InChI=1S/C10H12N2O/c11-4-3-7-6-12-10-2-1-8(13)5-9(7)10/h1-2,5-6,12-13H,3-4,11H2
inchikey: QZAYGJVTTNCVMB-UHFFFAOYSA-N
mass: 176.215
monoisotopicmass: 176.09496
smiles: C1=CC(=CC=2C(=CNC12)CCN)O
has alternative id: CHEBI:1420
has alternative id: CHEBI:26652
has alternative id: CHEBI:49894
database_cross_reference: Beilstein:143524
database_cross_reference: CAS:50-67-9
database_cross_reference: Gmelin:1861995
database_cross_reference: HMDB:HMDB0000259
database_cross_reference: KEGG:C00780
database_cross_reference: KNApSAcK:C00001429
database_cross_reference: LINCS:LSM-6589
database_cross_reference: MetaCyc:SEROTONIN
database_cross_reference: PDBeChem:SRO
database_cross_reference: PMID:18593914
database_cross_reference: PMID:22770225
database_cross_reference: PMID:24136337
database_cross_reference: Reaxys:143524
database_cross_reference: Wikipedia:Serotonin
has_exact_synonym: 3-(2-aminoethyl)-1H-indol-5-ol
has_exact_synonym: SEROTONIN
has_exact_synonym: Serotonin
has OBO namespace: chebi_ontology
has_related_synonym: 3-(2-Aminoethyl)-1H-indol-5-ol
has_related_synonym: 5-HT
has_related_synonym: 5-Hydroxytryptamine
has_related_synonym: Enteramine
has_related_synonym: serotonine
has_related_synonym: thrombocytin
has_related_synonym: thrombotonin
id: CHEBI:28790
in_subset: 3 STAR

Axiom
annotated source: serotonin
annotated property: database_cross_reference
annotated target: Beilstein:143524
source: Beilstein

Axiom
annotated source: serotonin
annotated property: database_cross_reference
annotated target: CAS:50-67-9
source: ChemIDplus

Axiom
annotated source: serotonin
annotated property: database_cross_reference
annotated target: CAS:50-67-9
source: KEGG COMPOUND

Axiom
annotated source: serotonin
annotated property: database_cross_reference
annotated target: Gmelin:1861995
source: Gmelin

Axiom
annotated source: serotonin
annotated property: database_cross_reference
annotated target: PMID:18593914
source: Europe PMC

Axiom
annotated source: serotonin
annotated property: database_cross_reference
annotated target: PMID:22770225
source: Europe PMC

Axiom
annotated source: serotonin
annotated property: database_cross_reference
annotated target: PMID:24136337
source: Europe PMC

Axiom
annotated source: serotonin
annotated property: database_cross_reference
annotated target: Reaxys:143524
source: Reaxys

Axiom
annotated source: serotonin
annotated property: has_exact_synonym
annotated target: 3-(2-aminoethyl)-1H-indol-5-ol
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: serotonin
annotated property: has_exact_synonym
annotated target: SEROTONIN
database_cross_reference: PDBeChem

Axiom
annotated source: serotonin
annotated property: has_exact_synonym
annotated target: Serotonin
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: serotonin
annotated property: has_related_synonym
annotated target: 3-(2-Aminoethyl)-1H-indol-5-ol
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: serotonin
annotated property: has_related_synonym
annotated target: 5-HT
database_cross_reference: IUPHAR

Axiom
annotated source: serotonin
annotated property: has_related_synonym
annotated target: 5-Hydroxytryptamine
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: serotonin
annotated property: has_related_synonym
annotated target: Enteramine
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: serotonin
annotated property: has_related_synonym
annotated target: serotonine
database_cross_reference: ChEBI

Axiom
annotated source: serotonin
annotated property: has_related_synonym
annotated target: thrombocytin
database_cross_reference: ChemIDplus

Axiom
annotated source: serotonin
annotated property: has_related_synonym
annotated target: thrombotonin
database_cross_reference: ChemIDplus

ammonium
type: Class
subclass of: nitrogen hydride
subclass of: onium cation
subclass of: monovalent inorganic cation
subclass of: Restriction
  on property: has role
  some values from: cofactor
subclass of: Restriction
  on property: has role
  some values from: Saccharomyces cerevisiae metabolite
subclass of: Restriction
  on property: has role
  some values from: Escherichia coli metabolite
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: is conjugate acid of
  some values from: ammonia
definition: An onium cation obtained by protonation of ammonia.
charge: +1
formula: H4N
inchi: InChI=1S/H3N/h1H3/p+1
inchikey: QGZKDVFQNNGYKY-UHFFFAOYSA-O
mass: 18.03850
monoisotopicmass: 18.03383
smiles: [H][N+]([H])([H])[H]
has alternative id: CHEBI:22534
has alternative id: CHEBI:49783
has alternative id: CHEBI:7435
database_cross_reference: CAS:14798-03-9
database_cross_reference: Gmelin:84
database_cross_reference: KEGG:C01342
database_cross_reference: MetaCyc:AMMONIUM
database_cross_reference: MolBase:929
database_cross_reference: PDBeChem:NH4
database_cross_reference: PMID:11319011
database_cross_reference: PMID:11341317
database_cross_reference: PMID:12096804
database_cross_reference: PMID:14512268
database_cross_reference: PMID:14879753
database_cross_reference: PMID:16345391
database_cross_reference: PMID:16903292
database_cross_reference: PMID:17392693
database_cross_reference: PMID:18515490
database_cross_reference: PMID:19199063
database_cross_reference: PMID:19596600
database_cross_reference: PMID:19682559
database_cross_reference: PMID:19716251
database_cross_reference: PMID:21993530
database_cross_reference: PMID:22265469
database_cross_reference: PMID:22524020
database_cross_reference: PMID:22562341
database_cross_reference: PMID:22631217
database_cross_reference: Reaxys:16093784
database_cross_reference: Wikipedia:Ammonium
has_exact_synonym: ammonium
has_exact_synonym: azanium
has OBO namespace: chebi_ontology
has_related_synonym: Ammonium(1+)
has_related_synonym: NH4(+)
has_related_synonym: NH4+
has_related_synonym: [NH4](+)
has_related_synonym: ammonium cation
has_related_synonym: ammonium ion
id: CHEBI:28938
in_subset: 3 STAR

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: CAS:14798-03-9
source: ChemIDplus

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: CAS:14798-03-9
source: NIST Chemistry WebBook

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: Gmelin:84
source: Gmelin

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:11319011
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:11341317
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:12096804
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:14512268
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:14879753
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:16345391
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:16903292
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:17392693
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:18515490
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:19199063
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:19596600
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:19682559
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:19716251
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:21993530
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:22265469
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:22524020
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:22562341
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: PMID:22631217
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: database_cross_reference
annotated target: Reaxys:16093784
source: Reaxys

Axiom
annotated source: ammonium
annotated property: has_exact_synonym
annotated target: ammonium
database_cross_reference: ChEBI

Axiom
annotated source: ammonium
annotated property: has_exact_synonym
annotated target: ammonium
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ammonium
annotated property: has_exact_synonym
annotated target: azanium
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: Ammonium(1+)
database_cross_reference: ChemIDplus

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: NH4(+)
database_cross_reference: IUPAC

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: NH4(+)
database_cross_reference: UniProt

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: NH4+
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: [NH4](+)
database_cross_reference: MolBase

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: ammonium cation
database_cross_reference: ChemIDplus

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: ammonium ion
database_cross_reference: PDBeChem

chlorophyll
type: Class
subclass of: magnesium porphyrin
subclass of: Restriction
  on property: is conjugate acid of
  some values from: chlorophyll(1-)
definition: A family of magnesium porphyrins, defined by the presence of a fifth ring beyond the four pyrrole-like rings. The rings can have various side chains which usually include a long phytol chain.
charge: 0
formula: C49H58MgN4O5R4
mass: 807.316
monoisotopicmass: 806.42576
has alternative id: CHEBI:13973
has alternative id: CHEBI:23161
has alternative id: CHEBI:3630
has alternative id: CHEBI:3635
database_cross_reference: CAS:1406-65-1
database_cross_reference: COMe:MOL000012
database_cross_reference: KEGG:C01793
database_cross_reference: PMID:29286160
has_exact_synonym: Chlorophyll
has_exact_synonym: chlorophyll
has_exact_synonym: chlorophylls
has OBO namespace: chebi_ontology
id: CHEBI:28966
in_subset: 3 STAR

Axiom
annotated source: chlorophyll
annotated property: database_cross_reference
annotated target: CAS:1406-65-1
source: ChemIDplus

Axiom
annotated source: chlorophyll
annotated property: database_cross_reference
annotated target: CAS:1406-65-1
source: KEGG COMPOUND

Axiom
annotated source: chlorophyll
annotated property: database_cross_reference
annotated target: PMID:29286160
source: Europe PMC

Axiom
annotated source: chlorophyll
annotated property: has_exact_synonym
annotated target: Chlorophyll
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: chlorophyll
annotated property: has_exact_synonym
annotated target: chlorophyll
database_cross_reference: JCBN

Axiom
annotated source: chlorophyll
annotated property: has_exact_synonym
annotated target: chlorophylls
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

carboxylic acid anion
type: Class
subclass of: organic anion
subclass of: oxoanion
subclass of: Restriction
  on property: is conjugate base of
  some values from: carboxylic acid
definition: The conjugate base formed when the carboxy group of a carboxylic acid is deprotonated.
charge: -1
formula: CO2R
mass: 44.00950
monoisotopicmass: 43.98983
smiles: [O-]C([*])=O
has alternative id: CHEBI:13626
has alternative id: CHEBI:13945
has alternative id: CHEBI:23026
has alternative id: CHEBI:58657
has OBO namespace: chebi_ontology
has_related_synonym: a carboxylate
has_related_synonym: carboxylic acid anions
has_related_synonym: carboxylic anions
id: CHEBI:29067
in_subset: 3 STAR

Axiom
annotated source: carboxylic acid anion
annotated property: has_related_synonym
annotated target: a carboxylate
database_cross_reference: UniProt

Axiom
annotated source: carboxylic acid anion
annotated property: has_related_synonym
annotated target: carboxylic acid anions
database_cross_reference: ChEBI

Axiom
annotated source: carboxylic acid anion
annotated property: has_related_synonym
annotated target: carboxylic anions
database_cross_reference: ChEBI

azanide
type: Class
subclass of: nitrogen hydride
subclass of: monovalent inorganic anion
subclass of: Restriction
  on property: is conjugate acid of
  some values from: hydridonitrate(2-)
subclass of: Restriction
  on property: is conjugate base of
  some values from: ammonia
charge: -1
formula: H2N
inchi: InChI=1S/H2N/h1H2/q-1
inchikey: HYGWNUKOUCZBND-UHFFFAOYSA-N
mass: 16.02262
monoisotopicmass: 16.01927
smiles: [H][N-][H]
has_exact_synonym: amide
has_exact_synonym: azanide
has_exact_synonym: dihydridonitrate(1-)
has OBO namespace: chebi_ontology
has_related_synonym: NH2(-)
id: CHEBI:29337
in_subset: 3 STAR

Axiom
annotated source: azanide
annotated property: has_exact_synonym
annotated target: amide
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: azanide
annotated property: has_exact_synonym
annotated target: azanide
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: azanide
annotated property: has_exact_synonym
annotated target: dihydridonitrate(1-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: azanide
annotated property: has_related_synonym
annotated target: NH2(-)
database_cross_reference: IUPAC

hydridonitrate(2-)
type: Class
subclass of: nitrogen hydride
subclass of: divalent inorganic anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: azanide
definition: A divalent inorganic anion resulting from the removal of two protons from ammonia.
charge: -2
formula: HN
inchi: InChI=1S/HN/h1H/q-2
inchikey: DZQYTNGKSBCIOE-UHFFFAOYSA-N
mass: 15.01468
monoisotopicmass: 15.01200
smiles: [N--][H]
has_exact_synonym: azanediide
has_exact_synonym: hydridonitrate(2-)
has OBO namespace: chebi_ontology
has_related_synonym: NH(2-)
has_related_synonym: imide
id: CHEBI:29340
in_subset: 3 STAR

Axiom
annotated source: hydridonitrate(2-)
annotated property: has_exact_synonym
annotated target: azanediide
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydridonitrate(2-)
annotated property: has_exact_synonym
annotated target: hydridonitrate(2-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydridonitrate(2-)
annotated property: has_related_synonym
annotated target: NH(2-)
database_cross_reference: IUPAC

Axiom
annotated source: hydridonitrate(2-)
annotated property: has_related_synonym
annotated target: imide
database_cross_reference: IUPAC

methanediide
type: Class
subclass of: hydrocarbyl anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: methanide
charge: -2
formula: CH2
inchi: InChI=1S/CH2/h1H2/q-2
inchikey: PZPOWPOFQLSNJO-UHFFFAOYSA-N
mass: 14.02658
monoisotopicmass: 14.01675
smiles: [H][C--][H]
database_cross_reference: Beilstein:5915711
database_cross_reference: Gmelin:322698
has_exact_synonym: dihydridocarbonate(2-)
has_exact_synonym: methanediide
has OBO namespace: chebi_ontology
has_related_synonym: CH2(2-)
has_related_synonym: [CH2](2-)
id: CHEBI:29360
in_subset: 3 STAR

Axiom
annotated source: methanediide
annotated property: database_cross_reference
annotated target: Beilstein:5915711
source: Beilstein

Axiom
annotated source: methanediide
annotated property: database_cross_reference
annotated target: Gmelin:322698
source: Gmelin

Axiom
annotated source: methanediide
annotated property: has_exact_synonym
annotated target: dihydridocarbonate(2-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: methanediide
annotated property: has_exact_synonym
annotated target: methanediide
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: methanediide
annotated property: has_related_synonym
annotated target: CH2(2-)
database_cross_reference: IUPAC

Axiom
annotated source: methanediide
annotated property: has_related_synonym
annotated target: [CH2](2-)
database_cross_reference: ChEBI

methanide
type: Class
subclass of: hydrocarbyl anion
subclass of: Restriction
  on property: is conjugate acid of
  some values from: methanediide
subclass of: Restriction
  on property: is conjugate base of
  some values from: methane
charge: -1
formula: CH3
inchi: InChI=1S/CH3/h1H3/q-1
inchikey: LGRLWUINFJPLSH-UHFFFAOYSA-N
mass: 15.03452
monoisotopicmass: 15.02402
smiles: [H][C-]([H])[H]
database_cross_reference: Beilstein:1813938
database_cross_reference: CAS:15194-58-8
database_cross_reference: Gmelin:259263
has_exact_synonym: methanide
has_exact_synonym: trihydridocarbonate(1-)
has OBO namespace: chebi_ontology
has_related_synonym: CH3(-)
has_related_synonym: [CH3](-)
has_related_synonym: lambda(2)-methanuide
has_related_synonym: methyl anion
id: CHEBI:29438
in_subset: 3 STAR

Axiom
annotated source: methanide
annotated property: database_cross_reference
annotated target: Beilstein:1813938
source: Beilstein

Axiom
annotated source: methanide
annotated property: database_cross_reference
annotated target: CAS:15194-58-8
source: NIST Chemistry WebBook

Axiom
annotated source: methanide
annotated property: database_cross_reference
annotated target: Gmelin:259263
source: Gmelin

Axiom
annotated source: methanide
annotated property: has_exact_synonym
annotated target: methanide
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: methanide
annotated property: has_exact_synonym
annotated target: trihydridocarbonate(1-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: methanide
annotated property: has_related_synonym
annotated target: CH3(-)
database_cross_reference: IUPAC

Axiom
annotated source: methanide
annotated property: has_related_synonym
annotated target: [CH3](-)
database_cross_reference: ChEBI

Axiom
annotated source: methanide
annotated property: has_related_synonym
annotated target: lambda(2)-methanuide
database_cross_reference: IUPAC

Axiom
annotated source: methanide
annotated property: has_related_synonym
annotated target: methyl anion
database_cross_reference: IUPAC

hydridodioxygen(1+)
type: Class
subclass of: oxygen hydride
subclass of: Restriction
  on property: is conjugate acid of
  some values from: dioxygen
charge: +1
formula: HO2
inchi: InChI=1S/O2/c1-2/p+1
inchikey: MYMOFIZGZYHOMD-UHFFFAOYSA-O
mass: 33.00674
monoisotopicmass: 32.99711
smiles: [H][O+]=O
database_cross_reference: Gmelin:508
has_exact_synonym: dioxidenium
has_exact_synonym: hydridodioxygen(1+)
has OBO namespace: chebi_ontology
has_related_synonym: HO2(+)
has_related_synonym: HOO(+)
has_related_synonym: [HO2](+)
id: CHEBI:29793
in_subset: 3 STAR

Axiom
annotated source: hydridodioxygen(1+)
annotated property: database_cross_reference
annotated target: Gmelin:508
source: Gmelin

Axiom
annotated source: hydridodioxygen(1+)
annotated property: has_exact_synonym
annotated target: dioxidenium
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydridodioxygen(1+)
annotated property: has_exact_synonym
annotated target: hydridodioxygen(1+)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydridodioxygen(1+)
annotated property: has_related_synonym
annotated target: HO2(+)
database_cross_reference: IUPAC

Axiom
annotated source: hydridodioxygen(1+)
annotated property: has_related_synonym
annotated target: HOO(+)
database_cross_reference: ChEBI

Axiom
annotated source: hydridodioxygen(1+)
annotated property: has_related_synonym
annotated target: [HO2](+)
database_cross_reference: ChEBI

photon
type: Class
subclass of: boson
definition: Particle of zero charge, zero rest mass, spin quantum number 1, energy hnu and momentum hnu/c (h is the Planck constant, nu the frequency of radiation and c the speed of light), carrier of electromagnetic force.
charge: 0
mass: 0.0
monoisotopicmass: 0.0
smiles: *
has alternative id: CHEBI:10581
has alternative id: CHEBI:14383
database_cross_reference: KEGG:C00205
has_exact_synonym: photon
has OBO namespace: chebi_ontology
has_related_synonym: Lichtquant
has_related_synonym: Light
has_related_synonym: foton
has_related_synonym: gamma
has_related_synonym: hnu
has_related_synonym: light quantum
id: CHEBI:30212
in_subset: 3 STAR

Axiom
annotated source: photon
annotated property: has_exact_synonym
annotated target: photon
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: Lichtquant
database_cross_reference: ChEBI

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: Light
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: foton
database_cross_reference: ChEBI

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: gamma
database_cross_reference: IUPAC

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: hnu
database_cross_reference: IUPAC

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: hnu
database_cross_reference: UniProt

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: light quantum
database_cross_reference: ChEBI

alcohol
type: Class
subclass of: organic hydroxy compound
definition: A compound in which a hydroxy group, -OH, is attached to a saturated carbon atom.
charge: 0
formula: HOR
mass: 17.007
monoisotopicmass: 17.00274
smiles: O[*]
has alternative id: CHEBI:13804
has alternative id: CHEBI:22288
has alternative id: CHEBI:2553
database_cross_reference: KEGG:C00069
has_exact_synonym: Alcohol
has_exact_synonym: alcohols
has OBO namespace: chebi_ontology
has_related_synonym: an alcohol
id: CHEBI:30879
in_subset: 3 STAR

Axiom
annotated source: alcohol
annotated property: has_exact_synonym
annotated target: Alcohol
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: alcohol
annotated property: has_exact_synonym
annotated target: alcohols
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: alcohol
annotated property: has_related_synonym
annotated target: an alcohol
database_cross_reference: UniProt

amine
type: Class
subclass of: organic amino compound
definition: A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by hydrocarbyl groups.
has alternative id: CHEBI:13814
has alternative id: CHEBI:22474
has alternative id: CHEBI:2641
database_cross_reference: KEGG:C00706
has_exact_synonym: Amine
has_exact_synonym: amines
has OBO namespace: chebi_ontology
has_related_synonym: Amin
has_related_synonym: Substituted amine
id: CHEBI:32952
in_subset: 3 STAR

Axiom
annotated source: amine
annotated property: has_exact_synonym
annotated target: Amine
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: amine
annotated property: has_exact_synonym
annotated target: amines
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: amine
annotated property: has_related_synonym
annotated target: Amin
database_cross_reference: ChEBI

Axiom
annotated source: amine
annotated property: has_related_synonym
annotated target: Substituted amine
database_cross_reference: KEGG_COMPOUND

amide
type: Class
subclass of: nitrogen molecular entity
definition: An amide is a derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
has alternative id: CHEBI:22473
has alternative id: CHEBI:2633
database_cross_reference: KEGG:C00241
has_exact_synonym: Amide
has_exact_synonym: amides
has OBO namespace: chebi_ontology
id: CHEBI:32988
in_subset: 3 STAR

Axiom
annotated source: amide
annotated property: has_exact_synonym
annotated target: Amide
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: amide
annotated property: has_exact_synonym
annotated target: amides
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

application
type: Class
subclass of: role
definition: Intended use of the molecular entity or part thereof by humans.
has OBO namespace: chebi_ontology
id: CHEBI:33232
in_subset: 3 STAR

fundamental particle
type: Class
subclass of: subatomic particle
definition: A particle not known to have substructure.
has_exact_synonym: elementary particle
has OBO namespace: chebi_ontology
has_related_synonym: elementary particles
id: CHEBI:33233
in_subset: 3 STAR

Axiom
annotated source: fundamental particle
annotated property: has_exact_synonym
annotated target: elementary particle
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: fundamental particle
annotated property: has_related_synonym
annotated target: elementary particles
database_cross_reference: ChEBI

coordination entity
type: Class
subclass of: heteroatomic molecular entity
definition: An assembly consisting of a central atom (usually metallic) to which is attached a surrounding array of other groups of atoms (ligands).
has_exact_synonym: coordination entities
has_exact_synonym: coordination entity
has OBO namespace: chebi_ontology
has_related_synonym: coordination compounds
id: CHEBI:33240
in_subset: 3 STAR

Axiom
annotated source: coordination entity
annotated property: has_exact_synonym
annotated target: coordination entities
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: coordination entity
annotated property: has_exact_synonym
annotated target: coordination entity
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: coordination entity
annotated property: has_related_synonym
annotated target: coordination compounds
database_cross_reference: ChEBI

oxoacid derivative
type: Class
subclass of: heteroatomic molecular entity
subclass of: Restriction
  on property: has functional parent
  some values from: oxoacid
has OBO namespace: chebi_ontology
has_related_synonym: oxoacid derivatives
id: CHEBI:33241
in_subset: 3 STAR

Axiom
annotated source: oxoacid derivative
annotated property: has_related_synonym
annotated target: oxoacid derivatives
database_cross_reference: ChEBI

inorganic hydride
type: Class
subclass of: inorganic molecular entity
subclass of: hydrides
has OBO namespace: chebi_ontology
has_related_synonym: inorganic hydrides
id: CHEBI:33242
in_subset: 3 STAR

Axiom
annotated source: inorganic hydride
annotated property: has_related_synonym
annotated target: inorganic hydrides
database_cross_reference: ChEBI

organic fundamental parent
type: Class
subclass of: organic hydride
subclass of: organic molecular entity
definition: An organic fundamental parent is a structure used as a basis for substitutive names in organic nomenclature, containing, in addition to one or more hydrogen atoms, a single atom of an element, a number of atoms (alike or different) linked together to form an unbranched chain, a monocyclic or polycyclic ring system, or a ring assembly or ring/chain system.
has OBO namespace: chebi_ontology
has_related_synonym: organic fundamental parents
has_related_synonym: organic parent hydrides
id: CHEBI:33245
in_subset: 3 STAR

Axiom
annotated source: organic fundamental parent
annotated property: has_related_synonym
annotated target: organic fundamental parents
database_cross_reference: ChEBI

Axiom
annotated source: organic fundamental parent
annotated property: has_related_synonym
annotated target: organic parent hydrides
database_cross_reference: ChEBI

inorganic group
type: Class
subclass of: group
definition: Any substituent group which does not contain carbon.
has OBO namespace: chebi_ontology
has_related_synonym: inorganic groups
id: CHEBI:33246
in_subset: 3 STAR

Axiom
annotated source: inorganic group
annotated property: has_related_synonym
annotated target: inorganic groups
database_cross_reference: ChEBI

organic group
type: Class
subclass of: molecular entity
subclass of: group
subclass of: Restriction
  on property: is substituent group from
  some values from: organic molecular entity
definition: Any substituent group or skeleton containing carbon.
has OBO namespace: chebi_ontology
has_related_synonym: organic groups
id: CHEBI:33247
in_subset: 3 STAR

Axiom
annotated source: organic group
annotated property: has_related_synonym
annotated target: organic groups
database_cross_reference: ChEBI

organyl group
type: Class
subclass of: organic univalent group
definition: Any organic substituent group, regardless of functional type, having one free valence at a carbon atom.
has_exact_synonym: organyl group
has_exact_synonym: organyl groups
has OBO namespace: chebi_ontology
has_related_synonym: groupe organyle
has_related_synonym: grupo organilo
has_related_synonym: grupos organilo
id: CHEBI:33249
in_subset: 3 STAR

Axiom
annotated source: organyl group
annotated property: has_exact_synonym
annotated target: organyl group
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: organyl group
annotated property: has_exact_synonym
annotated target: organyl groups
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: organyl group
annotated property: has_related_synonym
annotated target: groupe organyle
database_cross_reference: IUPAC

Axiom
annotated source: organyl group
annotated property: has_related_synonym
annotated target: grupo organilo
database_cross_reference: IUPAC

Axiom
annotated source: organyl group
annotated property: has_related_synonym
annotated target: grupos organilo
database_cross_reference: IUPAC

atom
type: Class
subclass of: chemical entity
subclass of: Restriction
  on property: has part
  some values from: electron
subclass of: Restriction
  on property: has part
  some values from: atomic nucleus
definition: A chemical entity constituting the smallest component of an element having the chemical properties of the element.
has alternative id: CHEBI:22671
has alternative id: CHEBI:23907
has_exact_synonym: atom
has OBO namespace: chebi_ontology
has_related_synonym: atome
has_related_synonym: atomo
has_related_synonym: atoms
has_related_synonym: atomus
has_related_synonym: element
has_related_synonym: elements
id: CHEBI:33250
in_subset: 3 STAR

Axiom
annotated source: atom
annotated property: has_exact_synonym
annotated target: atom
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: atom
annotated property: has_related_synonym
annotated target: atome
database_cross_reference: IUPAC

Axiom
annotated source: atom
annotated property: has_related_synonym
annotated target: atomo
database_cross_reference: IUPAC

Axiom
annotated source: atom
annotated property: has_related_synonym
annotated target: atoms
database_cross_reference: ChEBI

Axiom
annotated source: atom
annotated property: has_related_synonym
annotated target: atomus
database_cross_reference: ChEBI

Axiom
annotated source: atom
annotated property: has_related_synonym
annotated target: element
database_cross_reference: ChEBI

Axiom
annotated source: atom
annotated property: has_related_synonym
annotated target: elements
database_cross_reference: ChEBI

atomic nucleus
type: Class
subclass of: nuclear particle
subclass of: Restriction
  on property: has part
  some values from: nucleon
definition: A nucleus is the positively charged central portion of an atom, excluding the orbital electrons.
has_exact_synonym: nucleus
has OBO namespace: chebi_ontology
has_related_synonym: Atomkern
has_related_synonym: Kern
has_related_synonym: noyau
has_related_synonym: noyau atomique
has_related_synonym: nuclei
has_related_synonym: nucleo
has_related_synonym: nucleo atomico
has_related_synonym: nucleus atomi
id: CHEBI:33252
in_subset: 3 STAR

Axiom
annotated source: atomic nucleus
annotated property: has_exact_synonym
annotated target: nucleus
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: Atomkern
database_cross_reference: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: Kern
database_cross_reference: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: noyau
database_cross_reference: IUPAC

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: noyau atomique
database_cross_reference: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: nuclei
database_cross_reference: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: nucleo
database_cross_reference: IUPAC

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: nucleo atomico
database_cross_reference: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: nucleus atomi
database_cross_reference: ChEBI

nucleon
type: Class
subclass of: baryon
subclass of: nuclear particle
definition: Heavy nuclear particle: proton or neutron.
has_exact_synonym: nucleon
has OBO namespace: chebi_ontology
has_related_synonym: Nukleon
has_related_synonym: Nukleonen
has_related_synonym: nucleons
id: CHEBI:33253
in_subset: 3 STAR

Axiom
annotated source: nucleon
annotated property: has_exact_synonym
annotated target: nucleon
database_cross_reference: IUPAC

Axiom
annotated source: nucleon
annotated property: has_exact_synonym
annotated target: nucleon
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nucleon
annotated property: has_related_synonym
annotated target: Nukleon
database_cross_reference: ChEBI

Axiom
annotated source: nucleon
annotated property: has_related_synonym
annotated target: Nukleonen
database_cross_reference: ChEBI

Axiom
annotated source: nucleon
annotated property: has_related_synonym
annotated target: nucleons
database_cross_reference: ChEBI

primary amide
type: Class
subclass of: amide
definition: A derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
has_exact_synonym: primary amide
has_exact_synonym: primary amides
has OBO namespace: chebi_ontology
id: CHEBI:33256
in_subset: 3 STAR

Axiom
annotated source: primary amide
annotated property: has_exact_synonym
annotated target: primary amide
database_cross_reference: IUPAC

Axiom
annotated source: primary amide
annotated property: has_exact_synonym
annotated target: primary amides
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

elemental molecular entity
type: Class
subclass of: molecular entity
definition: A molecular entity all atoms of which have the same atomic number.
has OBO namespace: chebi_ontology
has_related_synonym: homoatomic entity
has_related_synonym: homoatomic molecular entities
has_related_synonym: homoatomic molecular entity
id: CHEBI:33259
in_subset: 3 STAR

Axiom
annotated source: elemental molecular entity
annotated property: has_related_synonym
annotated target: homoatomic entity
database_cross_reference: ChEBI

Axiom
annotated source: elemental molecular entity
annotated property: has_related_synonym
annotated target: homoatomic molecular entities
database_cross_reference: ChEBI

Axiom
annotated source: elemental molecular entity
annotated property: has_related_synonym
annotated target: homoatomic molecular entity
database_cross_reference: ChEBI

elemental oxygen
type: Class
subclass of: inorganic molecular entity
subclass of: oxygen molecular entity
subclass of: elemental molecular entity
has OBO namespace: chebi_ontology
id: CHEBI:33262
in_subset: 3 STAR

diatomic oxygen
type: Class
subclass of: elemental oxygen
charge: 0
formula: O2
mass: 31.999
monoisotopicmass: 31.98983
has OBO namespace: chebi_ontology
id: CHEBI:33263
in_subset: 3 STAR

polyatomic anion
type: Class
subclass of: anion
subclass of: polyatomic ion
definition: An anion consisting of more than one atom.
has OBO namespace: chebi_ontology
has_related_synonym: polyatomic anions
id: CHEBI:33273
in_subset: 3 STAR

Axiom
annotated source: polyatomic anion
annotated property: has_related_synonym
annotated target: polyatomic anions
database_cross_reference: ChEBI

molecular messenger
type: Class
subclass of: biological role
has OBO namespace: chebi_ontology
has_related_synonym: chemical messenger
id: CHEBI:33280
in_subset: 3 STAR

Axiom
annotated source: molecular messenger
annotated property: has_related_synonym
annotated target: chemical messenger
database_cross_reference: ChEBI

nutrient
type: Class
subclass of: food component
definition: A nutrient is a food component that an organism uses to survive and grow.
has OBO namespace: chebi_ontology
has_related_synonym: nutrients
id: CHEBI:33284
in_subset: 3 STAR

Axiom
annotated source: nutrient
annotated property: has_related_synonym
annotated target: nutrients
database_cross_reference: ChEBI

heteroorganic entity
type: Class
subclass of: organic molecular entity
definition: A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms.
has OBO namespace: chebi_ontology
has_related_synonym: heteroorganic entities
has_related_synonym: organoelement compounds
id: CHEBI:33285
in_subset: 3 STAR

Axiom
annotated source: heteroorganic entity
annotated property: has_related_synonym
annotated target: heteroorganic entities
database_cross_reference: ChEBI

Axiom
annotated source: heteroorganic entity
annotated property: has_related_synonym
annotated target: organoelement compounds
database_cross_reference: ChEBI

agrochemical
type: Class
subclass of: application
definition: An agrochemical is a substance that is used in agriculture or horticulture.
database_cross_reference: Wikipedia:Agrochemical
has OBO namespace: chebi_ontology
has_related_synonym: agrichemical
has_related_synonym: agrichemicals
has_related_synonym: agricultural chemicals
has_related_synonym: agrochemicals
id: CHEBI:33286
in_subset: 3 STAR

Axiom
annotated source: agrochemical
annotated property: has_related_synonym
annotated target: agrichemical
database_cross_reference: ChEBI

Axiom
annotated source: agrochemical
annotated property: has_related_synonym
annotated target: agrichemicals
database_cross_reference: ChEBI

Axiom
annotated source: agrochemical
annotated property: has_related_synonym
annotated target: agricultural chemicals
database_cross_reference: ChEBI

Axiom
annotated source: agrochemical
annotated property: has_related_synonym
annotated target: agrochemicals
database_cross_reference: ChEBI

fertilizer
type: Class
subclass of: agrochemical
definition: A fertilizer is any substance that is added to soil or water to assist the growth of plants.
has OBO namespace: chebi_ontology
has_related_synonym: fertiliser
has_related_synonym: fertilizers
id: CHEBI:33287
in_subset: 3 STAR

Axiom
annotated source: fertilizer
annotated property: has_related_synonym
annotated target: fertiliser
database_cross_reference: ChEBI

Axiom
annotated source: fertilizer
annotated property: has_related_synonym
annotated target: fertilizers
database_cross_reference: ChEBI

food
type: Class
subclass of: physiological role
subclass of: Restriction
  on property: has part
  some values from: food component
definition: Any material that can be ingested by an organism.
has OBO namespace: chebi_ontology
has_related_synonym: food material
has_related_synonym: food materials
has_related_synonym: food role
has_related_synonym: foods
has_related_synonym: foodstuff
has_related_synonym: foodstuffs
id: CHEBI:33290
in_subset: 3 STAR

Axiom
annotated source: food
annotated property: has_related_synonym
annotated target: food material
database_cross_reference: ChEBI

Axiom
annotated source: food
annotated property: has_related_synonym
annotated target: food materials
database_cross_reference: ChEBI

Axiom
annotated source: food
annotated property: has_related_synonym
annotated target: food role
database_cross_reference: ChEBI

Axiom
annotated source: food
annotated property: has_related_synonym
annotated target: foods
database_cross_reference: ChEBI

Axiom
annotated source: food
annotated property: has_related_synonym
annotated target: foodstuff
database_cross_reference: ChEBI

Axiom
annotated source: food
annotated property: has_related_synonym
annotated target: foodstuffs
database_cross_reference: ChEBI

fuel
type: Class
subclass of: application
definition: An energy-rich substance that can be transformed with release of usable energy.
has OBO namespace: chebi_ontology
id: CHEBI:33292
in_subset: 3 STAR

alkaline earth molecular entity
type: Class
subclass of: s-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: alkaline earth metal atom
definition: An alkaline earth molecular entity is a molecular entity containing one or more atoms of an alkaline earth metal.
has_exact_synonym: alkaline earth molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: alkaline earth compounds
has_related_synonym: alkaline earth molecular entities
has_related_synonym: alkaline-earth compounds
id: CHEBI:33299
in_subset: 3 STAR

Axiom
annotated source: alkaline earth molecular entity
annotated property: has_exact_synonym
annotated target: alkaline earth molecular entity
database_cross_reference: ChEBI

Axiom
annotated source: alkaline earth molecular entity
annotated property: has_related_synonym
annotated target: alkaline earth compounds
database_cross_reference: ChEBI

Axiom
annotated source: alkaline earth molecular entity
annotated property: has_related_synonym
annotated target: alkaline earth molecular entities
database_cross_reference: ChEBI

Axiom
annotated source: alkaline earth molecular entity
annotated property: has_related_synonym
annotated target: alkaline-earth compounds
database_cross_reference: ChEBI

pnictogen
type: Class
subclass of: p-block element atom
definition: Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth.
has_exact_synonym: pnictogens
has OBO namespace: chebi_ontology
has_related_synonym: group 15 elements
has_related_synonym: group V elements
has_related_synonym: nitrogenoideos
has_related_synonym: nitrogenoides
has_related_synonym: pnictogene
has_related_synonym: pnictogenes
id: CHEBI:33300
in_subset: 3 STAR

Axiom
annotated source: pnictogen
annotated property: has_exact_synonym
annotated target: pnictogens
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: pnictogen
annotated property: has_related_synonym
annotated target: group 15 elements
database_cross_reference: ChEBI

Axiom
annotated source: pnictogen
annotated property: has_related_synonym
annotated target: group V elements
database_cross_reference: ChEBI

Axiom
annotated source: pnictogen
annotated property: has_related_synonym
annotated target: nitrogenoideos
database_cross_reference: ChEBI

Axiom
annotated source: pnictogen
annotated property: has_related_synonym
annotated target: nitrogenoides
database_cross_reference: ChEBI

Axiom
annotated source: pnictogen
annotated property: has_related_synonym
annotated target: pnictogene
database_cross_reference: ChEBI

Axiom
annotated source: pnictogen
annotated property: has_related_synonym
annotated target: pnictogenes
database_cross_reference: ChEBI

pnictogen molecular entity
type: Class
subclass of: p-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: pnictogen
definition: A p-block molecular entity containing any pnictogen.
has_exact_synonym: pnictogen molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: pnictogen molecular entities
id: CHEBI:33302
in_subset: 3 STAR

Axiom
annotated source: pnictogen molecular entity
annotated property: has_exact_synonym
annotated target: pnictogen molecular entity
database_cross_reference: ChEBI

Axiom
annotated source: pnictogen molecular entity
annotated property: has_related_synonym
annotated target: pnictogen molecular entities
database_cross_reference: ChEBI

chalcogen
type: Class
subclass of: p-block element atom
definition: Any p-block element belonging to the group 16 family of the periodic table.
database_cross_reference: PMID:17084588
has_exact_synonym: chalcogen
has_exact_synonym: chalcogens
has OBO namespace: chebi_ontology
has_related_synonym: Chalkogen
has_related_synonym: Chalkogene
has_related_synonym: anfigeno
has_related_synonym: anfigenos
has_related_synonym: calcogeno
has_related_synonym: calcogenos
has_related_synonym: chalcogene
has_related_synonym: chalcogenes
has_related_synonym: group 16 elements
has_related_synonym: group VI elements
id: CHEBI:33303
in_subset: 3 STAR

Axiom
annotated source: chalcogen
annotated property: database_cross_reference
annotated target: PMID:17084588
source: Europe PMC

Axiom
annotated source: chalcogen
annotated property: has_exact_synonym
annotated target: chalcogen
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: chalcogen
annotated property: has_exact_synonym
annotated target: chalcogens
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: Chalkogen
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: Chalkogene
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: anfigeno
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: anfigenos
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: calcogeno
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: calcogenos
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: chalcogene
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: chalcogenes
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: group 16 elements
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: group VI elements
database_cross_reference: ChEBI

chalcogen molecular entity
type: Class
subclass of: p-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: chalcogen
definition: Any p-block molecular entity containing a chalcogen.
has_exact_synonym: chalcogen molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: chalcogen compounds
has_related_synonym: chalcogen molecular entities
id: CHEBI:33304
in_subset: 3 STAR

Axiom
annotated source: chalcogen molecular entity
annotated property: has_exact_synonym
annotated target: chalcogen molecular entity
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen molecular entity
annotated property: has_related_synonym
annotated target: chalcogen compounds
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen molecular entity
annotated property: has_related_synonym
annotated target: chalcogen molecular entities
database_cross_reference: ChEBI

carbon group element atom
type: Class
subclass of: p-block element atom
has_exact_synonym: group 14 elements
has OBO namespace: chebi_ontology
has_related_synonym: carbon group element
has_related_synonym: carbon group elements
has_related_synonym: carbonoides
has_related_synonym: cristallogene
has_related_synonym: cristallogenes
has_related_synonym: group IV elements
id: CHEBI:33306
in_subset: 3 STAR

Axiom
annotated source: carbon group element atom
annotated property: has_exact_synonym
annotated target: group 14 elements
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbon group element atom
annotated property: has_related_synonym
annotated target: carbon group element
database_cross_reference: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: has_related_synonym
annotated target: carbon group elements
database_cross_reference: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: has_related_synonym
annotated target: carbonoides
database_cross_reference: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: has_related_synonym
annotated target: cristallogene
database_cross_reference: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: has_related_synonym
annotated target: cristallogenes
database_cross_reference: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: has_related_synonym
annotated target: group IV elements
database_cross_reference: ChEBI

carboxylic ester
type: Class
subclass of: ester
subclass of: carbonyl compound
definition: An ester of a carboxylic acid, R(1)C(=O)OR(2), where R(1) = H or organyl and R(2) = organyl.
charge: 0
formula: CO2R2
mass: 44.010
monoisotopicmass: 43.98983
smiles: [*]C(=O)O[*]
has alternative id: CHEBI:13204
has alternative id: CHEBI:23028
has alternative id: CHEBI:3408
database_cross_reference: KEGG:C02391
database_cross_reference: Wikipedia:Ester
has_exact_synonym: Carboxylic ester
has_exact_synonym: carboxylic esters
has OBO namespace: chebi_ontology
has_related_synonym: a carboxylic ester
has_related_synonym: carboxylic acid esters
id: CHEBI:33308
in_subset: 3 STAR

Axiom
annotated source: carboxylic ester
annotated property: has_exact_synonym
annotated target: Carboxylic ester
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: carboxylic ester
annotated property: has_exact_synonym
annotated target: carboxylic esters
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carboxylic ester
annotated property: has_related_synonym
annotated target: a carboxylic ester
database_cross_reference: UniProt

Axiom
annotated source: carboxylic ester
annotated property: has_related_synonym
annotated target: carboxylic acid esters
database_cross_reference: ChEBI

main group element atom
type: Class
subclass of: atom
definition: An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table.
has_exact_synonym: main group elements
has OBO namespace: chebi_ontology
has_related_synonym: Hauptgruppenelement
has_related_synonym: Hauptgruppenelemente
has_related_synonym: main group element
id: CHEBI:33318
in_subset: 3 STAR

Axiom
annotated source: main group element atom
annotated property: has_exact_synonym
annotated target: main group elements
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: main group element atom
annotated property: has_related_synonym
annotated target: Hauptgruppenelement
database_cross_reference: ChEBI

Axiom
annotated source: main group element atom
annotated property: has_related_synonym
annotated target: Hauptgruppenelemente
database_cross_reference: ChEBI

Axiom
annotated source: main group element atom
annotated property: has_related_synonym
annotated target: main group element
database_cross_reference: ChEBI

sulfur oxoacid
type: Class
subclass of: sulfur molecular entity
subclass of: chalcogen oxoacid
has OBO namespace: chebi_ontology
has_related_synonym: oxoacids of sulfur
has_related_synonym: sulfur oxoacids
id: CHEBI:33402
in_subset: 3 STAR

Axiom
annotated source: sulfur oxoacid
annotated property: has_related_synonym
annotated target: oxoacids of sulfur
database_cross_reference: ChEBI

Axiom
annotated source: sulfur oxoacid
annotated property: has_related_synonym
annotated target: sulfur oxoacids
database_cross_reference: ChEBI

pnictogen oxoacid
type: Class
subclass of: oxoacid
subclass of: pnictogen molecular entity
subclass of: Restriction
  on property: has role
  some values from: inorganic acid
has OBO namespace: chebi_ontology
has_related_synonym: pnictogen oxoacids
id: CHEBI:33408
in_subset: 3 STAR

Axiom
annotated source: pnictogen oxoacid
annotated property: has_related_synonym
annotated target: pnictogen oxoacids
database_cross_reference: ChEBI

sulfur oxoacid derivative
type: Class
subclass of: sulfur molecular entity
subclass of: oxoacid derivative
has_exact_synonym: sulfur oxoacid derivative
has OBO namespace: chebi_ontology
has_related_synonym: sulfur oxoacid derivatives
id: CHEBI:33424
in_subset: 3 STAR

Axiom
annotated source: sulfur oxoacid derivative
annotated property: has_exact_synonym
annotated target: sulfur oxoacid derivative
database_cross_reference: ChEBI

Axiom
annotated source: sulfur oxoacid derivative
annotated property: has_related_synonym
annotated target: sulfur oxoacid derivatives
database_cross_reference: ChEBI

nitrogen oxoacid
type: Class
subclass of: pnictogen oxoacid
subclass of: nitrogen molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: nitrogen oxoacids
has_related_synonym: oxoacids of nitrogen
id: CHEBI:33455
in_subset: 3 STAR

Axiom
annotated source: nitrogen oxoacid
annotated property: has_related_synonym
annotated target: nitrogen oxoacids
database_cross_reference: ChEBI

Axiom
annotated source: nitrogen oxoacid
annotated property: has_related_synonym
annotated target: oxoacids of nitrogen
database_cross_reference: ChEBI

phosphorus oxoacid
type: Class
subclass of: pnictogen oxoacid
subclass of: phosphorus oxoacids and derivatives
definition: A pnictogen oxoacid which contains phosphorus and oxygen, at least one hydrogen atom bound to oxygen, and forms an ion by the loss of one or more protons.
has_exact_synonym: phosphorus oxoacid
has OBO namespace: chebi_ontology
has_related_synonym: Oxosaeure des Phosphors
has_related_synonym: oxoacids of phosphorus
has_related_synonym: phosphorus oxoacids
id: CHEBI:33457
in_subset: 3 STAR

Axiom
annotated source: phosphorus oxoacid
annotated property: has_exact_synonym
annotated target: phosphorus oxoacid
database_cross_reference: ChEBI

Axiom
annotated source: phosphorus oxoacid
annotated property: has_related_synonym
annotated target: Oxosaeure des Phosphors
database_cross_reference: ChEBI

Axiom
annotated source: phosphorus oxoacid
annotated property: has_related_synonym
annotated target: oxoacids of phosphorus
database_cross_reference: ChEBI

Axiom
annotated source: phosphorus oxoacid
annotated property: has_related_synonym
annotated target: phosphorus oxoacids
database_cross_reference: ChEBI

nitrogen oxoanion
type: Class
subclass of: pnictogen oxoanion
subclass of: nitrogen molecular entity
has_exact_synonym: nitrogen oxoanion
has OBO namespace: chebi_ontology
has_related_synonym: nitrogen oxoanions
has_related_synonym: oxoanions of nitrogen
id: CHEBI:33458
in_subset: 3 STAR

Axiom
annotated source: nitrogen oxoanion
annotated property: has_exact_synonym
annotated target: nitrogen oxoanion
database_cross_reference: ChEBI

Axiom
annotated source: nitrogen oxoanion
annotated property: has_related_synonym
annotated target: nitrogen oxoanions
database_cross_reference: ChEBI

Axiom
annotated source: nitrogen oxoanion
annotated property: has_related_synonym
annotated target: oxoanions of nitrogen
database_cross_reference: ChEBI

pnictogen oxoanion
type: Class
subclass of: pnictogen molecular entity
subclass of: oxoanion
has_exact_synonym: pnictogen oxoanion
has OBO namespace: chebi_ontology
has_related_synonym: pnictogen oxoanions
id: CHEBI:33459
in_subset: 3 STAR

Axiom
annotated source: pnictogen oxoanion
annotated property: has_exact_synonym
annotated target: pnictogen oxoanion
database_cross_reference: ChEBI

Axiom
annotated source: pnictogen oxoanion
annotated property: has_related_synonym
annotated target: pnictogen oxoanions
database_cross_reference: ChEBI

phosphorus oxoanion
type: Class
subclass of: inorganic anion
subclass of: phosphorus molecular entity
subclass of: pnictogen oxoanion
has_exact_synonym: phosphorus oxoanion
has OBO namespace: chebi_ontology
has_related_synonym: oxoanions of phosphorus
has_related_synonym: phosphorus oxoanions
id: CHEBI:33461
in_subset: 3 STAR

Axiom
annotated source: phosphorus oxoanion
annotated property: has_exact_synonym
annotated target: phosphorus oxoanion
database_cross_reference: ChEBI

Axiom
annotated source: phosphorus oxoanion
annotated property: has_related_synonym
annotated target: oxoanions of phosphorus
database_cross_reference: ChEBI

Axiom
annotated source: phosphorus oxoanion
annotated property: has_related_synonym
annotated target: phosphorus oxoanions
database_cross_reference: ChEBI

sulfur oxoanion
type: Class
subclass of: sulfur molecular entity
subclass of: chalcogen oxoanion
has_exact_synonym: sulfur oxoanion
has OBO namespace: chebi_ontology
has_related_synonym: oxoanions of sulfur
has_related_synonym: sulfur oxoanions
id: CHEBI:33482
in_subset: 3 STAR

Axiom
annotated source: sulfur oxoanion
annotated property: has_exact_synonym
annotated target: sulfur oxoanion
database_cross_reference: ChEBI

Axiom
annotated source: sulfur oxoanion
annotated property: has_related_synonym
annotated target: oxoanions of sulfur
database_cross_reference: ChEBI

Axiom
annotated source: sulfur oxoanion
annotated property: has_related_synonym
annotated target: sulfur oxoanions
database_cross_reference: ChEBI

chalcogen oxoacid
type: Class
subclass of: oxoacid
subclass of: Restriction
  on property: has role
  some values from: inorganic acid
has_exact_synonym: chalcogen oxoacid
has OBO namespace: chebi_ontology
has_related_synonym: chalcogen oxoacids
id: CHEBI:33484
in_subset: 3 STAR

Axiom
annotated source: chalcogen oxoacid
annotated property: has_exact_synonym
annotated target: chalcogen oxoacid
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen oxoacid
annotated property: has_related_synonym
annotated target: chalcogen oxoacids
database_cross_reference: ChEBI

chalcogen oxoanion
type: Class
subclass of: oxoanion
has_exact_synonym: chalcogen oxoanion
has OBO namespace: chebi_ontology
has_related_synonym: chalcogen oxoanions
id: CHEBI:33485
in_subset: 3 STAR

Axiom
annotated source: chalcogen oxoanion
annotated property: has_exact_synonym
annotated target: chalcogen oxoanion
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen oxoanion
annotated property: has_related_synonym
annotated target: chalcogen oxoanions
database_cross_reference: ChEBI

metal atom
type: Class
subclass of: atom
definition: An atom of an element that exhibits typical metallic properties, being typically shiny, with high electrical and thermal conductivity.
has alternative id: CHEBI:25217
has alternative id: CHEBI:6788
database_cross_reference: KEGG:C00050
database_cross_reference: PMID:21784043
database_cross_reference: Wikipedia:Metal
has OBO namespace: chebi_ontology
has_related_synonym: elemental metal
has_related_synonym: elemental metals
has_related_synonym: metal element
has_related_synonym: metal elements
has_related_synonym: metals
id: CHEBI:33521
in_subset: 3 STAR

Axiom
annotated source: metal atom
annotated property: database_cross_reference
annotated target: PMID:21784043
source: Europe PMC

Axiom
annotated source: metal atom
annotated property: has_related_synonym
annotated target: elemental metal
database_cross_reference: ChEBI

Axiom
annotated source: metal atom
annotated property: has_related_synonym
annotated target: elemental metals
database_cross_reference: ChEBI

Axiom
annotated source: metal atom
annotated property: has_related_synonym
annotated target: metal element
database_cross_reference: ChEBI

Axiom
annotated source: metal atom
annotated property: has_related_synonym
annotated target: metal elements
database_cross_reference: ChEBI

Axiom
annotated source: metal atom
annotated property: has_related_synonym
annotated target: metals
database_cross_reference: ChEBI

alpha-amino-acid anion
type: Class
subclass of: amino-acid anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: alpha-amino acid
definition: An amino-acid anion obtained by deprotonation of any alpha-amino acid.
has_exact_synonym: alpha-amino-acid anion
has OBO namespace: chebi_ontology
has_related_synonym: alpha-amino acid anions
has_related_synonym: alpha-amino-acid anions
id: CHEBI:33558
in_subset: 3 STAR

Axiom
annotated source: alpha-amino-acid anion
annotated property: has_exact_synonym
annotated target: alpha-amino-acid anion
database_cross_reference: ChEBI

Axiom
annotated source: alpha-amino-acid anion
annotated property: has_related_synonym
annotated target: alpha-amino acid anions
database_cross_reference: ChEBI

Axiom
annotated source: alpha-amino-acid anion
annotated property: has_related_synonym
annotated target: alpha-amino-acid anions
database_cross_reference: ChEBI

s-block element atom
type: Class
subclass of: atom
has OBO namespace: chebi_ontology
has_related_synonym: s-block element
has_related_synonym: s-block elements
id: CHEBI:33559
in_subset: 3 STAR

Axiom
annotated source: s-block element atom
annotated property: has_related_synonym
annotated target: s-block element
database_cross_reference: ChEBI

Axiom
annotated source: s-block element atom
annotated property: has_related_synonym
annotated target: s-block elements
database_cross_reference: ChEBI

p-block element atom
type: Class
subclass of: main group element atom
definition: Any main group element atom belonging to the p-block of the periodic table.
has OBO namespace: chebi_ontology
has_related_synonym: p-block element
has_related_synonym: p-block elements
id: CHEBI:33560
in_subset: 3 STAR

Axiom
annotated source: p-block element atom
annotated property: has_related_synonym
annotated target: p-block element
database_cross_reference: ChEBI

Axiom
annotated source: p-block element atom
annotated property: has_related_synonym
annotated target: p-block elements
database_cross_reference: ChEBI

catechols
type: Class
subclass of: benzenediols
definition: Any compound containing an o-diphenol component.
charge: 0
formula: C6H2O2R4
mass: 106.079
monoisotopicmass: 106.00548
smiles: OC1=C(O)C(*)=C(*)C(*)=C1*
has alternative id: CHEBI:134187
has alternative id: CHEBI:13628
has alternative id: CHEBI:18862
database_cross_reference: KEGG:C15571
has OBO namespace: chebi_ontology
has_related_synonym: 1,2-benzenediols
has_related_synonym: a catechol
has_related_synonym: benzene-1,2-diols
id: CHEBI:33566
in_subset: 3 STAR

Axiom
annotated source: catechols
annotated property: has_related_synonym
annotated target: 1,2-benzenediols
database_cross_reference: ChEBI

Axiom
annotated source: catechols
annotated property: has_related_synonym
annotated target: a catechol
database_cross_reference: UniProt

Axiom
annotated source: catechols
annotated property: has_related_synonym
annotated target: benzene-1,2-diols
database_cross_reference: ChEBI

catecholamine
type: Class
subclass of: monoamine molecular messenger
subclass of: catechols
definition: 4-(2-Aminoethyl)pyrocatechol [4-(2-aminoethyl)benzene-1,2-diol] and derivatives formed by substitution.
charge: 0
formula: C8H9NO2R2
mass: 151.163
monoisotopicmass: 151.06333
has alternative id: CHEBI:23056
has alternative id: CHEBI:3468
database_cross_reference: KEGG:C02012
has_exact_synonym: Catecholamine
has_exact_synonym: catecholamines
has OBO namespace: chebi_ontology
has_related_synonym: catecholamines
id: CHEBI:33567
in_subset: 3 STAR

Axiom
annotated source: catecholamine
annotated property: has_exact_synonym
annotated target: Catecholamine
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: catecholamine
annotated property: has_exact_synonym
annotated target: catecholamines
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: catecholamine
annotated property: has_related_synonym
annotated target: catecholamines
database_cross_reference: ChEBI

noradrenaline
type: Class
subclass of: catecholamine
subclass of: Restriction
  on property: has role
  some values from: human xenobiotic metabolite
subclass of: Restriction
  on property: is conjugate base of
  some values from: noradrenaline(1+)
definition: A catecholamine in which C-1 of the aminoethyl side-chain is hydroxy-substituted.
charge: 0
formula: C8H11NO3
inchi: InChI=1S/C8H11NO3/c9-4-8(12)5-1-2-6(10)7(11)3-5/h1-3,8,10-12H,4,9H2
inchikey: SFLSHLFXELFNJZ-UHFFFAOYSA-N
mass: 169.17788
monoisotopicmass: 169.07389
smiles: NCC(O)c1ccc(O)c(O)c1
database_cross_reference: Beilstein:2210994
database_cross_reference: CAS:138-65-8
database_cross_reference: Gmelin:863925
database_cross_reference: LINCS:LSM-5181
has_exact_synonym: 4-(2-amino-1-hydroxyethyl)benzene-1,2-diol
has OBO namespace: chebi_ontology
has_related_synonym: noradrenalina
has_related_synonym: norepinephrine
id: CHEBI:33569
in_subset: 3 STAR

Axiom
annotated source: noradrenaline
annotated property: database_cross_reference
annotated target: Beilstein:2210994
source: Beilstein

Axiom
annotated source: noradrenaline
annotated property: database_cross_reference
annotated target: CAS:138-65-8
source: ChemIDplus

Axiom
annotated source: noradrenaline
annotated property: database_cross_reference
annotated target: CAS:138-65-8
source: NIST Chemistry WebBook

Axiom
annotated source: noradrenaline
annotated property: database_cross_reference
annotated target: Gmelin:863925
source: Gmelin

Axiom
annotated source: noradrenaline
annotated property: has_exact_synonym
annotated target: 4-(2-amino-1-hydroxyethyl)benzene-1,2-diol
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: noradrenaline
annotated property: has_related_synonym
annotated target: noradrenalina
database_cross_reference: ChEBI

Axiom
annotated source: noradrenaline
annotated property: has_related_synonym
annotated target: norepinephrine
database_cross_reference: ChEBI

benzenediols
type: Class
subclass of: phenols
has alternative id: CHEBI:22705
has alternative id: CHEBI:22711
has OBO namespace: chebi_ontology
id: CHEBI:33570
in_subset: 3 STAR

carboxylic acid
type: Class
subclass of: carbon oxoacid
subclass of: carbonyl compound
subclass of: organic acid
subclass of: Restriction
  on property: has part
  some values from: carboxy group
subclass of: Restriction
  on property: is conjugate acid of
  some values from: carboxylic acid anion
definition: A carbon oxoacid acid carrying at least one -C(=O)OH group and having the structure RC(=O)OH, where R is any any monovalent functional group. Carboxylic acids are the most common type of organic acid.
charge: 0
formula: CHO2R
mass: 45.01740
monoisotopicmass: 44.99765
smiles: OC([*])=O
has alternative id: CHEBI:13428
has alternative id: CHEBI:13627
has alternative id: CHEBI:23027
database_cross_reference: PMID:17147560
database_cross_reference: PMID:18433345
database_cross_reference: Wikipedia:Carboxylic_acid
has_exact_synonym: carboxylic acid
has_exact_synonym: carboxylic acids
has OBO namespace: chebi_ontology
has_related_synonym: Carbonsaeure
has_related_synonym: Carbonsaeuren
has_related_synonym: Karbonsaeure
has_related_synonym: RC(=O)OH
has_related_synonym: acide carboxylique
has_related_synonym: acides carboxyliques
has_related_synonym: acido carboxilico
has_related_synonym: acidos carboxilicos
id: CHEBI:33575
in_subset: 3 STAR

Axiom
annotated source: carboxylic acid
annotated property: database_cross_reference
annotated target: PMID:17147560
source: Europe PMC

Axiom
annotated source: carboxylic acid
annotated property: database_cross_reference
annotated target: PMID:18433345
source: Europe PMC

Axiom
annotated source: carboxylic acid
annotated property: has_exact_synonym
annotated target: carboxylic acid
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carboxylic acid
annotated property: has_exact_synonym
annotated target: carboxylic acids
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: Carbonsaeure
database_cross_reference: ChEBI

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: Carbonsaeuren
database_cross_reference: ChEBI

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: Karbonsaeure
database_cross_reference: ChEBI

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: RC(=O)OH
database_cross_reference: IUPAC

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: acide carboxylique
database_cross_reference: IUPAC

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: acides carboxyliques
database_cross_reference: IUPAC

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: acido carboxilico
database_cross_reference: IUPAC

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: acidos carboxilicos
database_cross_reference: IUPAC

main group molecular entity
type: Class
subclass of: molecular entity
subclass of: Restriction
  on property: has part
  some values from: main group element atom
definition: A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table.
has OBO namespace: chebi_ontology
has_related_synonym: main group compounds
has_related_synonym: main group molecular entities
id: CHEBI:33579
in_subset: 3 STAR

Axiom
annotated source: main group molecular entity
annotated property: has_related_synonym
annotated target: main group compounds
database_cross_reference: ChEBI

Axiom
annotated source: main group molecular entity
annotated property: has_related_synonym
annotated target: main group molecular entities
database_cross_reference: ChEBI

carbon group molecular entity
type: Class
subclass of: p-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: carbon group element atom
has_exact_synonym: carbon group molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: carbon group molecular entities
id: CHEBI:33582
in_subset: 3 STAR

Axiom
annotated source: carbon group molecular entity
annotated property: has_exact_synonym
annotated target: carbon group molecular entity
database_cross_reference: ChEBI

Axiom
annotated source: carbon group molecular entity
annotated property: has_related_synonym
annotated target: carbon group molecular entities
database_cross_reference: ChEBI

cyclic compound
type: Class
subclass of: molecule
definition: Any molecule that consists of a series of atoms joined together to form a ring.
database_cross_reference: Wikipedia:Cyclic_compound
has OBO namespace: chebi_ontology
has_related_synonym: cyclic compounds
id: CHEBI:33595
in_subset: 3 STAR

Axiom
annotated source: cyclic compound
annotated property: has_related_synonym
annotated target: cyclic compounds
database_cross_reference: ChEBI

hydrogen molecular entity
type: Class
subclass of: s-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: hydrogen atom
has OBO namespace: chebi_ontology
has_related_synonym: hydrogen compounds
has_related_synonym: hydrogen molecular entities
id: CHEBI:33608
in_subset: 3 STAR

Axiom
annotated source: hydrogen molecular entity
annotated property: has_related_synonym
annotated target: hydrogen compounds
database_cross_reference: ChEBI

Axiom
annotated source: hydrogen molecular entity
annotated property: has_related_synonym
annotated target: hydrogen molecular entities
database_cross_reference: ChEBI

polycyclic compound
type: Class
subclass of: cyclic compound
has OBO namespace: chebi_ontology
has_related_synonym: polycyclic compounds
id: CHEBI:33635
in_subset: 3 STAR

Axiom
annotated source: polycyclic compound
annotated property: has_related_synonym
annotated target: polycyclic compounds
database_cross_reference: ChEBI

bicyclic compound
type: Class
subclass of: cyclic compound
definition: A molecule that features two fused rings.
has OBO namespace: chebi_ontology
has_related_synonym: bicyclic compounds
id: CHEBI:33636
in_subset: 3 STAR

Axiom
annotated source: bicyclic compound
annotated property: has_related_synonym
annotated target: bicyclic compounds
database_cross_reference: ChEBI

aliphatic compound
type: Class
subclass of: organic molecular entity
definition: Any acyclic or cyclic, saturated or unsaturated carbon compound, excluding aromatic compounds.
has_exact_synonym: aliphatic compounds
has OBO namespace: chebi_ontology
id: CHEBI:33653
in_subset: 3 STAR

Axiom
annotated source: aliphatic compound
annotated property: has_exact_synonym
annotated target: aliphatic compounds
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

aromatic compound
type: Class
subclass of: cyclic compound
definition: A cyclically conjugated molecular entity with a stability (due to delocalization) significantly greater than that of a hypothetical localized structure (e.g. Kekule structure) is said to possess aromatic character.
has_exact_synonym: aromatic compounds
has_exact_synonym: aromatic molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: aromatics
has_related_synonym: aromatische Verbindungen
id: CHEBI:33655
in_subset: 3 STAR

Axiom
annotated source: aromatic compound
annotated property: has_exact_synonym
annotated target: aromatic compounds
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: aromatic compound
annotated property: has_exact_synonym
annotated target: aromatic molecular entity
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: aromatic compound
annotated property: has_related_synonym
annotated target: aromatics
database_cross_reference: ChEBI

Axiom
annotated source: aromatic compound
annotated property: has_related_synonym
annotated target: aromatische Verbindungen
database_cross_reference: ChEBI

organic aromatic compound
type: Class
subclass of: aromatic compound
subclass of: organic cyclic compound
has OBO namespace: chebi_ontology
has_related_synonym: organic aromatic compounds
id: CHEBI:33659
in_subset: 3 STAR

Axiom
annotated source: organic aromatic compound
annotated property: has_related_synonym
annotated target: organic aromatic compounds
database_cross_reference: ChEBI

heteropolycyclic compound
type: Class
subclass of: polycyclic compound
subclass of: heterocyclic compound
definition: A polycyclic compound in which at least one of the rings contains at least one non-carbon atom.
has_exact_synonym: heteropolycyclic compounds
has OBO namespace: chebi_ontology
has_related_synonym: polyheterocyclic compounds
id: CHEBI:33671
in_subset: 3 STAR

Axiom
annotated source: heteropolycyclic compound
annotated property: has_exact_synonym
annotated target: heteropolycyclic compounds
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: heteropolycyclic compound
annotated property: has_related_synonym
annotated target: polyheterocyclic compounds
database_cross_reference: ChEBI

heterobicyclic compound
type: Class
subclass of: bicyclic compound
subclass of: heterocyclic compound
definition: A bicyclic compound in which at least one of the rings contains at least one skeletal heteroatom.
has_exact_synonym: heterobicyclic compounds
has OBO namespace: chebi_ontology
id: CHEBI:33672
in_subset: 3 STAR

Axiom
annotated source: heterobicyclic compound
annotated property: has_exact_synonym
annotated target: heterobicyclic compounds
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

s-block molecular entity
type: Class
subclass of: main group molecular entity
subclass of: Restriction
  on property: has part
  some values from: s-block element atom
definition: An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element.
has_exact_synonym: s-block molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: s-block compounds
has_related_synonym: s-block molecular entities
id: CHEBI:33674
in_subset: 3 STAR

Axiom
annotated source: s-block molecular entity
annotated property: has_exact_synonym
annotated target: s-block molecular entity
database_cross_reference: ChEBI

Axiom
annotated source: s-block molecular entity
annotated property: has_related_synonym
annotated target: s-block compounds
database_cross_reference: ChEBI

Axiom
annotated source: s-block molecular entity
annotated property: has_related_synonym
annotated target: s-block molecular entities
database_cross_reference: ChEBI

p-block molecular entity
type: Class
subclass of: main group molecular entity
subclass of: Restriction
  on property: has part
  some values from: p-block element atom
definition: A main group molecular entity that contains one or more atoms of a p-block element.
has OBO namespace: chebi_ontology
has_related_synonym: p-block compounds
has_related_synonym: p-block molecular entities
has_related_synonym: p-block molecular entitiy
id: CHEBI:33675
in_subset: 3 STAR

Axiom
annotated source: p-block molecular entity
annotated property: has_related_synonym
annotated target: p-block compounds
database_cross_reference: ChEBI

Axiom
annotated source: p-block molecular entity
annotated property: has_related_synonym
annotated target: p-block molecular entities
database_cross_reference: ChEBI

Axiom
annotated source: p-block molecular entity
annotated property: has_related_synonym
annotated target: p-block molecular entitiy
database_cross_reference: ChEBI

hydrides
type: Class
subclass of: hydrogen molecular entity
subclass of: heteroatomic molecular entity
definition: Hydrides are chemical compounds of hydrogen with other chemical elements.
has OBO namespace: chebi_ontology
id: CHEBI:33692
in_subset: 3 STAR

oxygen hydride
type: Class
subclass of: chalcogen hydride
has_exact_synonym: oxygen hydride
has OBO namespace: chebi_ontology
has_related_synonym: hydrides of oxygen
has_related_synonym: oxygen hydrides
id: CHEBI:33693
in_subset: 3 STAR

Axiom
annotated source: oxygen hydride
annotated property: has_exact_synonym
annotated target: oxygen hydride
database_cross_reference: ChEBI

Axiom
annotated source: oxygen hydride
annotated property: has_related_synonym
annotated target: hydrides of oxygen
database_cross_reference: ChEBI

Axiom
annotated source: oxygen hydride
annotated property: has_related_synonym
annotated target: oxygen hydrides
database_cross_reference: ChEBI

biomacromolecule
type: Class
subclass of: macromolecule
subclass of: organic molecular entity
definition: A macromolecule formed by a living organism.
has_exact_synonym: biopolymer
has OBO namespace: chebi_ontology
has_related_synonym: Biopolymere
has_related_synonym: biomacromolecules
has_related_synonym: biopolymers
id: CHEBI:33694
in_subset: 3 STAR

Axiom
annotated source: biomacromolecule
annotated property: has_exact_synonym
annotated target: biopolymer
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: biomacromolecule
annotated property: has_related_synonym
annotated target: Biopolymere
database_cross_reference: ChEBI

Axiom
annotated source: biomacromolecule
annotated property: has_related_synonym
annotated target: biomacromolecules
database_cross_reference: ChEBI

Axiom
annotated source: biomacromolecule
annotated property: has_related_synonym
annotated target: biopolymers
database_cross_reference: ChEBI

information biomacromolecule
type: Class
subclass of: biomacromolecule
has OBO namespace: chebi_ontology
has_related_synonym: genetically encoded biomacromolecules
has_related_synonym: genetically encoded biopolymers
has_related_synonym: information biomacromolecules
has_related_synonym: information biopolymers
has_related_synonym: information macromolecule
has_related_synonym: information macromolecules
id: CHEBI:33695
in_subset: 3 STAR

Axiom
annotated source: information biomacromolecule
annotated property: has_related_synonym
annotated target: genetically encoded biomacromolecules
database_cross_reference: ChEBI

Axiom
annotated source: information biomacromolecule
annotated property: has_related_synonym
annotated target: genetically encoded biopolymers
database_cross_reference: ChEBI

Axiom
annotated source: information biomacromolecule
annotated property: has_related_synonym
annotated target: information biomacromolecules
database_cross_reference: ChEBI

Axiom
annotated source: information biomacromolecule
annotated property: has_related_synonym
annotated target: information biopolymers
database_cross_reference: ChEBI

Axiom
annotated source: information biomacromolecule
annotated property: has_related_synonym
annotated target: information macromolecule
database_cross_reference: ChEBI

Axiom
annotated source: information biomacromolecule
annotated property: has_related_synonym
annotated target: information macromolecules
database_cross_reference: ChEBI

nucleic acid
type: Class
subclass of: polynucleotide
subclass of: Restriction
  on property: has part
  some values from: canonical nucleoside residue
subclass of: Restriction
  on property: has part
  some values from: canonical nucleotide residue
definition: A macromolecule made up of nucleotide units and hydrolysable into certain pyrimidine or purine bases (usually adenine, cytosine, guanine, thymine, uracil), D-ribose or 2-deoxy-D-ribose and phosphoric acid.
has_exact_synonym: nucleic acids
has OBO namespace: chebi_ontology
has_related_synonym: NA
has_related_synonym: Nukleinsaeure
has_related_synonym: Nukleinsaeuren
has_related_synonym: acide nucleique
has_related_synonym: acides nucleiques
has_related_synonym: acido nucleico
has_related_synonym: acidos nucleicos
id: CHEBI:33696
in_subset: 3 STAR

Axiom
annotated source: nucleic acid
annotated property: has_exact_synonym
annotated target: nucleic acids
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nucleic acid
annotated property: has_related_synonym
annotated target: NA
database_cross_reference: ChEBI

Axiom
annotated source: nucleic acid
annotated property: has_related_synonym
annotated target: Nukleinsaeure
database_cross_reference: ChEBI

Axiom
annotated source: nucleic acid
annotated property: has_related_synonym
annotated target: Nukleinsaeuren
database_cross_reference: ChEBI

Axiom
annotated source: nucleic acid
annotated property: has_related_synonym
annotated target: acide nucleique
database_cross_reference: ChEBI

Axiom
annotated source: nucleic acid
annotated property: has_related_synonym
annotated target: acides nucleiques
database_cross_reference: ChEBI

Axiom
annotated source: nucleic acid
annotated property: has_related_synonym
annotated target: acido nucleico
database_cross_reference: ChEBI

Axiom
annotated source: nucleic acid
annotated property: has_related_synonym
annotated target: acidos nucleicos
database_cross_reference: ChEBI

ribonucleic acid
type: Class
subclass of: nucleic acid
subclass of: Restriction
  on property: has part
  some values from: canonical ribonucleoside residue
subclass of: Restriction
  on property: has part
  some values from: canonical ribonucleotide residue
definition: High molecular weight, linear polymers, composed of nucleotides containing ribose and linked by phosphodiester bonds; RNA is central to the synthesis of proteins.
database_cross_reference: CAS:63231-63-0
has_exact_synonym: ribonucleic acid
has_exact_synonym: ribonucleic acids
has OBO namespace: chebi_ontology
has_related_synonym: RNA
has_related_synonym: RNS
has_related_synonym: Ribonukleinsaeure
has_related_synonym: pentosenucleic acids
has_related_synonym: ribonucleic acids
has_related_synonym: ribose nucleic acid
has_related_synonym: yeast nucleic acid
id: CHEBI:33697
in_subset: 3 STAR

Axiom
annotated source: ribonucleic acid
annotated property: database_cross_reference
annotated target: CAS:63231-63-0
source: ChemIDplus

Axiom
annotated source: ribonucleic acid
annotated property: has_exact_synonym
annotated target: ribonucleic acid
database_cross_reference: IUPAC

Axiom
annotated source: ribonucleic acid
annotated property: has_exact_synonym
annotated target: ribonucleic acids
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ribonucleic acid
annotated property: has_related_synonym
annotated target: RNA
database_cross_reference: IUPAC

Axiom
annotated source: ribonucleic acid
annotated property: has_related_synonym
annotated target: RNS
database_cross_reference: ChEBI

Axiom
annotated source: ribonucleic acid
annotated property: has_related_synonym
annotated target: Ribonukleinsaeure
database_cross_reference: ChEBI

Axiom
annotated source: ribonucleic acid
annotated property: has_related_synonym
annotated target: pentosenucleic acids
database_cross_reference: ChemIDplus

Axiom
annotated source: ribonucleic acid
annotated property: has_related_synonym
annotated target: ribonucleic acids
database_cross_reference: ChEBI

Axiom
annotated source: ribonucleic acid
annotated property: has_related_synonym
annotated target: ribose nucleic acid
database_cross_reference: ChEBI

Axiom
annotated source: ribonucleic acid
annotated property: has_related_synonym
annotated target: yeast nucleic acid
database_cross_reference: ChEBI

proteinogenic amino-acid residue
type: Class
subclass of: alpha-amino-acid residue
has OBO namespace: chebi_ontology
has_related_synonym: canonical amino-acid residue
has_related_synonym: canonical amino-acid residues
has_related_synonym: common amino acid residues
has_related_synonym: proteinogenic amino-acid residues
has_related_synonym: standard amino acid residues
has_related_synonym: standard amino-acid residues
id: CHEBI:33700
in_subset: 3 STAR

Axiom
annotated source: proteinogenic amino-acid residue
annotated property: has_related_synonym
annotated target: canonical amino-acid residue
database_cross_reference: ChEBI

Axiom
annotated source: proteinogenic amino-acid residue
annotated property: has_related_synonym
annotated target: canonical amino-acid residues
database_cross_reference: ChEBI

Axiom
annotated source: proteinogenic amino-acid residue
annotated property: has_related_synonym
annotated target: common amino acid residues
database_cross_reference: ChEBI

Axiom
annotated source: proteinogenic amino-acid residue
annotated property: has_related_synonym
annotated target: proteinogenic amino-acid residues
database_cross_reference: ChEBI

Axiom
annotated source: proteinogenic amino-acid residue
annotated property: has_related_synonym
annotated target: standard amino acid residues
database_cross_reference: ChEBI

Axiom
annotated source: proteinogenic amino-acid residue
annotated property: has_related_synonym
annotated target: standard amino-acid residues
database_cross_reference: ChEBI

polyatomic cation
type: Class
subclass of: polyatomic ion
subclass of: cation
definition: A cation consisting of more than one atom.
has OBO namespace: chebi_ontology
has_related_synonym: polyatomic cations
id: CHEBI:33702
in_subset: 3 STAR

Axiom
annotated source: polyatomic cation
annotated property: has_related_synonym
annotated target: polyatomic cations
database_cross_reference: ChEBI

alpha-amino acid
type: Class
subclass of: amino acid
subclass of: Restriction
  on property: is conjugate acid of
  some values from: alpha-amino-acid anion
subclass of: Restriction
  on property: is tautomer of
  some values from: alpha-amino acid zwitterion
definition: An amino acid in which the amino group is located on the carbon atom at the position alpha to the carboxy group.
charge: 0
formula: C2H4NO2R
mass: 74.05870
monoisotopicmass: 74.02420
smiles: NC([*])C(O)=O
has alternative id: CHEBI:10208
has alternative id: CHEBI:13779
has alternative id: CHEBI:22442
has alternative id: CHEBI:2642
database_cross_reference: KEGG:C00045
database_cross_reference: KEGG:C05167
has_exact_synonym: alpha-amino acid
has OBO namespace: chebi_ontology
has_related_synonym: Amino acid
has_related_synonym: Amino acids
has_related_synonym: alpha-amino acids
has_related_synonym: alpha-amino carboxylic acids
id: CHEBI:33704
in_subset: 3 STAR

Axiom
annotated source: alpha-amino acid
annotated property: has_exact_synonym
annotated target: alpha-amino acid
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: alpha-amino acid
annotated property: has_related_synonym
annotated target: Amino acid
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: alpha-amino acid
annotated property: has_related_synonym
annotated target: Amino acids
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: alpha-amino acid
annotated property: has_related_synonym
annotated target: alpha-amino acids
database_cross_reference: ChEBI

Axiom
annotated source: alpha-amino acid
annotated property: has_related_synonym
annotated target: alpha-amino acids
database_cross_reference: JCBN

Axiom
annotated source: alpha-amino acid
annotated property: has_related_synonym
annotated target: alpha-amino carboxylic acids
database_cross_reference: IUPAC

amino-acid residue
type: Class
subclass of: organic group
subclass of: Restriction
  on property: is substituent group from
  some values from: amino acid
definition: When two or more amino acids combine to form a peptide, the elements of water are removed, and what remains of each amino acid is called an amino-acid residue.
has_exact_synonym: amino acid residue
has_exact_synonym: amino-acid residue
has_narrow_synonym: protein residue
has OBO namespace: chebi_ontology
has_related_synonym: amino acid residue
has_related_synonym: amino-acid residues
id: CHEBI:33708
in_subset: 3 STAR

Axiom
annotated source: amino-acid residue
annotated property: definition
annotated target: When two or more amino acids combine to form a peptide, the elements of water are removed, and what remains of each amino acid is called an amino-acid residue.
database_cross_reference: Dummy:dummy

Axiom
annotated source: amino-acid residue
annotated property: has_exact_synonym
annotated target: amino-acid residue
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: amino-acid residue
annotated property: has_narrow_synonym
annotated target: protein residue
database_cross_reference: PRO:DAN

Axiom
annotated source: amino-acid residue
annotated property: has_related_synonym
annotated target: amino acid residue
database_cross_reference: ChEBI

Axiom
annotated source: amino-acid residue
annotated property: has_related_synonym
annotated target: amino-acid residues
database_cross_reference: JCBN

amino acid
type: Class
subclass of: carboxylic acid
subclass of: organic amino compound
subclass of: Restriction
  on property: is conjugate acid of
  some values from: amino-acid anion
definition: A carboxylic acid containing one or more amino groups.
has alternative id: CHEBI:13815
has alternative id: CHEBI:22477
database_cross_reference: Wikipedia:Amino_acid
has OBO namespace: chebi_ontology
has_related_synonym: Aminocarbonsaeure
has_related_synonym: Aminokarbonsaeure
has_related_synonym: Aminosaeure
has_related_synonym: amino acids
id: CHEBI:33709
in_subset: 3 STAR

Axiom
annotated source: amino acid
annotated property: has_related_synonym
annotated target: Aminocarbonsaeure
database_cross_reference: ChEBI

Axiom
annotated source: amino acid
annotated property: has_related_synonym
annotated target: Aminokarbonsaeure
database_cross_reference: ChEBI

Axiom
annotated source: amino acid
annotated property: has_related_synonym
annotated target: Aminosaeure
database_cross_reference: ChEBI

Axiom
annotated source: amino acid
annotated property: has_related_synonym
annotated target: amino acids
database_cross_reference: ChEBI

alpha-amino-acid residue
type: Class
subclass of: amino-acid residue
subclass of: Restriction
  on property: is substituent group from
  some values from: alpha-amino acid
has OBO namespace: chebi_ontology
has_related_synonym: alpha-amino-acid residues
id: CHEBI:33710
in_subset: 3 STAR

Axiom
annotated source: alpha-amino-acid residue
annotated property: has_related_synonym
annotated target: alpha-amino-acid residues
database_cross_reference: ChEBI

carbohydrate acid
type: Class
subclass of: carbohydrate
subclass of: carboxylic acid
subclass of: Restriction
  on property: is conjugate acid of
  some values from: carbohydrate acid anion
has_exact_synonym: carbohydrate acid
has OBO namespace: chebi_ontology
has_related_synonym: carbohydrate acids
id: CHEBI:33720
in_subset: 3 STAR

Axiom
annotated source: carbohydrate acid
annotated property: has_exact_synonym
annotated target: carbohydrate acid
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate acid
annotated property: has_related_synonym
annotated target: carbohydrate acids
database_cross_reference: ChEBI

carbohydrate acid anion
type: Class
subclass of: carboxylic acid anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: carbohydrate acid
has_exact_synonym: carbohydrate acid anion
has OBO namespace: chebi_ontology
has_related_synonym: carbohydrate acid anions
id: CHEBI:33721
in_subset: 3 STAR

Axiom
annotated source: carbohydrate acid anion
annotated property: has_exact_synonym
annotated target: carbohydrate acid anion
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate acid anion
annotated property: has_related_synonym
annotated target: carbohydrate acid anions
database_cross_reference: ChEBI

canonical nucleoside residue
type: Class
subclass of: nucleoside residue
has OBO namespace: chebi_ontology
has_related_synonym: canonical nucleoside residues
has_related_synonym: common nucleoside residues
has_related_synonym: nucleoside residue
has_related_synonym: standard nucleoside residues
id: CHEBI:33791
in_subset: 3 STAR

Axiom
annotated source: canonical nucleoside residue
annotated property: has_related_synonym
annotated target: canonical nucleoside residues
database_cross_reference: ChEBI

Axiom
annotated source: canonical nucleoside residue
annotated property: has_related_synonym
annotated target: common nucleoside residues
database_cross_reference: CBN

Axiom
annotated source: canonical nucleoside residue
annotated property: has_related_synonym
annotated target: nucleoside residue
database_cross_reference: CBN

Axiom
annotated source: canonical nucleoside residue
annotated property: has_related_synonym
annotated target: standard nucleoside residues
database_cross_reference: ChEBI

canonical ribonucleoside residue
type: Class
subclass of: canonical nucleoside residue
has OBO namespace: chebi_ontology
has_related_synonym: N
has_related_synonym: Nuc
has_related_synonym: canonical ribonucleoside residues
has_related_synonym: common ribonucleoside residue
has_related_synonym: common ribonucleoside residues
has_related_synonym: standard ribonucleoside residues
id: CHEBI:33792
in_subset: 3 STAR

Axiom
annotated source: canonical ribonucleoside residue
annotated property: has_related_synonym
annotated target: N
database_cross_reference: CBN

Axiom
annotated source: canonical ribonucleoside residue
annotated property: has_related_synonym
annotated target: Nuc
database_cross_reference: CBN

Axiom
annotated source: canonical ribonucleoside residue
annotated property: has_related_synonym
annotated target: canonical ribonucleoside residues
database_cross_reference: ChEBI

Axiom
annotated source: canonical ribonucleoside residue
annotated property: has_related_synonym
annotated target: common ribonucleoside residue
database_cross_reference: CBN

Axiom
annotated source: canonical ribonucleoside residue
annotated property: has_related_synonym
annotated target: common ribonucleoside residues
database_cross_reference: CBN

Axiom
annotated source: canonical ribonucleoside residue
annotated property: has_related_synonym
annotated target: standard ribonucleoside residues
database_cross_reference: ChEBI

canonical deoxyribonucleoside residue
type: Class
subclass of: canonical nucleoside residue
has OBO namespace: chebi_ontology
has_related_synonym: canonical deoxyribonucleoside residues
has_related_synonym: common 2'-deoxyribonucleoside residue
has_related_synonym: common 2'-deoxyribonucleoside residues
has_related_synonym: dN
has_related_synonym: dNuc
has_related_synonym: standard deoxyribonucleoside residues
id: CHEBI:33793
in_subset: 3 STAR

Axiom
annotated source: canonical deoxyribonucleoside residue
annotated property: has_related_synonym
annotated target: canonical deoxyribonucleoside residues
database_cross_reference: ChEBI

Axiom
annotated source: canonical deoxyribonucleoside residue
annotated property: has_related_synonym
annotated target: common 2'-deoxyribonucleoside residue
database_cross_reference: CBN

Axiom
annotated source: canonical deoxyribonucleoside residue
annotated property: has_related_synonym
annotated target: common 2'-deoxyribonucleoside residues
database_cross_reference: CBN

Axiom
annotated source: canonical deoxyribonucleoside residue
annotated property: has_related_synonym
annotated target: dN
database_cross_reference: CBN

Axiom
annotated source: canonical deoxyribonucleoside residue
annotated property: has_related_synonym
annotated target: dNuc
database_cross_reference: CBN

Axiom
annotated source: canonical deoxyribonucleoside residue
annotated property: has_related_synonym
annotated target: standard deoxyribonucleoside residues
database_cross_reference: ChEBI

organic hydroxy compound
type: Class
subclass of: hydroxides
subclass of: organic molecular entity
definition: An organic compound having at least one hydroxy group attached to a carbon atom.
has alternative id: CHEBI:64710
has_exact_synonym: hydroxy compounds
has OBO namespace: chebi_ontology
has_related_synonym: organic alcohol
has_related_synonym: organic hydroxy compounds
id: CHEBI:33822
in_subset: 3 STAR

Axiom
annotated source: organic hydroxy compound
annotated property: has_exact_synonym
annotated target: hydroxy compounds
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: organic hydroxy compound
annotated property: has_related_synonym
annotated target: organic alcohol
database_cross_reference: ChEBI

Axiom
annotated source: organic hydroxy compound
annotated property: has_related_synonym
annotated target: organic hydroxy compounds
database_cross_reference: ChEBI

organic cyclic compound
type: Class
subclass of: cyclic compound
subclass of: organic molecule
definition: Any organic molecule that consists of atoms connected in the form of a ring.
has OBO namespace: chebi_ontology
has_related_synonym: organic cyclic compounds
id: CHEBI:33832
in_subset: 3 STAR

Axiom
annotated source: organic cyclic compound
annotated property: has_related_synonym
annotated target: organic cyclic compounds
database_cross_reference: ChEBI

heteroarene
type: Class
subclass of: organic heterocyclic compound
subclass of: organic aromatic compound
definition: A heterocyclic compound formally derived from an arene by replacement of one or more methine (-C=) and/or vinylene (-CH=CH-) groups by trivalent or divalent heteroatoms, respectively, in such a way as to maintain the continuous pi-electron system characteristic of aromatic systems and a number of out-of-plane pi-electrons corresponding to the Hueckel rule (4n+2).
has_exact_synonym: heteroarenes
has OBO namespace: chebi_ontology
has_related_synonym: hetarenes
id: CHEBI:33833
in_subset: 3 STAR

Axiom
annotated source: heteroarene
annotated property: has_exact_synonym
annotated target: heteroarenes
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: heteroarene
annotated property: has_related_synonym
annotated target: hetarenes
database_cross_reference: IUPAC

conjugated protein
type: Class
subclass of: protein
subclass of: PR_000000001
definition: Conjugated protein is a protein that contains a non-peptide component, usually in stoichiometric proportion.
database_cross_reference: COMe:PRX000001
has_exact_synonym: conjugated proteins
has OBO namespace: chebi_ontology
has_related_synonym: complex protein
id: CHEBI:33837
in_subset: 3 STAR

Axiom
annotated source: conjugated protein
annotated property: has_exact_synonym
annotated target: conjugated proteins
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: conjugated protein
annotated property: has_related_synonym
annotated target: complex protein
database_cross_reference: COMe

macromolecule
type: Class
subclass of: polyatomic entity
definition: A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
database_cross_reference: Wikipedia:Macromolecule
has_exact_synonym: macromolecule
has OBO namespace: chebi_ontology
has_related_synonym: macromolecules
has_related_synonym: polymer
has_related_synonym: polymer molecule
has_related_synonym: polymers
id: CHEBI:33839
in_subset: 3 STAR

Axiom
annotated source: macromolecule
annotated property: has_exact_synonym
annotated target: macromolecule
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: macromolecule
annotated property: has_related_synonym
annotated target: macromolecules
database_cross_reference: ChEBI

Axiom
annotated source: macromolecule
annotated property: has_related_synonym
annotated target: polymer
database_cross_reference: ChEBI

Axiom
annotated source: macromolecule
annotated property: has_related_synonym
annotated target: polymer molecule
database_cross_reference: IUPAC

Axiom
annotated source: macromolecule
annotated property: has_related_synonym
annotated target: polymers
database_cross_reference: ChEBI

phenols
type: Class
subclass of: organic aromatic compound
subclass of: organic hydroxy compound
definition: Organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring.
charge: 0
formula: C6HOR5
mass: 89.072
monoisotopicmass: 89.00274
smiles: C1(=C(C(=C(C(=C1*)*)*)*)*)O
has alternative id: CHEBI:13664
has alternative id: CHEBI:13825
has alternative id: CHEBI:25969
has alternative id: CHEBI:2857
database_cross_reference: KEGG:C15584
database_cross_reference: MetaCyc:Phenols
database_cross_reference: Wikipedia:Phenols
has_exact_synonym: phenols
has OBO namespace: chebi_ontology
has_related_synonym: Aryl alcohol
has_related_synonym: a phenol
has_related_synonym: arenols
id: CHEBI:33853
in_subset: 3 STAR

Axiom
annotated source: phenols
annotated property: has_exact_synonym
annotated target: phenols
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: phenols
annotated property: has_related_synonym
annotated target: Aryl alcohol
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: phenols
annotated property: has_related_synonym
annotated target: a phenol
database_cross_reference: UniProt

Axiom
annotated source: phenols
annotated property: has_related_synonym
annotated target: arenols
database_cross_reference: IUPAC

reagent
type: Class
subclass of: application
definition: A substance used in a chemical reaction to detect, measure, examine, or produce other substances.
has_exact_synonym: reagent
has OBO namespace: chebi_ontology
has_related_synonym: reactif
has_related_synonym: reactivo
has_related_synonym: reagents
id: CHEBI:33893
in_subset: 3 STAR

Axiom
annotated source: reagent
annotated property: has_exact_synonym
annotated target: reagent
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: reagent
annotated property: has_related_synonym
annotated target: reactif
database_cross_reference: IUPAC

Axiom
annotated source: reagent
annotated property: has_related_synonym
annotated target: reactivo
database_cross_reference: IUPAC

Axiom
annotated source: reagent
annotated property: has_related_synonym
annotated target: reagents
database_cross_reference: ChEBI

metallotetrapyrrole
type: Class
subclass of: cyclic tetrapyrrole
has OBO namespace: chebi_ontology
has_related_synonym: metal-tetrapyrrole
has_related_synonym: metal-tetrapyrrole complex
has_related_synonym: metallotetrapyrroles
id: CHEBI:33909
in_subset: 3 STAR

Axiom
annotated source: metallotetrapyrrole
annotated property: has_related_synonym
annotated target: metal-tetrapyrrole
database_cross_reference: ChEBI

Axiom
annotated source: metallotetrapyrrole
annotated property: has_related_synonym
annotated target: metal-tetrapyrrole complex
database_cross_reference: ChEBI

Axiom
annotated source: metallotetrapyrrole
annotated property: has_related_synonym
annotated target: metallotetrapyrroles
database_cross_reference: ChEBI

macronutrient
type: Class
subclass of: nutrient
definition: Any nutrient required in large quantities by organisms throughout their life in order to orchestrate a range of physiological functions. Macronutrients are usually chemical elements (carbon, hydrogen, nitrogen, oxygen, phosphorus and sulfur) that humans consume in the largest quantities. Calcium, sodium, magnesium and potassium are sometimes included as macronutrients because they are required in relatively large quantities compared with other vitamins and minerals.
has OBO namespace: chebi_ontology
has_related_synonym: macronutrients
id: CHEBI:33937
in_subset: 3 STAR

Axiom
annotated source: macronutrient
annotated property: has_related_synonym
annotated target: macronutrients
database_cross_reference: ChEBI

magnesium coordination entity
type: Class
subclass of: magnesium molecular entity
subclass of: alkaline earth coordination entity
has_exact_synonym: magnesium coordination entity
has OBO namespace: chebi_ontology
has_related_synonym: magnesium coordination compounds
has_related_synonym: magnesium coordination entities
id: CHEBI:33976
in_subset: 3 STAR

Axiom
annotated source: magnesium coordination entity
annotated property: has_exact_synonym
annotated target: magnesium coordination entity
database_cross_reference: ChEBI

Axiom
annotated source: magnesium coordination entity
annotated property: has_related_synonym
annotated target: magnesium coordination compounds
database_cross_reference: ChEBI

Axiom
annotated source: magnesium coordination entity
annotated property: has_related_synonym
annotated target: magnesium coordination entities
database_cross_reference: ChEBI

serotonin(1+)
type: Class
subclass of: ammonium ion derivative
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: is conjugate acid of
  some values from: serotonin
definition: An ammonium ion that is the conjugate acid of serotonin; major species at pH 7.3.
charge: +1
formula: C10H13N2O
inchi: InChI=1S/C10H12N2O/c11-4-3-7-6-12-10-2-1-8(13)5-9(7)10/h1-2,5-6,12-13H,3-4,11H2/p+1
inchikey: QZAYGJVTTNCVMB-UHFFFAOYSA-O
mass: 177.22250
monoisotopicmass: 177.10224
smiles: [NH3+]CCc1c[nH]c2ccc(O)cc12
has_exact_synonym: 2-(5-hydroxy-1H-indol-3-yl)ethanaminium
has OBO namespace: chebi_ontology
has_related_synonym: serotonin
has_related_synonym: serotonin cation
id: CHEBI:350546
in_subset: 3 STAR

Axiom
annotated source: serotonin(1+)
annotated property: has_exact_synonym
annotated target: 2-(5-hydroxy-1H-indol-3-yl)ethanaminium
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: serotonin(1+)
annotated property: has_related_synonym
annotated target: serotonin
database_cross_reference: UniProt

Axiom
annotated source: serotonin(1+)
annotated property: has_related_synonym
annotated target: serotonin cation
database_cross_reference: ChEBI

nitrogen hydride
type: Class
subclass of: pnictogen hydride
subclass of: nitrogen molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: nitrogen hydrides
id: CHEBI:35106
in_subset: 3 STAR

Axiom
annotated source: nitrogen hydride
annotated property: has_related_synonym
annotated target: nitrogen hydrides
database_cross_reference: ChEBI

azane
type: Class
subclass of: nitrogen hydride
definition: Saturated acyclic nitrogen hydrides having the general formula NnHn+2.
has OBO namespace: chebi_ontology
has_related_synonym: azanes
id: CHEBI:35107
in_subset: 3 STAR

Axiom
annotated source: azane
annotated property: has_related_synonym
annotated target: azanes
database_cross_reference: ChEBI

alkaline earth coordination entity
type: Class
subclass of: alkaline earth molecular entity
subclass of: main-group coordination entity
has_exact_synonym: alkaline earth coordination entity
has OBO namespace: chebi_ontology
has_related_synonym: alkaline earth coordination compounds
has_related_synonym: alkaline earth coordination entities
id: CHEBI:35217
in_subset: 3 STAR

Axiom
annotated source: alkaline earth coordination entity
annotated property: has_exact_synonym
annotated target: alkaline earth coordination entity
database_cross_reference: ChEBI

Axiom
annotated source: alkaline earth coordination entity
annotated property: has_related_synonym
annotated target: alkaline earth coordination compounds
database_cross_reference: ChEBI

Axiom
annotated source: alkaline earth coordination entity
annotated property: has_related_synonym
annotated target: alkaline earth coordination entities
database_cross_reference: ChEBI

inhibitor
type: Class
subclass of: biological role
definition: A substance that diminishes the rate of a chemical reaction.
has_exact_synonym: inhibitor
has OBO namespace: chebi_ontology
has_related_synonym: inhibidor
has_related_synonym: inhibiteur
has_related_synonym: inhibitors
id: CHEBI:35222
in_subset: 3 STAR

Axiom
annotated source: inhibitor
annotated property: has_exact_synonym
annotated target: inhibitor
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: inhibitor
annotated property: has_related_synonym
annotated target: inhibidor
database_cross_reference: ChEBI

Axiom
annotated source: inhibitor
annotated property: has_related_synonym
annotated target: inhibiteur
database_cross_reference: ChEBI

Axiom
annotated source: inhibitor
annotated property: has_related_synonym
annotated target: inhibitors
database_cross_reference: ChEBI

catalyst
type: Class
subclass of: chemical role
definition: A substance that increases the rate of a reaction without modifying the overall standard Gibbs energy change in the reaction.
has_exact_synonym: catalyst
has OBO namespace: chebi_ontology
has_related_synonym: Katalysator
has_related_synonym: catalizador
has_related_synonym: catalyseur
id: CHEBI:35223
in_subset: 3 STAR

Axiom
annotated source: catalyst
annotated property: has_exact_synonym
annotated target: catalyst
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: catalyst
annotated property: has_related_synonym
annotated target: Katalysator
database_cross_reference: ChEBI

Axiom
annotated source: catalyst
annotated property: has_related_synonym
annotated target: catalizador
database_cross_reference: ChEBI

Axiom
annotated source: catalyst
annotated property: has_related_synonym
annotated target: catalyseur
database_cross_reference: ChEBI

fossil fuel
type: Class
subclass of: fuel
definition: A fuel such as coal, oil and natural gas which has formed over many years through the decomposition of deposited vegetation which was under extreme pressure of an overburden of earth.
has_exact_synonym: fossil fuel
has OBO namespace: chebi_ontology
id: CHEBI:35230
in_subset: 3 STAR

Axiom
annotated source: fossil fuel
annotated property: has_exact_synonym
annotated target: fossil fuel
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

amino acid zwitterion
type: Class
subclass of: zwitterion
definition: The zwitterionic form of an amino acid having a negatively charged carboxyl group and a positively charged amino group.
has_exact_synonym: amino acid zwitterion
has OBO namespace: chebi_ontology
id: CHEBI:35238
in_subset: 3 STAR

Axiom
annotated source: amino acid zwitterion
annotated property: has_exact_synonym
annotated target: amino acid zwitterion
database_cross_reference: ChEBI

ammonium ion derivative
type: Class
subclass of: polyatomic cation
subclass of: nitrogen molecular entity
subclass of: Restriction
  on property: has parent hydride
  some values from: ammonium
definition: A derivative of ammonium, NH4(+), in which one (or more) of the hydrogens bonded to the nitrogen have been replaced with univalent organyl groups. The substituting carbon of the organyl group must not itself be directly attached to a heteroatom (thereby excluding protonated amides, hemiaminals, etc).
has OBO namespace: chebi_ontology
has_related_synonym: ammonium ion derivatives
has_related_synonym: azanium ion derivative
has_related_synonym: azanium ion derivatives
id: CHEBI:35274
in_subset: 3 STAR

Axiom
annotated source: ammonium ion derivative
annotated property: has_related_synonym
annotated target: ammonium ion derivatives
database_cross_reference: ChEBI

Axiom
annotated source: ammonium ion derivative
annotated property: has_related_synonym
annotated target: azanium ion derivative
database_cross_reference: ChEBI

Axiom
annotated source: ammonium ion derivative
annotated property: has_related_synonym
annotated target: azanium ion derivatives
database_cross_reference: ChEBI

steroid
type: Class
subclass of: lipid
subclass of: organic polycyclic compound
definition: Any of naturally occurring compounds and synthetic analogues, based on the cyclopenta[a]phenanthrene carbon skeleton, partially or completely hydrogenated; there are usually methyl groups at C-10 and C-13, and often an alkyl group at C-17. By extension, one or more bond scissions, ring expansions and/or ring contractions of the skeleton may have occurred. Natural steroids are derived biogenetically from squalene which is a triterpene.
charge: 0
formula: C19H31R
mass: 259.450
monoisotopicmass: 259.24258
smiles: C12C(C3C(C(CC3)*)(C)CC1)CCC4C2(CCCC4)C
has alternative id: CHEBI:13687
has alternative id: CHEBI:26768
has alternative id: CHEBI:9263
database_cross_reference: KEGG:C00377
database_cross_reference: MetaCyc:Steroids
has_exact_synonym: Steroid
has_exact_synonym: steroids
has OBO namespace: chebi_ontology
has_related_synonym: a steroid
id: CHEBI:35341
in_subset: 3 STAR

Axiom
annotated source: steroid
annotated property: has_exact_synonym
annotated target: Steroid
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: steroid
annotated property: has_exact_synonym
annotated target: steroids
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: steroid
annotated property: has_related_synonym
annotated target: a steroid
database_cross_reference: UniProt

organonitrogen compound
type: Class
subclass of: heteroorganic entity
subclass of: nitrogen molecular entity
definition: Any heteroorganic entity containing at least one carbon-nitrogen bond.
has_exact_synonym: organonitrogen compounds
has OBO namespace: chebi_ontology
has_related_synonym: organonitrogens
id: CHEBI:35352
in_subset: 3 STAR

Axiom
annotated source: organonitrogen compound
annotated property: has_exact_synonym
annotated target: organonitrogen compounds
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: organonitrogen compound
annotated property: has_related_synonym
annotated target: organonitrogens
database_cross_reference: ChEBI

oxoanion
type: Class
subclass of: oxide
subclass of: polyatomic anion
definition: An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen.
has alternative id: CHEBI:33274
has alternative id: CHEBI:33436
has_exact_synonym: oxoanion
has OBO namespace: chebi_ontology
has_related_synonym: oxoacid anions
has_related_synonym: oxoanions
id: CHEBI:35406
in_subset: 3 STAR

Axiom
annotated source: oxoanion
annotated property: has_exact_synonym
annotated target: oxoanion
database_cross_reference: ChEBI

Axiom
annotated source: oxoanion
annotated property: has_related_synonym
annotated target: oxoacid anions
database_cross_reference: ChEBI

Axiom
annotated source: oxoanion
annotated property: has_related_synonym
annotated target: oxoanions
database_cross_reference: ChEBI

anti-inflammatory drug
type: Class
subclass of: drug
subclass of: anti-inflammatory agent
definition: A substance that reduces or suppresses inflammation.
has OBO namespace: chebi_ontology
has_related_synonym: anti-inflammatory drugs
has_related_synonym: antiinflammatory agent
has_related_synonym: antiinflammatory drug
has_related_synonym: antiinflammatory drugs
id: CHEBI:35472
in_subset: 3 STAR

Axiom
annotated source: anti-inflammatory drug
annotated property: has_related_synonym
annotated target: anti-inflammatory drugs
database_cross_reference: ChEBI

Axiom
annotated source: anti-inflammatory drug
annotated property: has_related_synonym
annotated target: antiinflammatory agent
database_cross_reference: ChEBI

Axiom
annotated source: anti-inflammatory drug
annotated property: has_related_synonym
annotated target: antiinflammatory drug
database_cross_reference: ChEBI

Axiom
annotated source: anti-inflammatory drug
annotated property: has_related_synonym
annotated target: antiinflammatory drugs
database_cross_reference: ChEBI

cardiovascular drug
type: Class
subclass of: drug
definition: A drug that affects the rate or intensity of cardiac contraction, blood vessel diameter or blood volume.
has OBO namespace: chebi_ontology
has_related_synonym: cardiovascular agent
has_related_synonym: cardiovascular drugs
id: CHEBI:35554
in_subset: 3 STAR

Axiom
annotated source: cardiovascular drug
annotated property: has_related_synonym
annotated target: cardiovascular agent
database_cross_reference: ChEBI

Axiom
annotated source: cardiovascular drug
annotated property: has_related_synonym
annotated target: cardiovascular drugs
database_cross_reference: ChEBI

carbon oxoacid
type: Class
subclass of: oxoacid
subclass of: organooxygen compound
has OBO namespace: chebi_ontology
has_related_synonym: carbon oxoacids
has_related_synonym: oxoacids of carbon
id: CHEBI:35605
in_subset: 3 STAR

Axiom
annotated source: carbon oxoacid
annotated property: has_related_synonym
annotated target: carbon oxoacids
database_cross_reference: ChEBI

Axiom
annotated source: carbon oxoacid
annotated property: has_related_synonym
annotated target: oxoacids of carbon
database_cross_reference: ChEBI

vasodilator agent
type: Class
subclass of: cardiovascular drug
definition: A drug used to cause dilation of the blood vessels.
has OBO namespace: chebi_ontology
has_related_synonym: vasodilator
has_related_synonym: vasodilator agents
id: CHEBI:35620
in_subset: 3 STAR

Axiom
annotated source: vasodilator agent
annotated property: has_related_synonym
annotated target: vasodilator
database_cross_reference: ChEBI

Axiom
annotated source: vasodilator agent
annotated property: has_related_synonym
annotated target: vasodilator agents
database_cross_reference: ChEBI

ester
type: Class
subclass of: organooxygen compound
definition: A compound formally derived from an oxoacid RkE(=O)l(OH)m (l > 0) and an alcohol, phenol, heteroarenol, or enol by linking with formal loss of water from an acidic hydroxy group of the former and a hydroxy group of the latter.
has alternative id: CHEBI:23960
has alternative id: CHEBI:4859
database_cross_reference: KEGG:C00287
database_cross_reference: Wikipedia:Ester
has_exact_synonym: Ester
has OBO namespace: chebi_ontology
has_related_synonym: esters
id: CHEBI:35701
in_subset: 3 STAR

Axiom
annotated source: ester
annotated property: has_exact_synonym
annotated target: Ester
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: ester
annotated property: has_related_synonym
annotated target: esters
database_cross_reference: ChEBI

sulfated glycosaminoglycan
type: Class
subclass of: glycosaminoglycan
subclass of: carbohydrate sulfate
has OBO namespace: chebi_ontology
has_related_synonym: glycosaminoglycan sulfate
has_related_synonym: glycosaminoglycan sulfates
has_related_synonym: sulfated glycosaminoglycans
id: CHEBI:35722
in_subset: 3 STAR

Axiom
annotated source: sulfated glycosaminoglycan
annotated property: has_related_synonym
annotated target: glycosaminoglycan sulfate
database_cross_reference: ChEBI

Axiom
annotated source: sulfated glycosaminoglycan
annotated property: has_related_synonym
annotated target: glycosaminoglycan sulfates
database_cross_reference: ChEBI

Axiom
annotated source: sulfated glycosaminoglycan
annotated property: has_related_synonym
annotated target: sulfated glycosaminoglycans
database_cross_reference: ChEBI

carbohydrate sulfate
type: Class
subclass of: organic sulfate
subclass of: sulfuric ester
subclass of: carbohydrate derivative
has OBO namespace: chebi_ontology
has_related_synonym: carbohydrate sulfates
has_related_synonym: carbohydrate sulphates
id: CHEBI:35724
in_subset: 3 STAR

Axiom
annotated source: carbohydrate sulfate
annotated property: has_related_synonym
annotated target: carbohydrate sulfates
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate sulfate
annotated property: has_related_synonym
annotated target: carbohydrate sulphates
database_cross_reference: ChEBI

monocarboxylic acid anion
type: Class
subclass of: carboxylic acid anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: monocarboxylic acid
definition: A carboxylic acid anion formed when the carboxy group of a monocarboxylic acid is deprotonated.
charge: -1
formula: CO2R
mass: 44.01000
monoisotopicmass: 43.98983
smiles: [O-]C([*])=O
has alternative id: CHEBI:13657
has alternative id: CHEBI:25382
has alternative id: CHEBI:3407
database_cross_reference: KEGG:C00060
has OBO namespace: chebi_ontology
has_related_synonym: Carboxylate
has_related_synonym: Monocarboxylate
has_related_synonym: a monocarboxylate
has_related_synonym: monocarboxylates
has_related_synonym: monocarboxylic acid anions
id: CHEBI:35757
in_subset: 3 STAR

Axiom
annotated source: monocarboxylic acid anion
annotated property: has_related_synonym
annotated target: Carboxylate
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: monocarboxylic acid anion
annotated property: has_related_synonym
annotated target: Monocarboxylate
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: monocarboxylic acid anion
annotated property: has_related_synonym
annotated target: a monocarboxylate
database_cross_reference: UniProt

Axiom
annotated source: monocarboxylic acid anion
annotated property: has_related_synonym
annotated target: monocarboxylates
database_cross_reference: ChEBI

Axiom
annotated source: monocarboxylic acid anion
annotated property: has_related_synonym
annotated target: monocarboxylic acid anions
database_cross_reference: ChEBI

phosphate ion
type: Class
subclass of: phosphorus oxoanion
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: is conjugate base of
  some values from: phosphoric acid
definition: A phosphorus oxoanion that is the conjugate base of phosphoric acid.
has OBO namespace: chebi_ontology
has_related_synonym: Pi
has_related_synonym: phosphate
has_related_synonym: phosphate ions
id: CHEBI:35780
in_subset: 3 STAR

Axiom
annotated source: phosphate ion
annotated property: has_related_synonym
annotated target: Pi
database_cross_reference: ChEBI

Axiom
annotated source: phosphate ion
annotated property: has_related_synonym
annotated target: phosphate
database_cross_reference: ChEBI

Axiom
annotated source: phosphate ion
annotated property: has_related_synonym
annotated target: phosphate ions
database_cross_reference: ChEBI

pnictogen hydride
type: Class
subclass of: inorganic hydride
subclass of: pnictogen molecular entity
has_exact_synonym: pnictogen hydride
has OBO namespace: chebi_ontology
has_related_synonym: pnictogen hydrides
id: CHEBI:35881
in_subset: 3 STAR

Axiom
annotated source: pnictogen hydride
annotated property: has_exact_synonym
annotated target: pnictogen hydride
database_cross_reference: ChEBI

Axiom
annotated source: pnictogen hydride
annotated property: has_related_synonym
annotated target: pnictogen hydrides
database_cross_reference: ChEBI

protein
type: Class
equivalent class: PR_000000001
subclass of: PR_000000001
definition: A biological macromolecule minimally consisting of one polypeptide chain synthesized at the ribosome.
has alternative id: CHEBI:13677
has alternative id: CHEBI:14911
has_exact_synonym: proteins
has OBO namespace: chebi_ontology
id: CHEBI:36080
in_subset: 3 STAR

Axiom
annotated source: protein
annotated property: has_exact_synonym
annotated target: proteins
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

dicarboxylic acid monoester
type: Class
subclass of: dicarboxylic acids and O-substituted derivatives
subclass of: carboxylic ester
subclass of: carboxylic acid
subclass of: Restriction
  on property: is conjugate acid of
  some values from: dicarboxylic acid monoester(1-)
definition: A monoester of a dicarboxylic acid.
has OBO namespace: chebi_ontology
has_related_synonym: dicarboxylic acid monoesters
id: CHEBI:36244
in_subset: 3 STAR

Axiom
annotated source: dicarboxylic acid monoester
annotated property: has_related_synonym
annotated target: dicarboxylic acid monoesters
database_cross_reference: ChEBI

cyclic tetrapyrrole
type: Class
subclass of: tetrapyrrole
subclass of: cyclic polypyrrole
has_exact_synonym: macrocyclic tetrapyrroles
has OBO namespace: chebi_ontology
has_related_synonym: cyclic tetrapyrroles
has_related_synonym: macrocyclic tetrapyrrole
id: CHEBI:36309
in_subset: 3 STAR

Axiom
annotated source: cyclic tetrapyrrole
annotated property: has_exact_synonym
annotated target: macrocyclic tetrapyrroles
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: cyclic tetrapyrrole
annotated property: has_related_synonym
annotated target: cyclic tetrapyrroles
database_cross_reference: ChEBI

Axiom
annotated source: cyclic tetrapyrrole
annotated property: has_related_synonym
annotated target: macrocyclic tetrapyrrole
database_cross_reference: ChEBI

lepton
type: Class
subclass of: fundamental particle
subclass of: fermion
definition: Lepton is a fermion that does not experience the strong force (strong interaction). The term is derived from the Greek lambdaepsilonpitauomicronsigma (small, thin).
has OBO namespace: chebi_ontology
has_related_synonym: leptons
id: CHEBI:36338
in_subset: 3 STAR

Axiom
annotated source: lepton
annotated property: has_related_synonym
annotated target: leptons
database_cross_reference: ChEBI

baryon
type: Class
subclass of: fermion
subclass of: hadron
definition: Baryon is a fermion that does experience the strong force (strong interaction). The term is derived from the Greek betaalpharhoupsilonsigma (heavy).
has OBO namespace: chebi_ontology
has_related_synonym: baryons
id: CHEBI:36339
in_subset: 3 STAR

Axiom
annotated source: baryon
annotated property: has_related_synonym
annotated target: baryons
database_cross_reference: ChEBI

fermion
type: Class
subclass of: subatomic particle
definition: Particle of half-integer spin quantum number following Fermi-Dirac statistics. Fermions are named after Enrico Fermi.
has_exact_synonym: fermion
has OBO namespace: chebi_ontology
has_related_synonym: fermions
id: CHEBI:36340
in_subset: 3 STAR

Axiom
annotated source: fermion
annotated property: has_exact_synonym
annotated target: fermion
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: fermion
annotated property: has_related_synonym
annotated target: fermions
database_cross_reference: ChEBI

boson
type: Class
subclass of: subatomic particle
definition: Particle of integer spin quantum number following Bose-Einstein statistics. Bosons are named after Satyendra Nath Bose.
has_exact_synonym: boson
has OBO namespace: chebi_ontology
has_related_synonym: bosons
id: CHEBI:36341
in_subset: 3 STAR

Axiom
annotated source: boson
annotated property: has_exact_synonym
annotated target: boson
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: boson
annotated property: has_related_synonym
annotated target: bosons
database_cross_reference: ChEBI

subatomic particle
type: Class
subclass of: material entity
definition: A particle smaller than an atom.
database_cross_reference: Wikipedia:Subatomic_particle
has OBO namespace: chebi_ontology
has_related_synonym: subatomic particles
id: CHEBI:36342
in_subset: 3 STAR

Axiom
annotated source: subatomic particle
annotated property: has_related_synonym
annotated target: subatomic particles
database_cross_reference: ChEBI

composite particle
type: Class
subclass of: subatomic particle
definition: A subatomic particle known to have substructure (i.e. consisting of smaller particles).
has OBO namespace: chebi_ontology
has_related_synonym: composite particles
id: CHEBI:36343
in_subset: 3 STAR

Axiom
annotated source: composite particle
annotated property: has_related_synonym
annotated target: composite particles
database_cross_reference: ChEBI

hadron
type: Class
subclass of: composite particle
definition: Hadron is a subatomic particle which experiences the strong force.
has OBO namespace: chebi_ontology
has_related_synonym: hadrons
id: CHEBI:36344
in_subset: 3 STAR

Axiom
annotated source: hadron
annotated property: has_related_synonym
annotated target: hadrons
database_cross_reference: ChEBI

nuclear particle
type: Class
subclass of: subatomic particle
definition: A nucleus or any of its constituents in any of their energy states.
has_exact_synonym: nuclear particle
has OBO namespace: chebi_ontology
id: CHEBI:36347
in_subset: 3 STAR

Axiom
annotated source: nuclear particle
annotated property: has_exact_synonym
annotated target: nuclear particle
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

polyatomic entity
type: Class
subclass of: molecular entity
subclass of: Restriction
  on property: has part
  some values from: group
definition: Any molecular entity consisting of more than one atom.
has OBO namespace: chebi_ontology
has_related_synonym: polyatomic entities
id: CHEBI:36357
in_subset: 3 STAR

Axiom
annotated source: polyatomic entity
annotated property: has_related_synonym
annotated target: polyatomic entities
database_cross_reference: ChEBI

polyatomic ion
type: Class
subclass of: ion
subclass of: polyatomic entity
definition: An ion consisting of more than one atom.
has OBO namespace: chebi_ontology
has_related_synonym: polyatomic ions
id: CHEBI:36358
in_subset: 3 STAR

Axiom
annotated source: polyatomic ion
annotated property: has_related_synonym
annotated target: polyatomic ions
database_cross_reference: ChEBI

phosphorus oxoacid derivative
type: Class
subclass of: oxoacid derivative
subclass of: phosphorus oxoacids and derivatives
subclass of: Restriction
  on property: has functional parent
  some values from: phosphorus oxoacid
has_exact_synonym: phosphorus oxoacid derivative
has OBO namespace: chebi_ontology
id: CHEBI:36359
in_subset: 3 STAR

Axiom
annotated source: phosphorus oxoacid derivative
annotated property: has_exact_synonym
annotated target: phosphorus oxoacid derivative
database_cross_reference: ChEBI

phosphorus oxoacids and derivatives
type: Class
subclass of: phosphorus molecular entity
has OBO namespace: chebi_ontology
id: CHEBI:36360
in_subset: 1 STAR

main-group coordination entity
type: Class
subclass of: coordination entity
subclass of: main group molecular entity
definition: A coordination entity in which the central atom to which the ligands are attached comes from groups 1, 2, 13, 14, 15, 16, 17, or 18 of the periodic table.
has OBO namespace: chebi_ontology
has_related_synonym: main group coordination compounds
has_related_synonym: main-group coordination entities
id: CHEBI:36562
in_subset: 3 STAR

Axiom
annotated source: main-group coordination entity
annotated property: has_related_synonym
annotated target: main group coordination compounds
database_cross_reference: ChEBI

Axiom
annotated source: main-group coordination entity
annotated property: has_related_synonym
annotated target: main-group coordination entities
database_cross_reference: ChEBI

carbonyl compound
type: Class
subclass of: organic oxo compound
subclass of: organooxygen compound
subclass of: Restriction
  on property: has part
  some values from: carbonyl group
definition: Any compound containing the carbonyl group, C=O. The term is commonly used in the restricted sense of aldehydes and ketones, although it actually includes carboxylic acids and derivatives.
has_exact_synonym: carbonyl compounds
has OBO namespace: chebi_ontology
id: CHEBI:36586
in_subset: 3 STAR

Axiom
annotated source: carbonyl compound
annotated property: has_exact_synonym
annotated target: carbonyl compounds
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

organic oxo compound
type: Class
subclass of: organic molecule
subclass of: Restriction
  on property: has part
  some values from: oxo group
definition: Organic compounds containing an oxygen atom, =O, doubly bonded to carbon or another element.
has_exact_synonym: oxo compounds
has OBO namespace: chebi_ontology
has_related_synonym: organic oxo compounds
id: CHEBI:36587
in_subset: 3 STAR

Axiom
annotated source: organic oxo compound
annotated property: has_exact_synonym
annotated target: oxo compounds
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: organic oxo compound
annotated property: has_related_synonym
annotated target: organic oxo compounds
database_cross_reference: ChEBI

chalcogen hydride
type: Class
subclass of: inorganic hydride
subclass of: chalcogen molecular entity
has_exact_synonym: chalcogen hydride
has OBO namespace: chebi_ontology
has_related_synonym: chalcogen hydrides
id: CHEBI:36902
in_subset: 3 STAR

Axiom
annotated source: chalcogen hydride
annotated property: has_exact_synonym
annotated target: chalcogen hydride
database_cross_reference: ChEBI

Axiom
annotated source: chalcogen hydride
annotated property: has_related_synonym
annotated target: chalcogen hydrides
database_cross_reference: ChEBI

inorganic ion
type: Class
subclass of: inorganic molecular entity
subclass of: ion
has OBO namespace: chebi_ontology
has_related_synonym: inorganic ions
id: CHEBI:36914
in_subset: 3 STAR

Axiom
annotated source: inorganic ion
annotated property: has_related_synonym
annotated target: inorganic ions
database_cross_reference: ChEBI

inorganic cation
type: Class
subclass of: inorganic ion
subclass of: cation
has OBO namespace: chebi_ontology
has_related_synonym: inorganic cations
id: CHEBI:36915
in_subset: 3 STAR

Axiom
annotated source: inorganic cation
annotated property: has_related_synonym
annotated target: inorganic cations
database_cross_reference: ChEBI

cation
type: Class
subclass of: ion
definition: A monoatomic or polyatomic species having one or more elementary charges of the proton.
has alternative id: CHEBI:23058
has alternative id: CHEBI:3473
database_cross_reference: KEGG:C01373
has_exact_synonym: Cation
has_exact_synonym: cation
has OBO namespace: chebi_ontology
has_related_synonym: Kation
has_related_synonym: Kationen
has_related_synonym: cationes
has_related_synonym: cations
id: CHEBI:36916
in_subset: 3 STAR

Axiom
annotated source: cation
annotated property: has_exact_synonym
annotated target: Cation
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: cation
annotated property: has_exact_synonym
annotated target: cation
database_cross_reference: ChEBI

Axiom
annotated source: cation
annotated property: has_exact_synonym
annotated target: cation
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: cation
annotated property: has_related_synonym
annotated target: Kation
database_cross_reference: ChEBI

Axiom
annotated source: cation
annotated property: has_related_synonym
annotated target: Kationen
database_cross_reference: ChEBI

Axiom
annotated source: cation
annotated property: has_related_synonym
annotated target: cationes
database_cross_reference: ChEBI

Axiom
annotated source: cation
annotated property: has_related_synonym
annotated target: cations
database_cross_reference: ChEBI

organochalcogen compound
type: Class
subclass of: heteroorganic entity
subclass of: chalcogen molecular entity
definition: An organochalcogen compound is a compound containing at least one carbon-chalcogen bond.
has_exact_synonym: organochalcogen compound
has OBO namespace: chebi_ontology
has_related_synonym: organochalcogen compounds
id: CHEBI:36962
in_subset: 3 STAR

Axiom
annotated source: organochalcogen compound
annotated property: has_exact_synonym
annotated target: organochalcogen compound
database_cross_reference: ChEBI

Axiom
annotated source: organochalcogen compound
annotated property: has_related_synonym
annotated target: organochalcogen compounds
database_cross_reference: ChEBI

organooxygen compound
type: Class
subclass of: oxygen molecular entity
subclass of: organochalcogen compound
definition: An organochalcogen compound containing at least one carbon-oxygen bond.
database_cross_reference: PMID:17586126
has_exact_synonym: organooxygen compound
has OBO namespace: chebi_ontology
has_related_synonym: organooxygen compounds
id: CHEBI:36963
in_subset: 3 STAR

Axiom
annotated source: organooxygen compound
annotated property: database_cross_reference
annotated target: PMID:17586126
source: Europe PMC

Axiom
annotated source: organooxygen compound
annotated property: has_exact_synonym
annotated target: organooxygen compound
database_cross_reference: ChEBI

Axiom
annotated source: organooxygen compound
annotated property: has_related_synonym
annotated target: organooxygen compounds
database_cross_reference: ChEBI

amino-acid anion
type: Class
subclass of: carboxylic acid anion
subclass of: organonitrogen compound
subclass of: Restriction
  on property: is conjugate base of
  some values from: amino acid
has_exact_synonym: amino-acid anion
has OBO namespace: chebi_ontology
has_related_synonym: amino acid anions
has_related_synonym: amino-acid anions
id: CHEBI:37022
in_subset: 3 STAR

Axiom
annotated source: amino-acid anion
annotated property: has_exact_synonym
annotated target: amino-acid anion
database_cross_reference: ChEBI

Axiom
annotated source: amino-acid anion
annotated property: has_related_synonym
annotated target: amino acid anions
database_cross_reference: ChEBI

Axiom
annotated source: amino-acid anion
annotated property: has_related_synonym
annotated target: amino-acid anions
database_cross_reference: ChEBI

organic hydride
type: Class
subclass of: hydrides
has OBO namespace: chebi_ontology
has_related_synonym: organic hydrides
id: CHEBI:37175
in_subset: 3 STAR

Axiom
annotated source: organic hydride
annotated property: has_related_synonym
annotated target: organic hydrides
database_cross_reference: ChEBI

mononuclear parent hydride
type: Class
subclass of: hydrides
has_exact_synonym: mononuclear parent hydrides
has OBO namespace: chebi_ontology
has_related_synonym: mononuclear hydride
has_related_synonym: mononuclear hydrides
id: CHEBI:37176
in_subset: 3 STAR

Axiom
annotated source: mononuclear parent hydride
annotated property: has_exact_synonym
annotated target: mononuclear parent hydrides
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: mononuclear parent hydride
annotated property: has_related_synonym
annotated target: mononuclear hydride
database_cross_reference: ChEBI

Axiom
annotated source: mononuclear parent hydride
annotated property: has_related_synonym
annotated target: mononuclear hydrides
database_cross_reference: IUPAC

mucopolysaccharide
type: Class
subclass of: glycosaminoglycan
definition: Any of the group of polysaccharides composed of alternating units from uronic acids and glycosamines, and commonly partially esterified with sulfuric acid.
has alternative id: CHEBI:25425
has alternative id: CHEBI:7011
database_cross_reference: KEGG:C05114
has_exact_synonym: Mucopolysaccharide
has_exact_synonym: mucopolysaccharides
has OBO namespace: chebi_ontology
has_related_synonym: Mucopolysaccharid
has_related_synonym: Mukopolysaccharid
has_related_synonym: mucopolisacarido
has_related_synonym: mucopolisacaridos
id: CHEBI:37395
in_subset: 3 STAR

Axiom
annotated source: mucopolysaccharide
annotated property: has_exact_synonym
annotated target: Mucopolysaccharide
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: mucopolysaccharide
annotated property: has_exact_synonym
annotated target: mucopolysaccharides
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: mucopolysaccharide
annotated property: has_related_synonym
annotated target: Mucopolysaccharid
database_cross_reference: ChEBI

Axiom
annotated source: mucopolysaccharide
annotated property: has_related_synonym
annotated target: Mukopolysaccharid
database_cross_reference: ChEBI

Axiom
annotated source: mucopolysaccharide
annotated property: has_related_synonym
annotated target: mucopolisacarido
database_cross_reference: ChEBI

Axiom
annotated source: mucopolysaccharide
annotated property: has_related_synonym
annotated target: mucopolisacaridos
database_cross_reference: IUPAC

acid
type: Class
subclass of: chemical role
definition: An acid is a molecular entity capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid).
has alternative id: CHEBI:13800
has alternative id: CHEBI:13801
has alternative id: CHEBI:22209
has alternative id: CHEBI:2426
database_cross_reference: KEGG:C00174
has_exact_synonym: Acid
has_exact_synonym: acid
has OBO namespace: chebi_ontology
has_related_synonym: Saeure
has_related_synonym: Saeuren
has_related_synonym: acide
has_related_synonym: acido
has_related_synonym: acids
id: CHEBI:37527
in_subset: 3 STAR

Axiom
annotated source: acid
annotated property: has_exact_synonym
annotated target: Acid
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: acid
annotated property: has_exact_synonym
annotated target: acid
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: acid
annotated property: has_related_synonym
annotated target: Saeure
database_cross_reference: ChEBI

Axiom
annotated source: acid
annotated property: has_related_synonym
annotated target: Saeuren
database_cross_reference: ChEBI

Axiom
annotated source: acid
annotated property: has_related_synonym
annotated target: acide
database_cross_reference: IUPAC

Axiom
annotated source: acid
annotated property: has_related_synonym
annotated target: acido
database_cross_reference: ChEBI

Axiom
annotated source: acid
annotated property: has_related_synonym
annotated target: acids
database_cross_reference: ChEBI

heteroatomic molecular entity
type: Class
subclass of: polyatomic entity
definition: A molecular entity consisting of two or more chemical elements.
has OBO namespace: chebi_ontology
has_related_synonym: chemical compound
has_related_synonym: heteroatomic molecular entities
id: CHEBI:37577
in_subset: 3 STAR

Axiom
annotated source: heteroatomic molecular entity
annotated property: has_related_synonym
annotated target: chemical compound
database_cross_reference: ChEBI

Axiom
annotated source: heteroatomic molecular entity
annotated property: has_related_synonym
annotated target: heteroatomic molecular entities
database_cross_reference: ChEBI

carboxamide
type: Class
subclass of: primary amide
subclass of: organonitrogen compound
subclass of: organooxygen compound
subclass of: Restriction
  on property: has part
  some values from: carbamoyl group
definition: An amide of a carboxylic acid, having the structure RC(=O)NR2. The term is used as a suffix in systematic name formation to denote the -C(=O)NH2 group including its carbon atom.
charge: 0
formula: CNOR3
mass: 42.01680
monoisotopicmass: 41.99799
smiles: [*]C(=O)N([*])[*]
has alternative id: CHEBI:35354
has alternative id: CHEBI:35355
has_exact_synonym: carboxamides
has OBO namespace: chebi_ontology
has_related_synonym: carboxamides
has_related_synonym: primary carboxamide
id: CHEBI:37622
in_subset: 3 STAR

Axiom
annotated source: carboxamide
annotated property: has_exact_synonym
annotated target: carboxamides
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carboxamide
annotated property: has_related_synonym
annotated target: carboxamides
database_cross_reference: ChEBI

Axiom
annotated source: carboxamide
annotated property: has_related_synonym
annotated target: primary carboxamide
database_cross_reference: ChEBI

sulfuric acid derivative
type: Class
subclass of: sulfur oxoacid derivative
subclass of: Restriction
  on property: has functional parent
  some values from: sulfuric acid
has_exact_synonym: sulfuric acid derivative
has OBO namespace: chebi_ontology
has_related_synonym: sulfuric acid derivatives
id: CHEBI:37826
in_subset: 3 STAR

Axiom
annotated source: sulfuric acid derivative
annotated property: has_exact_synonym
annotated target: sulfuric acid derivative
database_cross_reference: ChEBI

Axiom
annotated source: sulfuric acid derivative
annotated property: has_related_synonym
annotated target: sulfuric acid derivatives
database_cross_reference: ChEBI

carboacyl group
type: Class
subclass of: acyl group
subclass of: Restriction
  on property: is substituent group from
  some values from: carboxylic acid
definition: A carboacyl group is a group formed by loss of at least one OH from the carboxy group of a carboxylic acid.
has_exact_synonym: carboacyl groups
has_exact_synonym: carboxylic acyl group
has OBO namespace: chebi_ontology
has_related_synonym: carboxylic acyl groups
id: CHEBI:37838
in_subset: 3 STAR

Axiom
annotated source: carboacyl group
annotated property: has_exact_synonym
annotated target: carboacyl groups
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carboacyl group
annotated property: has_exact_synonym
annotated target: carboxylic acyl group
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carboacyl group
annotated property: has_related_synonym
annotated target: carboxylic acyl groups
database_cross_reference: IUPAC

polypyrrole
type: Class
subclass of: organonitrogen heterocyclic compound
definition: A compound composed of two or more pyrrole units.
database_cross_reference: Beilstein:8538310
has OBO namespace: chebi_ontology
has_related_synonym: PPys
has_related_synonym: poly(pyrrole)s
has_related_synonym: polypyrroles
id: CHEBI:38077
in_subset: 3 STAR

Axiom
annotated source: polypyrrole
annotated property: database_cross_reference
annotated target: Beilstein:8538310
source: Beilstein

Axiom
annotated source: polypyrrole
annotated property: has_related_synonym
annotated target: PPys
database_cross_reference: ChEBI

Axiom
annotated source: polypyrrole
annotated property: has_related_synonym
annotated target: poly(pyrrole)s
database_cross_reference: ChEBI

Axiom
annotated source: polypyrrole
annotated property: has_related_synonym
annotated target: polypyrroles
database_cross_reference: ChEBI

organonitrogen heterocyclic compound
type: Class
subclass of: organic heterocyclic compound
subclass of: organonitrogen compound
definition: Any organonitrogen compound containing a cyclic component with nitrogen and at least one other element as ring member atoms.
has OBO namespace: chebi_ontology
has_related_synonym: heterocyclic organonitrogen compounds
has_related_synonym: organonitrogen heterocyclic compounds
id: CHEBI:38101
in_subset: 3 STAR

Axiom
annotated source: organonitrogen heterocyclic compound
annotated property: has_related_synonym
annotated target: heterocyclic organonitrogen compounds
database_cross_reference: ChEBI

Axiom
annotated source: organonitrogen heterocyclic compound
annotated property: has_related_synonym
annotated target: organonitrogen heterocyclic compounds
database_cross_reference: ChEBI

organic heteropolycyclic compound
type: Class
subclass of: organic heterocyclic compound
subclass of: heteropolycyclic compound
has alternative id: CHEBI:25429
has alternative id: CHEBI:38075
has OBO namespace: chebi_ontology
has_related_synonym: organic heteropolycyclic compounds
id: CHEBI:38166
in_subset: 3 STAR

Axiom
annotated source: organic heteropolycyclic compound
annotated property: has_related_synonym
annotated target: organic heteropolycyclic compounds
database_cross_reference: ChEBI

polycyclic heteroarene
type: Class
subclass of: heteroarene
has OBO namespace: chebi_ontology
has_related_synonym: polycyclic heteroarenes
id: CHEBI:38180
in_subset: 3 STAR

Axiom
annotated source: polycyclic heteroarene
annotated property: has_related_synonym
annotated target: polycyclic heteroarenes
database_cross_reference: ChEBI

chlorophyllide
type: Class
subclass of: chlorophyll
subclass of: Restriction
  on property: is conjugate acid of
  some values from: chlorophyllide(2-)
definition: Chlorophylls lacking the terpenoid side chain such as phytyl or farnesyl.
has alternative id: CHEBI:13975
has alternative id: CHEBI:23160
has alternative id: CHEBI:3634
has OBO namespace: chebi_ontology
has_related_synonym: Chlorophyllid
has_related_synonym: chlorophyllides
id: CHEBI:38206
in_subset: 3 STAR

Axiom
annotated source: chlorophyllide
annotated property: has_related_synonym
annotated target: Chlorophyllid
database_cross_reference: ChEBI

Axiom
annotated source: chlorophyllide
annotated property: has_related_synonym
annotated target: chlorophyllides
database_cross_reference: ChEBI

hydrocarbyl anion
type: Class
subclass of: organic anion
has OBO namespace: chebi_ontology
id: CHEBI:38222
in_subset: 1 STAR

magnesium tetrapyrrole
type: Class
subclass of: metallotetrapyrrole
subclass of: magnesium coordination entity
has OBO namespace: chebi_ontology
has_related_synonym: magnesium tetrapyrroles
id: CHEBI:38251
in_subset: 3 STAR

Axiom
annotated source: magnesium tetrapyrrole
annotated property: has_related_synonym
annotated target: magnesium tetrapyrroles
database_cross_reference: ChEBI

electron-transport chain inhibitor
type: Class
subclass of: pathway inhibitor
has OBO namespace: chebi_ontology
id: CHEBI:38496
in_subset: 1 STAR

respiratory-chain inhibitor
type: Class
subclass of: electron-transport chain inhibitor
has OBO namespace: chebi_ontology
id: CHEBI:38497
in_subset: 1 STAR

EC 1.9.3.1 (cytochrome c oxidase) inhibitor
type: Class
subclass of: mitochondrial respiratory-chain inhibitor
subclass of: EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor
definition: An EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor that interferes with the action of cytochrome c oxidase (EC 1.9.3.1).
has alternative id: CHEBI:38501
has alternative id: CHEBI:62966
database_cross_reference: PMID:12969439
database_cross_reference: Wikipedia:Cytochrome_c_oxidase
has OBO namespace: chebi_ontology
has_related_synonym: CcO inhibitor
has_related_synonym: EC 1.9.3.1 (cytochrome c oxidase) inhibitors
has_related_synonym: EC 1.9.3.1 inhibitor
has_related_synonym: EC 1.9.3.1 inhibitors
has_related_synonym: NADH cytochrome c oxidase inhibitor
has_related_synonym: NADH cytochrome c oxidase inhibitors
has_related_synonym: Warburg's respiratory enzyme inhibitor
has_related_synonym: Warburg's respiratory enzyme inhibitors
has_related_synonym: complex IV (mitochondrial electron transport) inhibitor
has_related_synonym: complex IV (mitochondrial electron transport) inhibitors
has_related_synonym: cytochrome a3 inhibitor
has_related_synonym: cytochrome a3 inhibitors
has_related_synonym: cytochrome aa3 inhibitor
has_related_synonym: cytochrome aa3 inhibitors
has_related_synonym: cytochrome c oxidase (EC 1.9.3.1) inhibitor
has_related_synonym: cytochrome c oxidase (EC 1.9.3.1) inhibitors
has_related_synonym: cytochrome c oxidase inhibitor
has_related_synonym: cytochrome c oxidase inhibitors
has_related_synonym: cytochrome oxidase inhibitor
has_related_synonym: cytochrome oxidase inhibitors
has_related_synonym: cytochrome-c oxidase inhibitor
has_related_synonym: cytochrome-c oxidase inhibitors
has_related_synonym: ferrocytochrome c oxidase inhibitor
has_related_synonym: ferrocytochrome c oxidase inhibitors
has_related_synonym: ferrocytochrome-c:oxygen oxidoreductase inhibitor
has_related_synonym: ferrocytochrome-c:oxygen oxidoreductase inhibitors
has_related_synonym: indophenol oxidase inhibitor
has_related_synonym: indophenol oxidase inhibitors
has_related_synonym: indophenolase inhibitor
has_related_synonym: indophenolase inhibitors
has_related_synonym: mitochondrial complex IV inhibitor
has_related_synonym: mitochondrial complex IV inhibitors
has_related_synonym: mitochondrial cytochrome-c oxidase inhibitors
id: CHEBI:38500
in_subset: 3 STAR

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: database_cross_reference
annotated target: PMID:12969439
source: Europe PMC

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: CcO inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.9.3.1 (cytochrome c oxidase) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.9.3.1 inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.9.3.1 inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: NADH cytochrome c oxidase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: NADH cytochrome c oxidase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: Warburg's respiratory enzyme inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: Warburg's respiratory enzyme inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: complex IV (mitochondrial electron transport) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: complex IV (mitochondrial electron transport) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: cytochrome a3 inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: cytochrome a3 inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: cytochrome aa3 inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: cytochrome aa3 inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: cytochrome c oxidase (EC 1.9.3.1) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: cytochrome c oxidase (EC 1.9.3.1) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: cytochrome c oxidase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: cytochrome c oxidase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: cytochrome oxidase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: cytochrome oxidase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: cytochrome-c oxidase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: cytochrome-c oxidase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: ferrocytochrome c oxidase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: ferrocytochrome c oxidase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: ferrocytochrome-c:oxygen oxidoreductase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: ferrocytochrome-c:oxygen oxidoreductase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: indophenol oxidase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: indophenol oxidase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: indophenolase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: indophenolase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: mitochondrial complex IV inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: mitochondrial complex IV inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.1 (cytochrome c oxidase) inhibitor
annotated property: has_related_synonym
annotated target: mitochondrial cytochrome-c oxidase inhibitors
database_cross_reference: ChEBI

aminoalkylindole
type: Class
subclass of: indoles
has alternative id: CHEBI:22503
has alternative id: CHEBI:24792
has OBO namespace: chebi_ontology
has_related_synonym: aminoalkylindoles
id: CHEBI:38631
in_subset: 3 STAR

Axiom
annotated source: aminoalkylindole
annotated property: has_related_synonym
annotated target: aminoalkylindoles
database_cross_reference: ChEBI

anaesthetic
type: Class
subclass of: drug
definition: Substance which produces loss of feeling or sensation.
has_exact_synonym: anaesthetic
has OBO namespace: chebi_ontology
has_related_synonym: Anaesthetika
has_related_synonym: Anaesthetikum
has_related_synonym: anaesthetics
has_related_synonym: anesthetic agent
has_related_synonym: anesthetic drug
has_related_synonym: anesthetics
id: CHEBI:38867
in_subset: 3 STAR

Axiom
annotated source: anaesthetic
annotated property: has_exact_synonym
annotated target: anaesthetic
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: anaesthetic
annotated property: has_related_synonym
annotated target: Anaesthetika
database_cross_reference: ChEBI

Axiom
annotated source: anaesthetic
annotated property: has_related_synonym
annotated target: Anaesthetikum
database_cross_reference: ChEBI

Axiom
annotated source: anaesthetic
annotated property: has_related_synonym
annotated target: anaesthetics
database_cross_reference: ChEBI

Axiom
annotated source: anaesthetic
annotated property: has_related_synonym
annotated target: anesthetic agent
database_cross_reference: ChEBI

Axiom
annotated source: anaesthetic
annotated property: has_related_synonym
annotated target: anesthetic drug
database_cross_reference: ChEBI

Axiom
annotated source: anaesthetic
annotated property: has_related_synonym
annotated target: anesthetics
database_cross_reference: ChEBI

indole alkaloid
type: Class
subclass of: alkaloid
subclass of: Restriction
  on property: has part
  some values from: indole skeleton
definition: An alkaloid containing an indole skeleton.
has alternative id: CHEBI:24795
has alternative id: CHEBI:5901
database_cross_reference: KEGG:C06073
database_cross_reference: Wikipedia:Indole_alkaloid
has_exact_synonym: Indole alkaloid
has OBO namespace: chebi_ontology
has_related_synonym: indole alkaloids
id: CHEBI:38958
in_subset: 3 STAR

Axiom
annotated source: indole alkaloid
annotated property: has_exact_synonym
annotated target: Indole alkaloid
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: indole alkaloid
annotated property: has_related_synonym
annotated target: indole alkaloids
database_cross_reference: ChEBI

Bronsted acid
type: Class
subclass of: donor
subclass of: acid
definition: A molecular entity capable of donating a hydron to an acceptor (Bronsted base).
has_exact_synonym: Bronsted acid
has OBO namespace: chebi_ontology
has_related_synonym: Bronsted-Saeure
has_related_synonym: acide de Bronsted
has_related_synonym: donneur d'hydron
has_related_synonym: hydron donor
id: CHEBI:39141
in_subset: 3 STAR

Axiom
annotated source: Bronsted acid
annotated property: has_exact_synonym
annotated target: Bronsted acid
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: Bronsted acid
annotated property: has_related_synonym
annotated target: Bronsted-Saeure
database_cross_reference: ChEBI

Axiom
annotated source: Bronsted acid
annotated property: has_related_synonym
annotated target: acide de Bronsted
database_cross_reference: IUPAC

Axiom
annotated source: Bronsted acid
annotated property: has_related_synonym
annotated target: donneur d'hydron
database_cross_reference: IUPAC

Axiom
annotated source: Bronsted acid
annotated property: has_related_synonym
annotated target: hydron donor
database_cross_reference: IUPAC

Bronsted base
type: Class
subclass of: acceptor
subclass of: base
definition: A molecular entity capable of accepting a hydron from a donor (Bronsted acid).
has_exact_synonym: Bronsted base
has OBO namespace: chebi_ontology
has_related_synonym: Bronsted-Base
has_related_synonym: accepteur d'hydron
has_related_synonym: base de Bronsted
has_related_synonym: hydron acceptor
id: CHEBI:39142
in_subset: 3 STAR

Axiom
annotated source: Bronsted base
annotated property: has_exact_synonym
annotated target: Bronsted base
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: Bronsted base
annotated property: has_related_synonym
annotated target: Bronsted-Base
database_cross_reference: ChEBI

Axiom
annotated source: Bronsted base
annotated property: has_related_synonym
annotated target: accepteur d'hydron
database_cross_reference: IUPAC

Axiom
annotated source: Bronsted base
annotated property: has_related_synonym
annotated target: base de Bronsted
database_cross_reference: IUPAC

Axiom
annotated source: Bronsted base
annotated property: has_related_synonym
annotated target: hydron acceptor
database_cross_reference: IUPAC

Lewis base
type: Class
subclass of: donor
subclass of: base
definition: A molecular entity able to provide a pair of electrons and thus capable of forming a covalent bond with an electron-pair acceptor (Lewis acid), thereby producing a Lewis adduct.
has_exact_synonym: Lewis base
has OBO namespace: chebi_ontology
has_related_synonym: Lewis-Base
has_related_synonym: base de Lewis
has_related_synonym: donneur d'une paire d'electrons
has_related_synonym: electron donor
id: CHEBI:39144
in_subset: 3 STAR

Axiom
annotated source: Lewis base
annotated property: has_exact_synonym
annotated target: Lewis base
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: Lewis base
annotated property: has_related_synonym
annotated target: Lewis-Base
database_cross_reference: ChEBI

Axiom
annotated source: Lewis base
annotated property: has_related_synonym
annotated target: base de Lewis
database_cross_reference: IUPAC

Axiom
annotated source: Lewis base
annotated property: has_related_synonym
annotated target: donneur d'une paire d'electrons
database_cross_reference: ChEBI

Axiom
annotated source: Lewis base
annotated property: has_related_synonym
annotated target: electron donor
database_cross_reference: ChEBI

dihydrogenphosphate
type: Class
subclass of: phosphate ion
subclass of: monovalent inorganic anion
subclass of: Restriction
  on property: is conjugate acid of
  some values from: hydrogenphosphate
definition: A monovalent inorganic anion that consists of phosphoric acid in which one of the three OH groups has been deprotonated.
charge: -1
formula: H2O4P
inchi: InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-1
inchikey: NBIIXXVUZAFLBC-UHFFFAOYSA-M
mass: 96.98724
monoisotopicmass: 96.96962
smiles: [H]OP([O-])(=O)O[H]
has alternative id: CHEBI:29137
has alternative id: CHEBI:39739
database_cross_reference: DrugBank:DB02831
database_cross_reference: Gmelin:1999
database_cross_reference: PDBeChem:2HP
has_exact_synonym: dihydrogen(tetraoxidophosphate)(1-)
has_exact_synonym: dihydrogenphosphate
has_exact_synonym: dihydrogentetraoxophosphate(1-)
has_exact_synonym: dihydrogentetraoxophosphate(V)
has_exact_synonym: dihydroxidodioxidophosphate(1-)
has OBO namespace: chebi_ontology
has_related_synonym: DIHYDROGENPHOSPHATE ION
has_related_synonym: H2PO4(-)
has_related_synonym: [PO2(OH)2](-)
id: CHEBI:39745
in_subset: 3 STAR

Axiom
annotated source: dihydrogenphosphate
annotated property: database_cross_reference
annotated target: Gmelin:1999
source: Gmelin

Axiom
annotated source: dihydrogenphosphate
annotated property: has_exact_synonym
annotated target: dihydrogen(tetraoxidophosphate)(1-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: dihydrogenphosphate
annotated property: has_exact_synonym
annotated target: dihydrogenphosphate
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: dihydrogenphosphate
annotated property: has_exact_synonym
annotated target: dihydrogentetraoxophosphate(1-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: dihydrogenphosphate
annotated property: has_exact_synonym
annotated target: dihydrogentetraoxophosphate(V)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: dihydrogenphosphate
annotated property: has_exact_synonym
annotated target: dihydroxidodioxidophosphate(1-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: dihydrogenphosphate
annotated property: has_related_synonym
annotated target: DIHYDROGENPHOSPHATE ION
database_cross_reference: PDBeChem

Axiom
annotated source: dihydrogenphosphate
annotated property: has_related_synonym
annotated target: H2PO4(-)
database_cross_reference: IUPAC

Axiom
annotated source: dihydrogenphosphate
annotated property: has_related_synonym
annotated target: [PO2(OH)2](-)
database_cross_reference: IUPAC

hydroxy group
type: Class
subclass of: inorganic group
charge: 0
formula: HO
mass: 17.00734
monoisotopicmass: 17.00274
smiles: *O[H]
has alternative id: CHEBI:24706
has alternative id: CHEBI:43171
database_cross_reference: PDBeChem:OH
has_exact_synonym: HYDROXY GROUP
has_exact_synonym: hydroxy
has_exact_synonym: hydroxy group
has OBO namespace: chebi_ontology
has_related_synonym: -OH
has_related_synonym: hydroxyl
has_related_synonym: hydroxyl group
id: CHEBI:43176
in_subset: 3 STAR

Axiom
annotated source: hydroxy group
annotated property: has_exact_synonym
annotated target: HYDROXY GROUP
database_cross_reference: PDBeChem

Axiom
annotated source: hydroxy group
annotated property: has_exact_synonym
annotated target: hydroxy
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydroxy group
annotated property: has_exact_synonym
annotated target: hydroxy group
database_cross_reference: UniProt

Axiom
annotated source: hydroxy group
annotated property: has_related_synonym
annotated target: -OH
database_cross_reference: IUPAC

Axiom
annotated source: hydroxy group
annotated property: has_related_synonym
annotated target: hydroxyl
database_cross_reference: ChEBI

Axiom
annotated source: hydroxy group
annotated property: has_related_synonym
annotated target: hydroxyl group
database_cross_reference: ChEBI

hydrogenphosphate
type: Class
subclass of: phosphate ion
subclass of: divalent inorganic anion
subclass of: Restriction
  on property: has role
  some values from: cofactor
subclass of: Restriction
  on property: has role
  some values from: Saccharomyces cerevisiae metabolite
subclass of: Restriction
  on property: is conjugate acid of
  some values from: phosphate(3-)
subclass of: Restriction
  on property: is conjugate base of
  some values from: dihydrogenphosphate
definition: A phosphate ion that is the conjugate base of dihydrogenphosphate.
charge: -2
formula: HO4P
inchi: InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-2
inchikey: NBIIXXVUZAFLBC-UHFFFAOYSA-L
mass: 95.97930
monoisotopicmass: 95.96234
smiles: OP([O-])([O-])=O
has alternative id: CHEBI:29139
has alternative id: CHEBI:43470
database_cross_reference: Gmelin:1998
database_cross_reference: MolBase:1628
database_cross_reference: PDBeChem:PI
database_cross_reference: PDBeChem:PO4
has_exact_synonym: hydrogen(tetraoxidophosphate)(2-)
has_exact_synonym: hydrogenphosphate
has_exact_synonym: hydrogentetraoxophosphate(2-)
has_exact_synonym: hydrogentetraoxophosphate(V)
has_exact_synonym: hydroxidotrioxidophosphate(2-)
has OBO namespace: chebi_ontology
has_related_synonym: HPO4(2-)
has_related_synonym: HYDROGENPHOSPHATE ION
has_related_synonym: INORGANIC PHOSPHATE GROUP
has_related_synonym: [P(OH)O3](2-)
has_related_synonym: [PO3(OH)](2-)
has_related_synonym: hydrogen phosphate
has_related_synonym: phosphate
id: CHEBI:43474
in_subset: 3 STAR

Axiom
annotated source: hydrogenphosphate
annotated property: database_cross_reference
annotated target: Gmelin:1998
source: Gmelin

Axiom
annotated source: hydrogenphosphate
annotated property: has_exact_synonym
annotated target: hydrogen(tetraoxidophosphate)(2-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogenphosphate
annotated property: has_exact_synonym
annotated target: hydrogenphosphate
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogenphosphate
annotated property: has_exact_synonym
annotated target: hydrogentetraoxophosphate(2-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogenphosphate
annotated property: has_exact_synonym
annotated target: hydrogentetraoxophosphate(V)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogenphosphate
annotated property: has_exact_synonym
annotated target: hydroxidotrioxidophosphate(2-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogenphosphate
annotated property: has_related_synonym
annotated target: HPO4(2-)
database_cross_reference: IUPAC

Axiom
annotated source: hydrogenphosphate
annotated property: has_related_synonym
annotated target: HYDROGENPHOSPHATE ION
database_cross_reference: PDBeChem

Axiom
annotated source: hydrogenphosphate
annotated property: has_related_synonym
annotated target: INORGANIC PHOSPHATE GROUP
database_cross_reference: PDBeChem

Axiom
annotated source: hydrogenphosphate
annotated property: has_related_synonym
annotated target: [P(OH)O3](2-)
database_cross_reference: MolBase

Axiom
annotated source: hydrogenphosphate
annotated property: has_related_synonym
annotated target: [PO3(OH)](2-)
database_cross_reference: IUPAC

Axiom
annotated source: hydrogenphosphate
annotated property: has_related_synonym
annotated target: hydrogen phosphate
database_cross_reference: ChEBI

Axiom
annotated source: hydrogenphosphate
annotated property: has_related_synonym
annotated target: phosphate
database_cross_reference: UniProt

hydrogensulfate
type: Class
subclass of: sulfur oxoanion
subclass of: Restriction
  on property: is conjugate acid of
  some values from: sulfate
subclass of: Restriction
  on property: is conjugate base of
  some values from: sulfuric acid
charge: -1
formula: HO4S
inchi: InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-1
inchikey: QAOWNCQODCNURD-UHFFFAOYSA-M
mass: 97.07154
monoisotopicmass: 96.96010
smiles: [H]OS([O-])(=O)=O
has alternative id: CHEBI:29199
has alternative id: CHEBI:45693
database_cross_reference: Gmelin:2121
has_exact_synonym: hydrogen(tetraoxidosulfate)(1-)
has_exact_synonym: hydrogensulfate
has_exact_synonym: hydrogensulfate(1-)
has_exact_synonym: hydrogentetraoxosulfate(1-)
has_exact_synonym: hydrogentetraoxosulfate(VI)
has_exact_synonym: hydroxidotrioxidosulfate(1-)
has OBO namespace: chebi_ontology
has_related_synonym: HSO4(-)
has_related_synonym: HYDROGEN SULFATE
has_related_synonym: [SO3(OH)](-)
id: CHEBI:45696
in_subset: 3 STAR

Axiom
annotated source: hydrogensulfate
annotated property: database_cross_reference
annotated target: Gmelin:2121
source: Gmelin

Axiom
annotated source: hydrogensulfate
annotated property: has_exact_synonym
annotated target: hydrogen(tetraoxidosulfate)(1-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogensulfate
annotated property: has_exact_synonym
annotated target: hydrogensulfate
database_cross_reference: IUPAC

Axiom
annotated source: hydrogensulfate
annotated property: has_exact_synonym
annotated target: hydrogensulfate(1-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogensulfate
annotated property: has_exact_synonym
annotated target: hydrogentetraoxosulfate(1-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogensulfate
annotated property: has_exact_synonym
annotated target: hydrogentetraoxosulfate(VI)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogensulfate
annotated property: has_exact_synonym
annotated target: hydroxidotrioxidosulfate(1-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogensulfate
annotated property: has_related_synonym
annotated target: HSO4(-)
database_cross_reference: IUPAC

Axiom
annotated source: hydrogensulfate
annotated property: has_related_synonym
annotated target: HYDROGEN SULFATE
database_cross_reference: PDBeChem

Axiom
annotated source: hydrogensulfate
annotated property: has_related_synonym
annotated target: [SO3(OH)](-)
database_cross_reference: IUPAC

oxo group
type: Class
subclass of: inorganic group
charge: 0
formula: O
mass: 15.99940
monoisotopicmass: 15.99491
smiles: O=*
has alternative id: CHEBI:29353
has alternative id: CHEBI:44607
database_cross_reference: PDBeChem:O
has_exact_synonym: OXO GROUP
has_exact_synonym: oxo
has OBO namespace: chebi_ontology
has_related_synonym: =O
id: CHEBI:46629
in_subset: 3 STAR

Axiom
annotated source: oxo group
annotated property: has_exact_synonym
annotated target: OXO GROUP
database_cross_reference: PDBeChem

Axiom
annotated source: oxo group
annotated property: has_exact_synonym
annotated target: oxo
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: oxo group
annotated property: has_related_synonym
annotated target: =O
database_cross_reference: IUPAC

solvent
type: Class
subclass of: application
subclass of: chemical role
definition: A liquid that can dissolve other substances (solutes) without any change in their chemical composition.
database_cross_reference: Wikipedia:Solvent
has OBO namespace: chebi_ontology
has_related_synonym: Loesungsmittel
has_related_synonym: solvant
has_related_synonym: solvents
id: CHEBI:46787
in_subset: 3 STAR

Axiom
annotated source: solvent
annotated property: has_related_synonym
annotated target: Loesungsmittel
database_cross_reference: ChEBI

Axiom
annotated source: solvent
annotated property: has_related_synonym
annotated target: solvant
database_cross_reference: ChEBI

Axiom
annotated source: solvent
annotated property: has_related_synonym
annotated target: solvents
database_cross_reference: ChEBI

carboxy group
type: Class
subclass of: organyl group
charge: 0
formula: CHO2
mass: 45.01744
monoisotopicmass: 44.99765
smiles: *C(=O)O
has alternative id: CHEBI:23025
has alternative id: CHEBI:41420
database_cross_reference: PDBeChem:FMT
has_exact_synonym: CARBOXY GROUP
has_exact_synonym: carboxy
has OBO namespace: chebi_ontology
has_related_synonym: -C(O)OH
has_related_synonym: -CO2H
has_related_synonym: -COOH
has_related_synonym: carboxyl group
id: CHEBI:46883
in_subset: 3 STAR

Axiom
annotated source: carboxy group
annotated property: has_exact_synonym
annotated target: CARBOXY GROUP
database_cross_reference: PDBeChem

Axiom
annotated source: carboxy group
annotated property: has_exact_synonym
annotated target: carboxy
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carboxy group
annotated property: has_related_synonym
annotated target: -C(O)OH
database_cross_reference: IUPAC

Axiom
annotated source: carboxy group
annotated property: has_related_synonym
annotated target: -CO2H
database_cross_reference: ChEBI

Axiom
annotated source: carboxy group
annotated property: has_related_synonym
annotated target: -COOH
database_cross_reference: IUPAC

Axiom
annotated source: carboxy group
annotated property: has_related_synonym
annotated target: carboxyl group
database_cross_reference: ChEBI

indicator
type: Class
subclass of: application
definition: Anything used in a scientific experiment to indicate the presence of a substance or quality, change in a body, etc.
has OBO namespace: chebi_ontology
has_related_synonym: Indikator
id: CHEBI:47867
in_subset: 3 STAR

Axiom
annotated source: indicator
annotated property: has_related_synonym
annotated target: Indikator
database_cross_reference: ChEBI

cyclic polypyrrole
type: Class
subclass of: polypyrrole
has_exact_synonym: macrocyclic polypyrroles
has OBO namespace: chebi_ontology
has_related_synonym: cyclic polypyrroles
has_related_synonym: polypyrrole macrocycles
id: CHEBI:47882
in_subset: 3 STAR

Axiom
annotated source: cyclic polypyrrole
annotated property: has_exact_synonym
annotated target: macrocyclic polypyrroles
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: cyclic polypyrrole
annotated property: has_related_synonym
annotated target: cyclic polypyrroles
database_cross_reference: ChEBI

Axiom
annotated source: cyclic polypyrrole
annotated property: has_related_synonym
annotated target: polypyrrole macrocycles
database_cross_reference: ChEBI

nitric acid
type: Class
subclass of: nitrogen oxoacid
subclass of: Restriction
  on property: has role
  some values from: reagent
subclass of: Restriction
  on property: has role
  some values from: protic solvent
subclass of: Restriction
  on property: is conjugate acid of
  some values from: nitrate
definition: A nitrogen oxoacid of formula HNO3 in which the nitrogen atom is bonded to a hydroxy group and by equivalent bonds to the remaining two oxygen atoms.
charge: 0
formula: HNO3
inchi: InChI=1S/HNO3/c2-1(3)4/h(H,2,3,4)
inchikey: GRYLNZFGIOXLOG-UHFFFAOYSA-N
mass: 63.01280
monoisotopicmass: 62.99564
smiles: O[N+]([O-])=O
has alternative id: CHEBI:25545
has alternative id: CHEBI:7580
database_cross_reference: CAS:7697-37-2
database_cross_reference: Gmelin:1576
database_cross_reference: KEGG:C00244
database_cross_reference: KEGG:D02313
database_cross_reference: MetaCyc:CPD-15028
database_cross_reference: PMID:22285512
database_cross_reference: PMID:23402861
database_cross_reference: Reaxys:3587310
database_cross_reference: Wikipedia:Nitric_acid
has_exact_synonym: Nitric acid
has_exact_synonym: hydrogen trioxonitrate(1-)
has_exact_synonym: hydroxidodioxidonitrogen
has_exact_synonym: trioxonitric acid
has OBO namespace: chebi_ontology
has_related_synonym: HNO3
has_related_synonym: HONO2
has_related_synonym: Salpetersaeure
has_related_synonym: [NO2(OH)]
has_related_synonym: acide azotique
has_related_synonym: acide nitrique
has_related_synonym: azotic acid
has_related_synonym: hydrogen nitrate
id: CHEBI:48107
in_subset: 3 STAR

Axiom
annotated source: nitric acid
annotated property: database_cross_reference
annotated target: CAS:7697-37-2
source: ChemIDplus

Axiom
annotated source: nitric acid
annotated property: database_cross_reference
annotated target: CAS:7697-37-2
source: NIST Chemistry WebBook

Axiom
annotated source: nitric acid
annotated property: database_cross_reference
annotated target: Gmelin:1576
source: Gmelin

Axiom
annotated source: nitric acid
annotated property: database_cross_reference
annotated target: PMID:22285512
source: Europe PMC

Axiom
annotated source: nitric acid
annotated property: database_cross_reference
annotated target: PMID:23402861
source: Europe PMC

Axiom
annotated source: nitric acid
annotated property: database_cross_reference
annotated target: Reaxys:3587310
source: Reaxys

Axiom
annotated source: nitric acid
annotated property: has_exact_synonym
annotated target: Nitric acid
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: nitric acid
annotated property: has_exact_synonym
annotated target: hydrogen trioxonitrate(1-)
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nitric acid
annotated property: has_exact_synonym
annotated target: hydroxidodioxidonitrogen
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nitric acid
annotated property: has_exact_synonym
annotated target: trioxonitric acid
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nitric acid
annotated property: has_related_synonym
annotated target: HNO3
database_cross_reference: IUPAC

Axiom
annotated source: nitric acid
annotated property: has_related_synonym
annotated target: HONO2
database_cross_reference: NIST_Chemistry_WebBook

Axiom
annotated source: nitric acid
annotated property: has_related_synonym
annotated target: Salpetersaeure
database_cross_reference: ChemIDplus

Axiom
annotated source: nitric acid
annotated property: has_related_synonym
annotated target: [NO2(OH)]
database_cross_reference: IUPAC

Axiom
annotated source: nitric acid
annotated property: has_related_synonym
annotated target: acide azotique
database_cross_reference: ChEBI

Axiom
annotated source: nitric acid
annotated property: has_related_synonym
annotated target: acide nitrique
database_cross_reference: ChemIDplus

Axiom
annotated source: nitric acid
annotated property: has_related_synonym
annotated target: azotic acid
database_cross_reference: ChemIDplus

Axiom
annotated source: nitric acid
annotated property: has_related_synonym
annotated target: hydrogen nitrate
database_cross_reference: NIST_Chemistry_WebBook

sulfur oxide
type: Class
subclass of: inorganic oxide
subclass of: sulfur molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: Schwefeloxide
has_related_synonym: oxides of sulfur
has_related_synonym: sulfur oxides
id: CHEBI:48154
in_subset: 3 STAR

Axiom
annotated source: sulfur oxide
annotated property: has_related_synonym
annotated target: Schwefeloxide
database_cross_reference: ChEBI

Axiom
annotated source: sulfur oxide
annotated property: has_related_synonym
annotated target: oxides of sulfur
database_cross_reference: ChEBI

Axiom
annotated source: sulfur oxide
annotated property: has_related_synonym
annotated target: sulfur oxides
database_cross_reference: ChEBI

polar solvent
type: Class
subclass of: solvent
definition: A solvent that is composed of polar molecules. Polar solvents can dissolve ionic compounds or ionisable covalent compounds.
has_exact_synonym: polar solvent
has OBO namespace: chebi_ontology
has_related_synonym: polar solvents
id: CHEBI:48354
in_subset: 3 STAR

Axiom
annotated source: polar solvent
annotated property: has_exact_synonym
annotated target: polar solvent
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: polar solvent
annotated property: has_related_synonym
annotated target: polar solvents
database_cross_reference: ChEBI

protic solvent
type: Class
subclass of: Bronsted acid
subclass of: polar solvent
definition: A polar solvent that is capable of acting as a hydron (proton) donor.
has_exact_synonym: protogenic solvent
has OBO namespace: chebi_ontology
id: CHEBI:48356
in_subset: 3 STAR

Axiom
annotated source: protic solvent
annotated property: has_exact_synonym
annotated target: protogenic solvent
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

protophilic solvent
type: Class
subclass of: Bronsted base
subclass of: polar solvent
definition: Solvent that is capable of acting as a hydron (proton) acceptor.
has_exact_synonym: protophilic solvent
has OBO namespace: chebi_ontology
has_related_synonym: HBA solvent
has_related_synonym: hydrogen bond acceptor solvent
id: CHEBI:48359
in_subset: 3 STAR

Axiom
annotated source: protophilic solvent
annotated property: has_exact_synonym
annotated target: protophilic solvent
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: protophilic solvent
annotated property: has_related_synonym
annotated target: HBA solvent
database_cross_reference: ChEBI

Axiom
annotated source: protophilic solvent
annotated property: has_related_synonym
annotated target: hydrogen bond acceptor solvent
database_cross_reference: ChEBI

amphiprotic solvent
type: Class
subclass of: protic solvent
subclass of: protophilic solvent
definition: Self-ionizing solvent possessing both characteristics of Bronsted acids and bases.
has_exact_synonym: amphiprotic solvent
has OBO namespace: chebi_ontology
id: CHEBI:48360
in_subset: 3 STAR

Axiom
annotated source: amphiprotic solvent
annotated property: has_exact_synonym
annotated target: amphiprotic solvent
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

agonist
type: Class
subclass of: pharmacological role
definition: Substance which binds to cell receptors normally responding to naturally occurring substances and which produces a response of its own.
has_exact_synonym: agonist
has OBO namespace: chebi_ontology
has_related_synonym: agonista
has_related_synonym: agoniste
has_related_synonym: agonists
id: CHEBI:48705
in_subset: 3 STAR

Axiom
annotated source: agonist
annotated property: has_exact_synonym
annotated target: agonist
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: agonist
annotated property: has_related_synonym
annotated target: agonista
database_cross_reference: ChEBI

Axiom
annotated source: agonist
annotated property: has_related_synonym
annotated target: agoniste
database_cross_reference: ChEBI

Axiom
annotated source: agonist
annotated property: has_related_synonym
annotated target: agonists
database_cross_reference: ChEBI

antagonist
type: Class
subclass of: pharmacological role
definition: Substance that attaches to and blocks cell receptors that normally bind naturally occurring substances.
has_exact_synonym: antagonist
has OBO namespace: chebi_ontology
has_related_synonym: antagonista
has_related_synonym: antagoniste
has_related_synonym: antagonists
id: CHEBI:48706
in_subset: 3 STAR

Axiom
annotated source: antagonist
annotated property: has_exact_synonym
annotated target: antagonist
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: antagonist
annotated property: has_related_synonym
annotated target: antagonista
database_cross_reference: ChEBI

Axiom
annotated source: antagonist
annotated property: has_related_synonym
annotated target: antagoniste
database_cross_reference: ChEBI

Axiom
annotated source: antagonist
annotated property: has_related_synonym
annotated target: antagonists
database_cross_reference: ChEBI

hydrogen atom
type: Class
subclass of: inorganic molecular entity
subclass of: nonmetal atom
subclass of: s-block element atom
subclass of: Restriction
  on property: has role
  some values from: macronutrient
charge: 0
formula: H
inchi: InChI=1S/H
inchikey: YZCKVEUIGOORGS-UHFFFAOYSA-N
mass: 1.00794
monoisotopicmass: 1.00783
smiles: [H]
has alternative id: CHEBI:24634
has alternative id: CHEBI:49636
database_cross_reference: WebElements:H
has_exact_synonym: hydrogen
has OBO namespace: chebi_ontology
has_related_synonym: 1H
has_related_synonym: H
has_related_synonym: Wasserstoff
has_related_synonym: hidrogeno
has_related_synonym: hydrogen
has_related_synonym: hydrogene
id: CHEBI:49637
in_subset: 3 STAR

Axiom
annotated source: hydrogen atom
annotated property: has_exact_synonym
annotated target: hydrogen
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogen atom
annotated property: has_related_synonym
annotated target: 1H
database_cross_reference: IUPAC

Axiom
annotated source: hydrogen atom
annotated property: has_related_synonym
annotated target: H
database_cross_reference: IUPAC

Axiom
annotated source: hydrogen atom
annotated property: has_related_synonym
annotated target: Wasserstoff
database_cross_reference: ChEBI

Axiom
annotated source: hydrogen atom
annotated property: has_related_synonym
annotated target: hidrogeno
database_cross_reference: ChEBI

Axiom
annotated source: hydrogen atom
annotated property: has_related_synonym
annotated target: hydrogen
database_cross_reference: ChEBI

Axiom
annotated source: hydrogen atom
annotated property: has_related_synonym
annotated target: hydrogene
database_cross_reference: ChEBI

organic amino compound
type: Class
subclass of: organonitrogen compound
subclass of: Restriction
  on property: has role
  some values from: Bronsted base
subclass of: Restriction
  on property: has parent hydride
  some values from: ammonia
definition: A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups.
has OBO namespace: chebi_ontology
has_related_synonym: organic amino compounds
id: CHEBI:50047
in_subset: 3 STAR

Axiom
annotated source: organic amino compound
annotated property: has_related_synonym
annotated target: organic amino compounds
database_cross_reference: ChEBI

P450 inhibitor
type: Class
subclass of: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
definition: An enzyme inhibitor that interferes with the activity of cytochrome P450 involved in catalysis of organic substances.
has OBO namespace: chebi_ontology
has_related_synonym: CYP2D6 inhibitor
has_related_synonym: CYP2D6 inhibitors
has_related_synonym: P450 inhibitors
has_related_synonym: cytochrome P450 inhibitor
has_related_synonym: cytochrome P450 inhibitors
id: CHEBI:50183
in_subset: 3 STAR

Axiom
annotated source: P450 inhibitor
annotated property: has_related_synonym
annotated target: CYP2D6 inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: P450 inhibitor
annotated property: has_related_synonym
annotated target: CYP2D6 inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: P450 inhibitor
annotated property: has_related_synonym
annotated target: P450 inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: P450 inhibitor
annotated property: has_related_synonym
annotated target: cytochrome P450 inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: P450 inhibitor
annotated property: has_related_synonym
annotated target: cytochrome P450 inhibitors
database_cross_reference: ChEBI

canonical nucleotide residue
type: Class
subclass of: nucleotide residue
has OBO namespace: chebi_ontology
has_related_synonym: canonical nucleotide residues
id: CHEBI:50297
in_subset: 3 STAR

Axiom
annotated source: canonical nucleotide residue
annotated property: has_related_synonym
annotated target: canonical nucleotide residues
database_cross_reference: ChEBI

canonical deoxyribonucleotide residue
type: Class
subclass of: canonical nucleotide residue
has OBO namespace: chebi_ontology
has_related_synonym: canonical deoxyribonucleotide residues
id: CHEBI:50298
in_subset: 3 STAR

Axiom
annotated source: canonical deoxyribonucleotide residue
annotated property: has_related_synonym
annotated target: canonical deoxyribonucleotide residues
database_cross_reference: ChEBI

canonical ribonucleotide residue
type: Class
subclass of: canonical nucleotide residue
has OBO namespace: chebi_ontology
has_related_synonym: canonical ribonucleotide residues
id: CHEBI:50299
in_subset: 3 STAR

Axiom
annotated source: canonical ribonucleotide residue
annotated property: has_related_synonym
annotated target: canonical ribonucleotide residues
database_cross_reference: ChEBI

onium compound
type: Class
subclass of: heteroatomic molecular entity
has OBO namespace: chebi_ontology
id: CHEBI:50312
in_subset: 1 STAR

onium cation
type: Class
subclass of: onium compound
definition: Mononuclear cations derived by addition of a hydron to a mononuclear parent hydride of the pnictogen, chalcogen and halogen families.
has_exact_synonym: onium cations
has OBO namespace: chebi_ontology
has_related_synonym: onium cations
has_related_synonym: onium ion
has_related_synonym: onium ions
id: CHEBI:50313
in_subset: 3 STAR

Axiom
annotated source: onium cation
annotated property: has_exact_synonym
annotated target: onium cations
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: onium cation
annotated property: has_related_synonym
annotated target: onium cations
database_cross_reference: ChEBI

Axiom
annotated source: onium cation
annotated property: has_related_synonym
annotated target: onium ion
database_cross_reference: ChEBI

Axiom
annotated source: onium cation
annotated property: has_related_synonym
annotated target: onium ions
database_cross_reference: ChEBI

nucleotide residue
type: Class
subclass of: organic group
has OBO namespace: chebi_ontology
has_related_synonym: nucleotide residues
id: CHEBI:50319
in_subset: 3 STAR

Axiom
annotated source: nucleotide residue
annotated property: has_related_synonym
annotated target: nucleotide residues
database_cross_reference: ChEBI

nucleoside residue
type: Class
subclass of: organic group
has OBO namespace: chebi_ontology
has_related_synonym: nucleoside residues
id: CHEBI:50320
in_subset: 3 STAR

Axiom
annotated source: nucleoside residue
annotated property: has_related_synonym
annotated target: nucleoside residues
database_cross_reference: ChEBI

probe
type: Class
subclass of: application
definition: A role played by a molecular entity used to study the microscopic environment.
has OBO namespace: chebi_ontology
id: CHEBI:50406
in_subset: 3 STAR

alkyl alcohol
type: Class
subclass of: aliphatic alcohol
definition: An aliphatic alcohol in which the aliphatic alkane chain is substituted by a hydroxy group at unspecified position.
has alternative id: CHEBI:22937
has alternative id: CHEBI:50581
has OBO namespace: chebi_ontology
has_related_synonym: alkyl alcohols
has_related_synonym: hydroxyalkane
has_related_synonym: hydroxyalkanes
id: CHEBI:50584
in_subset: 3 STAR

Axiom
annotated source: alkyl alcohol
annotated property: has_related_synonym
annotated target: alkyl alcohols
database_cross_reference: ChEBI

Axiom
annotated source: alkyl alcohol
annotated property: has_related_synonym
annotated target: hydroxyalkane
database_cross_reference: ChEBI

Axiom
annotated source: alkyl alcohol
annotated property: has_related_synonym
annotated target: hydroxyalkanes
database_cross_reference: ChEBI

organic molecular entity
type: Class
subclass of: carbon group molecular entity
subclass of: Restriction
  on property: has part
  some values from: carbon atom
definition: Any molecular entity that contains carbon.
has alternative id: CHEBI:25700
has alternative id: CHEBI:33244
has OBO namespace: chebi_ontology
has_related_synonym: organic compounds
has_related_synonym: organic entity
has_related_synonym: organic molecular entities
id: CHEBI:50860
in_subset: 3 STAR

Axiom
annotated source: organic molecular entity
annotated property: has_related_synonym
annotated target: organic compounds
database_cross_reference: ChEBI

Axiom
annotated source: organic molecular entity
annotated property: has_related_synonym
annotated target: organic entity
database_cross_reference: ChEBI

Axiom
annotated source: organic molecular entity
annotated property: has_related_synonym
annotated target: organic molecular entities
database_cross_reference: ChEBI

role
type: Class
subclass of: role
definition: A role is particular behaviour which a material entity may exhibit.
has OBO namespace: chebi_ontology
id: CHEBI:50906
in_subset: 3 STAR

neurotoxin
type: Class
subclass of: aetiopathogenetic role
subclass of: poison
definition: A poison that interferes with the functions of the nervous system.
has alternative id: CHEBI:50911
database_cross_reference: Wikipedia:Neurotoxin
has OBO namespace: chebi_ontology
has_related_synonym: agente neurotoxico
has_related_synonym: nerve poison
has_related_synonym: nerve poisons
has_related_synonym: neurotoxic agent
has_related_synonym: neurotoxic agents
has_related_synonym: neurotoxicant
has_related_synonym: neurotoxins
id: CHEBI:50910
in_subset: 3 STAR

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: agente neurotoxico
database_cross_reference: ChEBI

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: nerve poison
database_cross_reference: ChEBI

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: nerve poisons
database_cross_reference: ChEBI

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: neurotoxic agent
database_cross_reference: ChEBI

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: neurotoxic agents
database_cross_reference: ChEBI

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: neurotoxicant
database_cross_reference: ChEBI

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: neurotoxins
database_cross_reference: ChEBI

primary amino compound
type: Class
subclass of: organic amino compound
subclass of: Restriction
  on property: is conjugate base of
  some values from: primary ammonium ion
definition: A compound formally derived from ammonia by replacing one hydrogen atom by an organyl group.
has OBO namespace: chebi_ontology
has_related_synonym: primary amino compounds
id: CHEBI:50994
in_subset: 3 STAR

Axiom
annotated source: primary amino compound
annotated property: has_related_synonym
annotated target: primary amino compounds
database_cross_reference: ChEBI

chemical role
type: Class
subclass of: role
definition: A role played by the molecular entity or part thereof within a chemical context.
has OBO namespace: chebi_ontology
id: CHEBI:51086
in_subset: 3 STAR

nitrogen molecular entity
type: Class
subclass of: pnictogen molecular entity
subclass of: Restriction
  on property: has part
  some values from: nitrogen atom
has alternative id: CHEBI:25556
has alternative id: CHEBI:7594
database_cross_reference: KEGG:C06061
has OBO namespace: chebi_ontology
has_related_synonym: Nitrogenous compounds
has_related_synonym: nitrogen compounds
has_related_synonym: nitrogen molecular entities
id: CHEBI:51143
in_subset: 3 STAR

Axiom
annotated source: nitrogen molecular entity
annotated property: has_related_synonym
annotated target: Nitrogenous compounds
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: nitrogen molecular entity
annotated property: has_related_synonym
annotated target: nitrogen compounds
database_cross_reference: ChEBI

Axiom
annotated source: nitrogen molecular entity
annotated property: has_related_synonym
annotated target: nitrogen molecular entities
database_cross_reference: ChEBI

dipolar compound
type: Class
subclass of: organic molecule
definition: An organic molecule that is electrically neutral carrying a positive and a negative charge in one of its major canonical descriptions. In most dipolar compounds the charges are delocalized; however the term is also applied to species where this is not the case.
has OBO namespace: chebi_ontology
has_related_synonym: dipolar compounds
id: CHEBI:51151
in_subset: 3 STAR

Axiom
annotated source: dipolar compound
annotated property: has_related_synonym
annotated target: dipolar compounds
database_cross_reference: ChEBI

organodiyl group
type: Class
subclass of: organic divalent group
definition: Any organic substituent group, regardless of functional type, having two free valences at carbon atom(s).
has OBO namespace: chebi_ontology
has_related_synonym: organodiyl groups
id: CHEBI:51422
in_subset: 3 STAR

Axiom
annotated source: organodiyl group
annotated property: has_related_synonym
annotated target: organodiyl groups
database_cross_reference: ChEBI

organic divalent group
type: Class
subclass of: organic group
has OBO namespace: chebi_ontology
id: CHEBI:51446
in_subset: 1 STAR

organic univalent group
type: Class
subclass of: organic group
has OBO namespace: chebi_ontology
id: CHEBI:51447
in_subset: 1 STAR

organic polycyclic compound
type: Class
subclass of: polycyclic compound
subclass of: organic cyclic compound
has OBO namespace: chebi_ontology
has_related_synonym: organic polycyclic compounds
id: CHEBI:51958
in_subset: 3 STAR

Axiom
annotated source: organic polycyclic compound
annotated property: has_related_synonym
annotated target: organic polycyclic compounds
database_cross_reference: ChEBI

methoxide
type: Class
subclass of: organic anion
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: is conjugate base of
  some values from: methanol
definition: An organic anion that is the conjugate base of methanol.
charge: -1
formula: CH3O
inchi: InChI=1S/CH3O/c1-2/h1H3/q-1
inchikey: NBTOZLQBSIZIKS-UHFFFAOYSA-N
mass: 31.03390
monoisotopicmass: 31.01894
smiles: C[O-]
database_cross_reference: Reaxys:1839368
has OBO namespace: chebi_ontology
has_related_synonym: methoxide ion
id: CHEBI:52090
in_subset: 3 STAR

Axiom
annotated source: methoxide
annotated property: database_cross_reference
annotated target: Reaxys:1839368
source: Reaxys

Axiom
annotated source: methoxide
annotated property: has_related_synonym
annotated target: methoxide ion
database_cross_reference: ChEBI

biochemical role
type: Class
subclass of: biological role
definition: A biological role played by the molecular entity or part thereof within a biochemical context.
has OBO namespace: chebi_ontology
id: CHEBI:52206
in_subset: 3 STAR

aetiopathogenetic role
type: Class
subclass of: biological role
definition: A role played by the molecular entity or part thereof which causes the development of a pathological process.
has OBO namespace: chebi_ontology
has_related_synonym: etiopathogenetic agent
has_related_synonym: etiopathogenetic role
id: CHEBI:52209
in_subset: 3 STAR

Axiom
annotated source: aetiopathogenetic role
annotated property: has_related_synonym
annotated target: etiopathogenetic agent
database_cross_reference: ChEBI

Axiom
annotated source: aetiopathogenetic role
annotated property: has_related_synonym
annotated target: etiopathogenetic role
database_cross_reference: ChEBI

pharmacological role
type: Class
subclass of: biological role
definition: A biological role which describes how a drug interacts within a biological system and how the interactions affect its medicinal properties.
has OBO namespace: chebi_ontology
id: CHEBI:52210
in_subset: 3 STAR

physiological role
type: Class
subclass of: biological role
has OBO namespace: chebi_ontology
id: CHEBI:52211
in_subset: 1 STAR

ligand
type: Class
subclass of: chemical role
definition: Any molecule or ion capable of binding to a central metal atom to form coordination complexes.
database_cross_reference: Wikipedia:Ligand
has OBO namespace: chebi_ontology
has_related_synonym: ligands
id: CHEBI:52214
in_subset: 3 STAR

Axiom
annotated source: ligand
annotated property: has_related_synonym
annotated target: ligands
database_cross_reference: ChEBI

pharmaceutical
type: Class
subclass of: application
definition: Any substance introduced into a living organism with therapeutic or diagnostic purpose.
has alternative id: CHEBI:33293
has alternative id: CHEBI:33294
has OBO namespace: chebi_ontology
has_related_synonym: farmaco
has_related_synonym: medicament
has_related_synonym: pharmaceuticals
id: CHEBI:52217
in_subset: 3 STAR

Axiom
annotated source: pharmaceutical
annotated property: has_related_synonym
annotated target: farmaco
database_cross_reference: ChEBI

Axiom
annotated source: pharmaceutical
annotated property: has_related_synonym
annotated target: medicament
database_cross_reference: ChEBI

Axiom
annotated source: pharmaceutical
annotated property: has_related_synonym
annotated target: pharmaceuticals
database_cross_reference: ChEBI

cyclic organic group
type: Class
subclass of: organic group
definition: An organic group that consists of a closed ring. It may be a substituent or a skeleton.
has OBO namespace: chebi_ontology
has_related_synonym: cyclic organic groups
id: CHEBI:52845
in_subset: 3 STAR

Axiom
annotated source: cyclic organic group
annotated property: has_related_synonym
annotated target: cyclic organic groups
database_cross_reference: ChEBI

polyanionic macromolecule
type: Class
subclass of: ionic macromolecule
definition: A polymer carrying multiple negative charges.
has OBO namespace: chebi_ontology
has_related_synonym: polyanion
has_related_synonym: polyanions
id: CHEBI:53309
in_subset: 3 STAR

Axiom
annotated source: polyanionic macromolecule
annotated property: has_related_synonym
annotated target: polyanion
database_cross_reference: ChEBI

Axiom
annotated source: polyanionic macromolecule
annotated property: has_related_synonym
annotated target: polyanions
database_cross_reference: SUBMITTER

ionic macromolecule
type: Class
subclass of: macromolecule
definition: A macromolecule containing ionic groups.
has OBO namespace: chebi_ontology
has_related_synonym: ionic polymer
has_related_synonym: polyionic macromolecule
id: CHEBI:53368
in_subset: 3 STAR

Axiom
annotated source: ionic macromolecule
annotated property: has_related_synonym
annotated target: ionic polymer
database_cross_reference: ChEBI

Axiom
annotated source: ionic macromolecule
annotated property: has_related_synonym
annotated target: polyionic macromolecule
database_cross_reference: ChEBI

glucagon
type: Class
subclass of: peptide hormone
definition: A 29-amino acid peptide hormone consisting of His, Ser, Gln, Gly, Thr, Phe, Thr, Ser, Asp, Tyr, Ser, Lys, Tyr, Leu, Asp, Ser, Arg, Arg, Ala, Gln, Asp, Phe, Val, Gln, Trp, Leu, Met, Asn and Thr residues joined in sequence.
charge: 0
formula: C153H225N43O49S
inchikey: MASNOZXLGMXCHN-ZLPAWPGGSA-N
mass: 3482.74700
monoisotopicmass: 3480.61570
database_cross_reference: CAS:16941-32-5
database_cross_reference: CAS:9007-92-5
database_cross_reference: DrugBank:DB00040
database_cross_reference: Drug_Central:2994
database_cross_reference: KEGG:C01501
database_cross_reference: KEGG:D00116
database_cross_reference: PMID:21940356
database_cross_reference: PMID:22014161
database_cross_reference: PMID:22154917
database_cross_reference: PMID:22166985
database_cross_reference: PMID:22167521
database_cross_reference: PMID:22214853
database_cross_reference: PMID:22227186
database_cross_reference: PMID:22286080
database_cross_reference: PMID:22294753
database_cross_reference: PMID:22318544
database_cross_reference: PMID:22334714
database_cross_reference: PMID:22399501
database_cross_reference: PMID:22438981
database_cross_reference: PMID:22454291
database_cross_reference: Reaxys:13191924
database_cross_reference: Wikipedia:Glucagon
has_exact_synonym: Glucagon
has_exact_synonym: L-histidyl-L-seryl-L-glutaminylglycyl-L-threonyl-L-phenylalanyl-L-threonyl-L-seryl-L-alpha-aspartyl-L-tyrosyl-L-seryl-L-lysyl-L-tyrosyl-L-leucyl-L-alpha-aspartyl-L-seryl-L-arginyl-L-arginyl-L-alanyl-L-glutaminyl-L-alpha-aspartyl-L-phenylalanyl-L-valyl-L-glutaminyl-L-tryptophyl-L-leucyl-L-methionyl-L-asparaginyl-L-threonine
has OBO namespace: chebi_ontology
has_related_synonym: Glucagone
has_related_synonym: HSQGTFTSDYSKYLDSRRAQDFVQWLMNT
has_related_synonym: His-Ser-Gln-Gly-Thr-Phe-Thr-Ser-Asp-Tyr-Ser-Lys-Tyr-Leu-Asp-Ser-Arg-Arg-Ala-Gln-Asp-Phe-Val-Gln-Trp-Leu-Met-Asn-Thr
has_related_synonym: His-ser-glu(nh2)-gly-thr-phe-thr-ser-asp-tyr-ser-lys-tyr-leu-asp-ser-arg-arg-ala-glu(NH2)-asp-phe-val-glu(NH2)-trp-leu-met-asp(NH2)-thr
has_related_synonym: glucagon
has_related_synonym: glucagonum
id: CHEBI:5391
in_subset: 3 STAR

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: CAS:16941-32-5
source: ChemIDplus

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: CAS:9007-92-5
source: ChemIDplus

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: CAS:9007-92-5
source: KEGG COMPOUND

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: Drug_Central:2994
source: DrugCentral

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:21940356
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:22014161
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:22154917
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:22166985
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:22167521
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:22214853
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:22227186
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:22286080
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:22294753
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:22318544
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:22334714
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:22399501
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:22438981
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: PMID:22454291
source: Europe PMC

Axiom
annotated source: glucagon
annotated property: database_cross_reference
annotated target: Reaxys:13191924
source: Reaxys

Axiom
annotated source: glucagon
annotated property: has_exact_synonym
annotated target: Glucagon
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: glucagon
annotated property: has_exact_synonym
annotated target: L-histidyl-L-seryl-L-glutaminylglycyl-L-threonyl-L-phenylalanyl-L-threonyl-L-seryl-L-alpha-aspartyl-L-tyrosyl-L-seryl-L-lysyl-L-tyrosyl-L-leucyl-L-alpha-aspartyl-L-seryl-L-arginyl-L-arginyl-L-alanyl-L-glutaminyl-L-alpha-aspartyl-L-phenylalanyl-L-valyl-L-glutaminyl-L-tryptophyl-L-leucyl-L-methionyl-L-asparaginyl-L-threonine
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: glucagon
annotated property: has_related_synonym
annotated target: Glucagone
database_cross_reference: ChemIDplus

Axiom
annotated source: glucagon
annotated property: has_related_synonym
annotated target: HSQGTFTSDYSKYLDSRRAQDFVQWLMNT
database_cross_reference: ChEBI

Axiom
annotated source: glucagon
annotated property: has_related_synonym
annotated target: His-Ser-Gln-Gly-Thr-Phe-Thr-Ser-Asp-Tyr-Ser-Lys-Tyr-Leu-Asp-Ser-Arg-Arg-Ala-Gln-Asp-Phe-Val-Gln-Trp-Leu-Met-Asn-Thr
database_cross_reference: ChEBI

Axiom
annotated source: glucagon
annotated property: has_related_synonym
annotated target: His-ser-glu(nh2)-gly-thr-phe-thr-ser-asp-tyr-ser-lys-tyr-leu-asp-ser-arg-arg-ala-glu(NH2)-asp-phe-val-glu(NH2)-trp-leu-met-asp(NH2)-thr
database_cross_reference: ChemIDplus

Axiom
annotated source: glucagon
annotated property: has_related_synonym
annotated target: glucagon
database_cross_reference: ChemIDplus
has synonym type: INN

Axiom
annotated source: glucagon
annotated property: has_related_synonym
annotated target: glucagonum
database_cross_reference: ChemIDplus
has synonym type: INN

heterocyclic compound
type: Class
subclass of: cyclic compound
definition: A cyclic compound having as ring members atoms of at least two different elements.
has_exact_synonym: Heterocyclic compound
has OBO namespace: chebi_ontology
has_related_synonym: compuesto heterociclico
has_related_synonym: compuestos heterociclicos
has_related_synonym: heterocycle
has_related_synonym: heterocyclic compounds
id: CHEBI:5686
in_subset: 3 STAR

Axiom
annotated source: heterocyclic compound
annotated property: has_exact_synonym
annotated target: Heterocyclic compound
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: heterocyclic compound
annotated property: has_related_synonym
annotated target: compuesto heterociclico
database_cross_reference: IUPAC

Axiom
annotated source: heterocyclic compound
annotated property: has_related_synonym
annotated target: compuestos heterociclicos
database_cross_reference: IUPAC

Axiom
annotated source: heterocyclic compound
annotated property: has_related_synonym
annotated target: heterocycle
database_cross_reference: ChEBI

Axiom
annotated source: heterocyclic compound
annotated property: has_related_synonym
annotated target: heterocyclic compounds
database_cross_reference: ChEBI

tryptaminium
type: Class
subclass of: ammonium ion derivative
subclass of: Restriction
  on property: has role
  some values from: mouse metabolite
subclass of: Restriction
  on property: has role
  some values from: plant metabolite
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: is conjugate acid of
  some values from: tryptamine
definition: An ammonium ion that is the conjugate acid of tryptamine arising from protonation of the primary amino group; major species at pH 7.3.
charge: +1
formula: C10H13N2
inchi: InChI=1S/C10H12N2/c11-6-5-8-7-12-10-4-2-1-3-9(8)10/h1-4,7,12H,5-6,11H2/p+1
inchikey: APJYDQYYACXCRM-UHFFFAOYSA-O
mass: 161.22310
monoisotopicmass: 161.10732
smiles: [NH3+]CCc1c[nH]c2ccccc12
database_cross_reference: Gmelin:533978
has_exact_synonym: 2-(1H-indol-3-yl)ethanaminium
has OBO namespace: chebi_ontology
has_related_synonym: tryptamine
has_related_synonym: tryptaminium cation
has_related_synonym: tryptaminium(1+)
id: CHEBI:57887
in_subset: 3 STAR

Axiom
annotated source: tryptaminium
annotated property: database_cross_reference
annotated target: Gmelin:533978
source: Gmelin

Axiom
annotated source: tryptaminium
annotated property: has_exact_synonym
annotated target: 2-(1H-indol-3-yl)ethanaminium
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: tryptaminium
annotated property: has_related_synonym
annotated target: tryptamine
database_cross_reference: UniProt

Axiom
annotated source: tryptaminium
annotated property: has_related_synonym
annotated target: tryptaminium cation
database_cross_reference: ChEBI

Axiom
annotated source: tryptaminium
annotated property: has_related_synonym
annotated target: tryptaminium(1+)
database_cross_reference: ChEBI

chlorophyllide a(1-)
type: Class
subclass of: cyclic tetrapyrrole anion
subclass of: Restriction
  on property: is conjugate acid of
  some values from: chlorophyllide a(2-)
subclass of: Restriction
  on property: is conjugate base of
  some values from: chlorophyllide a
definition: A cyclic tetrapyrrole anion that is the conjugate base of chlorophyllide a arising from deprotonation of the carboxy group; major species at pH 7.3.
charge: -1
formula: C35H33MgN4O5
inchi: InChI=1S/C35H36N4O5.Mg/c1-8-19-15(3)22-12-24-17(5)21(10-11-28(40)41)32(38-24)30-31(35(43)44-7)34(42)29-18(6)25(39-33(29)30)14-27-20(9-2)16(4)23(37-27)13-26(19)36-22;/h8,12-14,17,21,31H,1,9-11H2,2-7H3,(H3,36,37,38,39,40,41,42);/q;+2/p-3/t17-,21-,31+;/m0./s1
inchikey: ANWUQYTXRXCEMZ-NYABAGMLSA-K
mass: 613.96600
monoisotopicmass: 613.23069
has OBO namespace: chebi_ontology
has_related_synonym: chlorophyllide a anion
id: CHEBI:57942
in_subset: 3 STAR

Axiom
annotated source: chlorophyllide a(1-)
annotated property: has_related_synonym
annotated target: chlorophyllide a anion
database_cross_reference: ChEBI

carbon monoxide(1+)
type: Class
subclass of: organic cation
subclass of: Restriction
  on property: is conjugate acid of
  some values from: carbon monoxide
definition: Conjugate acid of carbon monoxide arising from protonation of the carbon; major species at pH 7.3.
charge: +1
formula: CHO
inchi: InChI=1S/CHO/c1-2/h1H/q+1
inchikey: XPRMKTHGXOVKEH-UHFFFAOYSA-N
mass: 29.01800
monoisotopicmass: 29.00219
smiles: C#[O+]
has_exact_synonym: methylidyneoxonium
has OBO namespace: chebi_ontology
has_related_synonym: CO(1+)
has_related_synonym: methylidyneoxidanium
id: CHEBI:58072
in_subset: 3 STAR

Axiom
annotated source: carbon monoxide(1+)
annotated property: has_exact_synonym
annotated target: methylidyneoxonium
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbon monoxide(1+)
annotated property: has_related_synonym
annotated target: CO(1+)
database_cross_reference: ChEBI

Axiom
annotated source: carbon monoxide(1+)
annotated property: has_related_synonym
annotated target: methylidyneoxidanium
database_cross_reference: ChEBI

chlorophyll a(1-)
type: Class
subclass of: chlorophyll(1-)
subclass of: Restriction
  on property: has role
  some values from: cofactor
subclass of: Restriction
  on property: is conjugate base of
  some values from: chlorophyll a
definition: A cyclic tetrapyrrole anion arising from deprotonation at the 21-position of chlorophyll a.
charge: -1
formula: C55H71MgN4O5
inchi: InChI=1S/C55H72N4O5.Mg/c1-13-39-35(8)42-28-44-37(10)41(24-25-48(60)64-27-26-34(7)23-17-22-33(6)21-16-20-32(5)19-15-18-31(3)4)52(58-44)50-51(55(62)63-12)54(61)49-38(11)45(59-53(49)50)30-47-40(14-2)36(9)43(57-47)29-46(39)56-42;/h13,26,28-33,37,41H,1,14-25,27H2,2-12H3,(H-,56,57,58,59,61);/q-2;+2/p-1/b34-26+;/t32-,33-,37+,41+;/m1./s1
inchikey: VSRAJQZEEBBURZ-ONWAGYJKSA-M
mass: 892.48100
monoisotopicmass: 891.52804
has OBO namespace: chebi_ontology
has_related_synonym: chlorophyll a
id: CHEBI:58416
in_subset: 3 STAR

Axiom
annotated source: chlorophyll a(1-)
annotated property: has_related_synonym
annotated target: chlorophyll a
database_cross_reference: UniProt

cyclic tetrapyrrole anion
type: Class
subclass of: organic anion
definition: An organic anion arising from deprotonation of a cyclic tetrapyrrole compound.
has OBO namespace: chebi_ontology
has_related_synonym: cyclic tetrapyrrole anions
id: CHEBI:58941
in_subset: 3 STAR

Axiom
annotated source: cyclic tetrapyrrole anion
annotated property: has_related_synonym
annotated target: cyclic tetrapyrrole anions
database_cross_reference: ChEBI

organosulfate oxoanion
type: Class
subclass of: organic anion
subclass of: sulfur oxoanion
subclass of: Restriction
  on property: has functional parent
  some values from: sulfate
subclass of: Restriction
  on property: is conjugate base of
  some values from: organic sulfate
definition: An organic anion of general formula RS(=O)2O(-) where R is an organyl group.
charge: -1
formula: O4SR
mass: 96.06300
monoisotopicmass: 95.95173
smiles: [O-]S(=O)(=O)O[*]
has OBO namespace: chebi_ontology
has_related_synonym: organosulfate oxoanions
id: CHEBI:58958
in_subset: 3 STAR

Axiom
annotated source: organosulfate oxoanion
annotated property: has_related_synonym
annotated target: organosulfate oxoanions
database_cross_reference: ChEBI

biomarker
type: Class
subclass of: indicator
definition: A substance used as an indicator of a biological state.
has OBO namespace: chebi_ontology
has_related_synonym: biological marker
id: CHEBI:59163
in_subset: 3 STAR

Axiom
annotated source: biomarker
annotated property: has_related_synonym
annotated target: biological marker
database_cross_reference: ChEBI

phosphoric acids
type: Class
subclass of: phosphorus oxoacid
definition: Compounds containing one or more phosphoric acid units.
has OBO namespace: chebi_ontology
id: CHEBI:59698
in_subset: 3 STAR

nucleophilic reagent
type: Class
subclass of: reagent
subclass of: Lewis base
definition: A reagent that forms a bond to its reaction partner (the electrophile) by donating both bonding electrons.
has OBO namespace: chebi_ontology
has_related_synonym: nucleophile
has_related_synonym: nucleophiles
has_related_synonym: nucleophilic reagents
id: CHEBI:59740
in_subset: 3 STAR

Axiom
annotated source: nucleophilic reagent
annotated property: has_related_synonym
annotated target: nucleophile
database_cross_reference: ChEBI

Axiom
annotated source: nucleophilic reagent
annotated property: has_related_synonym
annotated target: nucleophiles
database_cross_reference: ChEBI

Axiom
annotated source: nucleophilic reagent
annotated property: has_related_synonym
annotated target: nucleophilic reagents
database_cross_reference: ChEBI

chemical substance
type: Class
subclass of: chemical entity
definition: A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types.
has OBO namespace: chebi_ontology
has_related_synonym: Chemische Substanz
id: CHEBI:59999
in_subset: 3 STAR

Axiom
annotated source: chemical substance
annotated property: has_related_synonym
annotated target: Chemische Substanz
database_cross_reference: ChEBI

mixture
type: Class
subclass of: chemical substance
definition: A mixture is a chemical substance composed of multiple molecules, at least two of which are of a different kind.
has OBO namespace: chebi_ontology
has_related_synonym: Mischung
id: CHEBI:60004
in_subset: 3 STAR

Axiom
annotated source: mixture
annotated property: has_related_synonym
annotated target: Mischung
database_cross_reference: ChEBI

polymer
type: Class
subclass of: mixture
subclass of: Restriction
  on property: has part
  some values from: macromolecule
definition: A polymer is a mixture, which is composed of macromolecules of different kinds and which may be differentiated by composition, length, degree of branching etc..
database_cross_reference: Wikipedia:Polymer
has_exact_synonym: Polymer
has OBO namespace: chebi_ontology
has_related_synonym: Kunststoff
id: CHEBI:60027
in_subset: 3 STAR

Axiom
annotated source: polymer
annotated property: has_exact_synonym
annotated target: Polymer
database_cross_reference: ChEBI

Axiom
annotated source: polymer
annotated property: has_related_synonym
annotated target: Kunststoff
database_cross_reference: ChEBI

ionic polymer
type: Class
subclass of: polymer
subclass of: Restriction
  on property: has part
  some values from: ionic macromolecule
definition: An ionic polymer is a polymer, composed of ionic macromolecules.
has OBO namespace: chebi_ontology
has_related_synonym: polyionic polymer
id: CHEBI:60164
in_subset: 3 STAR

Axiom
annotated source: ionic polymer
annotated property: has_related_synonym
annotated target: polyionic polymer
database_cross_reference: ChEBI

monovalent inorganic cation
type: Class
subclass of: inorganic cation
definition: An atom or small molecule with a positive charge that does not contain carbon in covalent linkage, with a valency of one.
has OBO namespace: chebi_ontology
has_related_synonym: a monovalent cation
id: CHEBI:60242
in_subset: 3 STAR

Axiom
annotated source: monovalent inorganic cation
annotated property: has_related_synonym
annotated target: a monovalent cation
database_cross_reference: UniProt

peptide zwitterion
type: Class
subclass of: zwitterion
subclass of: Restriction
  on property: is tautomer of
  some values from: peptide
definition: Zwitterionic form of any peptide where, in general, the amino terminus is positively charged and the carboxy terminus is negatively charged.
charge: 0
formula: C2H4NO2R(C2H2NOR)n
has OBO namespace: chebi_ontology
has_related_synonym: a peptide
has_related_synonym: peptide zwitterions
id: CHEBI:60466
in_subset: 3 STAR

Axiom
annotated source: peptide zwitterion
annotated property: has_related_synonym
annotated target: a peptide
database_cross_reference: UniProt

Axiom
annotated source: peptide zwitterion
annotated property: has_related_synonym
annotated target: peptide zwitterions
database_cross_reference: ChEBI

nucleobase-containing molecular entity
type: Class
subclass of: heteroarene
subclass of: nitrogen molecular entity
subclass of: Restriction
  on property: has functional parent
  some values from: nucleobase
definition: Any compound that has a nucleobase as a part.
has OBO namespace: chebi_ontology
has_related_synonym: nucleobase-containing compound
has_related_synonym: nucleobase-containing compounds
has_related_synonym: nucleobase-containing molecular entities
id: CHEBI:61120
in_subset: 3 STAR

Axiom
annotated source: nucleobase-containing molecular entity
annotated property: has_related_synonym
annotated target: nucleobase-containing compound
database_cross_reference: SUBMITTER

Axiom
annotated source: nucleobase-containing molecular entity
annotated property: has_related_synonym
annotated target: nucleobase-containing compounds
database_cross_reference: ChEBI

Axiom
annotated source: nucleobase-containing molecular entity
annotated property: has_related_synonym
annotated target: nucleobase-containing molecular entities
database_cross_reference: ChEBI

polyanionic polymer
type: Class
subclass of: ionic polymer
subclass of: Restriction
  on property: has part
  some values from: polyanionic macromolecule
definition: A polymer, composed of polyanion macromolecules.
has OBO namespace: chebi_ontology
has_related_synonym: polyanion
has_related_synonym: polyanions
id: CHEBI:61469
in_subset: 3 STAR

Axiom
annotated source: polyanionic polymer
annotated property: has_related_synonym
annotated target: polyanion
database_cross_reference: ChEBI

Axiom
annotated source: polyanionic polymer
annotated property: has_related_synonym
annotated target: polyanions
database_cross_reference: ChEBI

signalling molecule
type: Class
subclass of: molecular messenger
definition: A molecular messenger in which the molecule is specifically involved in transmitting information between cells. Such molecules are released from the cell sending the signal, cross over the gap between cells by diffusion, and interact with specific receptors in another cell, triggering a response in that cell by activating a series of enzyme controlled reactions which lead to changes inside the cell.
has OBO namespace: chebi_ontology
has_related_synonym: signal molecule
has_related_synonym: signal molecules
has_related_synonym: signaling molecule
has_related_synonym: signaling molecules
has_related_synonym: signalling molecules
id: CHEBI:62488
in_subset: 3 STAR

Axiom
annotated source: signalling molecule
annotated property: has_related_synonym
annotated target: signal molecule
database_cross_reference: ChEBI

Axiom
annotated source: signalling molecule
annotated property: has_related_synonym
annotated target: signal molecules
database_cross_reference: ChEBI

Axiom
annotated source: signalling molecule
annotated property: has_related_synonym
annotated target: signaling molecule
database_cross_reference: ChEBI

Axiom
annotated source: signalling molecule
annotated property: has_related_synonym
annotated target: signaling molecules
database_cross_reference: ChEBI

Axiom
annotated source: signalling molecule
annotated property: has_related_synonym
annotated target: signalling molecules
database_cross_reference: ChEBI

reactive nitrogen species
type: Class
subclass of: nitrogen molecular entity
definition: A family of nitrogen molecular entities which are highly reactive and derived from nitric oxide (.NO) and superoxide (O2.(-)) produced via the enzymatic activity of inducible nitric oxide synthase 2 (NOS2) and NADPH oxidase respectively.
database_cross_reference: PMID:12076975
database_cross_reference: PMID:17667957
database_cross_reference: PMID:9741578
database_cross_reference: Wikipedia:Reactive_nitrogen_species
has OBO namespace: chebi_ontology
has_related_synonym: RNI
has_related_synonym: RNS
id: CHEBI:62764
in_subset: 3 STAR

Axiom
annotated source: reactive nitrogen species
annotated property: database_cross_reference
annotated target: PMID:12076975
source: SUBMITTER

Axiom
annotated source: reactive nitrogen species
annotated property: database_cross_reference
annotated target: PMID:17667957
source: SUBMITTER

Axiom
annotated source: reactive nitrogen species
annotated property: database_cross_reference
annotated target: PMID:9741578
source: SUBMITTER

Axiom
annotated source: reactive nitrogen species
annotated property: has_related_synonym
annotated target: RNI
database_cross_reference: SUBMITTER

Axiom
annotated source: reactive nitrogen species
annotated property: has_related_synonym
annotated target: RNS
database_cross_reference: SUBMITTER

oxidising agent
type: Class
subclass of: chemical role
definition: A substance that removes electrons from another reactant in a redox reaction.
has OBO namespace: chebi_ontology
has_related_synonym: oxidant
has_related_synonym: oxidants
has_related_synonym: oxidiser
has_related_synonym: oxidisers
has_related_synonym: oxidising agents
has_related_synonym: oxidizer
has_related_synonym: oxidizers
has_related_synonym: oxidizing agent
has_related_synonym: oxidizing agents
id: CHEBI:63248
in_subset: 3 STAR

Axiom
annotated source: oxidising agent
annotated property: has_related_synonym
annotated target: oxidant
database_cross_reference: ChEBI

Axiom
annotated source: oxidising agent
annotated property: has_related_synonym
annotated target: oxidants
database_cross_reference: ChEBI

Axiom
annotated source: oxidising agent
annotated property: has_related_synonym
annotated target: oxidiser
database_cross_reference: ChEBI

Axiom
annotated source: oxidising agent
annotated property: has_related_synonym
annotated target: oxidisers
database_cross_reference: ChEBI

Axiom
annotated source: oxidising agent
annotated property: has_related_synonym
annotated target: oxidising agents
database_cross_reference: ChEBI

Axiom
annotated source: oxidising agent
annotated property: has_related_synonym
annotated target: oxidizer
database_cross_reference: ChEBI

Axiom
annotated source: oxidising agent
annotated property: has_related_synonym
annotated target: oxidizers
database_cross_reference: ChEBI

Axiom
annotated source: oxidising agent
annotated property: has_related_synonym
annotated target: oxidizing agent
database_cross_reference: ChEBI

Axiom
annotated source: oxidising agent
annotated property: has_related_synonym
annotated target: oxidizing agents
database_cross_reference: ChEBI

carbohydrate derivative
type: Class
subclass of: carbohydrates and carbohydrate derivatives
subclass of: Restriction
  on property: has functional parent
  some values from: carbohydrate
definition: Any organooxygen compound derived from a carbohydrate by replacement of one or more hydroxy group(s) by an amino group, a thiol group or similar heteroatomic groups. The term also includes derivatives of these compounds.
has OBO namespace: chebi_ontology
has_related_synonym: carbohydrate derivatives
has_related_synonym: derivatised carbohydrate
has_related_synonym: derivatised carbohydrates
has_related_synonym: derivatized carbohydrate
has_related_synonym: derivatized carbohydrates
id: CHEBI:63299
in_subset: 3 STAR

Axiom
annotated source: carbohydrate derivative
annotated property: has_related_synonym
annotated target: carbohydrate derivatives
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate derivative
annotated property: has_related_synonym
annotated target: derivatised carbohydrate
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate derivative
annotated property: has_related_synonym
annotated target: derivatised carbohydrates
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate derivative
annotated property: has_related_synonym
annotated target: derivatized carbohydrate
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate derivative
annotated property: has_related_synonym
annotated target: derivatized carbohydrates
database_cross_reference: ChEBI

carbohydrate acid derivative
type: Class
subclass of: carbohydrate derivative
subclass of: Restriction
  on property: has functional parent
  some values from: carbohydrate acid
subclass of: Restriction
  on property: is conjugate acid of
  some values from: carbohydrate acid derivative anion
definition: A carbohydrate derivative that is formally obtained from a carbohydrate acid.
has OBO namespace: chebi_ontology
has_related_synonym: carbohydrate acid derivatives
id: CHEBI:63436
in_subset: 3 STAR

Axiom
annotated source: carbohydrate acid derivative
annotated property: has_related_synonym
annotated target: carbohydrate acid derivatives
database_cross_reference: ChEBI

monoamine
type: Class
subclass of: aralkylamino compound
definition: An aralylamino compound which contains one amino group connected to an aromatic ring by a two-carbon chain. Monoamines are derived from aromatic amino acids like phenylalanine, tyrosine, tryptophan, and the thyroid hormones by the action of aromatic amino acid decarboxylase enzymes.
database_cross_reference: PMID:21822758
database_cross_reference: PMID:21993877
database_cross_reference: PMID:22005599
database_cross_reference: PMID:22082101
database_cross_reference: PMID:22153577
database_cross_reference: PMID:22213370
database_cross_reference: PMID:22218931
database_cross_reference: PMID:22342987
database_cross_reference: PMID:22371656
has OBO namespace: chebi_ontology
has_related_synonym: monoamines
has_related_synonym: naturally occurring monoamine
has_related_synonym: naturally occurring monoamines
id: CHEBI:63534
in_subset: 3 STAR

Axiom
annotated source: monoamine
annotated property: database_cross_reference
annotated target: PMID:21822758
source: Europe PMC

Axiom
annotated source: monoamine
annotated property: database_cross_reference
annotated target: PMID:21993877
source: Europe PMC

Axiom
annotated source: monoamine
annotated property: database_cross_reference
annotated target: PMID:22005599
source: Europe PMC

Axiom
annotated source: monoamine
annotated property: database_cross_reference
annotated target: PMID:22082101
source: Europe PMC

Axiom
annotated source: monoamine
annotated property: database_cross_reference
annotated target: PMID:22153577
source: Europe PMC

Axiom
annotated source: monoamine
annotated property: database_cross_reference
annotated target: PMID:22213370
source: Europe PMC

Axiom
annotated source: monoamine
annotated property: database_cross_reference
annotated target: PMID:22218931
source: Europe PMC

Axiom
annotated source: monoamine
annotated property: database_cross_reference
annotated target: PMID:22342987
source: Europe PMC

Axiom
annotated source: monoamine
annotated property: database_cross_reference
annotated target: PMID:22371656
source: Europe PMC

Axiom
annotated source: monoamine
annotated property: has_related_synonym
annotated target: monoamines
database_cross_reference: ChEBI

Axiom
annotated source: monoamine
annotated property: has_related_synonym
annotated target: naturally occurring monoamine
database_cross_reference: ChEBI

Axiom
annotated source: monoamine
annotated property: has_related_synonym
annotated target: naturally occurring monoamines
database_cross_reference: ChEBI

carbohydrate acid derivative anion
type: Class
subclass of: carboxylic acid anion
subclass of: Restriction
  on property: has functional parent
  some values from: carbohydrate acid anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: carbohydrate acid derivative
definition: A carboxylic acid anion resulting from the deprotonation of the carboxy group of a carbohydrate acid derivative.
has OBO namespace: chebi_ontology
has_related_synonym: carbohydrate acid anion derivative
has_related_synonym: carbohydrate acid anion derivatives
has_related_synonym: carbohydrate acid derivative anions
id: CHEBI:63551
in_subset: 3 STAR

Axiom
annotated source: carbohydrate acid derivative anion
annotated property: has_related_synonym
annotated target: carbohydrate acid anion derivative
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate acid derivative anion
annotated property: has_related_synonym
annotated target: carbohydrate acid anion derivatives
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrate acid derivative anion
annotated property: has_related_synonym
annotated target: carbohydrate acid derivative anions
database_cross_reference: ChEBI

food additive
type: Class
subclass of: application
subclass of: food component
definition: Any substance which is added to food to preserve or enhance its flavour and/or appearance.
database_cross_reference: Wikipedia:Food_additive
has OBO namespace: chebi_ontology
has_related_synonym: food additives
id: CHEBI:64047
in_subset: 3 STAR

Axiom
annotated source: food additive
annotated property: has_related_synonym
annotated target: food additives
database_cross_reference: ChEBI

aralkylamino compound
type: Class
subclass of: organic amino compound
definition: An organic amino compound in which an aminoalkyl group is linked to an arene.
has OBO namespace: chebi_ontology
has_related_synonym: aralkylamino compounds
id: CHEBI:64365
in_subset: 3 STAR

Axiom
annotated source: aralkylamino compound
annotated property: has_related_synonym
annotated target: aralkylamino compounds
database_cross_reference: ChEBI

somatostatin
type: Class
subclass of: heterodetic cyclic peptide
subclass of: peptide hormone
definition: A fourteen-membered heterodetic cyclic peptide comprising the sequence Ala-Gly-Cys-Lys-Asn-Phe-Phe-Trp-Lys-Thr-Phe-Thr-Ser-Cys cyclised by a disulfide bridge between the two Cys residues at positions 3 and 14.
charge: 0
formula: C76H104N18O19S2
inchikey: NHXLMOGPVYXJNR-ATOGVRKGSA-N
mass: 1637.87800
monoisotopicmass: 1636.71666
database_cross_reference: CAS:38916-34-6
database_cross_reference: Drug_Central:2997
database_cross_reference: HMDB:HMDB0013072
database_cross_reference: KEGG:C16022
database_cross_reference: KEGG:D07431
database_cross_reference: LINCS:LSM-5326
database_cross_reference: PMID:21922516
database_cross_reference: PMID:22129035
database_cross_reference: PMID:22147011
database_cross_reference: PMID:22251942
database_cross_reference: PMID:22483686
database_cross_reference: PMID:22509294
database_cross_reference: Reaxys:10148626
database_cross_reference: Wikipedia:Somatostatin
has_exact_synonym: L-alanyl-N-[(4R,7S,10S,13S,16S,19S,22S,25S,28S,31S,34S,37R)-19,34-bis(4-aminobutyl)-31-(2-amino-2-oxoethyl)-13,25,28-tribenzyl-4-carboxy-10,16-bis[(1R)-1-hydroxyethyl]-7-(hydroxymethyl)-22-(1H-indol-3-ylmethyl)-6,9,12,15,18,21,24,27,30,33,36-undecaoxo-1,2-dithia-5,8,11,14,17,20,23,26,29,32,35-undecaazacyclooctatriacontan-37-yl]glycinamide
has OBO namespace: chebi_ontology
has_related_synonym: Ala-Gly-cyclo-[Cys-Lys-Asn-Phe-Phe-Trp-Lys-Thr-Phe-Thr-Ser-Cys]
has_related_synonym: L-alanylglycyl-L-cysteinyl-L-lysyl-L-asparaginyl-L-phenylalanyl-L-phenylalanyl-L-tryptophyl-L-lysyl-L-threonyl-L-phenylalanyl-L-threonyl-L-seryl-L-cysteine cyclic (3-14) disulfide
has_related_synonym: Somatostatin-1
has_related_synonym: Somatostatin-14
has_related_synonym: Synthetic growth hormone release-inhibiting hormone
has_related_synonym: somatostatin
has_related_synonym: somatostatina
has_related_synonym: somatostatine
has_related_synonym: somatostatinum
id: CHEBI:64628
in_subset: 3 STAR

Axiom
annotated source: somatostatin
annotated property: database_cross_reference
annotated target: CAS:38916-34-6
source: ChemIDplus

Axiom
annotated source: somatostatin
annotated property: database_cross_reference
annotated target: CAS:38916-34-6
source: KEGG DRUG

Axiom
annotated source: somatostatin
annotated property: database_cross_reference
annotated target: Drug_Central:2997
source: DrugCentral

Axiom
annotated source: somatostatin
annotated property: database_cross_reference
annotated target: PMID:21922516
source: Europe PMC

Axiom
annotated source: somatostatin
annotated property: database_cross_reference
annotated target: PMID:22129035
source: Europe PMC

Axiom
annotated source: somatostatin
annotated property: database_cross_reference
annotated target: PMID:22147011
source: Europe PMC

Axiom
annotated source: somatostatin
annotated property: database_cross_reference
annotated target: PMID:22251942
source: Europe PMC

Axiom
annotated source: somatostatin
annotated property: database_cross_reference
annotated target: PMID:22483686
source: Europe PMC

Axiom
annotated source: somatostatin
annotated property: database_cross_reference
annotated target: PMID:22509294
source: Europe PMC

Axiom
annotated source: somatostatin
annotated property: database_cross_reference
annotated target: Reaxys:10148626
source: Reaxys

Axiom
annotated source: somatostatin
annotated property: has_exact_synonym
annotated target: L-alanyl-N-[(4R,7S,10S,13S,16S,19S,22S,25S,28S,31S,34S,37R)-19,34-bis(4-aminobutyl)-31-(2-amino-2-oxoethyl)-13,25,28-tribenzyl-4-carboxy-10,16-bis[(1R)-1-hydroxyethyl]-7-(hydroxymethyl)-22-(1H-indol-3-ylmethyl)-6,9,12,15,18,21,24,27,30,33,36-undecaoxo-1,2-dithia-5,8,11,14,17,20,23,26,29,32,35-undecaazacyclooctatriacontan-37-yl]glycinamide
database_cross_reference: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: somatostatin
annotated property: has_related_synonym
annotated target: Ala-Gly-cyclo-[Cys-Lys-Asn-Phe-Phe-Trp-Lys-Thr-Phe-Thr-Ser-Cys]
database_cross_reference: ChEBI

Axiom
annotated source: somatostatin
annotated property: has_related_synonym
annotated target: L-alanylglycyl-L-cysteinyl-L-lysyl-L-asparaginyl-L-phenylalanyl-L-phenylalanyl-L-tryptophyl-L-lysyl-L-threonyl-L-phenylalanyl-L-threonyl-L-seryl-L-cysteine cyclic (3-14) disulfide
database_cross_reference: ChemIDplus

Axiom
annotated source: somatostatin
annotated property: has_related_synonym
annotated target: Somatostatin-1
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: somatostatin
annotated property: has_related_synonym
annotated target: Somatostatin-14
database_cross_reference: KEGG_COMPOUND

Axiom
annotated source: somatostatin
annotated property: has_related_synonym
annotated target: Synthetic growth hormone release-inhibiting hormone
database_cross_reference: ChemIDplus

Axiom
annotated source: somatostatin
annotated property: has_related_synonym
annotated target: somatostatin
database_cross_reference: KEGG_DRUG
has synonym type: INN

Axiom
annotated source: somatostatin
annotated property: has_related_synonym
annotated target: somatostatina
database_cross_reference: ChemIDplus
has synonym type: INN

Axiom
annotated source: somatostatin
annotated property: has_related_synonym
annotated target: somatostatine
database_cross_reference: ChemIDplus
has synonym type: INN

Axiom
annotated source: somatostatin
annotated property: has_related_synonym
annotated target: somatostatinum
database_cross_reference: ChemIDplus
has synonym type: INN

one-carbon compound
type: Class
subclass of: organic molecular entity
definition: An organic molecular entity containing a single carbon atom (C1).
has OBO namespace: chebi_ontology
has_related_synonym: one-carbon compounds
id: CHEBI:64708
in_subset: 3 STAR

Axiom
annotated source: one-carbon compound
annotated property: has_related_synonym
annotated target: one-carbon compounds
database_cross_reference: ChEBI

organic acid
type: Class
subclass of: organic molecular entity
definition: Any organic molecular entity that is acidic and contains carbon in covalent linkage.
has OBO namespace: chebi_ontology
has_related_synonym: organic acids
id: CHEBI:64709
in_subset: 3 STAR

Axiom
annotated source: organic acid
annotated property: has_related_synonym
annotated target: organic acids
database_cross_reference: ChEBI

poison
type: Class
subclass of: biological role
definition: Any substance that causes disturbance to organisms by chemical reaction or other activity on the molecular scale, when a sufficient quantity is absorbed by the organism.
database_cross_reference: Wikipedia:Poison
has OBO namespace: chebi_ontology
has_related_synonym: poisonous agent
has_related_synonym: poisonous agents
has_related_synonym: poisonous substance
has_related_synonym: poisonous substances
has_related_synonym: poisons
has_related_synonym: toxic agent
has_related_synonym: toxic agents
has_related_synonym: toxic substance
has_related_synonym: toxic substances
id: CHEBI:64909
in_subset: 3 STAR

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: poisonous agent
database_cross_reference: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: poisonous agents
database_cross_reference: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: poisonous substance
database_cross_reference: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: poisonous substances
database_cross_reference: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: poisons
database_cross_reference: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: toxic agent
database_cross_reference: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: toxic agents
database_cross_reference: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: toxic substance
database_cross_reference: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: toxic substances
database_cross_reference: ChEBI

polysaccharide derivative
type: Class
subclass of: glycan
subclass of: biomacromolecule
subclass of: carbohydrate derivative
subclass of: Restriction
  on property: has functional parent
  some values from: polysaccharide
definition: A carbohydrate derivative that is any derivative of a polysaccharide.
has OBO namespace: chebi_ontology
has_related_synonym: polysaccharide derivatives
id: CHEBI:65212
in_subset: 3 STAR

Axiom
annotated source: polysaccharide derivative
annotated property: has_related_synonym
annotated target: polysaccharide derivatives
database_cross_reference: ChEBI

primary ammonium ion
type: Class
subclass of: organic cation
subclass of: ammonium ion derivative
subclass of: Restriction
  on property: is conjugate acid of
  some values from: primary amino compound
definition: An ammonium ion derivative resulting from the protonation of the nitrogen atom of a primary amino compound. Major species at pH 7.3.
charge: +1
formula: H3NR
mass: 17.031
monoisotopicmass: 17.02655
smiles: [NH3+][*]
has OBO namespace: chebi_ontology
has_related_synonym: a primary amine
has_related_synonym: substituted ammonium
id: CHEBI:65296
in_subset: 3 STAR

Axiom
annotated source: primary ammonium ion
annotated property: has_related_synonym
annotated target: a primary amine
database_cross_reference: UniProt

Axiom
annotated source: primary ammonium ion
annotated property: has_related_synonym
annotated target: substituted ammonium
database_cross_reference: ChEBI

anti-inflammatory agent
type: Class
subclass of: application
definition: Any compound that has anti-inflammatory effects.
has OBO namespace: chebi_ontology
has_related_synonym: anti-inflammatory agents
has_related_synonym: antiinflammatory agent
has_related_synonym: antiinflammatory agents
id: CHEBI:67079
in_subset: 3 STAR

Axiom
annotated source: anti-inflammatory agent
annotated property: has_related_synonym
annotated target: anti-inflammatory agents
database_cross_reference: ChEBI

Axiom
annotated source: anti-inflammatory agent
annotated property: has_related_synonym
annotated target: antiinflammatory agent
database_cross_reference: ChEBI

Axiom
annotated source: anti-inflammatory agent
annotated property: has_related_synonym
annotated target: antiinflammatory agents
database_cross_reference: ChEBI

organic molecule
type: Class
subclass of: molecule
subclass of: organic molecular entity
definition: Any molecule that consists of at least one carbon atom as part of the electrically neutral entity.
has OBO namespace: chebi_ontology
has_related_synonym: organic compound
has_related_synonym: organic compounds
has_related_synonym: organic molecules
id: CHEBI:72695
in_subset: 3 STAR

Axiom
annotated source: organic molecule
annotated property: has_related_synonym
annotated target: organic compound
database_cross_reference: ChEBI

Axiom
annotated source: organic molecule
annotated property: has_related_synonym
annotated target: organic compounds
database_cross_reference: ChEBI

Axiom
annotated source: organic molecule
annotated property: has_related_synonym
annotated target: organic molecules
database_cross_reference: ChEBI

exopolysaccharide
type: Class
subclass of: biomacromolecule
definition: A biomacromolecule composed of carbohydrate residues which is secreted by a microorganism into the surrounding environment.
database_cross_reference: MetaCyc:Exopolysaccharides
database_cross_reference: PMID:11160795
database_cross_reference: PMID:11785425
database_cross_reference: PMID:1444258
database_cross_reference: PMID:15738217
database_cross_reference: PMID:16075348
database_cross_reference: PMID:17440912
database_cross_reference: PMID:18097339
database_cross_reference: PMID:19453747
database_cross_reference: PMID:20172021
database_cross_reference: PMID:20631870
database_cross_reference: PMID:20718297
database_cross_reference: PMID:2688547
database_cross_reference: PMID:6354590
database_cross_reference: Wikipedia:Exopolysaccharide
database_cross_reference: Wikipedia:Extracellular_polymeric_substance
has OBO namespace: chebi_ontology
has_related_synonym: exopolysaccharides
has_related_synonym: extracellular polymeric substance
has_related_synonym: extracellular polymeric substances
id: CHEBI:72813
in_subset: 3 STAR

Axiom
annotated source: exopolysaccharide
annotated property: database_cross_reference
annotated target: PMID:11160795
source: Europe PMC

Axiom
annotated source: exopolysaccharide
annotated property: database_cross_reference
annotated target: PMID:11785425
source: Europe PMC

Axiom
annotated source: exopolysaccharide
annotated property: database_cross_reference
annotated target: PMID:1444258
source: Europe PMC

Axiom
annotated source: exopolysaccharide
annotated property: database_cross_reference
annotated target: PMID:15738217
source: Europe PMC

Axiom
annotated source: exopolysaccharide
annotated property: database_cross_reference
annotated target: PMID:16075348
source: Europe PMC

Axiom
annotated source: exopolysaccharide
annotated property: database_cross_reference
annotated target: PMID:17440912
source: Europe PMC

Axiom
annotated source: exopolysaccharide
annotated property: database_cross_reference
annotated target: PMID:18097339
source: Europe PMC

Axiom
annotated source: exopolysaccharide
annotated property: database_cross_reference
annotated target: PMID:19453747
source: Europe PMC

Axiom
annotated source: exopolysaccharide
annotated property: database_cross_reference
annotated target: PMID:20172021
source: Europe PMC

Axiom
annotated source: exopolysaccharide
annotated property: database_cross_reference
annotated target: PMID:20631870
source: Europe PMC

Axiom
annotated source: exopolysaccharide
annotated property: database_cross_reference
annotated target: PMID:20718297
source: Europe PMC

Axiom
annotated source: exopolysaccharide
annotated property: database_cross_reference
annotated target: PMID:2688547
source: Europe PMC

Axiom
annotated source: exopolysaccharide
annotated property: database_cross_reference
annotated target: PMID:6354590
source: Europe PMC

Axiom
annotated source: exopolysaccharide
annotated property: has_related_synonym
annotated target: exopolysaccharides
database_cross_reference: ChEBI

Axiom
annotated source: exopolysaccharide
annotated property: has_related_synonym
annotated target: extracellular polymeric substance
database_cross_reference: ChEBI

Axiom
annotated source: exopolysaccharide
annotated property: has_related_synonym
annotated target: extracellular polymeric substances
database_cross_reference: ChEBI

indole skeleton
type: Class
subclass of: organic heterobicyclic ring
definition: A mancude heterobicyclic organic group consisting of a benzene ring fused to a pyrrole ring.
charge: 0
formula: C8N
mass: 110.09230
monoisotopicmass: 110.00307
smiles: C1(=C(C(=C2C(=C1*)N(C(=C2*)*)*)*)*)*
has OBO namespace: chebi_ontology
id: CHEBI:73398
in_subset: 3 STAR

organic heterobicyclic ring
type: Class
subclass of: cyclic organic group
definition: A bicyclic organic group that contains both carbon and hetero atoms.
has OBO namespace: chebi_ontology
has_related_synonym: organic heterobicyclic rings
id: CHEBI:73541
in_subset: 3 STAR

Axiom
annotated source: organic heterobicyclic ring
annotated property: has_related_synonym
annotated target: organic heterobicyclic rings
database_cross_reference: ChEBI

eukaryotic metabolite
type: Class
subclass of: metabolite
definition: Any metabolite produced during a metabolic reaction in eukaryotes, the taxon that include members of the fungi, plantae and animalia kingdoms.
has OBO namespace: chebi_ontology
has_related_synonym: eukaryotic metabolites
id: CHEBI:75763
in_subset: 3 STAR

Axiom
annotated source: eukaryotic metabolite
annotated property: has_related_synonym
annotated target: eukaryotic metabolites
database_cross_reference: ChEBI

animal metabolite
type: Class
subclass of: eukaryotic metabolite
definition: Any eukaryotic metabolite produced during a metabolic reaction in animals that include diverse creatures from sponges, insects to mammals.
has alternative id: CHEBI:77721
has alternative id: CHEBI:77743
has OBO namespace: chebi_ontology
has_related_synonym: animal metabolites
id: CHEBI:75767
in_subset: 3 STAR

Axiom
annotated source: animal metabolite
annotated property: has_related_synonym
annotated target: animal metabolites
database_cross_reference: ChEBI

mammalian metabolite
type: Class
subclass of: animal metabolite
definition: Any animal metabolite produced during a metabolic reaction in mammals.
has alternative id: CHEBI:77464
has alternative id: CHEBI:77744
has OBO namespace: chebi_ontology
has_related_synonym: mammalian metabolites
id: CHEBI:75768
in_subset: 3 STAR

Axiom
annotated source: mammalian metabolite
annotated property: has_related_synonym
annotated target: mammalian metabolites
database_cross_reference: ChEBI

mouse metabolite
type: Class
subclass of: mammalian metabolite
definition: Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).
has OBO namespace: chebi_ontology
has_related_synonym: Mus musculus metabolite
has_related_synonym: Mus musculus metabolites
has_related_synonym: mouse metabolites
id: CHEBI:75771
in_subset: 3 STAR

Axiom
annotated source: mouse metabolite
annotated property: has_related_synonym
annotated target: Mus musculus metabolite
database_cross_reference: ChEBI

Axiom
annotated source: mouse metabolite
annotated property: has_related_synonym
annotated target: Mus musculus metabolites
database_cross_reference: ChEBI

Axiom
annotated source: mouse metabolite
annotated property: has_related_synonym
annotated target: mouse metabolites
database_cross_reference: ChEBI

Saccharomyces cerevisiae metabolite
type: Class
subclass of: fungal metabolite
definition: Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae).
has alternative id: CHEBI:76949
has alternative id: CHEBI:76951
has OBO namespace: chebi_ontology
has_related_synonym: S. cerevisiae metabolite
has_related_synonym: S. cerevisiae metabolites
has_related_synonym: S. cerevisiae secondary metabolite
has_related_synonym: S. cerevisiae secondary metabolites
has_related_synonym: Saccharomyces cerevisiae metabolites
has_related_synonym: Saccharomyces cerevisiae secondary metabolites
has_related_synonym: baker's yeast metabolite
has_related_synonym: baker's yeast metabolites
has_related_synonym: baker's yeast secondary metabolite
has_related_synonym: baker's yeast secondary metabolites
id: CHEBI:75772
in_subset: 3 STAR

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: S. cerevisiae metabolite
database_cross_reference: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: S. cerevisiae metabolites
database_cross_reference: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: S. cerevisiae secondary metabolite
database_cross_reference: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: S. cerevisiae secondary metabolites
database_cross_reference: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: Saccharomyces cerevisiae metabolites
database_cross_reference: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: Saccharomyces cerevisiae secondary metabolites
database_cross_reference: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: baker's yeast metabolite
database_cross_reference: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: baker's yeast metabolites
database_cross_reference: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: baker's yeast secondary metabolite
database_cross_reference: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: baker's yeast secondary metabolites
database_cross_reference: ChEBI

prokaryotic metabolite
type: Class
subclass of: metabolite
definition: Any metabolite produced during a metabolic reaction in prokaryotes, the taxon that include members of domains such as the bacteria and archaea.
has OBO namespace: chebi_ontology
has_related_synonym: prokaryotic metabolites
id: CHEBI:75787
in_subset: 3 STAR

Axiom
annotated source: prokaryotic metabolite
annotated property: has_related_synonym
annotated target: prokaryotic metabolites
database_cross_reference: ChEBI

xenobiotic metabolite
type: Class
subclass of: metabolite
definition: Any metabolite produced by metabolism of a xenobiotic compound.
has OBO namespace: chebi_ontology
has_related_synonym: xenobiotic metabolites
id: CHEBI:76206
in_subset: 3 STAR

Axiom
annotated source: xenobiotic metabolite
annotated property: has_related_synonym
annotated target: xenobiotic metabolites
database_cross_reference: ChEBI

greenhouse gas
type: Class
subclass of: chemical role
definition: A gas in an atmosphere that absorbs and emits radiation within the thermal infrared range, so contributing to the 'greenhouse effect'.
database_cross_reference: Wikipedia:Greenhouse_gas
has OBO namespace: chebi_ontology
has_related_synonym: greenhouse gases
id: CHEBI:76413
in_subset: 3 STAR

Axiom
annotated source: greenhouse gas
annotated property: has_related_synonym
annotated target: greenhouse gases
database_cross_reference: ChEBI

propellant
type: Class
subclass of: application
definition: A compressed gas or liquid with a boiling point lower than room temperature which to used to propel and dispense liquids such as deodorants, insecticides, paints, etc. from aerosol cans.
database_cross_reference: PMID:22519407
database_cross_reference: PMID:24001847
has OBO namespace: chebi_ontology
has_related_synonym: propellants
id: CHEBI:76414
in_subset: 3 STAR

Axiom
annotated source: propellant
annotated property: database_cross_reference
annotated target: PMID:22519407
source: Europe PMC

Axiom
annotated source: propellant
annotated property: database_cross_reference
annotated target: PMID:24001847
source: Europe PMC

Axiom
annotated source: propellant
annotated property: has_related_synonym
annotated target: propellants
database_cross_reference: ChEBI

EC 1.* (oxidoreductase) inhibitor
type: Class
subclass of: enzyme inhibitor
definition: An enzyme inhibitor which interferes with the action of an oxidoreductase (EC 1.*.*.*).
database_cross_reference: Wikipedia:Oxidoreductase
has OBO namespace: chebi_ontology
has_related_synonym: EC 1.* (oxidoreductase) inhibitors
has_related_synonym: EC 1.* inhibitor
has_related_synonym: EC 1.* inhibitors
has_related_synonym: oxidoreductase (EC 1.*) inhibitor
has_related_synonym: oxidoreductase (EC 1.*) inhibitors
has_related_synonym: oxidoreductase inhibitor
has_related_synonym: oxidoreductase inhibitors
id: CHEBI:76725
in_subset: 3 STAR

Axiom
annotated source: EC 1.* (oxidoreductase) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.* (oxidoreductase) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.* (oxidoreductase) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.* inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.* (oxidoreductase) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.* inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.* (oxidoreductase) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase (EC 1.*) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.* (oxidoreductase) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase (EC 1.*) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.* (oxidoreductase) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.* (oxidoreductase) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase inhibitors
database_cross_reference: ChEBI

EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor
type: Class
subclass of: EC 1.* (oxidoreductase) inhibitor
definition: An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on a heme group of donors (EC 1.9.*.*).
has OBO namespace: chebi_ontology
has_related_synonym: EC 1.9.* (oxidoreductase acting on a heme group of donors) inhibitor
has_related_synonym: EC 1.9.* (oxidoreductase acting on a heme group of donors) inhibitors
has_related_synonym: EC 1.9.* (oxidoreductase acting on donor heme group) inhibitors
has_related_synonym: EC 1.9.* inhibitor
has_related_synonym: EC 1.9.* inhibitors
has_related_synonym: oxidoreductase acting on a heme group of donors (EC 1.9.*) inhibitor
has_related_synonym: oxidoreductase acting on a heme group of donors (EC 1.9.*) inhibitors
id: CHEBI:76736
in_subset: 3 STAR

Axiom
annotated source: EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.9.* (oxidoreductase acting on a heme group of donors) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.9.* (oxidoreductase acting on a heme group of donors) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.9.* (oxidoreductase acting on donor heme group) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.9.* inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.9.* inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase acting on a heme group of donors (EC 1.9.*) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase acting on a heme group of donors (EC 1.9.*) inhibitors
database_cross_reference: ChEBI

EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor
type: Class
subclass of: EC 1.* (oxidoreductase) inhibitor
definition: An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on hydrogen as donors (EC 1.14.*.*).
has OBO namespace: chebi_ontology
has_related_synonym: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitors
has_related_synonym: EC 1.14.* inhibitor
has_related_synonym: EC 1.14.* inhibitors
has_related_synonym: inhibitor of oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*)
has_related_synonym: inhibitor of oxidoreductases acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*)
has_related_synonym: inhibitors of oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*)
has_related_synonym: inhibitors of oxidoreductases acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*)
has_related_synonym: oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*) inhibitor
has_related_synonym: oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*) inhibitors
has_related_synonym: oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen inhibitor
has_related_synonym: oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen inhibitors
id: CHEBI:76741
in_subset: 3 STAR

Axiom
annotated source: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.14.* inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.14.* inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor
annotated property: has_related_synonym
annotated target: inhibitor of oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*)
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor
annotated property: has_related_synonym
annotated target: inhibitor of oxidoreductases acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*)
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor
annotated property: has_related_synonym
annotated target: inhibitors of oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*)
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor
annotated property: has_related_synonym
annotated target: inhibitors of oxidoreductases acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*)
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen inhibitors
database_cross_reference: ChEBI

EC 3.* (hydrolase) inhibitor
type: Class
subclass of: enzyme inhibitor
definition: Any enzyme inhibitor that interferes with the action of a hydrolase (EC 3.*.*.*).
database_cross_reference: Wikipedia:Hydrolase
has OBO namespace: chebi_ontology
has_related_synonym: EC 3.* (hydrolase) inhibitors
has_related_synonym: EC 3.* inhibitor
has_related_synonym: EC 3.* inhibitors
has_related_synonym: EC 3.*.*.* inhibitor
has_related_synonym: EC 3.*.*.* inhibitors
has_related_synonym: hydrolase (EC 3.*) inhibitor
has_related_synonym: hydrolase (EC 3.*) inhibitors
has_related_synonym: hydrolase inhibitor
has_related_synonym: hydrolase inhibitors
id: CHEBI:76759
in_subset: 3 STAR

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.* (hydrolase) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.* inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.* inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.*.*.* inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.*.*.* inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: hydrolase (EC 3.*) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: hydrolase (EC 3.*) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: hydrolase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: hydrolase inhibitors
database_cross_reference: ChEBI

EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
type: Class
subclass of: EC 3.* (hydrolase) inhibitor
definition: Any hydrolase inhibitor that interferes with the action of a hydrolase acting on C-N bonds, other than peptide bonds (EC 3.5.*.*).
has OBO namespace: chebi_ontology
has_related_synonym: EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitor
has_related_synonym: EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitors
has_related_synonym: EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitor
has_related_synonym: EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitors
has_related_synonym: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitors
has_related_synonym: EC 3.5.* inhibitor
has_related_synonym: EC 3.5.* inhibitors
id: CHEBI:76764
in_subset: 3 STAR

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* inhibitors
database_cross_reference: ChEBI

EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
type: Class
subclass of: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
definition: An EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor that interferes with the action of any non-peptide linear amide C-N hydrolase (EC 3.5.1.*).
has OBO namespace: chebi_ontology
has_related_synonym: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitors
has_related_synonym: EC 3.5.1.* inhibitor
has_related_synonym: EC 3.5.1.* inhibitors
has_related_synonym: non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitor
has_related_synonym: non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitors
id: CHEBI:76807
in_subset: 3 STAR

Axiom
annotated source: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.1.* inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.1.* inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitors
database_cross_reference: ChEBI

EC 1.14.14.* (oxidoreductase acting on paired donors, incorporating of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitor
type: Class
subclass of: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor
definition: An EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor that interferes with the action of any such enzyme incorporating one atom of oxygen and using reduced flavin or flavoprotein as donor (EC 1.14.14.*).
has OBO namespace: chebi_ontology
has_related_synonym: EC 1.14.14.* (oxidoreductase acting on paired donors, incorporating of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitors
has_related_synonym: EC 1.14.14.* (oxidoreductase acting on paired donors, with incorporation of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitor
has_related_synonym: EC 1.14.14.* (oxidoreductase acting on paired donors, with incorporation of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitors
has_related_synonym: EC 1.14.14.* inhibitor
has_related_synonym: EC 1.14.14.* inhibitors
has_related_synonym: oxidoreductase acting on paired donors, with incorporation of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor (EC 1.14.14.*) inhibitor
has_related_synonym: oxidoreductase acting on paired donors, with incorporation of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor (EC 1.14.14.*) inhibitors
id: CHEBI:76838
in_subset: 3 STAR

Axiom
annotated source: EC 1.14.14.* (oxidoreductase acting on paired donors, incorporating of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.14.14.* (oxidoreductase acting on paired donors, incorporating of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.* (oxidoreductase acting on paired donors, incorporating of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.14.14.* (oxidoreductase acting on paired donors, with incorporation of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.* (oxidoreductase acting on paired donors, incorporating of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.14.14.* (oxidoreductase acting on paired donors, with incorporation of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.* (oxidoreductase acting on paired donors, incorporating of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.14.14.* inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.* (oxidoreductase acting on paired donors, incorporating of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.14.14.* inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.* (oxidoreductase acting on paired donors, incorporating of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase acting on paired donors, with incorporation of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor (EC 1.14.14.*) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.* (oxidoreductase acting on paired donors, incorporating of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase acting on paired donors, with incorporation of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor (EC 1.14.14.*) inhibitors
database_cross_reference: ChEBI

EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor
type: Class
subclass of: EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor
definition: An EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor that interferes with the action of any such enzyme using oxygen as acceptor (EC 1.9.3.*).
has OBO namespace: chebi_ontology
has_related_synonym: EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitors
has_related_synonym: EC 1.9.3.* inhibitor
has_related_synonym: EC 1.9.3.* inhibitors
has_related_synonym: oxidoreductase acting on donor heme group, oxygen as acceptor (EC 1.9.3.*) inhibitor
has_related_synonym: oxidoreductase acting on donor heme group, oxygen as acceptor (EC 1.9.3.*) inhibitors
id: CHEBI:76870
in_subset: 3 STAR

Axiom
annotated source: EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.9.3.* inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.9.3.* inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase acting on donor heme group, oxygen as acceptor (EC 1.9.3.*) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor
annotated property: has_related_synonym
annotated target: oxidoreductase acting on donor heme group, oxygen as acceptor (EC 1.9.3.*) inhibitors
database_cross_reference: ChEBI

EC 1.14.14.1 (unspecific monooxygenase) inhibitor
type: Class
subclass of: EC 1.14.14.* (oxidoreductase acting on paired donors, incorporating of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitor
definition: An EC 1.14.14.* (oxidoreductase acting on paired donors, incorporating of 1 atom of oxygen, with reduced flavin or flavoprotein as one donor) inhibitor that interferes with the action of an unspecified monooxygenase (EC 1.14.14.1).
has OBO namespace: chebi_ontology
has_related_synonym: EC 1.14.14.1 (unspecific monooxygenase) inhibitors
has_related_synonym: EC 1.14.14.1 inhibitor
has_related_synonym: EC 1.14.14.1 inhibitors
has_related_synonym: aryl hydrocarbon hydroxylase inhibitor
has_related_synonym: aryl hydrocarbon hydroxylase inhibitors
has_related_synonym: aryl-4-monooxygenase inhibitor
has_related_synonym: aryl-4-monooxygenase inhibitors
has_related_synonym: flavoprotein monooxygenase inhibitor
has_related_synonym: flavoprotein monooxygenase inhibitors
has_related_synonym: flavoprotein-linked monooxygenase inhibitor
has_related_synonym: flavoprotein-linked monooxygenase inhibitors
has_related_synonym: microsomal P-450 inhibitor
has_related_synonym: microsomal P-450 inhibitors
has_related_synonym: microsomal monooxygenase inhibitor
has_related_synonym: microsomal monooxygenase inhibitors
has_related_synonym: substrate,reduced-flavoprotein:oxygen oxidoreductase (RH-hydroxylating or -epoxidising) inhibitor
has_related_synonym: substrate,reduced-flavoprotein:oxygen oxidoreductase (RH-hydroxylating or -epoxidising) inhibitors
has_related_synonym: unspecific monooxygenase (EC 1.14.14.1) inhibitor
has_related_synonym: unspecific monooxygenase (EC 1.14.14.1) inhibitors
has_related_synonym: unspecific monooxygenase inhibitor
has_related_synonym: unspecific monooxygenase inhibitors
has_related_synonym: xenobiotic monooxygenase inhibitor
has_related_synonym: xenobiotic monooxygenase inhibitors
id: CHEBI:76898
in_subset: 3 STAR

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.14.14.1 (unspecific monooxygenase) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.14.14.1 inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: EC 1.14.14.1 inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: aryl hydrocarbon hydroxylase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: aryl hydrocarbon hydroxylase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: aryl-4-monooxygenase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: aryl-4-monooxygenase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: flavoprotein monooxygenase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: flavoprotein monooxygenase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: flavoprotein-linked monooxygenase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: flavoprotein-linked monooxygenase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: microsomal P-450 inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: microsomal P-450 inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: microsomal monooxygenase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: microsomal monooxygenase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: substrate,reduced-flavoprotein:oxygen oxidoreductase (RH-hydroxylating or -epoxidising) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: substrate,reduced-flavoprotein:oxygen oxidoreductase (RH-hydroxylating or -epoxidising) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: unspecific monooxygenase (EC 1.14.14.1) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: unspecific monooxygenase (EC 1.14.14.1) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: unspecific monooxygenase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: unspecific monooxygenase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: xenobiotic monooxygenase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 1.14.14.1 (unspecific monooxygenase) inhibitor
annotated property: has_related_synonym
annotated target: xenobiotic monooxygenase inhibitors
database_cross_reference: ChEBI

plant metabolite
type: Class
subclass of: eukaryotic metabolite
definition: Any eukaryotic metabolite produced during a metabolic reaction in plants, the kingdom that include flowering plants, conifers and other gymnosperms.
has alternative id: CHEBI:75766
has alternative id: CHEBI:76925
has OBO namespace: chebi_ontology
has_related_synonym: plant metabolites
has_related_synonym: plant secondary metabolites
id: CHEBI:76924
in_subset: 3 STAR

Axiom
annotated source: plant metabolite
annotated property: has_related_synonym
annotated target: plant metabolites
database_cross_reference: ChEBI

Axiom
annotated source: plant metabolite
annotated property: has_related_synonym
annotated target: plant secondary metabolites
database_cross_reference: ChEBI

pathway inhibitor
type: Class
subclass of: enzyme inhibitor
definition: An enzyme inhibitor that interferes with one or more steps in a metabolic pathway.
has OBO namespace: chebi_ontology
has_related_synonym: metabolic pathway inhibitor
has_related_synonym: metabolic pathway inhibitors
has_related_synonym: pathway inhibitors
id: CHEBI:76932
in_subset: 3 STAR

Axiom
annotated source: pathway inhibitor
annotated property: has_related_synonym
annotated target: metabolic pathway inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: pathway inhibitor
annotated property: has_related_synonym
annotated target: metabolic pathway inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: pathway inhibitor
annotated property: has_related_synonym
annotated target: pathway inhibitors
database_cross_reference: ChEBI

fungal metabolite
type: Class
subclass of: eukaryotic metabolite
definition: Any eukaryotic metabolite produced during a metabolic reaction in fungi, the kingdom that includes microorganisms such as the yeasts and moulds.
has alternative id: CHEBI:75765
has alternative id: CHEBI:76947
has OBO namespace: chebi_ontology
has_related_synonym: fungal metabolites
id: CHEBI:76946
in_subset: 3 STAR

Axiom
annotated source: fungal metabolite
annotated property: has_related_synonym
annotated target: fungal metabolites
database_cross_reference: ChEBI

human xenobiotic metabolite
type: Class
subclass of: xenobiotic metabolite
subclass of: human metabolite
definition: Any human metabolite produced by metabolism of a xenobiotic compound in humans.
has OBO namespace: chebi_ontology
has_related_synonym: human xenobiotic metabolites
id: CHEBI:76967
in_subset: 3 STAR

Axiom
annotated source: human xenobiotic metabolite
annotated property: has_related_synonym
annotated target: human xenobiotic metabolites
database_cross_reference: ChEBI

bacterial metabolite
type: Class
subclass of: prokaryotic metabolite
definition: Any prokaryotic metabolite produced during a metabolic reaction in bacteria.
has alternative id: CHEBI:75760
has alternative id: CHEBI:76970
has OBO namespace: chebi_ontology
id: CHEBI:76969
in_subset: 3 STAR

Escherichia coli metabolite
type: Class
subclass of: bacterial metabolite
definition: Any bacterial metabolite produced during a metabolic reaction in Escherichia coli.
has OBO namespace: chebi_ontology
has_related_synonym: E.coli metabolite
has_related_synonym: E.coli metabolites
has_related_synonym: Escherichia coli metabolites
id: CHEBI:76971
in_subset: 3 STAR

Axiom
annotated source: Escherichia coli metabolite
annotated property: has_related_synonym
annotated target: E.coli metabolite
database_cross_reference: ChEBI

Axiom
annotated source: Escherichia coli metabolite
annotated property: has_related_synonym
annotated target: E.coli metabolites
database_cross_reference: ChEBI

Axiom
annotated source: Escherichia coli metabolite
annotated property: has_related_synonym
annotated target: Escherichia coli metabolites
database_cross_reference: ChEBI

human metabolite
type: Class
subclass of: mammalian metabolite
definition: Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens).
has alternative id: CHEBI:75770
has alternative id: CHEBI:77123
has OBO namespace: chebi_ontology
has_related_synonym: H. sapiens metabolite
has_related_synonym: H. sapiens metabolites
has_related_synonym: Homo sapiens metabolite
has_related_synonym: Homo sapiens metabolites
id: CHEBI:77746
in_subset: 3 STAR

Axiom
annotated source: human metabolite
annotated property: has_related_synonym
annotated target: H. sapiens metabolite
database_cross_reference: ChEBI

Axiom
annotated source: human metabolite
annotated property: has_related_synonym
annotated target: H. sapiens metabolites
database_cross_reference: ChEBI

Axiom
annotated source: human metabolite
annotated property: has_related_synonym
annotated target: Homo sapiens metabolite
database_cross_reference: ChEBI

Axiom
annotated source: human metabolite
annotated property: has_related_synonym
annotated target: Homo sapiens metabolites
database_cross_reference: ChEBI

EC 3.5.1.4 (amidase) inhibitor
type: Class
subclass of: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
definition: An EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor that interferes with the action of amidase (EC 3.5.1.4).
database_cross_reference: Wikipedia:Amidase
has OBO namespace: chebi_ontology
has_related_synonym: EC 3.5.1.4 (amidase) inhibitors
has_related_synonym: EC 3.5.1.4 inhibitor
has_related_synonym: EC 3.5.1.4 inhibitors
has_related_synonym: N-acetylaminohydrolase inhibitor
has_related_synonym: N-acetylaminohydrolase inhibitors
has_related_synonym: acylamidase inhibitor
has_related_synonym: acylamidase inhibitors
has_related_synonym: acylamide amidohydrolase inhibitor
has_related_synonym: acylamide amidohydrolase inhibitors
has_related_synonym: amidase (EC 3.5.1.4) inhibitor
has_related_synonym: amidase (EC 3.5.1.4) inhibitors
has_related_synonym: amidase inhibitor
has_related_synonym: amidase inhibitors
has_related_synonym: amidohydrolase inhibitor
has_related_synonym: amidohydrolase inhibitors
has_related_synonym: deaminase inhibitor
has_related_synonym: deaminase inhibitors
has_related_synonym: fatty acylamidase inhibitor
has_related_synonym: fatty acylamidase inhibitors
id: CHEBI:77941
in_subset: 3 STAR

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.1.4 (amidase) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.1.4 inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.1.4 inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: N-acetylaminohydrolase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: N-acetylaminohydrolase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: acylamidase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: acylamidase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: acylamide amidohydrolase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: acylamide amidohydrolase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: amidase (EC 3.5.1.4) inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: amidase (EC 3.5.1.4) inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: amidase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: amidase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: amidohydrolase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: amidohydrolase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: deaminase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: deaminase inhibitors
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: fatty acylamidase inhibitor
database_cross_reference: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: fatty acylamidase inhibitors
database_cross_reference: ChEBI

food packaging gas
type: Class
subclass of: food additive
definition: A food additive that is a (generally inert) gas which is used to envelop foodstuffs during packing and so protect them from unwanted chemical reactions such as food spoilage or oxidation during subsequent transport and storage. The term includes propellant gases, used to expel foods from a container.
database_cross_reference: Wikipedia:Packaging_gas
has OBO namespace: chebi_ontology
has_related_synonym: food packaging gases
id: CHEBI:77974
in_subset: 3 STAR

Axiom
annotated source: food packaging gas
annotated property: has_related_synonym
annotated target: food packaging gases
database_cross_reference: ChEBI

food propellant
type: Class
subclass of: food additive
subclass of: propellant
definition: A propellant that is used to expel foods from an aerosol container.
has OBO namespace: chebi_ontology
has_related_synonym: food propellants
id: CHEBI:78017
in_subset: 3 STAR

Axiom
annotated source: food propellant
annotated property: has_related_synonym
annotated target: food propellants
database_cross_reference: ChEBI

food component
type: Class
subclass of: physiological role
definition: A physiological role played by any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants.
definition: Any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants.
has OBO namespace: chebi_ontology
has_related_synonym: dietary component
has_related_synonym: dietary components
has_related_synonym: food components
id: CHEBI:78295
in_subset: 3 STAR

Axiom
annotated source: food component
annotated property: has_related_synonym
annotated target: dietary component
database_cross_reference: ChEBI

Axiom
annotated source: food component
annotated property: has_related_synonym
annotated target: dietary components
database_cross_reference: ChEBI

Axiom
annotated source: food component
annotated property: has_related_synonym
annotated target: food components
database_cross_reference: ChEBI

refrigerant
type: Class
subclass of: application
definition: A substance used in a thermodynamic heat pump cycle or refrigeration cycle that undergoes a phase change from a gas to a liquid and back. Refrigerants are used in air-conditioning systems and freezers or refrigerators and are assigned a "R" number (by ASHRAE - formerly the American Society of Heating, Refrigerating and Air Conditioning Engineers), which is determined systematically according to their molecular structure.
database_cross_reference: Wikipedia:Refrigerant
has OBO namespace: chebi_ontology
has_related_synonym: refrigerants
id: CHEBI:78433
in_subset: 3 STAR

Axiom
annotated source: refrigerant
annotated property: has_related_synonym
annotated target: refrigerants
database_cross_reference: ChEBI

alpha-amino acid zwitterion
type: Class
subclass of: amino acid zwitterion
subclass of: Restriction
  on property: is tautomer of
  some values from: alpha-amino acid
definition: An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3.
charge: 0
formula: C2H4NO2R
mass: 74.059
monoisotopicmass: 74.02420
smiles: [NH3+]C([*])C([O-])=O
has alternative id: CHEBI:83409
database_cross_reference: MetaCyc:Alpha-Amino-Acids
has OBO namespace: chebi_ontology
has_related_synonym: an alpha-amino acid
id: CHEBI:78608
in_subset: 3 STAR

Axiom
annotated source: alpha-amino acid zwitterion
annotated property: database_cross_reference
annotated target: MetaCyc:Alpha-Amino-Acids
source: SUBMITTER

Axiom
annotated source: alpha-amino acid zwitterion
annotated property: has_related_synonym
annotated target: an alpha-amino acid
database_cross_reference: UniProt

carbohydrates and carbohydrate derivatives
type: Class
subclass of: organooxygen compound
definition: Any organooxygen compound that is a polyhydroxy-aldehyde or -ketone, or a compound derived from one. Carbohydrates contain only carbon, hydrogen and oxygen and usually have an empirical formula Cm(H2O)n; carbohydrate derivatives may contain other elements by substitution or condensation.
has OBO namespace: chebi_ontology
has_related_synonym: carbohydrates and derivatives
has_related_synonym: carbohydrates and their derivatives
id: CHEBI:78616
in_subset: 3 STAR

Axiom
annotated source: carbohydrates and carbohydrate derivatives
annotated property: has_related_synonym
annotated target: carbohydrates and derivatives
database_cross_reference: ChEBI

Axiom
annotated source: carbohydrates and carbohydrate derivatives
annotated property: has_related_synonym
annotated target: carbohydrates and their derivatives
database_cross_reference: ChEBI

trivalent inorganic anion
type: Class
subclass of: inorganic anion
definition: Any inorganic anion with a valency of three.
has OBO namespace: chebi_ontology
has_related_synonym: trivalent inorganic anions
id: CHEBI:79387
in_subset: 3 STAR

Axiom
annotated source: trivalent inorganic anion
annotated property: has_related_synonym
annotated target: trivalent inorganic anions
database_cross_reference: ChEBI

divalent inorganic anion
type: Class
subclass of: inorganic anion
definition: Any inorganic anion with a valency of two.
has OBO namespace: chebi_ontology
has_related_synonym: divalent inorganic anions
id: CHEBI:79388
in_subset: 3 STAR

Axiom
annotated source: divalent inorganic anion
annotated property: has_related_synonym
annotated target: divalent inorganic anions
database_cross_reference: ChEBI

monovalent inorganic anion
type: Class
subclass of: inorganic anion
definition: Any inorganic anion with a valency of one.
has OBO namespace: chebi_ontology
has_related_synonym: monovalent inorganic anions
id: CHEBI:79389
in_subset: 3 STAR

Axiom
annotated source: monovalent inorganic anion
annotated property: has_related_synonym
annotated target: monovalent inorganic anions
database_cross_reference: ChEBI

chlorophyllide a(2-)
type: Class
subclass of: chlorophyllide(2-)
subclass of: Restriction
  on property: is conjugate base of
  some values from: chlorophyllide a(1-)
definition: A cyclic tetrapyrrole anion arising from deprotonation of the carboxy group and the C-21 posiiton of chlorophyllide a. It is the major microspecies at pH 7.3 (according to Marvin v 6.2.0.).
charge: -2
formula: C35H32MgN4O5
inchi: InChI=1S/C35H35N4O5.Mg/c1-8-19-15(3)22-12-24-17(5)21(10-11-28(40)41)32(38-24)30-31(35(43)44-7)34(42)29-18(6)25(39-33(29)30)14-27-20(9-2)16(4)23(37-27)13-26(19)36-22;/h8,12-14,17,21H,1,9-11H2,2-7H3,(H3,36,37,38,39,40,41,42);/q-1;+2/p-3/t17-,21-;/m0./s1
inchikey: IZOAGQOHKWGYKF-PVMVIUQGSA-K
mass: 612.95800
monoisotopicmass: 612.22341
smiles: CCC1=C(C)C2=[N+]3C1=Cc1c(C)c4C(=O)[C-](C(=O)OC)C5=C6[C@@H](CCC([O-])=O)[C@H](C)C7=[N+]6[Mg--]3(n1c45)n1c(=C7)c(C)c(C=C)c1=C2
has OBO namespace: chebi_ontology
has_related_synonym: chlorophyllide a
id: CHEBI:83348
in_subset: 3 STAR

Axiom
annotated source: chlorophyllide a(2-)
annotated property: has_related_synonym
annotated target: chlorophyllide a
database_cross_reference: UniProt

hydroxyindoles
type: Class
subclass of: indoles
subclass of: organic hydroxy compound
definition: Any member of the class of indoles carrying at least one hydroxy group.
has OBO namespace: chebi_ontology
id: CHEBI:84729
in_subset: 3 STAR

algal metabolite
type: Class
subclass of: eukaryotic metabolite
definition: Any eukaryotic metabolite produced during a metabolic reaction in algae including unicellular organisms like chlorella and diatoms to multicellular organisms like giant kelps and brown algae.
has OBO namespace: chebi_ontology
has_related_synonym: algal metabolites
id: CHEBI:84735
in_subset: 3 STAR

Axiom
annotated source: algal metabolite
annotated property: has_related_synonym
annotated target: algal metabolites
database_cross_reference: ChEBI

cell
type: Class
subclass of: Restriction
  on property: only in taxon
  some values from: NCBITaxon_131567
disjoint with: GO_0031012
disjoint with: GO_0032991
disjoint with: GO_0043226
definition: A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
IAO_0000412: cl.owl
database_cross_reference: CALOHA:TS-2035
database_cross_reference: FMA:68646
database_cross_reference: GO:0005623
database_cross_reference: KUPO:0000002
database_cross_reference: VHOG:0001533
database_cross_reference: WBbt:0004017
database_cross_reference: XAO:0003012
has OBO namespace: cell
id: CL:0000000
in_subset: upper level
comment: The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).

Axiom
annotated source: cell
annotated property: definition
annotated target: A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
database_cross_reference: CARO:mah

native cell
type: Class
subclass of: cell
definition: A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment).
database_cross_reference: CARO:0000013
has_narrow_synonym: cell in vivo
has OBO namespace: cell
id: CL:0000003
in_subset: upper level
comment: To accommodate unicellular organisms better, 'cell in vivo' has been re-labeled 'native cell' to better represent its intended meaning - that is, that it is a cell in the context of a multicellular organism or in a natural environment. 'Native' is intended to contrast with 'in vitro', which refers to cells or other biological entities that have been intentionally placed in a controlled, non-natural setting for the purpose of study or manipulation. (MAH 1.12.12).

Axiom
annotated source: native cell
annotated property: definition
annotated target: A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment).
database_cross_reference: CARO:mah

fibroblast neural crest derived
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: develops_from
    some values from: migratory neural crest cell
subclass of: fibroblast
subclass of: Restriction
  on property: develops_from
  some values from: migratory cranial neural crest cell
definition: Any fibroblast that is deriived from the neural crest.
has OBO namespace: cell
id: CL:0000005

Axiom
annotated source: fibroblast neural crest derived
annotated property: definition
annotated target: Any fibroblast that is deriived from the neural crest.
database_cross_reference: https://orcid.org/0000-0001-5208-3432

neuronal receptor cell
type: Class
equivalent class: Class
  intersection of: sensory receptor cell
  intersection of: neuron
  intersection of: Restriction
    on property: capable of
    some values from: GO_0050906
subclass of: sensory neuron
subclass of: sensory receptor cell
has_exact_synonym: neuronal receptor cell (sensu Animalia)
has OBO namespace: cell
id: CL:0000006

early embryonic cell (metazoa)
type: Class
subclass of: embryonic cell (metazoa)
definition: A cell found in the embryo before the formation of all the gem layers is complete.
has OBO namespace: cell
id: CL:0000007

Axiom
annotated source: early embryonic cell (metazoa)
annotated property: definition
annotated target: A cell found in the embryo before the formation of all the gem layers is complete.
database_cross_reference: GOC:tfm

migratory cranial neural crest cell
type: Class
subclass of: migratory neural crest cell
definition: Cell that is part of the migratory cranial neural crest population. Migratory cranial neural crest cells develop from premigratory cranial neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
has OBO namespace: cell
id: CL:0000008

Axiom
annotated source: migratory cranial neural crest cell
annotated property: definition
annotated target: Cell that is part of the migratory cranial neural crest population. Migratory cranial neural crest cells develop from premigratory cranial neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
database_cross_reference: ZFA:0007091
database_cross_reference: https://orcid.org/0000-0001-5208-3432

migratory trunk neural crest cell
type: Class
subclass of: migratory neural crest cell
definition: Cell that is part of the migratory trunk neural crest population. Migratory trunk neural crest cells develop from premigratory trunk neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
has OBO namespace: cell

Axiom
annotated source: migratory trunk neural crest cell
annotated property: definition
annotated target: Cell that is part of the migratory trunk neural crest population. Migratory trunk neural crest cells develop from premigratory trunk neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
database_cross_reference: ZFA:0007095
database_cross_reference: https://orcid.org/0000-0001-5208-3432

germ line stem cell
type: Class
equivalent class: Class
  intersection of: germ line cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0017145
subclass of: stem cell
subclass of: germ line cell
has_exact_synonym: germline stem cell
has OBO namespace: cell

Axiom
annotated source: germ line stem cell
annotated property: subClassOf
annotated target: stem cell
is inferred: true

Axiom
annotated source: germ line stem cell
annotated property: subClassOf
annotated target: germ line cell
is inferred: true

smooth muscle cell neural crest derived
type: Class
equivalent class: Class
  intersection of: smooth muscle cell
  intersection of: Restriction
    on property: develops_from
    some values from: migratory neural crest cell
subclass of: smooth muscle cell
subclass of: Restriction
  on property: develops_from
  some values from: migratory cranial neural crest cell
definition: A smooth muscle cell derived from the neural crest.
has OBO namespace: cell
id: CL:0000027

Axiom
annotated source: smooth muscle cell neural crest derived
annotated property: subClassOf
annotated target: smooth muscle cell
is inferred: true

Axiom
annotated source: smooth muscle cell neural crest derived
annotated property: definition
annotated target: A smooth muscle cell derived from the neural crest.
database_cross_reference: https://orcid.org/0000-0001-5208-3432

neural crest derived neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: develops_from
    some values from: migratory neural crest cell
subclass of: neuron
subclass of: Restriction
  on property: develops_from
  some values from: neural crest derived neuroblast
has_exact_synonym: neuron neural crest derived
has OBO namespace: cell
id: CL:0000029

Axiom
annotated source: neural crest derived neuron
annotated property: subClassOf
annotated target: neuron
is inferred: true

glioblast
type: Class
subclass of: anatomical entity
subclass of: non-terminally differentiated cell
subclass of: Restriction
  on property: develops_from
  some values from: neurectodermal cell
database_cross_reference: FBbt:00005145
has OBO namespace: cell
id: CL:0000030

neuroblast (sensu Vertebrata)
type: Class
subclass of: non-terminally differentiated cell
subclass of: animal cell
subclass of: Restriction
  on property: only in taxon
  some values from: NCBITaxon 7742
definition: A cell that will develop into a neuron often after a migration phase.
has alternative id: CL:0000337
database_cross_reference: BTO:0000930
database_cross_reference: FMA:70563
has_exact_synonym: neuroblast
has OBO namespace: cell
id: CL:0000031

Axiom
annotated source: neuroblast (sensu Vertebrata)
annotated property: definition
annotated target: A cell that will develop into a neuron often after a migration phase.
database_cross_reference: GOC:NV
database_cross_reference: http://en.wikipedia.org/wiki/Neuroblast

stem cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0017145
subclass of: precursor cell
subclass of: Restriction
  on property: in taxon
  some values from: NCBITaxon_33208
subclass of: Restriction
  on property: capable of
  some values from: GO_0017145
definition: A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
database_cross_reference: CALOHA:TS-2086
database_cross_reference: FMA:63368
has_exact_synonym: animal stem cell
has OBO namespace: cell
id: CL:0000034
comment: This term applies to metazoan. For plant stem cells, consider using PO:0004011 ‘initial cell’ or its parent PO:0004010 ‘meristematic cell’.

Axiom
annotated source: stem cell
annotated property: definition
annotated target: A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
database_cross_reference: GOC:tfm
database_cross_reference: MESH:A11.872

single fate stem cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001400
  intersection of: Restriction
    on property: capable of
    some values from: GO_0017145
subclass of: somatic stem cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0001400
definition: A stem cell that self-renews as well as give rise to a single mature cell type.
database_cross_reference: FMA:70569
has_exact_synonym: unipotent stem cell
has_exact_synonym: unipotential stem cell
has OBO namespace: cell

Axiom
annotated source: single fate stem cell
annotated property: definition
annotated target: A stem cell that self-renews as well as give rise to a single mature cell type.
database_cross_reference: GOC:tfm

hematopoietic stem cell
type: Class
equivalent class: Class
  intersection of: hematopoietic cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0002244
  intersection of: Restriction
    on property: capable of
    some values from: GO_0048103
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001002
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001004
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001012
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001020
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001024
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001083
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001084
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001289
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001839
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001889
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000002978
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000002981
subclass of: somatic stem cell
subclass of: hematopoietic precursor cell
subclass of: progenitor cell
subclass of: Restriction
  on property: develops_from
  some values from: angioblastic mesenchymal cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0002244
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001002
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001004
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001012
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001020
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001024
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001083
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001084
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001289
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001839
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001889
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000002978
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000002981
definition: A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. Hematopoietic stem cells lack cell markers of effector cells (lin-negative). Lin-negative is defined by lacking one or more of the following cell surface markers: CD2, CD3 epsilon, CD4, CD5 ,CD8 alpha chain, CD11b, CD14, CD19, CD20, CD56, ly6G, ter119.
database_cross_reference: BTO:0000725
database_cross_reference: CALOHA:TS-0448
database_cross_reference: FMA:70337
database_cross_reference: FMA:86475
database_cross_reference: VHOG:0001485
has_exact_synonym: HSC
has_exact_synonym: blood forming stem cell
has_exact_synonym: hemopoietic stem cell
has OBO namespace: cell
has_related_synonym: colony forming unit hematopoietic
id: CL:0000037
comment: Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative.

Axiom
annotated source: hematopoietic stem cell
annotated property: definition
annotated target: A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. Hematopoietic stem cells lack cell markers of effector cells (lin-negative). Lin-negative is defined by lacking one or more of the following cell surface markers: CD2, CD3 epsilon, CD4, CD5 ,CD8 alpha chain, CD11b, CD14, CD19, CD20, CD56, ly6G, ter119.
database_cross_reference: GOC:add
database_cross_reference: GOC:dsd
database_cross_reference: GOC:tfm
database_cross_reference: PMID:19022770
database_cross_reference: http://en.wikipedia.org/wiki/Hematopoietic_stem_cell

erythroid progenitor cell
type: Class
subclass of: erythroid lineage cell
subclass of: myeloid lineage restricted progenitor cell
subclass of: Restriction
  on property: develops_from
  some values from: megakaryocyte-erythroid progenitor cell
definition: A progenitor cell committed to the erythroid lineage.
database_cross_reference: BTO:0004911
has OBO namespace: cell
has_related_synonym: BFU-E
has_related_synonym: CFU-E
has_related_synonym: blast forming unit erythroid
has_related_synonym: burst forming unit erythroid
has_related_synonym: colony forming unit erythroid
has_related_synonym: erythroid stem cell
id: CL:0000038

Axiom
annotated source: erythroid progenitor cell
annotated property: subClassOf
annotated target: myeloid lineage restricted progenitor cell
is inferred: true

Axiom
annotated source: erythroid progenitor cell
annotated property: definition
annotated target: A progenitor cell committed to the erythroid lineage.
database_cross_reference: GOC:add
database_cross_reference: ISBN:0721601464

germ line cell
type: Class
subclass of: material entity
subclass of: native cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0022414
disjoint with: somatic cell
definition: A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring.
has OBO namespace: cell
id: CL:0000039
in_subset: upper level
comment: Originally this term had some plant germ line cell children.

Axiom
annotated source: germ line cell
annotated property: definition
annotated target: A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0721662544

neuronal stem cell
type: Class
equivalent class: Class
  intersection of: multi fate stem cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001017
subclass of: anatomical entity
subclass of: multi fate stem cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001017
subclass of: Restriction
  on property: develops_from
  some values from: neurectodermal cell
definition: Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors.
database_cross_reference: BTO:0002881
database_cross_reference: CALOHA:TS-2360
database_cross_reference: FMA:86684
has_exact_synonym: NSC
has_exact_synonym: neural stem cell
has OBO namespace: cell

Axiom
annotated source: neuronal stem cell
annotated property: subClassOf
annotated target: multi fate stem cell
is inferred: true

Axiom
annotated source: neuronal stem cell
annotated property: definition
annotated target: Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors.
database_cross_reference: GOC:tfm
database_cross_reference: MESH:D058953
database_cross_reference: PMID:15247488
database_cross_reference: http://en.wikipedia.org/wiki/Neural_stem_cell

multi fate stem cell
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001402
  intersection of: Restriction
    on property: capable of
    some values from: GO_0017145
subclass of: stem cell
subclass of: somatic cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0001402
definition: A stem cell that can give rise to multiple lineages of cells.
database_cross_reference: FMA:84789
has_exact_synonym: multi-fate stem cell
has_exact_synonym: multifate stem cell
has_exact_synonym: multipotent cell
has_exact_synonym: multipotent stem cell
has OBO namespace: cell
id: CL:0000048

Axiom
annotated source: multi fate stem cell
annotated property: definition
annotated target: A stem cell that can give rise to multiple lineages of cells.
database_cross_reference: GOC:add

common myeloid progenitor
type: Class
subclass of: hematopoietic oligopotent progenitor cell
disjoint with: megakaryocyte-erythroid progenitor cell
definition: A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages.
database_cross_reference: BTO:0004730
has_exact_synonym: CMP
has_exact_synonym: common myeloid precursor
has OBO namespace: cell
has_related_synonym: CFU-GEMM
has_related_synonym: CFU-S
has_related_synonym: colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte
has_related_synonym: multipotential myeloid stem cell
has_related_synonym: myeloid stem cell
has_related_synonym: pluripotent stem cell (bone marrow)
id: CL:0000049
comment: This cell type is intended to be compatible with any vertebrate common myeloid progenitor. For mammalian CMP known to be CD34-positive, please use the term 'common myeloid progenitor, CD34-positive' (CL_0001059).

Axiom
annotated source: common myeloid progenitor
annotated property: subClassOf
annotated target: hematopoietic oligopotent progenitor cell
is inferred: true

Axiom
annotated source: common myeloid progenitor
annotated property: definition
annotated target: A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages.
database_cross_reference: GOC:add
database_cross_reference: ISBN:0878932437
database_cross_reference: MESH:D023461

Axiom
annotated source: common myeloid progenitor
annotated property: has_exact_synonym
annotated target: CMP
database_cross_reference: ISBN:0878932437

Axiom
annotated source: common myeloid progenitor
annotated property: has_related_synonym
annotated target: CFU-GEMM
database_cross_reference: ISBN:0878932437

Axiom
annotated source: common myeloid progenitor
annotated property: has_related_synonym
annotated target: CFU-S
database_cross_reference: ISBN:0878932437

Axiom
annotated source: common myeloid progenitor
annotated property: has_related_synonym
annotated target: colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte
database_cross_reference: ISBN:0878932437

Axiom
annotated source: common myeloid progenitor
annotated property: has_related_synonym
annotated target: multipotential myeloid stem cell
database_cross_reference: ISBN:0878932437

Axiom
annotated source: common myeloid progenitor
annotated property: has_related_synonym
annotated target: myeloid stem cell
database_cross_reference: ISBN:0878932437

Axiom
annotated source: common myeloid progenitor
annotated property: has_related_synonym
annotated target: pluripotent stem cell (bone marrow)
database_cross_reference: ISBN:0878932437

megakaryocyte-erythroid progenitor cell
type: Class
equivalent class: Class
  intersection of: hematopoietic oligopotent progenitor cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0030218
  intersection of: Restriction
    on property: capable of
    some values from: GO_0030219
subclass of: myeloid cell
subclass of: hematopoietic oligopotent progenitor cell
subclass of: progenitor cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0030218
subclass of: Restriction
  on property: capable of
  some values from: GO_0030219
definition: A progenitor cell committed to the megakaryocyte and erythroid lineages.
has_exact_synonym: CFU-EM
has_exact_synonym: CFU-MegE
has_exact_synonym: MEP
has_exact_synonym: Meg/E progenitor
has_exact_synonym: colony forming unit erythroid megakaryocyte
has_exact_synonym: megakaryocyte/erythrocyte progenitor
has_exact_synonym: megakaryocyte/erythroid progenitor cell
has OBO namespace: cell
id: CL:0000050
comment: MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2.

Axiom
annotated source: megakaryocyte-erythroid progenitor cell
annotated property: subClassOf
annotated target: hematopoietic oligopotent progenitor cell
is inferred: true

Axiom
annotated source: megakaryocyte-erythroid progenitor cell
annotated property: definition
annotated target: A progenitor cell committed to the megakaryocyte and erythroid lineages.
database_cross_reference: GOC:add
database_cross_reference: GOC:dsd
database_cross_reference: GOC:tfm
database_cross_reference: MESH:D055015
database_cross_reference: PMID:16647566
database_cross_reference: http://en.wikipedia.org/wiki/Megakaryocyte-erythroid_progenitor_cell

totipotent stem cell
type: Class
subclass of: somatic stem cell
definition: A stem cell from which all cells of the body can form.
database_cross_reference: FMA:84790
has_exact_synonym: totipotential stem cell
has OBO namespace: cell
id: CL:0000052

Axiom
annotated source: totipotent stem cell
annotated property: definition
annotated target: A stem cell from which all cells of the body can form.
database_cross_reference: GOC:add
database_cross_reference: GOC:tfm

non-terminally differentiated cell
type: Class
subclass of: precursor cell
definition: A precursor cell with a limited number of potential fates.
database_cross_reference: BTO:0000125
database_cross_reference: FMA:84782
has_exact_synonym: blast cell
has OBO namespace: cell
id: CL:0000055
comment: define using PATO mulit-potent or oligopotent?

Axiom
annotated source: non-terminally differentiated cell
annotated property: definition
annotated target: A precursor cell with a limited number of potential fates.
database_cross_reference: SANBI:mhl

myoblast
type: Class
subclass of: muscle precursor cell
definition: A cell that is commited to differentiating into a muscle cell. Embryonic myoblasts develop from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes. Myoblasts also occur as transient populations of cells in muscles undergoing repair.
database_cross_reference: BTO:0000222
database_cross_reference: CALOHA:TS-0650
database_cross_reference: FBbt:00005083
database_cross_reference: FMA:70335
database_cross_reference: VHOG:0001529
has OBO namespace: cell
id: CL:0000056

Axiom
annotated source: myoblast
annotated property: definition
annotated target: A cell that is commited to differentiating into a muscle cell. Embryonic myoblasts develop from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes. Myoblasts also occur as transient populations of cells in muscles undergoing repair.
database_cross_reference: GOC:tfm
database_cross_reference: MESH:A11.635
database_cross_reference: PMID:21849021

fibroblast
type: Class
subclass of: anatomical entity
subclass of: connective tissue cell
subclass of: Restriction
  on property: develops_from
  some values from: mesenchymal stem cell
definition: A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped.
database_cross_reference: BTO:0000452
database_cross_reference: CALOHA:TS-0362
database_cross_reference: FMA:63877
database_cross_reference: VHOG:0001482
has OBO namespace: cell
id: CL:0000057
comment: These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative.

Axiom
annotated source: fibroblast
annotated property: definition
annotated target: A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped.
database_cross_reference: ISBN:0517223651
database_cross_reference: MESH:A11.329.228
database_cross_reference: MESH:D005347
database_cross_reference: http://en.wikipedia.org/wiki/Fibroblast

chondroblast
type: Class
subclass of: anatomical entity
subclass of: non-terminally differentiated cell
subclass of: connective tissue cell
subclass of: Restriction
  on property: develops_from
  some values from: prechondroblast
subclass of: Restriction
  on property: produces
  some values from: UBERON_0002418
definition: Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium), and develops from prechondroblast (and thus prechondrogenic) cell.
database_cross_reference: BTO:0003607
database_cross_reference: FMA:66783
has_exact_synonym: chrondoplast
has OBO namespace: cell
id: CL:0000058

Axiom
annotated source: chondroblast
annotated property: definition
annotated target: Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium), and develops from prechondroblast (and thus prechondrogenic) cell.
database_cross_reference: GOC:tfm
database_cross_reference: GO_REF:0000034
database_cross_reference: ISBN:0618947256

ciliated cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: has part
    some values from: GO_0005929
subclass of: native cell
subclass of: Restriction
  on property: has part
  some values from: GO_0005929
definition: A cell that has a filiform extrusion of the cell surface.
database_cross_reference: VHOG:0001532
database_cross_reference: XAO:0000031
has OBO namespace: cell
id: CL:0000064

Axiom
annotated source: ciliated cell
annotated property: definition
annotated target: A cell that has a filiform extrusion of the cell surface.
database_cross_reference: GOC:tfm

epithelial cell
type: Class
subclass of: independent continuant
subclass of: animal cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000483
disjoint with: leukocyte
definition: A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina.
database_cross_reference: BTO:0000414
database_cross_reference: CALOHA:TS-2026
database_cross_reference: CARO:0000077
database_cross_reference: FBbt:00000124
database_cross_reference: FMA:66768
database_cross_reference: WBbt:0003672
has_exact_synonym: epitheliocyte
has OBO namespace: cell
id: CL:0000066

Axiom
annotated source: epithelial cell
annotated property: definition
annotated target: A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina.
database_cross_reference: FB:ma
database_cross_reference: GOC:tfm
database_cross_reference: MESH:A11.436

ciliated epithelial cell
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: has part
    some values from: GO_0005929
subclass of: ciliated cell
subclass of: epithelial cell
definition: An epithelial cell that has a cilia.
database_cross_reference: FMA:70605
has OBO namespace: cell
id: CL:0000067

Axiom
annotated source: ciliated epithelial cell
annotated property: definition
annotated target: An epithelial cell that has a cilia.
database_cross_reference: GOC:tfm

duct epithelial cell
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000058
subclass of: epithelial cell
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000058
definition: An epithelial cell that is part of a duct.
has OBO namespace: cell

Axiom
annotated source: duct epithelial cell
annotated property: definition
annotated target: An epithelial cell that is part of a duct.
database_cross_reference: https://orcid.org/0000-0001-5208-3432

blood vessel endothelial cell
type: Class
equivalent class: Class
  intersection of: squamous epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0004638
subclass of: squamous epithelial cell
subclass of: endothelial cell of vascular tree
subclass of: Restriction
  on property: part of
  some values from: UBERON_0004638
subclass of: Restriction
  on property: develops_from
  some values from: embryonic blood vessel endothelial progenitor cell
definition: An endothelial cell that lines the vasculature.
has_exact_synonym: cuboidal endothelial cell of vascular tree
has OBO namespace: cell
id: CL:0000071

Axiom
annotated source: blood vessel endothelial cell
annotated property: subClassOf
annotated target: squamous epithelial cell
is inferred: true

Axiom
annotated source: blood vessel endothelial cell
annotated property: definition
annotated target: An endothelial cell that lines the vasculature.
database_cross_reference: GOC:tfm

columnar/cuboidal epithelial cell
type: Class
subclass of: epithelial cell
subclass of: somatic cell
definition: A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube.
has OBO namespace: cell
id: CL:0000075

Axiom
annotated source: columnar/cuboidal epithelial cell
annotated property: definition
annotated target: A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube.
database_cross_reference: GO:0002065
database_cross_reference: https://orcid.org/0000-0001-5208-3432

squamous epithelial cell
type: Class
subclass of: epithelial cell
database_cross_reference: CALOHA:TS-1249
has OBO namespace: cell
id: CL:0000076

mesothelial cell
type: Class
subclass of: squamous epithelial cell
subclass of: lining cell
subclass of: meso-epithelial cell
definition: A flattened epithelial cell of mesenchymal origin that lines the serous cavity.
database_cross_reference: FMA:66773
has_exact_synonym: mesotheliocyte
has OBO namespace: cell
id: CL:0000077

Axiom
annotated source: mesothelial cell
annotated property: definition
annotated target: A flattened epithelial cell of mesenchymal origin that lines the serous cavity.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0721662544

circulating cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000179
subclass of: independent continuant
subclass of: native cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000179
definition: A cell which moves among different tissues of the body, via blood, lymph, or other medium.
has OBO namespace: cell

Axiom
annotated source: circulating cell
annotated property: definition
annotated target: A cell which moves among different tissues of the body, via blood, lymph, or other medium.
database_cross_reference: GOC:add

blood cell
type: Class
equivalent class: Class
  intersection of: hematopoietic cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0008015
subclass of: material entity
subclass of: hematopoietic cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0008015
definition: A cell found predominately in the blood.
database_cross_reference: FMA:62844
has OBO namespace: cell
id: CL:0000081

Axiom
annotated source: blood cell
annotated property: subClassOf
annotated target: hematopoietic cell
is inferred: true

Axiom
annotated source: blood cell
annotated property: definition
annotated target: A cell found predominately in the blood.
database_cross_reference: GOC:add
database_cross_reference: GOC:tfm

epithelial cell of lung
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002048
subclass of: anatomical entity
subclass of: epithelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000115
definition: An epithelial cell of the lung.
database_cross_reference: BTO:0004299
has_exact_synonym: lung epithelial cell
has OBO namespace: cell

Axiom
annotated source: epithelial cell of lung
annotated property: definition
annotated target: An epithelial cell of the lung.
database_cross_reference: https://orcid.org/0000-0001-5208-3432

neuron associated cell
type: Class
subclass of: neural cell
subclass of: Restriction
  on property: develops_from
  some values from: neurectodermal cell
has OBO namespace: cell
id: CL:0000095

sensory epithelial cell
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0050906
subclass of: epithelial cell
subclass of: sensory receptor cell
subclass of: somatic cell
definition: A specialized epithelial cell involved in sensory perception. Restricted to special sense organs of the olfactory, gustatory, and vestibulocochlear receptor systems; contain sensory cells surrounded by supportive, non-receptive cells.
has broad synonym: neuroepithelial cell
database_cross_reference: BTO:0004301
has OBO namespace: cell
comment: The term "neuroepithelial cell" is used to describe both this cell type and neurecto-epithelial cell (CL:0000710).

Axiom
annotated source: sensory epithelial cell
annotated property: definition
annotated target: A specialized epithelial cell involved in sensory perception. Restricted to special sense organs of the olfactory, gustatory, and vestibulocochlear receptor systems; contain sensory cells surrounded by supportive, non-receptive cells.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0517223651
database_cross_reference: ISBN:0721662544

interneuron
type: Class
subclass of: neuron
definition: Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions.
database_cross_reference: BTO:0003811
database_cross_reference: FBbt:00005125
database_cross_reference: FMA:67313
database_cross_reference: WBbt:0005113
has OBO namespace: cell
id: CL:0000099

Axiom
annotated source: interneuron
annotated property: definition
annotated target: Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions.
database_cross_reference: GOC:tfm
database_cross_reference: MESH:A08.663.358

motor neuron
type: Class
subclass of: efferent neuron
definition: An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes or inhibits movement.
database_cross_reference: BTO:0000312
database_cross_reference: FMA:83617
database_cross_reference: WBbt:0005409
has_exact_synonym: motoneuron
has OBO namespace: cell
id: CL:0000100

Axiom
annotated source: motor neuron
annotated property: definition
annotated target: An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes or inhibits movement.
database_cross_reference: MESH:A08.663.655.500
database_cross_reference: PMID:16875686

sensory neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: capable of
    some values from: GO_0050906
subclass of: afferent neuron
subclass of: Restriction
  on property: capable of
  some values from: GO_0050906
definition: Any neuron having a sensory function; an afferent neuron conveying sensory impulses.
database_cross_reference: BTO:0001037
database_cross_reference: FBbt:00005124
database_cross_reference: FMA:84649
database_cross_reference: WBbt:0005759
has OBO namespace: cell
id: CL:0000101

Axiom
annotated source: sensory neuron
annotated property: definition
annotated target: Any neuron having a sensory function; an afferent neuron conveying sensory impulses.
database_cross_reference: ISBN:0721662544

autonomic neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: UBERON_0002410
subclass of: peripheral nervous system neuron
subclass of: Restriction
  on property: has soma location
  some values from: UBERON_0002410
definition: A neuron whose cell body is within an autonomic ganglion.
database_cross_reference: FMA:80121
has OBO namespace: cell

Axiom
annotated source: autonomic neuron
annotated property: definition
annotated target: A neuron whose cell body is within an autonomic ganglion.
database_cross_reference: GOC:tfm

endothelial cell
type: Class
subclass of: lining cell
subclass of: meso-epithelial cell
definition: An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm.
database_cross_reference: BTO:0001176
database_cross_reference: CALOHA:TS-0278
database_cross_reference: FMA:66772
has_exact_synonym: endotheliocyte
has OBO namespace: cell
id: CL:0000115
comment: From FMA: 9.07.2001: Endothelial cell has always been classified as a kind of epithelial cell, specifically a squamous cell but that is not true. First, endothelial cell can either be squamous or cuboidal (e.g. high-endothelial cell) and secondly, it has different embryological derivation (mesodermal) than a true epithelial cell (ectodermal and endodermal). The basis for present classification is the fact that it comprises the outermost layer or lining of anatomical structures (location-based) but a better structural basis for the differentia is the cytoskeleton of the cell. Endothelial cell has vimentin filaments while an epithelial cell has keratin filaments. [Onard].

Axiom
annotated source: endothelial cell
annotated property: definition
annotated target: An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm.
database_cross_reference: GOC:tfm
database_cross_reference: MESH:D042783
database_cross_reference: PMID:21275341
database_cross_reference: http://en.wikipedia.org/wiki/Endothelial_cell
database_cross_reference: https://sourceforge.net/tracker/

CNS neuron (sensu Vertebrata)
type: Class
subclass of: neuron
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001017
subclass of: Restriction
  on property: develops_from
  some values from: neuroblast (sensu Vertebrata)
has OBO namespace: cell
id: CL:0000117

glial cell
type: Class
subclass of: neuron associated cell
subclass of: Restriction
  on property: develops_from
  some values from: glioblast
definition: A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons.
database_cross_reference: BTO:0002606
database_cross_reference: CALOHA:TS-0415
database_cross_reference: FMA:54536
has_exact_synonym: neuroglial cell
has OBO namespace: cell
has_related_synonym: neuroglia
id: CL:0000125

Axiom
annotated source: glial cell
annotated property: subClassOf
annotated target: Restriction
  on property: develops_from
  some values from: glioblast
comment: It is unclear that all glial cells develop from a cell type called a glioblast. Radial glial cells develop from neuroepithelial cells and other types of glial cells develop from other precursors. Unless glioblast is meant to describe any cell that can give rise to a glial cell, this relationship needs further investigation.

Axiom
annotated source: glial cell
annotated property: definition
annotated target: A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons.
database_cross_reference: MESH:A08.637

neurectodermal cell
type: Class
subclass of: ectodermal cell
definition: Ectoderm destined to be nervous tissue.
has_exact_synonym: neurectoderm cell
has OBO namespace: cell
id: CL:0000133

Axiom
annotated source: neurectodermal cell
annotated property: definition
annotated target: Ectoderm destined to be nervous tissue.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:068340007X

mesenchymal stem cell
type: Class
subclass of: multi fate stem cell
subclass of: connective tissue cell
definition: A connective tissue cell that normally gives rise to other cells that are organized as three-dimensional masses. In humans, this cell type is CD73-positive, CD90-positive, CD105-positive, CD45-negative, CD34-negative, and MHCII-negative. They may further differentiate into osteoblasts, adipocytes, myocytes, neurons, or chondroblasts in vitro. Originally described as residing in the bone marrow, this cell type is now known to reside in many, if not all, adult organs.
has alternative id: CL:0002452
database_cross_reference: BTO:0002625
database_cross_reference: BTO:0003298
database_cross_reference: FMA:70546
has_narrow_synonym: BMSC
has_narrow_synonym: bone marrow stromal cells
has_narrow_synonym: colony-forming unit-fibroblast
has_narrow_synonym: marrow stromal cells
has OBO namespace: cell
has_related_synonym: CFU-F
has_related_synonym: MSC
has_related_synonym: mesenchymal precursor cell
has_related_synonym: mesenchymal progenitor cells
has_related_synonym: mesenchymal stem cell
has_related_synonym: mesenchymal stromal cell
has_related_synonym: mesenchymal stromal cells
has_related_synonym: stem cells, mesenchymal
id: CL:0000134
comment: Many but not all mesenchymal cells derive from the mesoderm. MSCs are reportedly CD3-negative, CD4-negative, CD5-negative, CD8-negative, CD11a-negative, CD11b-negative, CD14-negative, CD19-negative, CD29-positive, CD31-negative, CD34-negative, CD38-negative, CD40-negative, CD44-positive, CD45-negative, CD49-positive, CD54-positive, CD66b-negative, CD79a-negative, CD80-negative, CD102-positive, CD106-positive, CD117-positive, CD121a-positive, CD121b-positive, CD123-positive, CD124-positive, CD133-negative, CD146-positive, CD166-positive, CD271-positive, B220-negative, Gr1-negative, MHCI-positive, MHCII-negative, SSEA4-negative, sca1-positive, Ter119-negative, and glycophorin A-negative. Cultured MSCs are capable of producing stem cell factor, IL7, IL8, IL11, TGF-beta, cofilin, galectin-1, laminin-receptor 1, cyclophilin A, and MMP-2.

Axiom
annotated source: mesenchymal stem cell
annotated property: subClassOf
annotated target: connective tissue cell
is inferred: true

Axiom
annotated source: mesenchymal stem cell
annotated property: definition
annotated target: A connective tissue cell that normally gives rise to other cells that are organized as three-dimensional masses. In humans, this cell type is CD73-positive, CD90-positive, CD105-positive, CD45-negative, CD34-negative, and MHCII-negative. They may further differentiate into osteoblasts, adipocytes, myocytes, neurons, or chondroblasts in vitro. Originally described as residing in the bone marrow, this cell type is now known to reside in many, if not all, adult organs.
database_cross_reference: FB:ma
database_cross_reference: GOC:dsd
database_cross_reference: PMCID:PMC2613570
database_cross_reference: PMID:10102814j
database_cross_reference: PMID:16923606
database_cross_reference: PMID:17986482
database_cross_reference: PMID:19960544
database_cross_reference: http://en.wikipedia.org/wiki/Mesenchymal_stem_cell
database_cross_reference: http://www.copewithcytokines.de/cope.cgi

Axiom
annotated source: mesenchymal stem cell
annotated property: has_narrow_synonym
annotated target: marrow stromal cells
database_cross_reference: PMID:11378515

Axiom
annotated source: mesenchymal stem cell
annotated property: has_related_synonym
annotated target: MSC
database_cross_reference: PMID:11378515

Axiom
annotated source: mesenchymal stem cell
annotated property: has_related_synonym
annotated target: mesenchymal progenitor cells
database_cross_reference: MESH:D044982
has synonym type: PLURAL

Axiom
annotated source: mesenchymal stem cell
annotated property: has_related_synonym
annotated target: mesenchymal stromal cells
has synonym type: PLURAL

Axiom
annotated source: mesenchymal stem cell
annotated property: has_related_synonym
annotated target: stem cells, mesenchymal
database_cross_reference: MESH:D044982
has synonym type: PLURAL

fat cell
type: Class
subclass of: anatomical entity
subclass of: stuff accumulating cell
subclass of: connective tissue cell
subclass of: Restriction
  on property: develops_from
  some values from: mesenchymal stem cell
definition: A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides.
has alternative id: CL:0000450
database_cross_reference: BTO:0000443
database_cross_reference: CALOHA:TS-0012
database_cross_reference: FMA:63880
has_exact_synonym: adipocyte
has_exact_synonym: adipose cell
has OBO namespace: cell
id: CL:0000136

Axiom
annotated source: fat cell
annotated property: definition
annotated target: A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides.
database_cross_reference: MESH:A11.329.114

chondrocyte
type: Class
subclass of: glycosaminoglycan secreting cell
subclass of: collagen secreting cell
subclass of: Restriction
  on property: located_in
  some values from: UBERON_0002418
subclass of: Restriction
  on property: develops_from
  some values from: chondroblast
definition: Skeletogenic cell that is terminally differentiated, secretes an avascular, GAG-rich matrix, is embedded in cartilage tissue matrix, retains the ability to divide, and develops from a chondroblast cell.
database_cross_reference: BTO:0000249
database_cross_reference: CALOHA:TS-0138
database_cross_reference: FMA:66782
has_exact_synonym: cartilage cell
has OBO namespace: cell
id: CL:0000138

Axiom
annotated source: chondrocyte
annotated property: definition
annotated target: Skeletogenic cell that is terminally differentiated, secretes an avascular, GAG-rich matrix, is embedded in cartilage tissue matrix, retains the ability to divide, and develops from a chondroblast cell.
database_cross_reference: GO_REF:0000034
database_cross_reference: MESH:A11.329.171

pigment cell
type: Class
subclass of: stuff accumulating cell
definition: A pigment cell is a cell that contains pigment granules.
database_cross_reference: VHOG:0001678
has_exact_synonym: chromatocyte
has_exact_synonym: chromatophore
has OBO namespace: cell
id: CL:0000147

Axiom
annotated source: pigment cell
annotated property: definition
annotated target: A pigment cell is a cell that contains pigment granules.
database_cross_reference: GOC:tfm

visual pigment cell
type: Class
subclass of: pigment cell
has broad synonym: pigment cell
has OBO namespace: cell
id: CL:0000149

glandular epithelial cell
type: Class
subclass of: epithelial cell
subclass of: secretory cell
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0006799
definition: A specialized epithelial cell that is capable of synthesizing and secreting certain biomolecules.
database_cross_reference: CALOHA:TS-2085
database_cross_reference: FMA:86494
has OBO namespace: cell

Axiom
annotated source: glandular epithelial cell
annotated property: definition
annotated target: A specialized epithelial cell that is capable of synthesizing and secreting certain biomolecules.
database_cross_reference: GOC:tfm

secretory cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0032940
subclass of: material entity
subclass of: native cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0032940
definition: A cell that specializes in controlled release of one or more substances.
database_cross_reference: BTO:0003659
database_cross_reference: FMA:86916
has OBO namespace: cell
id: CL:0000151

Axiom
annotated source: secretory cell
annotated property: definition
annotated target: A cell that specializes in controlled release of one or more substances.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0721662544

exocrine cell
type: Class
equivalent class: Class
  intersection of: secretory cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002365
subclass of: secretory cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002365
definition: A cell of an exocrine gland; i.e. a gland that discharges its secretion via a duct.
database_cross_reference: FMA:16014
has OBO namespace: cell

Axiom
annotated source: exocrine cell
annotated property: definition
annotated target: A cell of an exocrine gland; i.e. a gland that discharges its secretion via a duct.
database_cross_reference: ISBN:0198547684

glycosaminoglycan secreting cell
type: Class
subclass of: extracellular matrix secreting cell
subclass of: carbohydrate secreting cell
definition: A cell that secretes glycosaminoglycans.
has_exact_synonym: GAG secreting cell
has_narrow_synonym: hyaluronic acid secreting cell
has OBO namespace: cell
id: CL:0000153

Axiom
annotated source: glycosaminoglycan secreting cell
annotated property: definition
annotated target: A cell that secretes glycosaminoglycans.
database_cross_reference: GOC:tfm

protein secreting cell
type: Class
equivalent class: Class
  intersection of: secretory cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0009306
subclass of: secretory cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0009306
has OBO namespace: cell

seromucus secreting cell
type: Class
subclass of: secretory cell
has OBO namespace: cell
id: CL:0000159

acid secreting cell
type: Class
equivalent class: Class
  intersection of: secretory cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0046717
subclass of: secretory cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0046717
has OBO namespace: cell

Axiom
annotated source: acid secreting cell
annotated property: subClassOf
annotated target: secretory cell
is inferred: true

endocrine cell
type: Class
equivalent class: Class
  intersection of: secretory cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0060986
subclass of: secretory cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002368
subclass of: Restriction
  on property: capable of
  some values from: GO_0060986
definition: A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions.
database_cross_reference: FMA:83809
has_exact_synonym: endocrinocyte
has OBO namespace: cell
id: CL:0000163

Axiom
annotated source: endocrine cell
annotated property: definition
annotated target: A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions.
database_cross_reference: MESH:A06.407

enteroendocrine cell
type: Class
subclass of: glandular epithelial cell
subclass of: endocrine cell
definition: An endocrine cell that is located in the epithelium of the gastrointestinal tract or in the pancreas.
database_cross_reference: BTO:0003865
database_cross_reference: FMA:62930
has OBO namespace: cell

Axiom
annotated source: enteroendocrine cell
annotated property: definition
annotated target: An endocrine cell that is located in the epithelium of the gastrointestinal tract or in the pancreas.
database_cross_reference: GOC:tfm
database_cross_reference: SANBI:mhl

neuroendocrine cell
type: Class
subclass of: endocrine cell
subclass of: electrically responsive cell
subclass of: neurecto-epithelial cell
definition: An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals.
database_cross_reference: BTO:0002691
database_cross_reference: FMA:83810
has_exact_synonym: neurosecretory cell
has OBO namespace: cell

Axiom
annotated source: neuroendocrine cell
annotated property: definition
annotated target: An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals.
database_cross_reference: MESH:A06.688

peptide hormone secreting cell
type: Class
equivalent class: Class
  intersection of: secretory cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0030072
subclass of: secretory cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0030072
has OBO namespace: cell

glucagon secreting cell
type: Class
equivalent class: Class
  intersection of: secretory cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0070091
subclass of: peptide hormone secreting cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0070091
definition: A cell that secretes glucagon.
database_cross_reference: FMA:84045
has_exact_synonym: glucagon-secreting cell
has OBO namespace: cell

Axiom
annotated source: glucagon secreting cell
annotated property: definition
annotated target: A cell that secretes glucagon.
database_cross_reference: GOC:tfm

somatostatin secreting cell
type: Class
equivalent class: Class
  intersection of: secretory cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0070253
subclass of: peptide hormone secreting cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0070253
has OBO namespace: cell

steroid hormone secreting cell
type: Class
equivalent class: Class
  intersection of: secretory cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0035929
subclass of: endocrine cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0035929
has OBO namespace: cell
id: CL:0000174

contractile cell
type: Class
subclass of: native cell
definition: A cell whose primary function is to shorten.
has OBO namespace: cell
id: CL:0000183

Axiom
annotated source: contractile cell
annotated property: definition
annotated target: A cell whose primary function is to shorten.
database_cross_reference: FB:ma

muscle cell
type: Class
subclass of: anatomical entity
subclass of: contractile cell
subclass of: electrically responsive cell
subclass of: animal cell
subclass of: somatic cell
subclass of: Restriction
  on property: develops_from
  some values from: myoblast
definition: A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns.
database_cross_reference: BTO:0000888
database_cross_reference: BTO:0000902
database_cross_reference: CALOHA:TS-2032
database_cross_reference: FBbt:00005074
database_cross_reference: FMA:67328
database_cross_reference: WBbt:0003675
has_exact_synonym: muscle fiber
has_exact_synonym: myocyte
has OBO namespace: cell
id: CL:0000187

Axiom
annotated source: muscle cell
annotated property: definition
annotated target: A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns.
database_cross_reference: MESH:A11.620

cell of skeletal muscle
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001134
subclass of: anatomical entity
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001134
definition: A somatic cell located in skeletal muscle.
database_cross_reference: BTO:0004392
database_cross_reference: CALOHA:TS-2158
database_cross_reference: FMA:9727
has_exact_synonym: skeletal muscle cell
has OBO namespace: cell
id: CL:0000188

Axiom
annotated source: cell of skeletal muscle
annotated property: definition
annotated target: A somatic cell located in skeletal muscle.
database_cross_reference: GOC:tfm

smooth muscle cell
type: Class
subclass of: non-striated muscle cell
subclass of: visceral muscle cell
subclass of: Restriction
  on property: develops_from
  some values from: smooth muscle myoblast
definition: A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast).
has alternative id: CL:0000191
has broad synonym: non-striated muscle cell
database_cross_reference: BTO:0004576
database_cross_reference: CALOHA:TS-2159
database_cross_reference: FMA:14072
has_exact_synonym: SMCs
has_exact_synonym: myocytes, smooth muscle
has_exact_synonym: smooth muscle fiber
has_narrow_synonym: non-striated muscle cell
has OBO namespace: cell
id: CL:0000192

Axiom
annotated source: smooth muscle cell
annotated property: definition
annotated target: A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast).
database_cross_reference: MESH:A11.620.520
database_cross_reference: MESH:D032389
database_cross_reference: PMID:9315361
database_cross_reference: http://en.wikipedia.org/wiki/Smooth_muscle_cell

Axiom
annotated source: smooth muscle cell
annotated property: has_exact_synonym
annotated target: SMCs
database_cross_reference: PMID:9315361

Axiom
annotated source: smooth muscle cell
annotated property: has_exact_synonym
annotated target: myocytes, smooth muscle
database_cross_reference: MESH:D032389

sensory receptor cell
type: Class
equivalent class: Class
  intersection of: cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001032
  intersection of: Restriction
    on property: capable of
    some values from: GO_0050906
subclass of: material entity
subclass of: native cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001032
subclass of: Restriction
  on property: capable of
  some values from: GO_0050906
definition: A cell that is capable of detection of a stimulus involved in sensory perception.
has_exact_synonym: receptor cell
has OBO namespace: cell
id: CL:0000197

photoreceptor cell
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: capable of
    some values from: GO_0050962
subclass of: neuronal receptor cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0050962
definition: A cell specialized to detect and transduce light.
database_cross_reference: BTO:0001060
database_cross_reference: CALOHA:TS-0868
database_cross_reference: FBbt:00004211
database_cross_reference: FMA:86740
has OBO namespace: cell
id: CL:0000210

Axiom
annotated source: photoreceptor cell
annotated property: subClassOf
annotated target: neuronal receptor cell
is inferred: true

Axiom
annotated source: photoreceptor cell
annotated property: definition
annotated target: A cell specialized to detect and transduce light.
database_cross_reference: MESH:A08.663.650.650

electrically active cell
type: Class
subclass of: native cell
definition: A cell whose function is determined by the generation or the reception of an electric signal.
has OBO namespace: cell
id: CL:0000211

Axiom
annotated source: electrically active cell
annotated property: definition
annotated target: A cell whose function is determined by the generation or the reception of an electric signal.
database_cross_reference: FB:ma

lining cell
type: Class
subclass of: barrier cell
definition: A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism.
has_exact_synonym: boundary cell
has OBO namespace: cell
id: CL:0000213

Axiom
annotated source: lining cell
annotated property: definition
annotated target: A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism.
database_cross_reference: JB:jb

synovial cell
type: Class
subclass of: glycosaminoglycan secreting cell
subclass of: lining cell
subclass of: meso-epithelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002217
definition: A cell located in the synovial joint.
definition: A meso-epithelial cell that lies between the cartilaginous fibers in the synovial membrane of a joint and produces hyaluronic acid.
database_cross_reference: BTO:0003652
database_cross_reference: CALOHA:TS-0995
database_cross_reference: FMA:66786
has_exact_synonym: synoviocyte
has_narrow_synonym: hyaluronic acid secreting cell
has OBO namespace: cell
id: CL:0000214

Axiom
annotated source: synovial cell
annotated property: subClassOf
annotated target: meso-epithelial cell
is inferred: true

barrier cell
type: Class
subclass of: native cell
definition: A cell whose primary function is to prevent the transport of stuff across compartments.
has OBO namespace: cell
id: CL:0000215

Axiom
annotated source: barrier cell
annotated property: definition
annotated target: A cell whose primary function is to prevent the transport of stuff across compartments.
database_cross_reference: JB:jb

motile cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0048870
subclass of: material entity
subclass of: native cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0048870
definition: A cell that moves by its own activities.
has OBO namespace: cell
id: CL:0000219

Axiom
annotated source: motile cell
annotated property: definition
annotated target: A cell that moves by its own activities.
database_cross_reference: FB:ma

ectodermal cell
type: Class
subclass of: anatomical entity
subclass of: embryonic cell (metazoa)
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000924
definition: A cell of the outer of the three germ layers of the embryo.
database_cross_reference: FMA:72549
has_exact_synonym: ectoderm cell
has OBO namespace: cell
id: CL:0000221

Axiom
annotated source: ectodermal cell
annotated property: definition
annotated target: A cell of the outer of the three germ layers of the embryo.
database_cross_reference: MESH:A16.254.425.273

mesodermal cell
type: Class
subclass of: anatomical entity
subclass of: embryonic cell (metazoa)
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000926
definition: A cell of the middle germ layer of the embryo.
database_cross_reference: FMA:72554
has_exact_synonym: mesoblast
has_exact_synonym: mesoderm cell
has OBO namespace: cell
id: CL:0000222

Axiom
annotated source: mesodermal cell
annotated property: definition
annotated target: A cell of the middle germ layer of the embryo.
database_cross_reference: MESH:A16.254.425.660

endodermal cell
type: Class
subclass of: anatomical entity
subclass of: embryonic cell (metazoa)
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000925
definition: A cell of the inner of the three germ layers of the embryo.
database_cross_reference: FMA:72555
has_exact_synonym: endoderm cell
has OBO namespace: cell
id: CL:0000223

Axiom
annotated source: endodermal cell
annotated property: definition
annotated target: A cell of the inner of the three germ layers of the embryo.
database_cross_reference: MESH:A16.254.425.407

anucleate cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001405
subclass of: native cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0001405
disjoint with: nucleate cell
definition: A cell that lacks a nucleus.
database_cross_reference: FMA:68647
has_exact_synonym: non-nucleated cell
has OBO namespace: cell

Axiom
annotated source: anucleate cell
annotated property: definition
annotated target: A cell that lacks a nucleus.
database_cross_reference: FB:ma

single nucleate cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001407
subclass of: nucleate cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0001407
definition: A cell with a single nucleus.
has OBO namespace: cell

Axiom
annotated source: single nucleate cell
annotated property: definition
annotated target: A cell with a single nucleus.
database_cross_reference: FB:ma
database_cross_reference: GOC:tfm

binucleate cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001406
subclass of: multinucleate cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0001406
has OBO namespace: cell

multinucleate cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001908
subclass of: nucleate cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0001908
definition: A cell with more than one nucleus.
database_cross_reference: AEO:0000203
database_cross_reference: WBbt:0008074
has_exact_synonym: syncitium
has_exact_synonym: syncytial cell
has_exact_synonym: syncytium
has OBO namespace: cell
id: CL:0000228

Axiom
annotated source: multinucleate cell
annotated property: definition
annotated target: A cell with more than one nucleus.
database_cross_reference: FB:ma

erythrocyte
type: Class
equivalent class: Class
  intersection of: erythroid lineage cell
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002039
  intersection of: Restriction
    on property: capable of
    some values from: GO_0008015
  intersection of: Restriction
    on property: capable of
    some values from: GO_0015671
  intersection of: Restriction
    on property: lacks_part
    some values from: GO_0005840
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001945
subclass of: blood cell
subclass of: oxygen accumulating cell
subclass of: erythroid lineage cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0002039
subclass of: Restriction
  on property: develops_from
  some values from: reticulocyte
subclass of: Restriction
  on property: lacks_part
  some values from: GO_0005840
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001945
definition: A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen.
database_cross_reference: BTO:0000424
database_cross_reference: CALOHA:TS-0290
database_cross_reference: FMA:81100
has_exact_synonym: RBC
has_exact_synonym: red blood cell
has OBO namespace: cell
id: CL:0000232

Axiom
annotated source: erythrocyte
annotated property: subClassOf
annotated target: erythroid lineage cell
is inferred: true

Axiom
annotated source: erythrocyte
annotated property: definition
annotated target: A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen.
database_cross_reference: GOC:tfm
database_cross_reference: MESH:A11.118.290

eukaryotic cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: only in taxon
    some values from: NCBITaxon 2759
subclass of: native cell
subclass of: Restriction
  on property: only in taxon
  some values from: NCBITaxon 2759
has OBO namespace: cell
id: CL:0000255

Eumycetozoan cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: only in taxon
    some values from: NCBITaxon_142796
subclass of: eukaryotic cell
subclass of: Restriction
  on property: only in taxon
  some values from: NCBITaxon_142796
has OBO namespace: cell

eye photoreceptor cell
type: Class
equivalent class: Class
  intersection of: photoreceptor cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000970
subclass of: photoreceptor cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000970
has OBO namespace: cell
id: CL:0000287

structural cell
type: Class
subclass of: native cell
definition: A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism.
has OBO namespace: cell
id: CL:0000293

Axiom
annotated source: structural cell
annotated property: definition
annotated target: A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism.
database_cross_reference: TAIR:sr

crystallin accumulating cell
type: Class
subclass of: stuff accumulating cell
database_cross_reference: FBbt:00004193
has_exact_synonym: lens cell
has OBO namespace: cell

serous secreting cell
type: Class
subclass of: seromucus secreting cell
definition: Columnar glandular cell with irregular nucleus, copious granular endoplasmic reticulum and supranuclear granules. Secretes a watery fluid containing proteins known as serous fluid.
database_cross_reference: BTO:0003687
database_cross_reference: FMA:62511
has_exact_synonym: serous cell
has OBO namespace: cell
id: CL:0000313

Axiom
annotated source: serous secreting cell
annotated property: definition
annotated target: Columnar glandular cell with irregular nucleus, copious granular endoplasmic reticulum and supranuclear granules. Secretes a watery fluid containing proteins known as serous fluid.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0517223651
database_cross_reference: ISBN:0721662544

stuff accumulating cell
type: Class
subclass of: native cell
definition: A cell that is specialised to accumulate a particular substance(s).
has OBO namespace: cell
id: CL:0000325
in_subset: upper level

Axiom
annotated source: stuff accumulating cell
annotated property: definition
annotated target: A cell that is specialised to accumulate a particular substance(s).
database_cross_reference: FB:ma

extracellular matrix secreting cell
type: Class
subclass of: secretory cell
subclass of: stromal cell
has OBO namespace: cell
id: CL:0000327

oxygen accumulating cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0015671
subclass of: material entity
subclass of: native cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0015671
has OBO namespace: cell
id: CL:0000329

migratory neural crest cell
type: Class
subclass of: motile cell
subclass of: neural crest cell
subclass of: progenitor cell
subclass of: Restriction
  on property: develops_from
  some values from: premigratory neural crest cell
definition: A cell derived from the specialized ectoderm flanking each side of the embryonic neural plate, which after the closure of the neural tube, forms masses of cells that migrate out from the dorsal aspect of the neural tube to spread throughout the body.
database_cross_reference: FMA:86667
has OBO namespace: cell
id: CL:0000333

Axiom
annotated source: migratory neural crest cell
annotated property: definition
annotated target: A cell derived from the specialized ectoderm flanking each side of the embryonic neural plate, which after the closure of the neural tube, forms masses of cells that migrate out from the dorsal aspect of the neural tube to spread throughout the body.
database_cross_reference: MESH:A16.254.600

mesenchyme condensation cell
type: Class
subclass of: mesenchymal cell
definition: A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors.
has OBO namespace: cell
id: CL:0000335

Axiom
annotated source: mesenchyme condensation cell
annotated property: definition
annotated target: A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors.
database_cross_reference: GOC:tfm
database_cross_reference: PMID:5025404

scleral cell
type: Class
equivalent class: Class
  intersection of: structural cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001773
subclass of: anatomical entity
subclass of: structural cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001773
subclass of: Restriction
  on property: develops_from
  some values from: migratory cranial neural crest cell
definition: A cell of the sclera of the eye.
has OBO namespace: cell
id: CL:0000347

Axiom
annotated source: scleral cell
annotated property: definition
annotated target: A cell of the sclera of the eye.
database_cross_reference: GOC:add

choroidal cell of the eye
type: Class
equivalent class: Class
  intersection of: structural cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001776
subclass of: anatomical entity
subclass of: structural cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001776
subclass of: Restriction
  on property: develops_from
  some values from: migratory cranial neural crest cell
definition: A cell of the choroid of the eye.
has OBO namespace: cell

Axiom
annotated source: choroidal cell of the eye
annotated property: definition
annotated target: A cell of the choroid of the eye.
database_cross_reference: GOC:add

extraembryonic cell
type: Class
equivalent class: Class
  intersection of: animal cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000478
subclass of: anatomical entity
subclass of: animal cell
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000478
has OBO namespace: cell

epiblast cell
type: Class
subclass of: totipotent stem cell
definition: A cell of the outer layer of a blastula that gives rise to the ectoderm after gastrulation.
has OBO namespace: cell
id: CL:0000352

Axiom
annotated source: epiblast cell
annotated property: definition
annotated target: A cell of the outer layer of a blastula that gives rise to the ectoderm after gastrulation.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0618947256

multi-potent skeletal muscle stem cell
type: Class
equivalent class: Class
  intersection of: multi fate stem cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001134
subclass of: multi fate stem cell
subclass of: cell of skeletal muscle
definition: A multifate stem cell found in skeletal muscle than can differentiate into many different cell types, including muscle. Distinct cell type from satellite cell.
database_cross_reference: FMA:86767
has OBO namespace: cell
id: CL:0000355
comment: Multi-potency demonstrated ex vivo. At the time of writing, it is unclear whether the endogenous population differentiates into multiple cell types in vivo.

Axiom
annotated source: multi-potent skeletal muscle stem cell
annotated property: subClassOf
annotated target: multi fate stem cell
is inferred: true

Axiom
annotated source: multi-potent skeletal muscle stem cell
annotated property: definition
annotated target: A multifate stem cell found in skeletal muscle than can differentiate into many different cell types, including muscle. Distinct cell type from satellite cell.
database_cross_reference: PMID:18282570

vascular associated smooth muscle cell
type: Class
equivalent class: Class
  intersection of: smooth muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002049
subclass of: smooth muscle cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002049
definition: A smooth muscle cell associated with the vasculature.
has_exact_synonym: VSMC
has_exact_synonym: vascular smooth muscle cell
has OBO namespace: cell

Axiom
annotated source: vascular associated smooth muscle cell
annotated property: subClassOf
annotated target: smooth muscle cell
is inferred: true

Axiom
annotated source: vascular associated smooth muscle cell
annotated property: definition
annotated target: A smooth muscle cell associated with the vasculature.
database_cross_reference: GOC:dsd
database_cross_reference: GOC:tfm

epidermal cell
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0007376
subclass of: general ecto-epithelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0007376
definition: An epithelial cell of the integument (the outer layer of an organism).
has alternative id: CL:1000396
database_cross_reference: BTO:0001470
database_cross_reference: CALOHA:TS-0283
database_cross_reference: FMA:62411
has_exact_synonym: cell of epidermis
has_narrow_synonym: epithelial cell of skin
has OBO namespace: cell

Axiom
annotated source: epidermal cell
annotated property: definition
annotated target: An epithelial cell of the integument (the outer layer of an organism).
database_cross_reference: Flybase:dsj
database_cross_reference: MA:ma

Axiom
annotated source: epidermal cell
annotated property: has_exact_synonym
annotated target: cell of epidermis
database_cross_reference: FMA:62411

Axiom
annotated source: epidermal cell
annotated property: has_narrow_synonym
annotated target: epithelial cell of skin
database_cross_reference: FMA:62411

animal zygote
type: Class
equivalent class: Class
  intersection of: zygote
  intersection of: Restriction
    on property: only in taxon
    some values from: NCBITaxon_33208
subclass of: early embryonic cell (metazoa)
subclass of: zygote
definition: Diploid cell produced by the fusion of sperm cell nucleus and egg cell.
has broad synonym: zygote
database_cross_reference: BTO:0000854
database_cross_reference: EHDAA2:0004546
database_cross_reference: FMA:72395
has OBO namespace: cell
id: CL:0000365

Axiom
annotated source: animal zygote
annotated property: definition
annotated target: Diploid cell produced by the fusion of sperm cell nucleus and egg cell.
database_cross_reference: ISBN:0471245208

neurosecretory neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: capable of
    some values from: GO_0046879
subclass of: secretory cell
subclass of: efferent neuron
subclass of: Restriction
  on property: capable of
  some values from: GO_0046879
database_cross_reference: FBbt:00005130
has OBO namespace: cell

electrically responsive cell
type: Class
subclass of: electrically active cell
definition: A cell whose function is determined by its response to an electric signal.
has OBO namespace: cell
id: CL:0000393

Axiom
annotated source: electrically responsive cell
annotated property: definition
annotated target: A cell whose function is determined by its response to an electric signal.
database_cross_reference: FB:ma

ganglion interneuron
type: Class
equivalent class: Class
  intersection of: interneuron
  intersection of: Restriction
    on property: has soma location
    some values from: UBERON_0000045
subclass of: interneuron
subclass of: Restriction
  on property: has soma location
  some values from: UBERON_0000045
has OBO namespace: cell

Axiom
annotated source: ganglion interneuron
annotated property: subClassOf
annotated target: interneuron
is inferred: true

CNS interneuron
type: Class
equivalent class: Class
  intersection of: interneuron
  intersection of: Restriction
    on property: has soma location
    some values from: UBERON_0001017
subclass of: interneuron
subclass of: CNS neuron (sensu Vertebrata)
subclass of: central nervous system neuron
has OBO namespace: cell
id: CL:0000402

Axiom
annotated source: CNS interneuron
annotated property: subClassOf
annotated target: interneuron
is inferred: true

electrically signaling cell
type: Class
subclass of: electrically active cell
definition: A cell that initiates an electrical signal and passes that signal to another cell.
has OBO namespace: cell
id: CL:0000404

Axiom
annotated source: electrically signaling cell
annotated property: definition
annotated target: A cell that initiates an electrical signal and passes that signal to another cell.
database_cross_reference: FB:ma

carbohydrate secreting cell
type: Class
subclass of: secretory cell
has OBO namespace: cell
id: CL:0000447

biogenic amine secreting cell
type: Class
subclass of: secretory cell
has OBO namespace: cell

serotonin secreting cell
type: Class
equivalent class: Class
  intersection of: secretory cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0001820
subclass of: biogenic amine secreting cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0001820
definition: A cell type that secretes 5-Hydroxytryptamine (serotonin).
has_exact_synonym: 5-HT secreting cell
has_exact_synonym: 5-Hydroxytryptamine secreting cell
has OBO namespace: cell

Axiom
annotated source: serotonin secreting cell
annotated property: definition
annotated target: A cell type that secretes 5-Hydroxytryptamine (serotonin).
database_cross_reference: GOC:tfm
database_cross_reference: PMID:19630576

noradrenergic cell
type: Class
equivalent class: Class
  intersection of: secretory cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0048243
subclass of: biogenic amine secreting cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0048243
definition: A cell capable of producting norepiniphrine. Norepiniphrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme.
has_exact_synonym: noradrenaline secreting cell
has_exact_synonym: norepinephrin secreting cell
has_exact_synonym: norepinephrine secreting cell
has OBO namespace: cell

Axiom
annotated source: noradrenergic cell
annotated property: definition
annotated target: A cell capable of producting norepiniphrine. Norepiniphrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:068340007X

visible light photoreceptor cell
type: Class
equivalent class: Class
  intersection of: photoreceptor cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0009584
subclass of: photoreceptor cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0009584
definition: A photoreceptor cell that detects visible light.
has OBO namespace: cell

Axiom
annotated source: visible light photoreceptor cell
annotated property: definition
annotated target: A photoreceptor cell that detects visible light.
database_cross_reference: GOC:tfm

stromal cell
type: Class
subclass of: anatomical entity
subclass of: connective tissue cell
subclass of: Restriction
  on property: develops_from
  some values from: mesenchymal stem cell
definition: A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere.
database_cross_reference: BTO:0002064
database_cross_reference: FMA:83624
has OBO namespace: cell
id: CL:0000499

Axiom
annotated source: stromal cell
annotated property: definition
annotated target: A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere.
database_cross_reference: GOC:tfm
database_cross_reference: MESH:A11.329.830

cardiac muscle myoblast
type: Class
equivalent class: Class
  intersection of: myoblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001133
  intersection of: Restriction
    on property: develops_into
    some values from: cardiac muscle cell
subclass of: cardiocyte
subclass of: cardiac myoblast
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001133
definition: A precursor cell destined to differentiate into cardiac muscle cell.
has alternative id: CL:0000714
database_cross_reference: FMA:84797
has_exact_synonym: cardiac muscle progenitor cell
has_exact_synonym: cardiomyocyte progenitor cell
has OBO namespace: cell
id: CL:0000513

Axiom
annotated source: cardiac muscle myoblast
annotated property: definition
annotated target: A precursor cell destined to differentiate into cardiac muscle cell.
database_cross_reference: GOC:tfm
database_cross_reference: MESH:A11.635.470

smooth muscle myoblast
type: Class
equivalent class: Class
  intersection of: myoblast
  intersection of: Restriction
    on property: develops_into
    some values from: smooth muscle cell
subclass of: myoblast
subclass of: Restriction
  on property: develops_into
  some values from: smooth muscle cell
definition: A precursor cell destined to differentiate into smooth muscle myocytes.
database_cross_reference: FMA:84798
has_exact_synonym: myoblast, smooth muscle
has OBO namespace: cell
has_related_synonym: satellite cell
id: CL:0000514

Axiom
annotated source: smooth muscle myoblast
annotated property: subClassOf
annotated target: myoblast
is inferred: true

Axiom
annotated source: smooth muscle myoblast
annotated property: definition
annotated target: A precursor cell destined to differentiate into smooth muscle myocytes.
database_cross_reference: GOC:tfm
database_cross_reference: MESH:A11.635.510
database_cross_reference: MESH:D032390

Axiom
annotated source: smooth muscle myoblast
annotated property: has_exact_synonym
annotated target: myoblast, smooth muscle
database_cross_reference: MESH:D032390

skeletal muscle myoblast
type: Class
equivalent class: Class
  intersection of: myoblast
  intersection of: Restriction
    on property: develops_into
    some values from: skeletal muscle fiber
subclass of: myoblast
subclass of: progenitor cell
subclass of: Restriction
  on property: develops_from
  some values from: multi-potent skeletal muscle stem cell
subclass of: Restriction
  on property: develops_into
  some values from: skeletal muscle fiber
definition: A myoblast that differentiates into skeletal muscle fibers.
database_cross_reference: FMA:84799
has_exact_synonym: skeletal myoblast
has OBO namespace: cell
id: CL:0000515

Axiom
annotated source: skeletal muscle myoblast
annotated property: subClassOf
annotated target: myoblast
is inferred: true

Axiom
annotated source: skeletal muscle myoblast
annotated property: definition
annotated target: A myoblast that differentiates into skeletal muscle fibers.
database_cross_reference: SANBI:mhl

fungal cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: only in taxon
    some values from: NCBITaxon 4751
subclass of: eukaryotic cell
subclass of: Restriction
  on property: only in taxon
  some values from: NCBITaxon 4751
disjoint with: animal cell
has OBO namespace: cell

afferent neuron
type: Class
subclass of: neuron
definition: A neuron which conveys sensory information centrally from the periphery.
database_cross_reference: FMA:87653
has_exact_synonym: input neuron
has OBO namespace: cell
id: CL:0000526

Axiom
annotated source: afferent neuron
annotated property: definition
annotated target: A neuron which conveys sensory information centrally from the periphery.
database_cross_reference: GOC:tfm
database_cross_reference: MESH:A08.663.650

efferent neuron
type: Class
subclass of: neuron
definition: A neuron which sends impulses peripherally to activate muscles or secretory cells.
has_exact_synonym: output neuron
has OBO namespace: cell
id: CL:0000527

Axiom
annotated source: efferent neuron
annotated property: definition
annotated target: A neuron which sends impulses peripherally to activate muscles or secretory cells.
database_cross_reference: MESH:A08.663.655

primary neuron
type: Class
subclass of: neuron
has OBO namespace: cell
id: CL:0000530

primary sensory neuron
type: Class
equivalent class: Class
  intersection of: sensory neuron
  intersection of: primary neuron
subclass of: sensory neuron
subclass of: primary neuron
has OBO namespace: cell
id: CL:0000531

neuron
type: Class
subclass of: material entity
subclass of: electrically responsive cell
subclass of: electrically signaling cell
subclass of: neural cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0019226
definition: The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system.
IAO_0000412: cl.owl
database_cross_reference: BTO:0000938
database_cross_reference: CALOHA:TS-0683
database_cross_reference: FBbt:00005106
database_cross_reference: FMA:54527
database_cross_reference: VHOG:0001483
database_cross_reference: WBbt:0003679
has_exact_synonym: nerve cell
has OBO namespace: cell
id: CL:0000540
comment: These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma.

Axiom
annotated source: neuron
annotated property: definition
annotated target: The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system.
database_cross_reference: MESH:A08.663
database_cross_reference: MESH:D009474
database_cross_reference: http://en.wikipedia.org/wiki/Neuron

proerythroblast
type: Class
equivalent class: Class
  intersection of: erythroid lineage cell
  intersection of: Restriction
    on property: has part
    some values from: basophilic cytoplasm
  intersection of: Restriction
    on property: has part
    some values from: increased nucleus size
  intersection of: Restriction
    on property: has part
    some values from: GO_0005730
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002505
  intersection of: Restriction
    on property: has plasma membrane part
    some values from: PR_000001945
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001002
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001004
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001012
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001020
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001024
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001083
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001084
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001289
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001839
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001889
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000002978
subclass of: erythroid lineage cell
subclass of: nucleate cell
subclass of: Restriction
  on property: has part
  some values from: basophilic cytoplasm
subclass of: Restriction
  on property: has part
  some values from: increased nucleus size
subclass of: Restriction
  on property: has part
  some values from: GO_0005730
subclass of: Restriction
  on property: has plasma membrane part
  some values from: PR_000001945
subclass of: Restriction
  on property: develops_from
  some values from: erythroid progenitor cell
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001002
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001004
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001012
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001020
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001024
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001083
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001084
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001289
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001839
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001889
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000002978
definition: An immature, nucleated erythrocyte occupying the stage of erythropoeisis that follows formation of erythroid progenitor cells. This cell is CD71-positive, has both a nucleus and a nucleolus, and lacks hematopoeitic lineage markers.
database_cross_reference: FMA:83518
has_exact_synonym: rubriblast
has OBO namespace: cell
has_related_synonym: pronormoblast
id: CL:0000547

Axiom
annotated source: proerythroblast
annotated property: subClassOf
annotated target: erythroid lineage cell
is inferred: true

Axiom
annotated source: proerythroblast
annotated property: definition
annotated target: An immature, nucleated erythrocyte occupying the stage of erythropoeisis that follows formation of erythroid progenitor cells. This cell is CD71-positive, has both a nucleus and a nucleolus, and lacks hematopoeitic lineage markers.
database_cross_reference: ISBN:0721601464
database_cross_reference: MESH:A11.118.290.350.200
database_cross_reference: PMID:1638021

Axiom
annotated source: proerythroblast
annotated property: has_exact_synonym
annotated target: rubriblast
database_cross_reference: ISBN:0721601464

animal cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: only in taxon
    some values from: NCBITaxon_33208
subclass of: eukaryotic cell
subclass of: Restriction
  on property: only in taxon
  some values from: NCBITaxon_33208
has OBO namespace: cell
id: CL:0000548
in_subset: upper level

basophilic erythroblast
type: Class
equivalent class: Class
  intersection of: erythroblast
  intersection of: Restriction
    on property: has part
    some values from: basophilic cytoplasm
  intersection of: Restriction
    on property: has part
    some values from: GO_0000792
  intersection of: Restriction
    on property: has plasma membrane part
    some values from: PR_000001945
subclass of: erythroblast
subclass of: Restriction
  on property: has part
  some values from: basophilic cytoplasm
subclass of: Restriction
  on property: has part
  some values from: GO_0000792
subclass of: Restriction
  on property: has plasma membrane part
  some values from: PR_000001945
definition: A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. This cell is CD71-positive and lacks hematopoeitic lineage markers.
database_cross_reference: FMA:83505
has_exact_synonym: basophilic normoblast
has_exact_synonym: early erythroblast
has_exact_synonym: early normoblast
has_exact_synonym: prorubricyte
has OBO namespace: cell
id: CL:0000549

Axiom
annotated source: basophilic erythroblast
annotated property: subClassOf
annotated target: erythroblast
is inferred: true

Axiom
annotated source: basophilic erythroblast
annotated property: definition
annotated target: A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. This cell is CD71-positive and lacks hematopoeitic lineage markers.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0721601464

Axiom
annotated source: basophilic erythroblast
annotated property: has_exact_synonym
annotated target: basophilic normoblast
database_cross_reference: ISBN:0721601464

Axiom
annotated source: basophilic erythroblast
annotated property: has_exact_synonym
annotated target: early erythroblast
database_cross_reference: ISBN:0721601464

Axiom
annotated source: basophilic erythroblast
annotated property: has_exact_synonym
annotated target: early normoblast
database_cross_reference: ISBN:0721601464

Axiom
annotated source: basophilic erythroblast
annotated property: has_exact_synonym
annotated target: prorubricyte
database_cross_reference: ISBN:0721601464

polychromatophilic erythroblast
type: Class
equivalent class: Class
  intersection of: erythroblast
  intersection of: Restriction
    on property: has part
    some values from: polychromatophilic cytoplasm
  intersection of: Restriction
    on property: has part
    some values from: GO_0000792
  intersection of: Restriction
    on property: has plasma membrane part
    some values from: PR_000001945
subclass of: erythroblast
subclass of: Restriction
  on property: has part
  some values from: polychromatophilic cytoplasm
subclass of: Restriction
  on property: has part
  some values from: GO_0000792
subclass of: Restriction
  on property: has plasma membrane part
  some values from: PR_000001945
subclass of: Restriction
  on property: develops_from
  some values from: basophilic erythroblast
definition: A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely basophilic, but takes on acidophilic aspects, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. This cell is CD71-positive and lacks hematopoeitic lineage markers.
database_cross_reference: FMA:83506
has_exact_synonym: intermediate erythroblast
has_exact_synonym: intermediate normoblast
has_exact_synonym: polychromatic erythroblast
has_exact_synonym: polychromatic normoblast
has_exact_synonym: polychromatophilic normoblast
has_exact_synonym: rubricyte
has OBO namespace: cell
id: CL:0000550

Axiom
annotated source: polychromatophilic erythroblast
annotated property: subClassOf
annotated target: erythroblast
is inferred: true

Axiom
annotated source: polychromatophilic erythroblast
annotated property: definition
annotated target: A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely basophilic, but takes on acidophilic aspects, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. This cell is CD71-positive and lacks hematopoeitic lineage markers.
database_cross_reference: ISBN:0721601464

Axiom
annotated source: polychromatophilic erythroblast
annotated property: has_exact_synonym
annotated target: intermediate erythroblast
database_cross_reference: ISBN:0721601464

Axiom
annotated source: polychromatophilic erythroblast
annotated property: has_exact_synonym
annotated target: intermediate normoblast
database_cross_reference: ISBN:0721601464

Axiom
annotated source: polychromatophilic erythroblast
annotated property: has_exact_synonym
annotated target: polychromatic erythroblast
database_cross_reference: ISBN:0721601464

Axiom
annotated source: polychromatophilic erythroblast
annotated property: has_exact_synonym
annotated target: polychromatic normoblast
database_cross_reference: ISBN:0721601464

Axiom
annotated source: polychromatophilic erythroblast
annotated property: has_exact_synonym
annotated target: polychromatophilic normoblast
database_cross_reference: ISBN:0721601464

Axiom
annotated source: polychromatophilic erythroblast
annotated property: has_exact_synonym
annotated target: rubricyte
database_cross_reference: ISBN:0721601464

orthochromatic erythroblast
type: Class
equivalent class: Class
  intersection of: erythroblast
  intersection of: Restriction
    on property: has part
    some values from: acidophilic cytoplasm
  intersection of: Restriction
    on property: participates in
    some values from: GO_0030263
subclass of: erythroblast
subclass of: Restriction
  on property: has part
  some values from: acidophilic cytoplasm
subclass of: Restriction
  on property: participates in
  some values from: GO_0030263
subclass of: Restriction
  on property: develops_from
  some values from: polychromatophilic erythroblast
definition: The final stage of the nucleated, immature erythrocyte, before nuclear loss. Typically the cytoplasm is described as acidophilic, but it still shows a faint polychromatic tint. The nucleus is small and initially may still have coarse, clumped chromatin, as in its precursor, the polychromatophilic erythroblast, but ultimately it becomes pyknotic, and appears as a deeply staining, blue-black, homogeneous structureless mass. The nucleus is often eccentric and sometimes lobulated.
database_cross_reference: FMA:84646
has_exact_synonym: acidophilic erythroblast
has_exact_synonym: eosinophilic erythroblast
has_exact_synonym: late erythoblast
has_exact_synonym: orthochromatic normoblast
has_exact_synonym: pyknotic eto enrythroblast
has OBO namespace: cell
id: CL:0000552

Axiom
annotated source: orthochromatic erythroblast
annotated property: subClassOf
annotated target: erythroblast
is inferred: true

Axiom
annotated source: orthochromatic erythroblast
annotated property: definition
annotated target: The final stage of the nucleated, immature erythrocyte, before nuclear loss. Typically the cytoplasm is described as acidophilic, but it still shows a faint polychromatic tint. The nucleus is small and initially may still have coarse, clumped chromatin, as in its precursor, the polychromatophilic erythroblast, but ultimately it becomes pyknotic, and appears as a deeply staining, blue-black, homogeneous structureless mass. The nucleus is often eccentric and sometimes lobulated.
database_cross_reference: ISBN:0721601464

Axiom
annotated source: orthochromatic erythroblast
annotated property: has_exact_synonym
annotated target: acidophilic erythroblast
database_cross_reference: ISBN:0721601464

Axiom
annotated source: orthochromatic erythroblast
annotated property: has_exact_synonym
annotated target: eosinophilic erythroblast
database_cross_reference: ISBN:0721601464

Axiom
annotated source: orthochromatic erythroblast
annotated property: has_exact_synonym
annotated target: orthochromatic normoblast
database_cross_reference: ISBN:0721601464

Axiom
annotated source: orthochromatic erythroblast
annotated property: has_exact_synonym
annotated target: pyknotic eto enrythroblast
database_cross_reference: ISBN:0721601464

megakaryocyte progenitor cell
type: Class
equivalent class: Class
  intersection of: myeloid lineage restricted progenitor cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0007113
  intersection of: Restriction
    on property: capable of
    some values from: GO_0030219
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001002
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001004
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001012
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001020
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001024
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001083
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001084
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001289
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001839
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001889
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000002978
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000002981
subclass of: myeloid cell
subclass of: myeloid lineage restricted progenitor cell
subclass of: Restriction
  on property: develops_from
  some values from: megakaryocyte-erythroid progenitor cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0007113
subclass of: Restriction
  on property: capable of
  some values from: GO_0030219
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001002
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001004
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001012
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001020
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001024
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001083
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001084
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001289
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001839
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001889
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000002978
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000002981
definition: The earliest cytologically identifiable precursor in the thrombocytic series. This cell is capable of endomitosis and lacks expression of hematopoieitic lineage markers (lin-negative).
database_cross_reference: BTO:0001164
database_cross_reference: CALOHA:TS-0610
database_cross_reference: FMA:84235
has_exact_synonym: CFU-Meg
has_exact_synonym: Meg-CFC
has_exact_synonym: MkP
has_exact_synonym: colony-forming unit-megakaryocyte
has_exact_synonym: megacaryoblast
has_exact_synonym: megacaryocyte progenitor cell
has_exact_synonym: megakaryoblast
has_exact_synonym: megakaryocytic progenitor cell
has OBO namespace: cell
has_related_synonym: promegacaryocyte
has_related_synonym: promegakaryocyte
comment: Lineage negative is described here as CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD14-negative, CD19-negative, CD20-negative, CD56-negative, Ly6g-negative, and Ter119-negative.

Axiom
annotated source: megakaryocyte progenitor cell
annotated property: subClassOf
annotated target: myeloid lineage restricted progenitor cell
is inferred: true

Axiom
annotated source: megakaryocyte progenitor cell
annotated property: definition
annotated target: The earliest cytologically identifiable precursor in the thrombocytic series. This cell is capable of endomitosis and lacks expression of hematopoieitic lineage markers (lin-negative).
database_cross_reference: GOC:dsd
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0721601464

Axiom
annotated source: megakaryocyte progenitor cell
annotated property: has_exact_synonym
annotated target: CFU-Meg
database_cross_reference: PMID:11722431
database_cross_reference: PMID:12482498

Axiom
annotated source: megakaryocyte progenitor cell
annotated property: has_exact_synonym
annotated target: Meg-CFC
database_cross_reference: PMCID:PMC1794060

Axiom
annotated source: megakaryocyte progenitor cell
annotated property: has_exact_synonym
annotated target: MkP
database_cross_reference: PMID:21116988

Axiom
annotated source: megakaryocyte progenitor cell
annotated property: has_exact_synonym
annotated target: megakaryocytic progenitor cell
database_cross_reference: PMID:12482498

megakaryocyte
type: Class
equivalent class: Class
  intersection of: myeloid cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002371
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001393
subclass of: myeloid cell
subclass of: bone marrow hematopoietic cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0001393
subclass of: Restriction
  on property: develops_from
  some values from: megakaryocyte progenitor cell
disjoint with: erythroid lineage cell
definition: A giant cell 50 to 100 micron in diameter, with a greatly lobulated nucleus, found in the bone marrow; mature blood platelets are released from its cytoplasm.
database_cross_reference: BTO:0000843
database_cross_reference: CALOHA:TS-0611
database_cross_reference: FMA:83555
has_exact_synonym: megacaryocyte
has_exact_synonym: megalocaryocyte
has_exact_synonym: megalokaryocyte
has OBO namespace: cell
comment: Megakaryocytes are reportedly CD181-positive and CD182-positive.

Axiom
annotated source: megakaryocyte
annotated property: subClassOf
annotated target: myeloid cell
is inferred: true

Axiom
annotated source: megakaryocyte
annotated property: definition
annotated target: A giant cell 50 to 100 micron in diameter, with a greatly lobulated nucleus, found in the bone marrow; mature blood platelets are released from its cytoplasm.
database_cross_reference: ISBN:0721601464
database_cross_reference: MESH:D008533
database_cross_reference: http://en.wikipedia.org/wiki/Megakaryocyte

reticulocyte
type: Class
equivalent class: Class
  intersection of: erythroid lineage cell
  intersection of: Restriction
    on property: has plasma membrane part
    some values from: PR_000001945
  intersection of: Restriction
    on property: capable of
    some values from: GO_0071971
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001002
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001004
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001012
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001020
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001024
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001083
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001084
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001289
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001839
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001889
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000002978
subclass of: material entity
subclass of: erythroid lineage cell
subclass of: Restriction
  on property: has plasma membrane part
  some values from: PR_000001945
subclass of: Restriction
  on property: develops_from
  some values from: orthochromatic erythroblast
subclass of: Restriction
  on property: capable of
  some values from: GO_0071971
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001002
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001004
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001012
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001020
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001024
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001083
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001084
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001289
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001839
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001889
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000002978
definition: An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds.
database_cross_reference: BTO:0001173
database_cross_reference: CALOHA:TS-0864
has OBO namespace: cell
id: CL:0000558

Axiom
annotated source: reticulocyte
annotated property: subClassOf
annotated target: erythroid lineage cell
is inferred: true

Axiom
annotated source: reticulocyte
annotated property: definition
annotated target: An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds.
database_cross_reference: GOC:add
database_cross_reference: GOC:tfm
database_cross_reference: PMID:15946868
database_cross_reference: PMID:2037622

nucleate erythrocyte
type: Class
equivalent class: Class
  intersection of: erythrocyte
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002505
subclass of: erythrocyte
subclass of: nucleate cell
subclass of: Restriction
  on property: develops_from
  some values from: nucleated reticulocyte
definition: An erythrocyte having a nucleus.
has broad synonym: RBC
has broad synonym: red blood cell
has OBO namespace: cell

Axiom
annotated source: nucleate erythrocyte
annotated property: subClassOf
annotated target: erythrocyte
is inferred: true

Axiom
annotated source: nucleate erythrocyte
annotated property: definition
annotated target: An erythrocyte having a nucleus.
database_cross_reference: GOC:add
database_cross_reference: GOc:tfm

angioblastic mesenchymal cell
type: Class
equivalent class: Class
  intersection of: mesenchymal stem cell
  intersection of: Restriction
    on property: has plasma membrane part
    some values from: PR_000001444
  intersection of: Restriction
    on property: has plasma membrane part
    some values from: PR_000002112
  intersection of: Restriction
    on property: has plasma membrane part
    some values from: PR_000016043
subclass of: mesenchymal stem cell
subclass of: progenitor cell
subclass of: Restriction
  on property: has plasma membrane part
  some values from: PR_000001444
subclass of: Restriction
  on property: has plasma membrane part
  some values from: PR_000002112
subclass of: Restriction
  on property: has plasma membrane part
  some values from: PR_000016043
subclass of: Restriction
  on property: develops_from
  some values from: mesenchymal stem cell
definition: A mesenchymal stem cell capable of developing into blood vessel endothelium.
has_exact_synonym: angioblast
has_exact_synonym: chondroplast
has OBO namespace: cell
id: CL:0000566
comment: These cells are reportedly CD31-positive, CD34-positive, CD144-positive, CD309-positive, and TAL1-positive.

Axiom
annotated source: angioblastic mesenchymal cell
annotated property: subClassOf
annotated target: mesenchymal stem cell
is inferred: true

Axiom
annotated source: angioblastic mesenchymal cell
annotated property: definition
annotated target: A mesenchymal stem cell capable of developing into blood vessel endothelium.
database_cross_reference: GOC:dsd
database_cross_reference: GOC:tfm
database_cross_reference: PMID:12768659

cardiac mesenchymal cell
type: Class
equivalent class: Class
  intersection of: mesenchymal cell
  intersection of: Restriction
    on property: develops_into
    some values from: cardiocyte
subclass of: anatomical entity
subclass of: mesenchymal cell
subclass of: Restriction
  on property: develops_into
  some values from: cardiocyte
definition: A mesenchymal cell found in the developing heart and that develops into some part of the heart. These cells derive from intra- and extra-cardiac sources, including the endocardium, epicardium, neural crest, and second heart field.
has OBO namespace: cell

Axiom
annotated source: cardiac mesenchymal cell
annotated property: definition
annotated target: A mesenchymal cell found in the developing heart and that develops into some part of the heart. These cells derive from intra- and extra-cardiac sources, including the endocardium, epicardium, neural crest, and second heart field.
database_cross_reference: PMID:18816864

retinal cone cell
type: Class
subclass of: camera-type eye photoreceptor cell
subclass of: Restriction
  on property: develops_from
  some values from: retinal progenitor cell
definition: One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision.
database_cross_reference: BTO:0001036
database_cross_reference: CALOHA:TS-0866
database_cross_reference: FMA:67748
has OBO namespace: cell
id: CL:0000573

Axiom
annotated source: retinal cone cell
annotated property: definition
annotated target: One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision.
database_cross_reference: MESH:A08.663.650.650.670.100

corneal epithelial cell
type: Class
equivalent class: Class
  intersection of: squamous epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000964
subclass of: squamous epithelial cell
subclass of: general ecto-epithelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000964
definition: An epithelial cell of the cornea.
has alternative id: CL:1000431
database_cross_reference: BTO:0004298
database_cross_reference: CALOHA:TS-0173
database_cross_reference: FMA:70551
has_exact_synonym: epithelial cell of cornea
has OBO namespace: cell

Axiom
annotated source: corneal epithelial cell
annotated property: subClassOf
annotated target: squamous epithelial cell
is inferred: true

Axiom
annotated source: corneal epithelial cell
annotated property: definition
annotated target: An epithelial cell of the cornea.
database_cross_reference: GOC:tfm

Axiom
annotated source: corneal epithelial cell
annotated property: has_exact_synonym
annotated target: epithelial cell of cornea
database_cross_reference: FMA:70551

germ cell
type: Class
subclass of: germ line cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0048609
definition: The reproductive cell in multicellular organisms.
database_cross_reference: BTO:0000535
database_cross_reference: VHOG:0001534
database_cross_reference: WBbt:0006796
has OBO namespace: cell
id: CL:0000586

Axiom
annotated source: germ cell
annotated property: subClassOf
annotated target: germ line cell
is inferred: true

Axiom
annotated source: germ cell
annotated property: definition
annotated target: The reproductive cell in multicellular organisms.
database_cross_reference: MESH:A05.360.490

androgen secreting cell
type: Class
equivalent class: Class
  intersection of: secretory cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0035935
subclass of: steroid hormone secreting cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0035935
definition: A steroid hormone secreting cell that secretes androgen.
has OBO namespace: cell
id: CL:0000593

Axiom
annotated source: androgen secreting cell
annotated property: definition
annotated target: A steroid hormone secreting cell that secretes androgen.
database_cross_reference: GOC:tfm

enucleate erythrocyte
type: Class
equivalent class: Class
  intersection of: erythrocyte
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001405
subclass of: anucleate cell
subclass of: erythrocyte
subclass of: Restriction
  on property: develops_from
  some values from: enucleated reticulocyte
definition: An erythrocyte lacking a nucleus.
has broad synonym: RBC
has broad synonym: red blood cell
has OBO namespace: cell

Axiom
annotated source: enucleate erythrocyte
annotated property: subClassOf
annotated target: erythrocyte
is inferred: true

Axiom
annotated source: enucleate erythrocyte
annotated property: definition
annotated target: An erythrocyte lacking a nucleus.
database_cross_reference: GOC:add
database_cross_reference: GOC:tfm

retinal rod cell
type: Class
subclass of: camera-type eye photoreceptor cell
subclass of: Restriction
  on property: develops_from
  some values from: retinal progenitor cell
definition: One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision.
database_cross_reference: BTO:0001024
database_cross_reference: CALOHA:TS-0870
database_cross_reference: FMA:67747
has OBO namespace: cell
id: CL:0000604

Axiom
annotated source: retinal rod cell
annotated property: definition
annotated target: One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision.
database_cross_reference: MESH:A08.663.650.650.670.650

supporting cell
type: Class
subclass of: native cell
definition: A cell whose primary function is to support other cell types.
database_cross_reference: BTO:0002315
has_exact_synonym: supportive cell
has OBO namespace: cell
id: CL:0000630
label: supportive cell

Axiom
annotated source: supporting cell
annotated property: definition
annotated target: A cell whose primary function is to support other cell types.
database_cross_reference: FB:ma
database_cross_reference: GOC:tfm

collagen secreting cell
type: Class
subclass of: extracellular matrix secreting cell
definition: An extracellular matrix secreting cell that secretes collagen.
has OBO namespace: cell
id: CL:0000667

Axiom
annotated source: collagen secreting cell
annotated property: definition
annotated target: An extracellular matrix secreting cell that secretes collagen.
database_cross_reference: GOC:tfm

primordial germ cell
type: Class
equivalent class: Class
  intersection of: germ line cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000922
  intersection of: Restriction
    on property: capable of
    some values from: GO_0048870
subclass of: germ line cell
subclass of: motile cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000922
definition: A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells.
database_cross_reference: FMA:70567
has_exact_synonym: gonocyte
has_exact_synonym: primitive germ cell
has OBO namespace: cell

Axiom
annotated source: primordial germ cell
annotated property: subClassOf
annotated target: germ line cell
is inferred: true

Axiom
annotated source: primordial germ cell
annotated property: subClassOf
annotated target: motile cell
is inferred: true

Axiom
annotated source: primordial germ cell
annotated property: definition
annotated target: A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells.
database_cross_reference: GOC:tfm
database_cross_reference: PMID:1381289

muscle precursor cell
type: Class
equivalent class: Class
  intersection of: precursor cell
  intersection of: Restriction
    on property: develops_into
    some values from: muscle cell
subclass of: anatomical entity
subclass of: non-terminally differentiated cell
subclass of: somatic cell
subclass of: Restriction
  on property: develops_from
  some values from: mesodermal cell
subclass of: Restriction
  on property: develops_into
  some values from: muscle cell
definition: A non-terminally differentiated cell that is capable of developing into a muscle cell.
has OBO namespace: cell
id: CL:0000680

Axiom
annotated source: muscle precursor cell
annotated property: definition
annotated target: A non-terminally differentiated cell that is capable of developing into a muscle cell.
database_cross_reference: GOC:add

PP cell
type: Class
subclass of: enteroendocrine cell
subclass of: peptide hormone secreting cell
definition: A cell that stores and secretes pancreatic polypeptide hormone.
database_cross_reference: FMA:62938
database_cross_reference: FMA:83409
has_exact_synonym: type F enteroendocrine cell
has OBO namespace: cell

Axiom
annotated source: PP cell
annotated property: definition
annotated target: A cell that stores and secretes pancreatic polypeptide hormone.
database_cross_reference: GOC:tfm
database_cross_reference: JB:jb
database_cross_reference: PMID:15153415

neurecto-epithelial cell
type: Class
equivalent class: Class
  intersection of: ecto-epithelial cell
  intersection of: Restriction
    on property: develops_from
    some values from: neurectodermal cell
subclass of: columnar/cuboidal epithelial cell
subclass of: ecto-epithelial cell
subclass of: Restriction
  on property: develops_from
  some values from: neurectodermal cell
definition: Epithelial cells derived from neural plate and neural crest.
has broad synonym: neuroepithelial cell
database_cross_reference: BTO:0004301
database_cross_reference: FMA:70557
has OBO namespace: cell
id: CL:0000710
comment: The term "neuroepithelial cell" is used to describe both this cell type and sensory epithelial cell (CL:0000098).

Axiom
annotated source: neurecto-epithelial cell
annotated property: definition
annotated target: Epithelial cells derived from neural plate and neural crest.
database_cross_reference: GOC:tfm

somatic stem cell
type: Class
equivalent class: Class
  intersection of: stem cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0048103
subclass of: stem cell
subclass of: somatic cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0048103
definition: A stem cell that can give rise to cell types of the body other than those of the germ-line.
database_cross_reference: CALOHA:TS-2086
database_cross_reference: FMA:63368
has OBO namespace: cell
id: CL:0000723

Axiom
annotated source: somatic stem cell
annotated property: subClassOf
annotated target: stem cell
is inferred: true

Axiom
annotated source: somatic stem cell
annotated property: definition
annotated target: A stem cell that can give rise to cell types of the body other than those of the germ-line.
database_cross_reference: GO:0048103

striated muscle cell
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: has part
    some values from: GO_0030017
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001410
subclass of: muscle cell
subclass of: Restriction
  on property: has part
  some values from: GO_0030017
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0001410
disjoint with: non-striated muscle cell
definition: Muscle cell which has as its direct parts myofilaments organized into sarcomeres.
database_cross_reference: BTO:0002916
database_cross_reference: CALOHA:TS-2157
database_cross_reference: FMA:86936
has OBO namespace: cell
id: CL:0000737

Axiom
annotated source: striated muscle cell
annotated property: definition
annotated target: Muscle cell which has as its direct parts myofilaments organized into sarcomeres.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0721662544

leukocyte
type: Class
equivalent class: Class
  intersection of: hematopoietic cell
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002505
  intersection of: Restriction
    on property: capable of
    some values from: GO_0001667
subclass of: anatomical entity
subclass of: motile cell
subclass of: hematopoietic cell
subclass of: nucleate cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002405
subclass of: Restriction
  on property: only in taxon
  some values from: NCBITaxon 7742
subclass of: Restriction
  on property: develops_from
  some values from: hematopoietic stem cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0001667
definition: An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue.
database_cross_reference: BTO:0000751
database_cross_reference: CALOHA:TS-0549
database_cross_reference: FMA:62852
has_exact_synonym: immune cell
has_exact_synonym: leucocyte
has_exact_synonym: white blood cell
has OBO namespace: cell

Axiom
annotated source: leukocyte
annotated property: subClassOf
annotated target: hematopoietic cell
is inferred: true

Axiom
annotated source: leukocyte
annotated property: definition
annotated target: An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue.
database_cross_reference: GOC:add
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:978-0-323-05290-0

retinal ganglion cell
type: Class
subclass of: CNS neuron (sensu Vertebrata)
subclass of: Restriction
  on property: has soma location
  some values from: UBERON_0000966
definition: The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve.
database_cross_reference: BTO:0001800
database_cross_reference: FMA:67765
has_exact_synonym: RGC
has_exact_synonym: gangliocyte
has_exact_synonym: ganglion cell of retina
has OBO namespace: cell
id: CL:0000740

Axiom
annotated source: retinal ganglion cell
annotated property: definition
annotated target: The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve.
database_cross_reference: GOC:dph

cardiac muscle cell
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0007100
  intersection of: Restriction
    on property: has part
    some values from: GO_0030017
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002478
  intersection of: Restriction
    on property: participates in
    some values from: GO_0060047
subclass of: striated muscle cell
subclass of: cardiocyte
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0002478
subclass of: Restriction
  on property: participates in
  some values from: GO_0060047
subclass of: Restriction
  on property: develops_from
  some values from: cardiac muscle myoblast
definition: Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei.
has alternative id: FMA:83808
has broad synonym: cardiocyte
database_cross_reference: BTO:0001539
database_cross_reference: CALOHA:TS-0115
database_cross_reference: FMA:14067
has_exact_synonym: cardiac muscle fiber
has_exact_synonym: cardiac myocyte
has_exact_synonym: cardiomyocyte
has_exact_synonym: heart muscle cell
has OBO namespace: cell
id: CL:0000746
comment: This class encompasses the muscle cells responsible for heart* contraction in both vertebrates and arthropods. The ultrastucture of a wide range of arthropod heart cells has been examined including spiders, horseshoe crabs, crustaceans (see Sherman, 1973 and refs therein) and insects (see Lehmacher et al (2012) and refs therein). According to these refs, the cells participating in heart contraction in all cases are transversely striated. Insects hearts additionally contain ostial cells, also transversely striated muscle cells, but which do not participate in heart contraction.

Axiom
annotated source: cardiac muscle cell
annotated property: definition
annotated target: Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei.
database_cross_reference: GOC:mtg_cardiacconduct_nov11
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0323052908
database_cross_reference: PMID:22426062
database_cross_reference: PMID:4711263

Axiom
annotated source: cardiac muscle cell
annotated property: has_exact_synonym
annotated target: cardiac muscle fiber
database_cross_reference: GO:0048739

myeloid cell
type: Class
equivalent class: Class
  intersection of: hematopoietic cell
  intersection of: Restriction
    on property: develops_from
    some values from: common myeloid progenitor
subclass of: anatomical entity
subclass of: hematopoietic cell
subclass of: Restriction
  on property: develops_from
  some values from: common myeloid progenitor
definition: A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage.
database_cross_reference: BTO:0001441
database_cross_reference: CALOHA:TS-0647
has OBO namespace: cell
id: CL:0000763

Axiom
annotated source: myeloid cell
annotated property: subClassOf
annotated target: hematopoietic cell
is inferred: true

Axiom
annotated source: myeloid cell
annotated property: definition
annotated target: A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage.
database_cross_reference: GOC:add

erythroid lineage cell
type: Class
subclass of: myeloid cell
definition: A immature or mature cell in the lineage leading to and including erythrocytes.
has alternative id: CL:0002156
database_cross_reference: CALOHA:TS-0290
database_cross_reference: FMA:62845
database_cross_reference: FMA:83516
has_exact_synonym: erythropoietic cell
has OBO namespace: cell
id: CL:0000764
comment: Note that in FMA erythropoietic cells are types of nucleated erythrocytes and thus don't include erythrocytes.

Axiom
annotated source: erythroid lineage cell
annotated property: definition
annotated target: A immature or mature cell in the lineage leading to and including erythrocytes.
database_cross_reference: GOC:add
database_cross_reference: GOC:tfm

erythroblast
type: Class
equivalent class: Class
  intersection of: erythroid lineage cell
  intersection of: Restriction
    on property: has part
    some values from: GO_0005634
  intersection of: Restriction
    on property: capable of
    some values from: GO_0030218
  intersection of: Restriction
    on property: lacks_part
    some values from: GO_0005730
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001002
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001004
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001012
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001020
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001024
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001083
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001084
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001289
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001839
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001889
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000002978
subclass of: erythroid lineage cell
subclass of: progenitor cell
subclass of: Restriction
  on property: has part
  some values from: GO_0005634
subclass of: Restriction
  on property: develops_from
  some values from: proerythroblast
subclass of: Restriction
  on property: capable of
  some values from: GO_0030218
subclass of: Restriction
  on property: lacks_part
  some values from: GO_0005730
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001002
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001004
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001012
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001020
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001024
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001083
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001084
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001289
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001839
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001889
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000002978
definition: A nucleated precursor of an erythrocyte that lacks hematopoietic lineage markers.
database_cross_reference: BTO:0001571
database_cross_reference: CALOHA:TS-0289
database_cross_reference: FMA:83504
has_exact_synonym: normoblast
has OBO namespace: cell
id: CL:0000765

Axiom
annotated source: erythroblast
annotated property: subClassOf
annotated target: erythroid lineage cell
is inferred: true

Axiom
annotated source: erythroblast
annotated property: definition
annotated target: A nucleated precursor of an erythrocyte that lacks hematopoietic lineage markers.
database_cross_reference: GOC:add
database_cross_reference: ISBN:0721601464
database_cross_reference: PMID:18174176

myeloid leukocyte
type: Class
equivalent class: Class
  intersection of: leukocyte
  intersection of: Restriction
    on property: develops_from
    some values from: common myeloid progenitor
subclass of: leukocyte
subclass of: myeloid cell
definition: A cell of the monocyte, granulocyte, or mast cell lineage.
has OBO namespace: cell

Axiom
annotated source: myeloid leukocyte
annotated property: subClassOf
annotated target: leukocyte
is inferred: true

Axiom
annotated source: myeloid leukocyte
annotated property: definition
annotated target: A cell of the monocyte, granulocyte, or mast cell lineage.
database_cross_reference: GOC:add

hematopoietic multipotent progenitor cell
type: Class
equivalent class: Class
  intersection of: hematopoietic cell
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001402
  intersection of: Restriction
    on property: has plasma membrane part
    some values from: PR_000001003
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001002
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001004
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001012
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001020
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001024
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001083
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001084
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001289
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001839
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001869
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001889
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000002978
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000002981
subclass of: anatomical entity
subclass of: hematopoietic precursor cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0001402
subclass of: Restriction
  on property: has plasma membrane part
  some values from: PR_000001003
subclass of: Restriction
  on property: develops_from
  some values from: hematopoietic stem cell
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001002
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001004
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001012
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001020
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001024
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001083
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001084
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001289
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001839
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001869
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001889
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000002978
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000002981
disjoint with: hematopoietic oligopotent progenitor cell
definition: A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans.
database_cross_reference: BTO:0000725
database_cross_reference: CALOHA:TS-0448
has_exact_synonym: MPP
has_exact_synonym: hemopoietic progenitor cell
has OBO namespace: cell
id: CL:0000837
comment: Markers differ between mouse and human.

Axiom
annotated source: hematopoietic multipotent progenitor cell
annotated property: definition
annotated target: A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans.
database_cross_reference: GOC:add
database_cross_reference: GOC:tfm
database_cross_reference: PMID:19022770

myeloid lineage restricted progenitor cell
type: Class
equivalent class: Class
  intersection of: hematopoietic lineage restricted progenitor cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0030099
subclass of: hematopoietic lineage restricted progenitor cell
subclass of: progenitor cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0030099
definition: A progenitor cell restricted to the myeloid lineage.
has broad synonym: myeloid progenitor cell
database_cross_reference: BTO:0004730
database_cross_reference: CALOHA:TS-2099
database_cross_reference: FMA:70339
has OBO namespace: cell
id: CL:0000839
comment: Note that this is a class of cell types, not an identified single cell type.

Axiom
annotated source: myeloid lineage restricted progenitor cell
annotated property: subClassOf
annotated target: hematopoietic lineage restricted progenitor cell
is inferred: true

Axiom
annotated source: myeloid lineage restricted progenitor cell
annotated property: definition
annotated target: A progenitor cell restricted to the myeloid lineage.
database_cross_reference: GOC:add
database_cross_reference: GOC:tfm
database_cross_reference: PMID:19022770

mononuclear cell
type: Class
equivalent class: Class
  intersection of: leukocyte
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001407
subclass of: single nucleate cell
subclass of: leukocyte
definition: A leukocyte with a single non-segmented nucleus in the mature form.
database_cross_reference: BTO:0000878
database_cross_reference: CALOHA:TS-0768
database_cross_reference: FMA:86713
has_exact_synonym: mononuclear leukocyte
has_narrow_synonym: peripheral blood mononuclear cell
has OBO namespace: cell

Axiom
annotated source: mononuclear cell
annotated property: subClassOf
annotated target: leukocyte
is inferred: true

Axiom
annotated source: mononuclear cell
annotated property: definition
annotated target: A leukocyte with a single non-segmented nucleus in the mature form.
database_cross_reference: GOC:add

hematopoietic cell
type: Class
subclass of: animal cell
subclass of: somatic cell
definition: A cell of a hematopoietic lineage.
database_cross_reference: BTO:0000574
database_cross_reference: CALOHA:TS-2017
database_cross_reference: FMA:70366
database_cross_reference: FMA:83598
has_exact_synonym: haematopoietic cell
has_exact_synonym: haemopoietic cell
has_exact_synonym: hemopoietic cell
has OBO namespace: cell
id: CL:0000988

Axiom
annotated source: hematopoietic cell
annotated property: definition
annotated target: A cell of a hematopoietic lineage.
database_cross_reference: GOC:add
database_cross_reference: GO_REF:0000031

bone cell
type: Class
equivalent class: Class
  intersection of: animal cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001474
subclass of: independent continuant
subclass of: animal cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001474
definition: A connective tissue cell found in bone.
created by: adiehl
creation date: 2011-11-16T04:28:16Z
has OBO namespace: cell
id: CL:0001035

Axiom
annotated source: bone cell
annotated property: subClassOf
annotated target: animal cell
is inferred: true

Axiom
annotated source: bone cell
annotated property: definition
annotated target: A connective tissue cell found in bone.
database_cross_reference: GOC:add
database_cross_reference: GO_REF:0000034

hematopoietic oligopotent progenitor cell, lineage-negative
type: Class
equivalent class: Class
  intersection of: hematopoietic oligopotent progenitor cell
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001401
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001002
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001004
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001012
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001020
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001024
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001083
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001084
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001289
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001839
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001889
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000002978
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000002981
subclass of: hematopoietic oligopotent progenitor cell
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001002
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001004
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001012
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001020
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001024
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001083
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001084
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001289
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001839
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001889
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000002978
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000002981
definition: A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. Cell lacks hematopoeitic lineage markers.
created by: tmeehan
creation date: 2010-01-06T03:43:27Z
has OBO namespace: cell

Axiom
annotated source: hematopoietic oligopotent progenitor cell, lineage-negative
annotated property: definition
annotated target: A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. Cell lacks hematopoeitic lineage markers.
database_cross_reference: GOC:tfm
database_cross_reference: PMID:19022770

erythroid progenitor cell, mammalian
type: Class
equivalent class: Class
  intersection of: erythroid progenitor cell
  intersection of: Restriction
    on property: has plasma membrane part
    some values from: PR_000001945
  intersection of: Restriction
    on property: capable of
    some values from: GO_0030218
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001002
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001004
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001012
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001020
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001024
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001083
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001084
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001289
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001839
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000001889
  intersection of: Restriction
    on property: lacks_plasma_membrane_part
    some values from: PR_000002978
subclass of: erythroid progenitor cell
subclass of: Restriction
  on property: has plasma membrane part
  some values from: PR_000001945
subclass of: Restriction
  on property: capable of
  some values from: GO_0030218
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001002
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001004
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001012
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001020
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001024
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001083
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001084
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001289
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001839
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000001889
subclass of: Restriction
  on property: lacks_plasma_membrane_part
  some values from: PR_000002978
definition: A progenitor cell committed to the erythroid lineage. This cell is ter119-positive but lacks expression of other hematopoietic lineage markers (lin-negative).
database_cross_reference: BTO:0004911
has OBO namespace: cell
has_related_synonym: BFU-E
has_related_synonym: CFU-E
has_related_synonym: blast forming unit erythroid
has_related_synonym: burst forming unit erythroid
has_related_synonym: colony forming unit erythroid
has_related_synonym: erythroid stem cell

Axiom
annotated source: erythroid progenitor cell, mammalian
annotated property: definition
annotated target: A progenitor cell committed to the erythroid lineage. This cell is ter119-positive but lacks expression of other hematopoietic lineage markers (lin-negative).
database_cross_reference: GOC:add
database_cross_reference: ISBN:0721601464

hematopoietic lineage restricted progenitor cell
type: Class
equivalent class: Class
  intersection of: hematopoietic cell
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001400
subclass of: anatomical entity
subclass of: hematopoietic precursor cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0001400
subclass of: Restriction
  on property: develops_from
  some values from: hematopoietic oligopotent progenitor cell
disjoint with: hematopoietic oligopotent progenitor cell
definition: A hematopoietic progenitor cell that is capable of developing into only one lineage of hematopoietic cells.
created by: tmeehan
creation date: 2010-01-06T03:43:20Z
has OBO namespace: cell
id: CL:0002031

Axiom
annotated source: hematopoietic lineage restricted progenitor cell
annotated property: definition
annotated target: A hematopoietic progenitor cell that is capable of developing into only one lineage of hematopoietic cells.
database_cross_reference: GOC:tfm
database_cross_reference: PMID:19022770

hematopoietic oligopotent progenitor cell
type: Class
equivalent class: Class
  intersection of: hematopoietic cell
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001401
subclass of: anatomical entity
subclass of: hematopoietic precursor cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0001401
subclass of: Restriction
  on property: develops_from
  some values from: hematopoietic multipotent progenitor cell
definition: A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities.
created by: tmeehan
creation date: 2010-01-06T03:43:27Z
has OBO namespace: cell
id: CL:0002032
comment: This cell type is intended to be compatible with any vertebrate hematopoietic oligopotent progenitor cell. For mammalian hematopoietic oligopotent progenitor cells known to be lineage-negative, please use the term 'hematopoietic oligopotent progenitor cell' (CL_0001060).

Axiom
annotated source: hematopoietic oligopotent progenitor cell
annotated property: definition
annotated target: A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities.
database_cross_reference: GOC:tfm
database_cross_reference: PMID:19022770
database_cross_reference: https://orcid.org/0000-0001-5208-3432

type A enteroendocrine cell
type: Class
equivalent class: Class
  intersection of: enteroendocrine cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0070091
subclass of: enteroendocrine cell
subclass of: glucagon secreting cell
definition: An enteroendocrine cell that produces glucagon.
created by: tmeehan
creation date: 2010-09-10T10:48:54Z
database_cross_reference: FMA:62939
has OBO namespace: cell

Axiom
annotated source: type A enteroendocrine cell
annotated property: definition
annotated target: An enteroendocrine cell that produces glucagon.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0412046911

Purkinje myocyte
type: Class
subclass of: specialized cardiac myocyte
definition: Specialized cardiac myocyte that is subendocardially interspersed with the regular cardiac muscle cell. They are uninucleate cylindrical cells, associated end-to-end in long rows, continue from the node to the atrioventricular bundle; relatively short compared to ordinary myocytes but are nearly twice their diameter.
created by: tmeehan
creation date: 2010-06-28T08:36:15Z
database_cross_reference: BTO:0001032
database_cross_reference: FMA:14146
has_exact_synonym: Purkinje cell fiber
has_exact_synonym: Purkinje muscle cell
has_exact_synonym: myocytus conducens cardiacus
has OBO namespace: cell
id: CL:0002068

Axiom
annotated source: Purkinje myocyte
annotated property: definition
annotated target: Specialized cardiac myocyte that is subendocardially interspersed with the regular cardiac muscle cell. They are uninucleate cylindrical cells, associated end-to-end in long rows, continue from the node to the atrioventricular bundle; relatively short compared to ordinary myocytes but are nearly twice their diameter.
database_cross_reference: FMA:0412046911
database_cross_reference: GOC:tfm
database_cross_reference: PMID:19939742

nodal myocyte
type: Class
subclass of: specialized cardiac myocyte
definition: A specialized cardiac myocyte in the sinoatrial and atrioventricular nodes. The cell is slender and fusiform confined to the nodal center, circumferentially arranged around the nodal artery.
created by: tmeehan
creation date: 2010-06-29T11:41:37Z
has broad synonym: pacemaker cell
database_cross_reference: BTO:0004190
database_cross_reference: FMA:67101
has_exact_synonym: P cell
has_exact_synonym: cardiac pacemaker cell
has_exact_synonym: myocytus nodalis
has OBO namespace: cell
id: CL:0002072

Axiom
annotated source: nodal myocyte
annotated property: definition
annotated target: A specialized cardiac myocyte in the sinoatrial and atrioventricular nodes. The cell is slender and fusiform confined to the nodal center, circumferentially arranged around the nodal artery.
database_cross_reference: FMA:67101
database_cross_reference: GOC:tfm

Axiom
annotated source: nodal myocyte
annotated property: has_exact_synonym
annotated target: cardiac pacemaker cell
database_cross_reference: GOC:pr

transitional myocyte
type: Class
subclass of: specialized cardiac myocyte
definition: Specialized cardiac myocyte which is in the internodal tract and atrioventricular node. The cell is more slender than ordinary atrial myocytes and has more myofibrils than nodal myocytes.
created by: tmeehan
creation date: 2010-06-29T02:39:32Z
database_cross_reference: FMA:67142
has OBO namespace: cell
id: CL:0002073

Axiom
annotated source: transitional myocyte
annotated property: definition
annotated target: Specialized cardiac myocyte which is in the internodal tract and atrioventricular node. The cell is more slender than ordinary atrial myocytes and has more myofibrils than nodal myocytes.
database_cross_reference: FMA:67142
database_cross_reference: GOC:tfm

myocardial endocrine cell
type: Class
subclass of: endocrine cell
subclass of: specialized cardiac myocyte
definition: The myoendocrine cellis a specialized myocyte localized mainly in the right and left atrial appendages, and also scattered within other areas of the atria and along the conductive system in the ventricular septum. The most conspicuous feature distinguishing myoendocrine cells from other atrial myoctyes is the presence of membane-bounded secretory granules (these granules contain precursor of cardiodilatins or atrial natriuretic polypeptides).
created by: tmeehan
creation date: 2010-06-29T11:50:47Z
database_cross_reference: FMA:67111
has OBO namespace: cell
id: CL:0002074

Axiom
annotated source: myocardial endocrine cell
annotated property: definition
annotated target: The myoendocrine cellis a specialized myocyte localized mainly in the right and left atrial appendages, and also scattered within other areas of the atria and along the conductive system in the ventricular septum. The most conspicuous feature distinguishing myoendocrine cells from other atrial myoctyes is the presence of membane-bounded secretory granules (these granules contain precursor of cardiodilatins or atrial natriuretic polypeptides).
database_cross_reference: FMA:67111
database_cross_reference: GOC:tfm

endo-epithelial cell
type: Class
subclass of: anatomical entity
subclass of: epithelial cell
subclass of: somatic cell
subclass of: Restriction
  on property: develops_from
  some values from: endodermal cell
definition: An epithelial cell derived from endoderm.
created by: tmeehan
creation date: 2010-06-29T03:38:14Z
database_cross_reference: FMA:69075
has OBO namespace: cell

Axiom
annotated source: endo-epithelial cell
annotated property: definition
annotated target: An epithelial cell derived from endoderm.
database_cross_reference: FMA:69075
database_cross_reference: GOC:tfm

ecto-epithelial cell
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: develops_from
    some values from: ectodermal cell
subclass of: anatomical entity
subclass of: epithelial cell
subclass of: somatic cell
subclass of: Restriction
  on property: develops_from
  some values from: ectodermal cell
definition: An epithelial cell derived from ectoderm.
created by: tmeehan
creation date: 2010-06-29T03:38:22Z
database_cross_reference: FMA:69074
has OBO namespace: cell
id: CL:0002077

Axiom
annotated source: ecto-epithelial cell
annotated property: definition
annotated target: An epithelial cell derived from ectoderm.
database_cross_reference: FMA:69074
database_cross_reference: GOC:tfm

meso-epithelial cell
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: develops_from
    some values from: mesodermal cell
subclass of: anatomical entity
subclass of: epithelial cell
subclass of: somatic cell
subclass of: Restriction
  on property: develops_from
  some values from: mesodermal cell
definition: Epithelial cell derived from mesoderm or mesenchyme.
created by: tmeehan
creation date: 2010-06-29T03:49:14Z
database_cross_reference: FMA:69076
has_exact_synonym: epithelial mesenchymal cell
has OBO namespace: cell
id: CL:0002078

Axiom
annotated source: meso-epithelial cell
annotated property: definition
annotated target: Epithelial cell derived from mesoderm or mesenchyme.
database_cross_reference: FMA:69076
database_cross_reference: GOC:tfm

specialized cardiac myocyte
type: Class
subclass of: cardiac muscle cell
definition: A cardiac myocyte that is an excitable cells in the myocardium, specifically in the conducting system of heart.
created by: tmeehan
creation date: 2010-07-21T01:33:38Z
database_cross_reference: FMA:67968
has OBO namespace: cell
id: CL:0002086

Axiom
annotated source: specialized cardiac myocyte
annotated property: definition
annotated target: A cardiac myocyte that is an excitable cells in the myocardium, specifically in the conducting system of heart.
database_cross_reference: FMA:67968
database_cross_reference: GOC:tfm

bone marrow cell
type: Class
equivalent class: Class
  intersection of: bone cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002371
subclass of: anatomical entity
subclass of: bone cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002371
definition: A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells.
created by: tmeehan
creation date: 2010-07-22T04:48:15Z
database_cross_reference: BTO:0004850
database_cross_reference: FMA:83621
has OBO namespace: cell
id: CL:0002092
comment: MH consider whether bone marrow cells are bone cells in the structural sense vs. being part of bone organ sense.

Axiom
annotated source: bone marrow cell
annotated property: subClassOf
annotated target: bone cell
is inferred: true

Axiom
annotated source: bone marrow cell
annotated property: definition
annotated target: A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0618947256

hilus cell of ovary
type: Class
subclass of: androgen secreting cell
subclass of: stromal cell of ovary
definition: A cell in the hilum of the ovary that produces androgens.
created by: tmeehan
creation date: 2010-08-23T11:18:18Z
database_cross_reference: FMA:18710
has_exact_synonym: hilar cell of ovary
has OBO namespace: cell
id: CL:0002095

Axiom
annotated source: hilus cell of ovary
annotated property: definition
annotated target: A cell in the hilum of the ovary that produces androgens.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:068340007X

stromal cell of ovary
type: Class
equivalent class: Class
  intersection of: stromal cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000992
subclass of: stromal cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000992
definition: A stomal cell of the ovary
created by: tmeehan
creation date: 2010-08-23T12:10:31Z
database_cross_reference: FMA:72299
has_exact_synonym: ovarian stromal cell
has OBO namespace: cell
id: CL:0002132

Axiom
annotated source: stromal cell of ovary
annotated property: definition
annotated target: A stomal cell of the ovary
database_cross_reference: GOC:tfm

Axiom
annotated source: stromal cell of ovary
annotated property: has_exact_synonym
annotated target: ovarian stromal cell
database_cross_reference: GOC:cjm

endothelial cell of vascular tree
type: Class
subclass of: endothelial cell
definition: An endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels.
created by: tmeehan
creation date: 2010-08-24T02:06:40Z
database_cross_reference: BTO:0001854
database_cross_reference: CALOHA:TS-1106
database_cross_reference: FMA:67755
has_exact_synonym: vascular endothelial cell
has_narrow_synonym: cubodial endothelial cell of vascular tree
has OBO namespace: cell
id: CL:0002139
comment: These cells are reportedly CD31-positive, CD34-positive, CD144-positive, TAL1-positive.

Axiom
annotated source: endothelial cell of vascular tree
annotated property: definition
annotated target: An endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels.
database_cross_reference: GOC:dsd
database_cross_reference: GOC:tfm
database_cross_reference: PMID:12768659

capillary endothelial cell
type: Class
equivalent class: Class
  intersection of: blood vessel endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001915
subclass of: blood vessel endothelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001915
definition: An endothelial cell found in capillaries.
created by: tmeehan
creation date: 2010-08-24T10:15:00Z
database_cross_reference: BTO:0004956
database_cross_reference: CALOHA:TS-0112
database_cross_reference: FMA:67756
has OBO namespace: cell

Axiom
annotated source: capillary endothelial cell
annotated property: subClassOf
annotated target: blood vessel endothelial cell
is inferred: true

Axiom
annotated source: capillary endothelial cell
annotated property: definition
annotated target: An endothelial cell found in capillaries.
database_cross_reference: GOC:tfm

general ecto-epithelial cell
type: Class
subclass of: ecto-epithelial cell
definition: Epithelial cells derived from general body ectoderm and ectoderm placodes.
created by: tmeehan
creation date: 2010-08-26T08:31:08Z
database_cross_reference: FMA:70556
has OBO namespace: cell

Axiom
annotated source: general ecto-epithelial cell
annotated property: definition
annotated target: Epithelial cells derived from general body ectoderm and ectoderm placodes.
database_cross_reference: GOC:tfm

epithelial cell of stomach
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000945
subclass of: epithelial cell of alimentary canal
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000945
definition: An epithelial cell found in the lining of the stomach.
created by: tmeehan
creation date: 2010-08-25T03:22:08Z
has alternative id: CL:1000399
database_cross_reference: FMA:62948
has OBO namespace: cell

Axiom
annotated source: epithelial cell of stomach
annotated property: subClassOf
annotated target: epithelial cell of alimentary canal
is inferred: true

Axiom
annotated source: epithelial cell of stomach
annotated property: definition
annotated target: An epithelial cell found in the lining of the stomach.
database_cross_reference: GOC:tfm

mucous cell of stomach
type: Class
equivalent class: Class
  intersection of: epithelial cell of stomach
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001199
subclass of: glandular cell of stomach
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001199
definition: A mucous cell in the epithelium of the stomach.
created by: tmeehan
creation date: 2010-08-25T03:38:51Z
has alternative id: CL:1000404
database_cross_reference: FMA:63464
has OBO namespace: cell

Axiom
annotated source: mucous cell of stomach
annotated property: definition
annotated target: A mucous cell in the epithelium of the stomach.
database_cross_reference: GOC:tfm

stem cell of gastric gland
type: Class
equivalent class: Class
  intersection of: multi fate stem cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000325
subclass of: multi fate stem cell
subclass of: exocrine cell
subclass of: mucous cell of stomach
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000325
definition: A stomach epithelial cell that is olumnar in form with a few short apical microvilli; relatively undifferentiated mitotic cell from which other types of gland are derived; few in number, situated in the isthmus region of the gland and base of the gastric pit.
created by: tmeehan
creation date: 2010-08-25T03:57:08Z
has alternative id: CL:1000400
database_cross_reference: FMA:62953
has OBO namespace: cell

Axiom
annotated source: stem cell of gastric gland
annotated property: subClassOf
annotated target: multi fate stem cell
is inferred: true

Axiom
annotated source: stem cell of gastric gland
annotated property: definition
annotated target: A stomach epithelial cell that is olumnar in form with a few short apical microvilli; relatively undifferentiated mitotic cell from which other types of gland are derived; few in number, situated in the isthmus region of the gland and base of the gastric pit.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0517223651

vertebrate lens cell
type: Class
subclass of: anatomical entity
subclass of: epithelial cell
subclass of: crystallin accumulating cell
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000965
definition: A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye.
created by: tmeehan
creation date: 2010-09-07T10:38:03Z
database_cross_reference: FMA:70950
has OBO namespace: cell

Axiom
annotated source: vertebrate lens cell
annotated property: definition
annotated target: A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0721662544

lens epithelial cell
type: Class
equivalent class: Class
  intersection of: columnar/cuboidal epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001803
subclass of: columnar/cuboidal epithelial cell
subclass of: vertebrate lens cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001803
definition: A cell of the cuboidal epithelium that covers the lens. The cells of the lens epithelium regulate most of the homeostatic functions of the lens. As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. The cells of the lens epithelium also serve as the progenitors for new lens fibers. It constantly lays down fibers in the embryo, fetus, infant, and adult, and continues to lay down fibers for lifelong growth.
created by: tmeehan
creation date: 2010-09-07T10:45:47Z
database_cross_reference: FMA:67559
has OBO namespace: cell

Axiom
annotated source: lens epithelial cell
annotated property: subClassOf
annotated target: columnar/cuboidal epithelial cell
is inferred: true

Axiom
annotated source: lens epithelial cell
annotated property: definition
annotated target: A cell of the cuboidal epithelium that covers the lens. The cells of the lens epithelium regulate most of the homeostatic functions of the lens. As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. The cells of the lens epithelium also serve as the progenitors for new lens fibers. It constantly lays down fibers in the embryo, fetus, infant, and adult, and continues to lay down fibers for lifelong growth.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0721662544
database_cross_reference: http://en.wikipedia.org/wiki/Lens_%28anatomy%29#Lens_epithelium

marrow fibroblast
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002371
subclass of: fibroblast
subclass of: bone marrow cell
definition: A fibroblast in the bone marrow.
created by: tmeehan
creation date: 2010-09-07T02:25:18Z
database_cross_reference: FMA:84377
has OBO namespace: cell
id: CL:0002240

Axiom
annotated source: marrow fibroblast
annotated property: definition
annotated target: A fibroblast in the bone marrow.
database_cross_reference: GOC:tfm

nucleate cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002505
subclass of: native cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0002505
definition: A cell containing at least one nucleus.
created by: tmeehan
creation date: 2010-09-07T03:32:33Z
database_cross_reference: FMA:67513
has OBO namespace: cell
id: CL:0002242

Axiom
annotated source: nucleate cell
annotated property: definition
annotated target: A cell containing at least one nucleus.
database_cross_reference: GOC:tfm

peripheral blood stem cell
type: Class
equivalent class: Class
  intersection of: hematopoietic stem cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000178
subclass of: hematopoietic stem cell
subclass of: circulating cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000178
definition: A hematopoeitic stem cell found in the blood. Normally found in very limited numbers in the peripheral circulation (less than 0.1% of all nucleated cells).
created by: tmeehan
creation date: 2010-09-07T03:57:09Z
database_cross_reference: BTO:0002669
database_cross_reference: FMA:86711
has_exact_synonym: PBSC
has OBO namespace: cell

Axiom
annotated source: peripheral blood stem cell
annotated property: subClassOf
annotated target: hematopoietic stem cell
is inferred: true

Axiom
annotated source: peripheral blood stem cell
annotated property: definition
annotated target: A hematopoeitic stem cell found in the blood. Normally found in very limited numbers in the peripheral circulation (less than 0.1% of all nucleated cells).
database_cross_reference: GOC:tfm

epithelial cell of alimentary canal
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001555
subclass of: endo-epithelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001555
definition: An epithelial cell of the musculomembranous digestive tube extending from the mouth to the anus.
created by: tmeehan
creation date: 2010-09-08T09:26:53Z
has OBO namespace: cell

Axiom
annotated source: epithelial cell of alimentary canal
annotated property: definition
annotated target: An epithelial cell of the musculomembranous digestive tube extending from the mouth to the anus.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0721662544

epithelial cell of esophagus
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001043
subclass of: epithelial cell of alimentary canal
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001043
definition: An epithelial cell of the esophagus.
created by: tmeehan
creation date: 2010-09-08T09:28:20Z
has alternative id: CL:1000402
database_cross_reference: FMA:63071
has OBO namespace: cell

Axiom
annotated source: epithelial cell of esophagus
annotated property: subClassOf
annotated target: epithelial cell of alimentary canal
is inferred: true

Axiom
annotated source: epithelial cell of esophagus
annotated property: definition
annotated target: An epithelial cell of the esophagus.
database_cross_reference: GOC:tfm

endothelial cell of sinusoid
type: Class
equivalent class: Class
  intersection of: endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0003909
subclass of: endothelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0003909
definition: An endothelial cell that lines any of the venous cavities through which blood passes in various glands and organs such as the spleen and liver.
created by: tmeehan
creation date: 2010-09-14T10:57:26Z
has alternative id: CL:1000403
database_cross_reference: FMA:63134
has OBO namespace: cell

Axiom
annotated source: endothelial cell of sinusoid
annotated property: definition
annotated target: An endothelial cell that lines any of the venous cavities through which blood passes in various glands and organs such as the spleen and liver.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0618947256

type A cell of stomach
type: Class
equivalent class: Class
  intersection of: type A enteroendocrine cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000945
subclass of: type A enteroendocrine cell
subclass of: glandular cell of stomach
definition: A type of enteroendocrine cell found in the stomach that secretes glucagon.
created by: tmeehan
creation date: 2010-09-10T10:54:42Z
database_cross_reference: FMA:83411
has OBO namespace: cell

Axiom
annotated source: type A cell of stomach
annotated property: definition
annotated target: A type of enteroendocrine cell found in the stomach that secretes glucagon.
database_cross_reference: GOC:tfm

epithelial cell of skin gland
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002419
subclass of: general ecto-epithelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002419
definition: An epithelial cell of a skin gland.
created by: tmeehan
creation date: 2010-09-14T12:00:07Z
database_cross_reference: FMA:70657
has_exact_synonym: epithelial cell of gland of skin
has OBO namespace: cell

Axiom
annotated source: epithelial cell of skin gland
annotated property: definition
annotated target: An epithelial cell of a skin gland.
database_cross_reference: GOC:tfm

neural cell
type: Class
equivalent class: Class
  intersection of: animal cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001016
subclass of: anatomical entity
subclass of: animal cell
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001016
definition: A cell that is part of the nervous system.
created by: tmeehan
creation date: 2010-09-15T01:34:57Z
database_cross_reference: CALOHA:TS-2040
database_cross_reference: FMA:70333
has OBO namespace: cell
id: CL:0002319

Axiom
annotated source: neural cell
annotated property: definition
annotated target: A cell that is part of the nervous system.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0618947256

connective tissue cell
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002384
subclass of: independent continuant
subclass of: animal cell
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002384
definition: A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone.
created by: tmeehan
creation date: 2010-09-15T03:01:54Z
has alternative id: CL:1000406
database_cross_reference: CALOHA:TS-2096
database_cross_reference: FMA:63875
has OBO namespace: cell
id: CL:0002320

Axiom
annotated source: connective tissue cell
annotated property: subClassOf
annotated target: somatic cell
is inferred: true

Axiom
annotated source: connective tissue cell
annotated property: definition
annotated target: A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0618947256

embryonic cell (metazoa)
type: Class
subclass of: animal cell
definition: A cell of the embryo.
created by: tmeehan
creation date: 2010-09-15T03:39:21Z
database_cross_reference: CALOHA:TS-0263
database_cross_reference: FMA:82840
database_cross_reference: FMA:82841
database_cross_reference: WBbt:0007028
has OBO namespace: cell
id: CL:0002321

Axiom
annotated source: embryonic cell (metazoa)
annotated property: definition
annotated target: A cell of the embryo.
database_cross_reference: FMA:0618947256

neural crest derived fat cell
type: Class
equivalent class: Class
  intersection of: fat cell
  intersection of: Restriction
    on property: develops_from
    some values from: migratory neural crest cell
subclass of: fat cell
subclass of: Restriction
  on property: develops_from
  some values from: fibroblast neural crest derived
definition: A fat cell derived from a neural crest cell.
created by: tmeehan
creation date: 2010-09-20T02:25:25Z
has OBO namespace: cell
id: CL:0002333

Axiom
annotated source: neural crest derived fat cell
annotated property: definition
annotated target: A fat cell derived from a neural crest cell.
database_cross_reference: GOC:tfm
database_cross_reference: PMID:17507398

endocardial cell
type: Class
equivalent class: Class
  intersection of: endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002165
subclass of: cardiac endothelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002165
definition: An endothelial cell that lines the intracavitary lumen of the heart, separating the circulating blood from the underlying myocardium. This cell type releases a number of vasoactive substances including prostacyclin, nitrous oxide and endothelin.
created by: tmeehan
creation date: 2010-09-21T04:33:05Z
has alternative id: CL:1000475
database_cross_reference: FMA:75621
has_exact_synonym: endocardial endothelial cell
has_exact_synonym: endothelial cell of endocardium
has OBO namespace: cell

Axiom
annotated source: endocardial cell
annotated property: definition
annotated target: An endothelial cell that lines the intracavitary lumen of the heart, separating the circulating blood from the underlying myocardium. This cell type releases a number of vasoactive substances including prostacyclin, nitrous oxide and endothelin.
database_cross_reference: GOC:tfm
database_cross_reference: ISSN:0452-3458

Axiom
annotated source: endocardial cell
annotated property: has_exact_synonym
annotated target: endothelial cell of endocardium
database_cross_reference: FMA:75621

gestational hematopoietic stem cell
type: Class
equivalent class: Class
  intersection of: hematopoietic stem cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000922
subclass of: hematopoietic stem cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000922
definition: A hematopoietic stem cell that exists during embryogenesis.
created by: tmeehan
creation date: 2010-09-22T09:05:13Z
has OBO namespace: cell

Axiom
annotated source: gestational hematopoietic stem cell
annotated property: definition
annotated target: A hematopoietic stem cell that exists during embryogenesis.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:978-60327-246-6

keratocyte
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001777
subclass of: fibroblast neural crest derived
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001777
definition: A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic cell located between the lamellae with a large flattened nucleus and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratin sulfate.
created by: tmeehan
creation date: 2010-09-22T01:57:40Z
has_exact_synonym: corneal fibroblast
has_exact_synonym: corneal keratocyte
has OBO namespace: cell

Axiom
annotated source: keratocyte
annotated property: definition
annotated target: A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic cell located between the lamellae with a large flattened nucleus and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratin sulfate.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:978-0-7020-2958-5

respiratory epithelial cell
type: Class
equivalent class: Class
  intersection of: endo-epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000065
subclass of: endo-epithelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000065
definition: An endo-epithelial cell of the respiratory tract.
created by: tmeehan
creation date: 2010-09-23T04:38:49Z
database_cross_reference: BTO:0004533
has_exact_synonym: airway epithelial cell
has OBO namespace: cell

Axiom
annotated source: respiratory epithelial cell
annotated property: subClassOf
annotated target: endo-epithelial cell
is inferred: true

Axiom
annotated source: respiratory epithelial cell
annotated property: definition
annotated target: An endo-epithelial cell of the respiratory tract.
database_cross_reference: GOC:tfm

somatic cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Class
    complement of: germ line cell
subclass of: native cell
definition: A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell).
created by: tmeehan
creation date: 2010-09-24T09:44:42Z
database_cross_reference: BTO:0001268
database_cross_reference: FMA:72300
database_cross_reference: WBbt:0008378
has OBO namespace: cell
id: CL:0002371
in_subset: upper level

Axiom
annotated source: somatic cell
annotated property: definition
annotated target: A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell).
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0721662544

myotube
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: has part
    some values from: GO_0030017
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001908
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002478
subclass of: multinucleate cell
subclass of: striated muscle cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0002478
definition: A transversely striated, synctial muscle cell, formed by the fusion of myoblasts.
created by: tmeehan
creation date: 2010-09-24T01:13:01Z
has alternative id: CL:0000369
has_exact_synonym: myotubule
has_exact_synonym: single cell sarcomere
has OBO namespace: cell
id: CL:0002372

Axiom
annotated source: myotube
annotated property: definition
annotated target: A transversely striated, synctial muscle cell, formed by the fusion of myoblasts.
database_cross_reference: GOC:dos
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0323052908
database_cross_reference: PMID:22274696

nucleated reticulocyte
type: Class
equivalent class: Class
  intersection of: reticulocyte
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002505
subclass of: reticulocyte
subclass of: nucleate cell
definition: A reticulocyte that retains the nucleus and other organelles. Found in birds, fish, amphibians and reptiles.
created by: tmeehan
creation date: 2010-10-15T09:24:05Z
has OBO namespace: cell

Axiom
annotated source: nucleated reticulocyte
annotated property: subClassOf
annotated target: reticulocyte
is inferred: true

Axiom
annotated source: nucleated reticulocyte
annotated property: definition
annotated target: A reticulocyte that retains the nucleus and other organelles. Found in birds, fish, amphibians and reptiles.
database_cross_reference: GOC:tfm
database_cross_reference: PMID:18182572
database_cross_reference: PMID:9011180
database_cross_reference: PMID:9046052

enucleated reticulocyte
type: Class
equivalent class: Class
  intersection of: reticulocyte
  intersection of: Restriction
    on property: has part
    some values from: GO_0005840
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001405
subclass of: anucleate cell
subclass of: reticulocyte
subclass of: Restriction
  on property: has part
  some values from: GO_0005840
definition: A reticulocyte lacking a nucleus and showing a basophilic reticulum under vital staining due to the presence of ribosomes.
created by: tmeehan
creation date: 2010-10-15T09:24:08Z
database_cross_reference: CALOHA:TS-0864
database_cross_reference: FMA:66785
has OBO namespace: cell

Axiom
annotated source: enucleated reticulocyte
annotated property: subClassOf
annotated target: reticulocyte
is inferred: true

Axiom
annotated source: enucleated reticulocyte
annotated property: definition
annotated target: A reticulocyte lacking a nucleus and showing a basophilic reticulum under vital staining due to the presence of ribosomes.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0-12203-052-4
database_cross_reference: ISBN:0721601464

cardiocyte
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0007100
subclass of: independent continuant
subclass of: animal cell
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0007100
definition: A cell located in the heart, including both muscle and non muscle cells.
created by: tmeehan
creation date: 2010-12-07T09:37:22Z
database_cross_reference: BTO:0001539
database_cross_reference: CALOHA:TS-0115
database_cross_reference: FMA:83808
database_cross_reference: FMA:84791
has_exact_synonym: heart cell
has OBO namespace: cell
id: CL:0002494
comment: From Onard of the FMA: Cardiac muscle cell or cardiac myocyte is a striated muscle cell. Cardiocyte on the other hand is any cell in the heart which includes cells other than muscle cells (e.g. endothelial cell of endocardium). Unless there is a consensus among anatomists that cardiocytes refer only to muscle cells, we will treat them as a general class of cells in the heart.

Axiom
annotated source: cardiocyte
annotated property: subClassOf
annotated target: somatic cell
is inferred: true

Axiom
annotated source: cardiocyte
annotated property: definition
annotated target: A cell located in the heart, including both muscle and non muscle cells.
database_cross_reference: GOC:tfm

adventitial cell
type: Class
equivalent class: Class
  intersection of: connective tissue cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0005742
subclass of: supporting cell
subclass of: connective tissue cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0005742
definition: A cell of the adventitial layer of ductal structures such as the uterer, defent duct, biliary duct, etc
created by: tmeehan
creation date: 2010-12-07T04:03:56Z
database_cross_reference: BTO:0002441
database_cross_reference: FMA:84639
has OBO namespace: cell
id: CL:0002503

Axiom
annotated source: adventitial cell
annotated property: definition
annotated target: A cell of the adventitial layer of ductal structures such as the uterer, defent duct, biliary duct, etc
database_cross_reference: GOC:tfm

subcutaneous fat cell
type: Class
equivalent class: Class
  intersection of: fat cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002190
subclass of: fat cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002190
definition: A fat cell that is part of subcutaneous adipose tissue.
created by: tmeehan
creation date: 2011-02-21T02:51:22Z
has_exact_synonym: subcutaneous adipocyte
has OBO namespace: cell

Axiom
annotated source: subcutaneous fat cell
annotated property: subClassOf
annotated target: fat cell
is inferred: true

Axiom
annotated source: subcutaneous fat cell
annotated property: definition
annotated target: A fat cell that is part of subcutaneous adipose tissue.
database_cross_reference: GOC:tfm

aortic smooth muscle cell
type: Class
equivalent class: Class
  intersection of: vascular associated smooth muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0004178
subclass of: blood vessel smooth muscle cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0004178
definition: A smooth muscle cell of the aorta.
created by: tmeehan
creation date: 2011-02-28T01:42:12Z
database_cross_reference: BTO:0004577
has OBO namespace: cell

Axiom
annotated source: aortic smooth muscle cell
annotated property: definition
annotated target: A smooth muscle cell of the aorta.
database_cross_reference: GOC:tfm

mesenchymal stem cell of the bone marrow
type: Class
equivalent class: Class
  intersection of: mesenchymal stem cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002371
subclass of: mesenchymal stem cell
subclass of: bone marrow cell
definition: A mesenchymal stem cell that is part of the bone marrow.
created by: tmeehan
creation date: 2011-02-28T01:47:47Z
has OBO namespace: cell

Axiom
annotated source: mesenchymal stem cell of the bone marrow
annotated property: definition
annotated target: A mesenchymal stem cell that is part of the bone marrow.
database_cross_reference: GOC:tfm

vein endothelial cell
type: Class
equivalent class: Class
  intersection of: blood vessel endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001638
subclass of: blood vessel endothelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001638
definition: An endothelial cell that is part of the vein.
created by: tmeehan
creation date: 2011-02-28T03:48:11Z
has alternative id: CL:1000393
database_cross_reference: FMA:62104
database_cross_reference: KUPO:0001099
has_exact_synonym: endothelial cell of vein
has_exact_synonym: venous endothelial cell
has OBO namespace: cell

Axiom
annotated source: vein endothelial cell
annotated property: subClassOf
annotated target: blood vessel endothelial cell
is inferred: true

Axiom
annotated source: vein endothelial cell
annotated property: definition
annotated target: An endothelial cell that is part of the vein.
database_cross_reference: GOC:tfm

embryonic blood vessel endothelial progenitor cell
type: Class
subclass of: mesodermal cell
subclass of: somatic cell
definition: An endothelial progenitor cell that participates in angiogenesis during development.
created by: tmeehan
creation date: 2011-02-28T04:20:39Z
has OBO namespace: cell
id: CL:0002546
comment: See CL:0002619.

Axiom
annotated source: embryonic blood vessel endothelial progenitor cell
annotated property: definition
annotated target: An endothelial progenitor cell that participates in angiogenesis during development.
database_cross_reference: GOC:tfm

fibroblast of the aortic adventitia
type: Class
equivalent class: Class
  intersection of: fibroblast of tunica adventitia of artery
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0004664
subclass of: fibroblast of tunica adventitia of artery
subclass of: Restriction
  on property: part of
  some values from: UBERON_0004664
definition: A fibroblast of the aortic adventitia.
created by: tmeehan
creation date: 2011-02-28T04:43:41Z
has OBO namespace: cell

Axiom
annotated source: fibroblast of the aortic adventitia
annotated property: subClassOf
annotated target: fibroblast of tunica adventitia of artery
is inferred: true

Axiom
annotated source: fibroblast of the aortic adventitia
annotated property: definition
annotated target: A fibroblast of the aortic adventitia.
database_cross_reference: GOC:tfm

fibroblast of cardiac tissue
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000948
subclass of: fibroblast
subclass of: cardiocyte
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000948
definition: A fibroblast that is part of the heart.
created by: tmeehan
creation date: 2011-02-28T04:57:44Z
has_exact_synonym: cardiac fibroblast
has OBO namespace: cell

Axiom
annotated source: fibroblast of cardiac tissue
annotated property: subClassOf
annotated target: fibroblast
is inferred: true

Axiom
annotated source: fibroblast of cardiac tissue
annotated property: subClassOf
annotated target: cardiocyte
is inferred: true

Axiom
annotated source: fibroblast of cardiac tissue
annotated property: definition
annotated target: A fibroblast that is part of the heart.
database_cross_reference: GOC:tfm

fibroblast of dermis
type: Class
equivalent class: Class
  intersection of: skin fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002067
subclass of: skin fibroblast
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002067
created by: tmeehan
creation date: 2011-02-28T05:05:33Z
has OBO namespace: cell

Axiom
annotated source: fibroblast of dermis
annotated property: subClassOf
annotated target: skin fibroblast
is inferred: true

fibroblast of lung
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002048
subclass of: fibroblast
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002048
definition: A fibroblast that is part of lung.
created by: tmeehan
creation date: 2011-02-28T05:11:03Z
database_cross_reference: BTO:0000764
database_cross_reference: CALOHA:TS-0575
has OBO namespace: cell

Axiom
annotated source: fibroblast of lung
annotated property: subClassOf
annotated target: fibroblast
is inferred: true

Axiom
annotated source: fibroblast of lung
annotated property: definition
annotated target: A fibroblast that is part of lung.
database_cross_reference: GOC:tfm

fibroblast of pulmonary artery
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002012
subclass of: fibroblast
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002012
definition: A fibroblast of pulmonary artery.
created by: tmeehan
creation date: 2011-02-28T05:22:27Z
has OBO namespace: cell

Axiom
annotated source: fibroblast of pulmonary artery
annotated property: subClassOf
annotated target: fibroblast
is inferred: true

Axiom
annotated source: fibroblast of pulmonary artery
annotated property: definition
annotated target: A fibroblast of pulmonary artery.
database_cross_reference: GOC:tfm

mesenchymal stem cell of adipose tissue
type: Class
equivalent class: Class
  intersection of: mesenchymal stem cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001013
subclass of: mesenchymal stem cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001013
definition: A mesenchymal stem cell of adipose tissue.
created by: tmeehan
creation date: 2011-03-01T09:57:17Z
has_exact_synonym: mesenchymal stem cell of adipose
has OBO namespace: cell

Axiom
annotated source: mesenchymal stem cell of adipose tissue
annotated property: definition
annotated target: A mesenchymal stem cell of adipose tissue.
database_cross_reference: GOC:tfm

Schwann cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000010
subclass of: glial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000010
definition: A glial cell that ensheathes axons of neuron in the peripheral nervous system and are necessary for their maintainance and function.
created by: tmeehan
creation date: 2011-03-02T01:19:27Z
database_cross_reference: BTO:0001220
database_cross_reference: CALOHA:TS-0898
has OBO namespace: cell

Axiom
annotated source: Schwann cell
annotated property: definition
annotated target: A glial cell that ensheathes axons of neuron in the peripheral nervous system and are necessary for their maintainance and function.
database_cross_reference: GOC:tfm

retinal blood vessel endothelial cell
type: Class
equivalent class: Class
  intersection of: blood vessel endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000966
subclass of: blood vessel endothelial cell
subclass of: retinal cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000966
definition: A blood vessel endothelial cell that is part of the retina.
created by: tmeehan
creation date: 2011-03-06T03:28:27Z
has OBO namespace: cell

Axiom
annotated source: retinal blood vessel endothelial cell
annotated property: subClassOf
annotated target: blood vessel endothelial cell
is inferred: true

Axiom
annotated source: retinal blood vessel endothelial cell
annotated property: definition
annotated target: A blood vessel endothelial cell that is part of the retina.
database_cross_reference: GOC:tfm

smooth muscle cell of the brain vasculature
type: Class
equivalent class: Class
  intersection of: vascular associated smooth muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000955
subclass of: vascular associated smooth muscle cell
subclass of: neural cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000955
definition: A vascular associated smooth muscle cell of the brain vasculature.
created by: tmeehan
creation date: 2011-03-06T05:01:20Z
has OBO namespace: cell

Axiom
annotated source: smooth muscle cell of the brain vasculature
annotated property: subClassOf
annotated target: vascular associated smooth muscle cell
is inferred: true

Axiom
annotated source: smooth muscle cell of the brain vasculature
annotated property: definition
annotated target: A vascular associated smooth muscle cell of the brain vasculature.
database_cross_reference: GOC:tfm

smooth muscle cell of the pulmonary artery
type: Class
equivalent class: Class
  intersection of: vascular associated smooth muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002012
subclass of: blood vessel smooth muscle cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002012
definition: A smooth muscle of the pulmonary artery.
created by: tmeehan
creation date: 2011-03-06T05:01:28Z
database_cross_reference: BTO:0003336
has OBO namespace: cell

Axiom
annotated source: smooth muscle cell of the pulmonary artery
annotated property: definition
annotated target: A smooth muscle of the pulmonary artery.
database_cross_reference: GOC:tfm

smooth muscle cell of the carotid artery
type: Class
equivalent class: Class
  intersection of: vascular associated smooth muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0005396
subclass of: blood vessel smooth muscle cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0005396
definition: Smooth muscle cell of the carotid artery.
created by: tmeehan
creation date: 2011-03-06T05:01:56Z
has OBO namespace: cell

Axiom
annotated source: smooth muscle cell of the carotid artery
annotated property: definition
annotated target: Smooth muscle cell of the carotid artery.
database_cross_reference: GOC:tfm

smooth muscle cell of the esophagus
type: Class
equivalent class: Class
  intersection of: smooth muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001043
subclass of: smooth muscle cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001043
definition: A smooth muscle cell of the esophagus.
created by: tmeehan
creation date: 2011-03-06T05:48:17Z
has OBO namespace: cell

Axiom
annotated source: smooth muscle cell of the esophagus
annotated property: subClassOf
annotated target: smooth muscle cell
is inferred: true

Axiom
annotated source: smooth muscle cell of the esophagus
annotated property: definition
annotated target: A smooth muscle cell of the esophagus.
database_cross_reference: GOC:tfm

raphe nuclei neuron
type: Class
equivalent class: Class
  intersection of: CNS neuron (sensu Vertebrata)
  intersection of: Restriction
    on property: has soma location
    some values from: UBERON_0004684
subclass of: CNS neuron (sensu Vertebrata)
subclass of: central nervous system neuron
subclass of: Restriction
  on property: has soma location
  some values from: UBERON_0004684
definition: A neuron of the raphe nuclei.
created by: tmeehan
creation date: 2011-03-06T07:42:06Z
has OBO namespace: cell

Axiom
annotated source: raphe nuclei neuron
annotated property: subClassOf
annotated target: CNS neuron (sensu Vertebrata)
is inferred: true

Axiom
annotated source: raphe nuclei neuron
annotated property: definition
annotated target: A neuron of the raphe nuclei.
database_cross_reference: GOC:tfm

neuron of the ventral spinal cord
type: Class
equivalent class: Class
  intersection of: CNS neuron (sensu Vertebrata)
  intersection of: Restriction
    on property: has soma location
    some values from: UBERON_0002257
subclass of: CNS neuron (sensu Vertebrata)
subclass of: central nervous system neuron
subclass of: Restriction
  on property: has soma location
  some values from: UBERON_0002257
definition: A neuron of the ventral spinal cord.
created by: tmeehan
creation date: 2011-03-06T07:46:03Z
has OBO namespace: cell

Axiom
annotated source: neuron of the ventral spinal cord
annotated property: subClassOf
annotated target: CNS neuron (sensu Vertebrata)
is inferred: true

Axiom
annotated source: neuron of the ventral spinal cord
annotated property: definition
annotated target: A neuron of the ventral spinal cord.
database_cross_reference: GOC:tfm

skin fibroblast
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002097
subclass of: fibroblast
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002097
definition: A fibroblast of skin.
created by: tmeehan
creation date: 2011-03-14T12:31:49Z
database_cross_reference: BTO:0001255
database_cross_reference: CALOHA:TS-0935
has OBO namespace: cell

Axiom
annotated source: skin fibroblast
annotated property: subClassOf
annotated target: fibroblast
is inferred: true

Axiom
annotated source: skin fibroblast
annotated property: definition
annotated target: A fibroblast of skin.
database_cross_reference: GOC:tfm

epithelial cell of lower respiratory tract
type: Class
equivalent class: Class
  intersection of: respiratory epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001558
subclass of: respiratory epithelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001558
created by: tmeehan
creation date: 2011-06-21T12:29:31Z
has OBO namespace: cell

Axiom
annotated source: epithelial cell of lower respiratory tract
annotated property: subClassOf
annotated target: respiratory epithelial cell
is inferred: true

glandular cell of esophagus
type: Class
equivalent class: Class
  intersection of: glandular epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001043
subclass of: glandular epithelial cell
subclass of: epithelial cell of esophagus
definition: A glandular epithelial cell of the esophagus.
created by: tmeehan
creation date: 2011-07-08T03:55:57Z
database_cross_reference: FMA:86548
has OBO namespace: cell

Axiom
annotated source: glandular cell of esophagus
annotated property: subClassOf
annotated target: glandular epithelial cell
is inferred: true

Axiom
annotated source: glandular cell of esophagus
annotated property: subClassOf
annotated target: epithelial cell of esophagus
is inferred: true

Axiom
annotated source: glandular cell of esophagus
annotated property: definition
annotated target: A glandular epithelial cell of the esophagus.
database_cross_reference: GOC:tfm

glandular cell of stomach
type: Class
equivalent class: Class
  intersection of: glandular epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000945
subclass of: glandular epithelial cell
subclass of: epithelial cell of stomach
definition: A glandular epithelial cell that is part of the stomach.
created by: tmeehan
creation date: 2011-07-11T01:20:35Z
database_cross_reference: CALOHA:TS-1284
database_cross_reference: FMA:86554
has OBO namespace: cell

Axiom
annotated source: glandular cell of stomach
annotated property: subClassOf
annotated target: glandular epithelial cell
is inferred: true

Axiom
annotated source: glandular cell of stomach
annotated property: definition
annotated target: A glandular epithelial cell that is part of the stomach.
database_cross_reference: GOC:tfm

myocardial endocrine cell of atrium
type: Class
equivalent class: Class
  intersection of: myocardial endocrine cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002081
subclass of: myocardial endocrine cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002081
definition: A myocardial endocrine cell that is part of the atrium.
created by: tmeehan
creation date: 2011-07-11T02:45:39Z
database_cross_reference: FMA:83389
has OBO namespace: cell

Axiom
annotated source: myocardial endocrine cell of atrium
annotated property: subClassOf
annotated target: myocardial endocrine cell
is inferred: true

Axiom
annotated source: myocardial endocrine cell of atrium
annotated property: definition
annotated target: A myocardial endocrine cell that is part of the atrium.
database_cross_reference: GOC:tfm

cardioblast
type: Class
subclass of: multi fate stem cell
definition: A stem cell that can give rise to multiple cell types (i.e. smooth muscle, endothelial) in the developing heart.
created by: tmeehan
creation date: 2011-07-11T03:15:38Z
has_exact_synonym: CPC
has_exact_synonym: cardiovascular progenitor cell
has OBO namespace: cell
comment: Discrepancy in develops from origins prevents me from making the assertion that cardioblasts give rise to all instances of cardiocytes as we state cardiac muscle cells develop from cardiac myoblast, which in turn develop from muscle stem cell.

Axiom
annotated source: cardioblast
annotated property: definition
annotated target: A stem cell that can give rise to multiple cell types (i.e. smooth muscle, endothelial) in the developing heart.
database_cross_reference: GOC:tfm
database_cross_reference: PMID:19745164

Axiom
annotated source: cardioblast
annotated property: has_exact_synonym
annotated target: CPC
database_cross_reference: PMID:19745164

Axiom
annotated source: cardioblast
annotated property: has_exact_synonym
annotated target: cardiovascular progenitor cell
database_cross_reference: PMID:17519333
database_cross_reference: PMID:19745164

retinal progenitor cell
type: Class
subclass of: anatomical entity
subclass of: multi fate stem cell
subclass of: Restriction
  on property: develops_from
  some values from: neurectodermal cell
definition: A multi-fate stem cell that can give rise to different retinal cell types including rod and cone cells.
created by: tmeehan
creation date: 2011-08-16T02:38:01Z
has OBO namespace: cell
id: CL:0002672

Axiom
annotated source: retinal progenitor cell
annotated property: definition
annotated target: A multi-fate stem cell that can give rise to different retinal cell types including rod and cone cells.
database_cross_reference: GOC:tfm
database_cross_reference: PMID:20959166
database_cross_reference: PMID:21148186

neural crest derived neuroblast
type: Class
subclass of: neuroblast (sensu Vertebrata)
subclass of: progenitor cell
subclass of: Restriction
  on property: develops_from
  some values from: migratory neural crest cell
definition: A neuroblast derived from a neural crest cell.
created by: tmeehan
creation date: 2011-08-22T09:24:15Z
has OBO namespace: cell
id: CL:0002676

Axiom
annotated source: neural crest derived neuroblast
annotated property: definition
annotated target: A neuroblast derived from a neural crest cell.
database_cross_reference: GOC:tfm
database_cross_reference: PMID:17407019

spinal cord interneuron
type: Class
equivalent class: Class
  intersection of: interneuron
  intersection of: Restriction
    on property: has soma location
    some values from: UBERON_0002240
subclass of: CNS interneuron
subclass of: Restriction
  on property: has soma location
  some values from: UBERON_0002240
definition: A CNS interneuron located in the spinal cord.
has OBO namespace: cell
id: CL:0005000
comment: Is_a interneuron, part_of UBERON:0002240.

Axiom
annotated source: spinal cord interneuron
annotated property: subClassOf
annotated target: CNS interneuron
is inferred: true

Axiom
annotated source: spinal cord interneuron
annotated property: definition
annotated target: A CNS interneuron located in the spinal cord.
database_cross_reference: CL:CVS

skeletogenic cell
type: Class
subclass of: native cell
definition: Cell that has the potential to form a skeletal cell type (e.g. cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized).
created by: haendel
creation date: 2012-06-15T02:51:27Z
has_exact_synonym: scleroblast
has OBO namespace: cell
id: CL:0007001
comment: Needs logical definition. Should be capable_of skeletal system morphogenesis? or skeletal tissue development? needs to be added to GO. NOTES:a cell type of the early embryo (see also: mesenchymal cells) that will give rise to mineralized connective tissue. Scleroblasts can differentiate into osteoblasts (bone-forming cells), chondroblasts (cartilage-forming cells), odontoblasts (dentin-forming cells), ameloblasts (enamel-forming cells). The mesenchymal cells developing into osteoblasts and chondroblasts are derived from the mesoderm. Those developing into odontoblasts are neural crest cells. Those developing into ameloblasts are derived from the ectoderm. (http://www.copewithcytokines.de/cope.cgi?key=scleroblasts)

Axiom
annotated source: skeletogenic cell
annotated property: definition
annotated target: Cell that has the potential to form a skeletal cell type (e.g. cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized).
database_cross_reference: GO_REF:0000034

Axiom
annotated source: skeletogenic cell
annotated property: has_exact_synonym
annotated target: scleroblast
database_cross_reference: GO_REF:0000034

premigratory neural crest cell
type: Class
subclass of: anatomical entity
subclass of: neural crest cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002342
subclass of: Restriction
  on property: develops_from
  some values from: neurectodermal cell
definition: Cell that is part of the neural crest region of the neuroepithelium, prior to migration. Note that not all premigratory neural crest cells may become migratory neural crest cells.
created by: haendel
creation date: 2012-06-27T08:27:35Z
has OBO namespace: cell
id: CL:0007004

Axiom
annotated source: premigratory neural crest cell
annotated property: definition
annotated target: Cell that is part of the neural crest region of the neuroepithelium, prior to migration. Note that not all premigratory neural crest cells may become migratory neural crest cells.
database_cross_reference: UBERONREF:0000002

prechondroblast
type: Class
subclass of: non-terminally differentiated cell
definition: Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells.
created by: haendel
creation date: 2012-06-27T10:44:01Z
has OBO namespace: cell
id: CL:0007009

Axiom
annotated source: prechondroblast
annotated property: definition
annotated target: Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells.
database_cross_reference: GO_REF:0000034

non-striated muscle cell
type: Class
subclass of: muscle cell
definition: Any muscle cell in which the fibers are not organised into sarcomeres.
id: CL:0008000

Axiom
annotated source: non-striated muscle cell
annotated property: definition
annotated target: Any muscle cell in which the fibers are not organised into sarcomeres.
database_cross_reference: GOC:DOS

hematopoietic precursor cell
type: Class
subclass of: hematopoietic cell
definition: Any hematopoietic cell that is a precursor of some other hematopoietic cell type.
id: CL:0008001

Axiom
annotated source: hematopoietic precursor cell
annotated property: definition
annotated target: Any hematopoietic cell that is a precursor of some other hematopoietic cell type.
database_cross_reference: GOC:dos

skeletal muscle fiber
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001134
  intersection of: Restriction
    on property: has part
    some values from: GO_0030017
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0001908
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002478
subclass of: cell of skeletal muscle
subclass of: myotube
subclass of: Restriction
  on property: develops_from
  some values from: skeletal muscle myoblast
definition: A transversely striated, synctial cell of skeletal muscle. It is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.
id: CL:0008002

Axiom
annotated source: skeletal muscle fiber
annotated property: definition
annotated target: A transversely striated, synctial cell of skeletal muscle. It is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.
database_cross_reference: GOC:tfm
database_cross_reference: ISBN:0323052908

visceral muscle cell
type: Class
subclass of: muscle cell
definition: A muscle cell that is part of some visceral muscle
id: CL:0008007

Axiom
annotated source: visceral muscle cell
annotated property: definition
annotated target: A muscle cell that is part of some visceral muscle
database_cross_reference: GOC:dos

striated visceral muscle cell
type: Class
equivalent class: Class
  intersection of: visceral muscle cell
  intersection of: Class
    intersection of: Restriction
      on property: has part
      some values from: GO_0030017
    intersection of: Restriction
      on property: bearer of
      some values from: PATO_0001410
subclass of: striated muscle cell
subclass of: visceral muscle cell
definition: A visceral muscle cell that is striated. Examples include the visceral muscle cells of arhtropods.

Axiom
annotated source: striated visceral muscle cell
annotated property: definition
annotated target: A visceral muscle cell that is striated. Examples include the visceral muscle cells of arhtropods.
database_cross_reference: GOC:dos

transversely striated visceral muscle cell
type: Class
equivalent class: Class
  intersection of: visceral muscle cell
  intersection of: Class
    intersection of: Restriction
      on property: has part
      some values from: GO_0030017
    intersection of: Restriction
      on property: bearer of
      some values from: PATO_0002478
subclass of: striated visceral muscle cell
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0002478
definition: A visceral muscle that is transversely striated. Examples include the visceral muscle cells of arthropods.

Axiom
annotated source: transversely striated visceral muscle cell
annotated property: definition
annotated target: A visceral muscle that is transversely striated. Examples include the visceral muscle cells of arthropods.
database_cross_reference: GOC:dos

adult skeletal muscle myoblast
type: Class
equivalent class: Class
  intersection of: myoblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001134
  intersection of: Restriction
    on property: develops_into
    some values from: skeletal muscle fiber
subclass of: cell of skeletal muscle
subclass of: skeletal muscle myoblast
definition: A skeletal muscle myoblast that is part of a skeletal mucle. These cells are formed following acivation and division of skeletal muscle satellite cells. They form a transient population that is lost when they fuse to form skeletal muscle fibers.
has broad synonym: myogenic precursor cell
has OBO namespace: cell
comment: The vast majority of these cells develop from skeletal muscle satellite cells, although there are some reports of other origins.

Axiom
annotated source: adult skeletal muscle myoblast
annotated property: definition
annotated target: A skeletal muscle myoblast that is part of a skeletal mucle. These cells are formed following acivation and division of skeletal muscle satellite cells. They form a transient population that is lost when they fuse to form skeletal muscle fibers.
database_cross_reference: PMID:23303905

Axiom
annotated source: adult skeletal muscle myoblast
annotated property: hasBroadSynonym
annotated target: myogenic precursor cell
database_cross_reference: PMID:23303905

mesenchymal cell
type: Class
subclass of: motile cell
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0003104
subclass of: Restriction
  on property: capable of
  some values from: GO_0016477
definition: A non-polarised cell precursor cell that is part of some mesenchyme, is associated with the cell matrix but is not connected to other cells and is capable of migration.
has_exact_synonym: mesenchyme cell
id: CL:0008019

endocardial cushion cell
type: Class
equivalent class: Class
  intersection of: cardiac mesenchymal cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002062
subclass of: cardiac mesenchymal cell
subclass of: cardiocyte
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002062
definition: A mesenchymal cell of the endocardial cushion. These cells develop via an epithelial to mesenchymal transition when endocardial cells break cell-to-cell contacts and migrate into the cardiac jelly. Cells from this population form the heart septa and valves.

Axiom
annotated source: endocardial cushion cell
annotated property: definition
annotated target: A mesenchymal cell of the endocardial cushion. These cells develop via an epithelial to mesenchymal transition when endocardial cells break cell-to-cell contacts and migrate into the cardiac jelly. Cells from this population form the heart septa and valves.
database_cross_reference: PMID:18816864

visual system neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: capable of part of
    some values from: GO_0007601
subclass of: neuron
subclass of: Restriction
  on property: capable of part of
  some values from: GO_0007601
created by: dos
creation date: 2017-07-09T19:12:36Z

mural cell
type: Class
subclass of: somatic cell
definition: Mural cells are pericytes and the vascular smooth muscle cells (vSMCs) of the microcirculation.
created by: dos
creation date: 2020-02-29T17:33:55Z
in_subset: added for HCA

Axiom
annotated source: mural cell
annotated property: definition
annotated target: Mural cells are pericytes and the vascular smooth muscle cells (vSMCs) of the microcirculation.
database_cross_reference: Wiki:Mural_cell&oldid=930603194

microcirculation associated smooth muscle cell
type: Class
equivalent class: Class
  intersection of: vascular associated smooth muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0010523
subclass of: vascular associated smooth muscle cell
subclass of: mural cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0010523
created by: dos
creation date: 2020-02-29T17:37:00Z

sensory neuron of spinal nerve
type: Class
equivalent class: Class
  intersection of: sensory neuron
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001780
subclass of: sensory neuron
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001780
definition: A sensory neuron of the spinal nerve that senses body position and sends information about how much the muscle is stretched to the spinal cord.
has_exact_synonym: spinal sensory neuron

Axiom
annotated source: sensory neuron of spinal nerve
annotated property: subClassOf
annotated target: sensory neuron
is inferred: true

Axiom
annotated source: sensory neuron of spinal nerve
annotated property: definition
annotated target: A sensory neuron of the spinal nerve that senses body position and sends information about how much the muscle is stretched to the spinal cord.
database_cross_reference: GOC:nv
database_cross_reference: GOC:pr

compound eye retinal cell
type: Class
equivalent class: Class
  intersection of: cell
  intersection of: Restriction
    on property: part of
    some values from: Class
      intersection of: UBERON_0005388
      intersection of: Restriction
        on property: part of
        some values from: UBERON_0000018
subclass of: anatomical entity
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: Class
    intersection of: UBERON_0005388
    intersection of: Restriction
      on property: part of
      some values from: UBERON_0000018
definition: Any cell in the compound eye, a light sensing organ composed of ommatidia.
database_cross_reference: GOC:pr
database_cross_reference: PMID:12021768

retinal cell
type: Class
equivalent class: Class
  intersection of: neural cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0005388
subclass of: neural cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0005388
definition: Any cell in the retina, the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
database_cross_reference: PMID:10702418
has OBO namespace: cell

Axiom
annotated source: retinal cell
annotated property: definition
annotated target: Any cell in the retina, the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
database_cross_reference: GOC:pr

stromal cell of bone marrow
type: Class
equivalent class: Class
  intersection of: stromal cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002371
subclass of: stromal cell
subclass of: bone marrow cell
definition: A stromal cell that is part_of a bone marrow.
created by: GOC:cjm
has_exact_synonym: bone marrow stromal cell

mononuclear cell of bone marrow
type: Class
equivalent class: Class
  intersection of: mononuclear cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002371
subclass of: mononuclear cell
subclass of: bone marrow hematopoietic cell
definition: A mononuclear cell that is part_of a bone marrow.
created by: GOC:cjm
has_exact_synonym: bone marrow mononuclear cell

cardiac blood vessel endothelial cell
type: Class
equivalent class: Class
  intersection of: blood vessel endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000948
subclass of: blood vessel endothelial cell
subclass of: cardiac endothelial cell

His-Purkinje system cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0004146
subclass of: anatomical entity
subclass of: native cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0004146

cardiac endothelial cell
type: Class
equivalent class: Class
  intersection of: endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000948
subclass of: endothelial cell
subclass of: cardiocyte
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000948

camera-type eye photoreceptor cell
type: Class
equivalent class: Class
  intersection of: photoreceptor cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000019
subclass of: eye photoreceptor cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000019
has_exact_synonym: camera type eye photoreceptor cell
id: CL:0010009

zygote
type: Class
subclass of: native cell
definition: A zygote in a plant or an animal.
id: CL:0010017

cardiac glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000948
subclass of: glial cell
subclass of: cardiocyte
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000948

cardiac myoblast
type: Class
equivalent class: Class
  intersection of: myoblast
  intersection of: Restriction
    on property: develops_into
    some values from: cardiac muscle cell
subclass of: myoblast
subclass of: Restriction
  on property: develops_into
  some values from: cardiac muscle cell
has OBO namespace: cell
id: CL:0010021

cardiac neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000948
subclass of: neuron
subclass of: cardiocyte
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000948

spinal cord motor neuron
type: Class
equivalent class: Class
  intersection of: motor neuron
  intersection of: Restriction
    on property: has soma location
    some values from: UBERON_0002240
subclass of: motor neuron
subclass of: central nervous system neuron
subclass of: Restriction
  on property: has soma location
  some values from: UBERON_0002240
definition: A motor neuron that passes from the spinal cord toward or to a muscle and conducts an impulse that causes movement.

Axiom
annotated source: spinal cord motor neuron
annotated property: subClassOf
annotated target: motor neuron
is inferred: true

Axiom
annotated source: spinal cord motor neuron
annotated property: definition
annotated target: A motor neuron that passes from the spinal cord toward or to a muscle and conducts an impulse that causes movement.
database_cross_reference: GOC:nv

paraxial cell
type: Class
equivalent class: Class
  intersection of: mesodermal cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0003059
subclass of: mesodermal cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0003059
definition: A cell in the area of mesoderm in the neurulating embryo that flanks and forms simultaneously with the neural tube. The cells of this region give rise to somites.
has_exact_synonym: paraxial mesoderm cell
has_exact_synonym: somitic mesoderm cell
has_narrow_synonym: presomitic mesoderm cell

Axiom
annotated source: paraxial cell
annotated property: definition
annotated target: A cell in the area of mesoderm in the neurulating embryo that flanks and forms simultaneously with the neural tube. The cells of this region give rise to somites.
database_cross_reference: GOC:NV
database_cross_reference: PMID:11687492

neural crest cell
type: Class
subclass of: multi fate stem cell
subclass of: embryonic cell (metazoa)
definition: A cell of the neural crest. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesynchymal transition and delamination to form migratory neural crest cells.
has OBO namespace: cell
id: CL:0011012

Axiom
annotated source: neural crest cell
annotated property: definition
annotated target: A cell of the neural crest. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesynchymal transition and delamination to form migratory neural crest cells.
database_cross_reference: https://orcid.org/0000-0001-5208-3432
database_cross_reference: https://orcid.org/0000-0002-9900-7880

mesothelial cell of epicardium
type: Class
equivalent class: Class
  intersection of: mesothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002348
subclass of: mesothelial cell
subclass of: cardiocyte
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002348
definition: A mesothelial cell that is part of the epicardium.
created by: http://orcid.org/0000-0001-5208-3432

fibroblast of upper back skin
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0009015
subclass of: fibroblast of skin of back
subclass of: Restriction
  on property: part of
  some values from: UBERON_0009015
definition: A fibroblast that is part of upper back skin.
created by: http://orcid.org/0000-0001-5208-3432

fibroblast of skin of back
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001068
subclass of: skin fibroblast
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001068
definition: A fibroblast that is part of skin of back.
created by: http://orcid.org/0000-0001-5208-3432

progenitor cell
type: Class
equivalent class: Class
  intersection of: precursor cell
  intersection of: Restriction
    on property: develops_from
    some values from: stem cell
subclass of: anatomical entity
subclass of: precursor cell
subclass of: Restriction
  on property: develops_from
  some values from: stem cell
definition: A precursor cell that has a tendency to differentiate into a specific type of cell. They are descendants of stem cells, only they are more constrained in their differentiation potential or capacity for self-renewal, and are often more limited in both senses.
created by: http://orcid.org/0000-0001-5208-3432
id: CL:0011026

Axiom
annotated source: progenitor cell
annotated property: definition
annotated target: A precursor cell that has a tendency to differentiate into a specific type of cell. They are descendants of stem cells, only they are more constrained in their differentiation potential or capacity for self-renewal, and are often more limited in both senses.
database_cross_reference: ISBN:978-1-62808-994-3
database_cross_reference: https://doi.org/10.1016/B978-0-12-409503-8.00002-0

skeletal muscle fibroblast
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001134
subclass of: cell of skeletal muscle
subclass of: muscle fibroblast
definition: Any fibroblast that is part of skeletal muscle tissue.
created by: http://orcid.org/0000-0001-5208-3432
has_exact_synonym: skeleton muscle fibroblast

Axiom
annotated source: skeletal muscle fibroblast
annotated property: definition
annotated target: Any fibroblast that is part of skeletal muscle tissue.
database_cross_reference: PMID:28369879
database_cross_reference: https://orcid.org/0000-0001-6164-0667

dermal microvascular endothelial cell
type: Class
equivalent class: Class
  intersection of: microvascular endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002067
subclass of: microvascular endothelial cell
subclass of: dermis blood vessel endothelial cell
definition: Any microvascular endothelial cell that is part of the dermis.
created by: http://orcid.org/0000-0001-5208-3432
has_exact_synonym: DMEC cell
has_exact_synonym: dermal microvascular endothelium cell

Axiom
annotated source: dermal microvascular endothelial cell
annotated property: definition
annotated target: Any microvascular endothelial cell that is part of the dermis.
database_cross_reference: BTO:0004574
database_cross_reference: CL:patterns/cellPartOfAnatomicalEntity

precursor cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: capable of
    some values from: GO_0030154
subclass of: material entity
subclass of: native cell
subclass of: Restriction
  on property: capable of
  some values from: GO_0030154
definition: A cell that, by division or terminal differentiation, can give rise to other cell types.
id: CL:0011115
comment: Work is needed on GO 'cell differentiation' before it is clear whether the equivalent class definition 'native cell' that capable_of some 'cell differentiation' works. Also, may want to consider merging this with non-terminally differentiated cell.

Axiom
annotated source: precursor cell
annotated property: definition
annotated target: A cell that, by division or terminal differentiation, can give rise to other cell types.
database_cross_reference: GOC:dos

acidophilic cytoplasm
type: Class
equivalent class: Class
  intersection of: GO_0005737
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002418
subclass of: GO_0005737
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0002418
definition: Cytoplasm that exhibits a characteristic staining and color, red or pink, with Eosin stain.
created by: tmeehan
creation date: 2009-12-22T04:23:25Z
has_narrow_synonym: eosinophilic
has OBO namespace: cell

Axiom
annotated source: acidophilic cytoplasm
annotated property: definition
annotated target: Cytoplasm that exhibits a characteristic staining and color, red or pink, with Eosin stain.
database_cross_reference: GOC:add

basophilic cytoplasm
type: Class
equivalent class: Class
  intersection of: GO_0005737
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002094
subclass of: GO_0005737
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0002094
definition: Cytoplasm that exhibits molecular interaction for basic dyes under specific pH conditions.
created by: tmeehan
creation date: 2009-12-22T04:24:54Z
has OBO namespace: cell

Axiom
annotated source: basophilic cytoplasm
annotated property: definition
annotated target: Cytoplasm that exhibits molecular interaction for basic dyes under specific pH conditions.
database_cross_reference: GOC:tfm

polychromatophilic cytoplasm
type: Class
equivalent class: Class
  intersection of: GO_0005737
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0070047
subclass of: GO_0005737
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0070047
definition: Cytoplasm that exhibits affinity for both basic and acid stains under specific pH conditions.
created by: tmeehan
creation date: 2009-12-28T04:25:23Z
has OBO namespace: cell

Axiom
annotated source: polychromatophilic cytoplasm
annotated property: definition
annotated target: Cytoplasm that exhibits affinity for both basic and acid stains under specific pH conditions.
database_cross_reference: GOC:tfm

increased nucleus size
type: Class
equivalent class: Class
  intersection of: GO_0005634
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0000586
subclass of: GO_0005634
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0000586
definition: A nucleus size quality which is relatively high compared to the amount of cytoplasm present in the same cell.
created by: tmeehan
creation date: 2009-12-23T10:53:24Z
has OBO namespace: cell

Axiom
annotated source: increased nucleus size
annotated property: definition
annotated target: A nucleus size quality which is relatively high compared to the amount of cytoplasm present in the same cell.
database_cross_reference: GOC:tfm

blood vessel smooth muscle cell
type: Class
equivalent class: Class
  intersection of: smooth muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001981
subclass of: vascular associated smooth muscle cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001981
definition: A smooth muscle cell that is part of any blood vessel.
creator: 0000-0003-2034-601X
date: 2020-07-21T12:42:48Z
has_exact_synonym: smooth muscle cell of blood vessel

Axiom
annotated source: blood vessel smooth muscle cell
annotated property: definition
annotated target: A smooth muscle cell that is part of any blood vessel.
database_cross_reference: PMID:9108778

stomach neuroendocrine cell
type: Class
equivalent class: Class
  intersection of: neuroendocrine cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000945
subclass of: neuroendocrine cell
subclass of: epithelial cell of stomach

lung neuroendocrine cell
type: Class
equivalent class: Class
  intersection of: neuroendocrine cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002048
subclass of: epithelial cell of lung
subclass of: neuroendocrine cell
subclass of: lung secretory cell

lung ciliated cell
type: Class
equivalent class: Class
  intersection of: ciliated cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002048
subclass of: anatomical entity
subclass of: ciliated cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002048

lung secretory cell
type: Class
equivalent class: Class
  intersection of: secretory cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002048
subclass of: anatomical entity
subclass of: secretory cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002048

fibroblast of areolar connective tissue
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0006815
subclass of: fibroblast
subclass of: Restriction
  on property: part of
  some values from: UBERON_0006815
definition: A fibroblast that is part of the areolar connective tissue.
database_cross_reference: FMA:261279
has OBO namespace: cell
id: CL:1000303

Axiom
annotated source: fibroblast of areolar connective tissue
annotated property: subClassOf
annotated target: fibroblast
is inferred: true

Axiom
annotated source: fibroblast of areolar connective tissue
annotated property: definition
annotated target: A fibroblast that is part of the areolar connective tissue.
database_cross_reference: GOC:tfm

fibroblast of tunica adventitia of artery
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0005734
subclass of: fibroblast
subclass of: adventitial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0005734
definition: A fibroblast that is part of the tunica adventitia of artery.
database_cross_reference: FMA:261285
has OBO namespace: cell
id: CL:1000306

Axiom
annotated source: fibroblast of tunica adventitia of artery
annotated property: subClassOf
annotated target: fibroblast
is inferred: true

Axiom
annotated source: fibroblast of tunica adventitia of artery
annotated property: definition
annotated target: A fibroblast that is part of the tunica adventitia of artery.
database_cross_reference: GOC:tfm

fibroblast of dense regular elastic tissue
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0007846
subclass of: fibroblast
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002521
subclass of: Restriction
  on property: part of
  some values from: UBERON_0007846
definition: A fibroblast that is part of the dense regular elastic tissue.
database_cross_reference: FMA:261287
has OBO namespace: cell

Axiom
annotated source: fibroblast of dense regular elastic tissue
annotated property: definition
annotated target: A fibroblast that is part of the dense regular elastic tissue.
database_cross_reference: GOC:tfm

epicardial adipocyte
type: Class
subclass of: fat cell
subclass of: cardiocyte
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002348
definition: A fat cell that is part of the epicardial fat.
database_cross_reference: FMA:261293
has_exact_synonym: adipocyte of epicardial fat
has_exact_synonym: epicardial fat cell
has OBO namespace: cell
id: CL:1000309

Axiom
annotated source: epicardial adipocyte
annotated property: definition
annotated target: A fat cell that is part of the epicardial fat.
database_cross_reference: GOC:tfm

Axiom
annotated source: epicardial adipocyte
annotated property: has_exact_synonym
annotated target: adipocyte of epicardial fat
database_cross_reference: FMA:261293

Axiom
annotated source: epicardial adipocyte
annotated property: has_exact_synonym
annotated target: epicardial fat cell
database_cross_reference: FMA:261293

adipocyte of epicardial fat of right ventricle
type: Class
equivalent class: Class
  intersection of: epicardial adipocyte
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002080
subclass of: epicardial adipocyte
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002080
definition: A fat cell that is part of the epicardial fat of right ventricle.
database_cross_reference: FMA:261297
has_exact_synonym: epicardial adipocyte of right ventricle
has_exact_synonym: epicardial fat cell of right ventricle
has OBO namespace: cell

Axiom
annotated source: adipocyte of epicardial fat of right ventricle
annotated property: definition
annotated target: A fat cell that is part of the epicardial fat of right ventricle.
database_cross_reference: GOC:tfm

Axiom
annotated source: adipocyte of epicardial fat of right ventricle
annotated property: has_exact_synonym
annotated target: epicardial adipocyte of right ventricle
database_cross_reference: FMA:261297

Axiom
annotated source: adipocyte of epicardial fat of right ventricle
annotated property: has_exact_synonym
annotated target: epicardial fat cell of right ventricle
database_cross_reference: FMA:261297

adipocyte of epicardial fat of left ventricle
type: Class
equivalent class: Class
  intersection of: epicardial adipocyte
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002084
subclass of: epicardial adipocyte
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002084
definition: A fat cell that is part of the epicardial fat of left ventricle.
database_cross_reference: FMA:261300
has_exact_synonym: epicardial adipocyte of left ventricle
has_exact_synonym: epicardial fat cell of left ventricle
has OBO namespace: cell

Axiom
annotated source: adipocyte of epicardial fat of left ventricle
annotated property: definition
annotated target: A fat cell that is part of the epicardial fat of left ventricle.
database_cross_reference: GOC:tfm

Axiom
annotated source: adipocyte of epicardial fat of left ventricle
annotated property: has_exact_synonym
annotated target: epicardial adipocyte of left ventricle
database_cross_reference: FMA:261300

Axiom
annotated source: adipocyte of epicardial fat of left ventricle
annotated property: has_exact_synonym
annotated target: epicardial fat cell of left ventricle
database_cross_reference: FMA:261300

transitional myocyte of interatrial septum
type: Class
equivalent class: Class
  intersection of: transitional myocyte
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002085
subclass of: transitional myocyte
subclass of: cardiac septum cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002085
definition: A transitional myocyte that is part of the interatrial septum.
database_cross_reference: FMA:263152
has OBO namespace: cell

Axiom
annotated source: transitional myocyte of interatrial septum
annotated property: subClassOf
annotated target: transitional myocyte
is inferred: true

Axiom
annotated source: transitional myocyte of interatrial septum
annotated property: definition
annotated target: A transitional myocyte that is part of the interatrial septum.
database_cross_reference: GOC:tfm

transitional myocyte of interventricular septum
type: Class
equivalent class: Class
  intersection of: transitional myocyte
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002094
subclass of: transitional myocyte
subclass of: cardiac septum cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002094
definition: A transitional myocyte that is part of the interventricular septum.
database_cross_reference: FMA:263154
has OBO namespace: cell

Axiom
annotated source: transitional myocyte of interventricular septum
annotated property: subClassOf
annotated target: transitional myocyte
is inferred: true

Axiom
annotated source: transitional myocyte of interventricular septum
annotated property: definition
annotated target: A transitional myocyte that is part of the interventricular septum.
database_cross_reference: GOC:tfm

Purkinje myocyte of interventricular septum
type: Class
equivalent class: Class
  intersection of: Purkinje myocyte
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002094
subclass of: Purkinje myocyte
subclass of: cardiac septum cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002094
definition: A Purkinje myocyte that is part of the interventricular septum.
database_cross_reference: FMA:263182
has OBO namespace: cell

Axiom
annotated source: Purkinje myocyte of interventricular septum
annotated property: subClassOf
annotated target: Purkinje myocyte
is inferred: true

Axiom
annotated source: Purkinje myocyte of interventricular septum
annotated property: definition
annotated target: A Purkinje myocyte that is part of the interventricular septum.
database_cross_reference: GOC:tfm

myocyte of sinoatrial node
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002351
subclass of: nodal myocyte
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002351
definition: A muscle cell that is part of the sinoatrial node.
database_cross_reference: FMA:67102
has_exact_synonym: SA nodal myocyte
has_exact_synonym: SA node cardiac muscle cell
has_exact_synonym: myocyte of sinoatrial node
has_exact_synonym: sinoatrial node cell
has_exact_synonym: sinoatrial node myocyte
has_exact_synonym: sinuatrial node myocyte
has OBO namespace: cell
id: CL:1000409

Axiom
annotated source: myocyte of sinoatrial node
annotated property: definition
annotated target: A muscle cell that is part of the sinoatrial node.
database_cross_reference: FMA:67102
database_cross_reference: GOC:tfm

Axiom
annotated source: myocyte of sinoatrial node
annotated property: has_exact_synonym
annotated target: SA nodal myocyte
database_cross_reference: FMA:67102

Axiom
annotated source: myocyte of sinoatrial node
annotated property: has_exact_synonym
annotated target: SA node cardiac muscle cell
database_cross_reference: GOC:pr

Axiom
annotated source: myocyte of sinoatrial node
annotated property: has_exact_synonym
annotated target: myocyte of sinoatrial node
database_cross_reference: FMA:67102

Axiom
annotated source: myocyte of sinoatrial node
annotated property: has_exact_synonym
annotated target: sinoatrial node cell
database_cross_reference: GOC:pr

Axiom
annotated source: myocyte of sinoatrial node
annotated property: has_exact_synonym
annotated target: sinuatrial node myocyte
database_cross_reference: FMA:67102

myocyte of atrioventricular node
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002352
subclass of: nodal myocyte
subclass of: cardiac septum cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002352
definition: A muscle cell that is part of the atrioventricular node.
database_cross_reference: FMA:67106
has_exact_synonym: AV nodal myocyte
has_exact_synonym: AV node cardiac muscle cell
has_exact_synonym: AV node cell
has_exact_synonym: atrioventricular node cell
has_exact_synonym: atrioventricular node myocyte
has OBO namespace: cell
id: CL:1000410

Axiom
annotated source: myocyte of atrioventricular node
annotated property: definition
annotated target: A muscle cell that is part of the atrioventricular node.
database_cross_reference: FMA:67106
database_cross_reference: GOC:tfm

Axiom
annotated source: myocyte of atrioventricular node
annotated property: has_exact_synonym
annotated target: AV nodal myocyte
database_cross_reference: FMA:67106

Axiom
annotated source: myocyte of atrioventricular node
annotated property: has_exact_synonym
annotated target: AV node cardiac muscle cell
database_cross_reference: GOC:pr

Axiom
annotated source: myocyte of atrioventricular node
annotated property: has_exact_synonym
annotated target: AV node cell
database_cross_reference: GOC:pr

Axiom
annotated source: myocyte of atrioventricular node
annotated property: has_exact_synonym
annotated target: atrioventricular node cell
database_cross_reference: GOC:pr

Axiom
annotated source: myocyte of atrioventricular node
annotated property: has_exact_synonym
annotated target: atrioventricular node myocyte
database_cross_reference: FMA:67106

endothelial cell of arteriole
type: Class
equivalent class: Class
  intersection of: endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001980
subclass of: blood vessel endothelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001980
definition: An endothelial cell that is part of the arteriole.
database_cross_reference: FMA:67760
database_cross_reference: KUPO:0001097
has OBO namespace: cell

Axiom
annotated source: endothelial cell of arteriole
annotated property: subClassOf
annotated target: blood vessel endothelial cell
is inferred: true

Axiom
annotated source: endothelial cell of arteriole
annotated property: definition
annotated target: An endothelial cell that is part of the arteriole.
database_cross_reference: GOC:tfm

endothelial cell of artery
type: Class
equivalent class: Class
  intersection of: endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001637
subclass of: blood vessel endothelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001917
definition: A blood vessel endothelial cell that is part of an arterial endothelium.
has alternative id: CL:0002542
database_cross_reference: BTO:0004758
database_cross_reference: FMA:67761
database_cross_reference: KUPO:0001095
has_exact_synonym: arterial endothelial cell
has OBO namespace: cell

Axiom
annotated source: endothelial cell of artery
annotated property: definition
annotated target: A blood vessel endothelial cell that is part of an arterial endothelium.
database_cross_reference: GOC:tfm

endothelial cell of venule
type: Class
equivalent class: Class
  intersection of: endothelial cell of vascular tree
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001979
subclass of: endothelial cell of vascular tree
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001979
definition: An endothelial cell that is part of the venule.
database_cross_reference: FMA:67762
has OBO namespace: cell

Axiom
annotated source: endothelial cell of venule
annotated property: subClassOf
annotated target: endothelial cell of vascular tree
is inferred: true

Axiom
annotated source: endothelial cell of venule
annotated property: definition
annotated target: An endothelial cell that is part of the venule.
database_cross_reference: GOC:tfm

stem cell of epidermis
type: Class
equivalent class: Class
  intersection of: somatic stem cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001003
subclass of: anatomical entity
subclass of: somatic stem cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001003
definition: A somatic stem cell that is part of the epidermis.
database_cross_reference: FMA:70541
has_exact_synonym: epidermal stem cell
has OBO namespace: cell

Axiom
annotated source: stem cell of epidermis
annotated property: subClassOf
annotated target: somatic stem cell
is inferred: true

Axiom
annotated source: stem cell of epidermis
annotated property: definition
annotated target: A somatic stem cell that is part of the epidermis.
database_cross_reference: GOC:tfm

Axiom
annotated source: stem cell of epidermis
annotated property: has_exact_synonym
annotated target: epidermal stem cell
database_cross_reference: FMA:70541

ciliary muscle cell
type: Class
equivalent class: Class
  intersection of: smooth muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001775
subclass of: smooth muscle cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001775
definition: A smooth muscle cell that is part of the ciliary body.
database_cross_reference: FMA:70610
has_exact_synonym: smooth muscle cell of ciliary body
has OBO namespace: cell

Axiom
annotated source: ciliary muscle cell
annotated property: subClassOf
annotated target: smooth muscle cell
is inferred: true

Axiom
annotated source: ciliary muscle cell
annotated property: definition
annotated target: A smooth muscle cell that is part of the ciliary body.
database_cross_reference: GOC:tfm

Axiom
annotated source: ciliary muscle cell
annotated property: has_exact_synonym
annotated target: smooth muscle cell of ciliary body
database_cross_reference: FMA:70610

mesothelial cell of anterior chamber of eye
type: Class
equivalent class: Class
  intersection of: mesothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001766
subclass of: mesothelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001766
definition: A mesothelial cell that is part of the anterior chamber of eyeball.
database_cross_reference: FMA:70615
has OBO namespace: cell

Axiom
annotated source: mesothelial cell of anterior chamber of eye
annotated property: subClassOf
annotated target: mesothelial cell
is inferred: true

Axiom
annotated source: mesothelial cell of anterior chamber of eye
annotated property: definition
annotated target: A mesothelial cell that is part of the anterior chamber of eyeball.
database_cross_reference: GOC:tfm

mesothelial cell of parietal peritoneum
type: Class
equivalent class: Class
  intersection of: mesothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001366
subclass of: mesothelial cell of peritoneum
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001366
definition: A mesothelial cell that is part of the parietal peritoneum.
database_cross_reference: FMA:72142
has OBO namespace: cell

Axiom
annotated source: mesothelial cell of parietal peritoneum
annotated property: definition
annotated target: A mesothelial cell that is part of the parietal peritoneum.
database_cross_reference: GOC:tfm

mesothelial cell of visceral peritoneum
type: Class
equivalent class: Class
  intersection of: mesothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001178
subclass of: mesothelial cell of peritoneum
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001178
definition: A mesothelial cell that is part of the visceral peritoneum.
database_cross_reference: FMA:72143
has OBO namespace: cell

Axiom
annotated source: mesothelial cell of visceral peritoneum
annotated property: definition
annotated target: A mesothelial cell that is part of the visceral peritoneum.
database_cross_reference: GOC:tfm

transitional myocyte of sinoatrial node
type: Class
equivalent class: Class
  intersection of: transitional myocyte
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002351
subclass of: transitional myocyte
subclass of: myocyte of sinoatrial node
definition: A transitional myocyte that is part of the sinoatrial node.
database_cross_reference: FMA:83384
has_exact_synonym: transitinal myocyte of sinuatrial node
has OBO namespace: cell

Axiom
annotated source: transitional myocyte of sinoatrial node
annotated property: subClassOf
annotated target: transitional myocyte
is inferred: true

Axiom
annotated source: transitional myocyte of sinoatrial node
annotated property: definition
annotated target: A transitional myocyte that is part of the sinoatrial node.
database_cross_reference: GOC:tfm

Purkinje myocyte of atrioventricular node
type: Class
equivalent class: Class
  intersection of: Purkinje myocyte
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002352
subclass of: Purkinje myocyte
subclass of: myocyte of atrioventricular node
definition: A Purkinje myocyte that is part of the atrioventricular node.
database_cross_reference: FMA:83386
has OBO namespace: cell

Axiom
annotated source: Purkinje myocyte of atrioventricular node
annotated property: subClassOf
annotated target: Purkinje myocyte
is inferred: true

Axiom
annotated source: Purkinje myocyte of atrioventricular node
annotated property: definition
annotated target: A Purkinje myocyte that is part of the atrioventricular node.
database_cross_reference: GOC:tfm

myocardial endocrine cell of interventricular septum
type: Class
equivalent class: Class
  intersection of: myocardial endocrine cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002094
subclass of: myocardial endocrine cell
subclass of: cardiac septum cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002094
definition: A myocardial endocrine cell that is part of the interventricular septum.
database_cross_reference: FMA:83390
has OBO namespace: cell

Axiom
annotated source: myocardial endocrine cell of interventricular septum
annotated property: subClassOf
annotated target: myocardial endocrine cell
is inferred: true

Axiom
annotated source: myocardial endocrine cell of interventricular septum
annotated property: definition
annotated target: A myocardial endocrine cell that is part of the interventricular septum.
database_cross_reference: GOC:tfm

mesothelial cell of peritoneum
type: Class
equivalent class: Class
  intersection of: mesothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002358
subclass of: mesothelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002358
definition: A mesothelial cell that is part of the peritoneum.
database_cross_reference: FMA:86736
has_exact_synonym: peritoneal mesothelial cell
has OBO namespace: cell

Axiom
annotated source: mesothelial cell of peritoneum
annotated property: subClassOf
annotated target: mesothelial cell
is inferred: true

Axiom
annotated source: mesothelial cell of peritoneum
annotated property: definition
annotated target: A mesothelial cell that is part of the peritoneum.
database_cross_reference: GOC:tfm

Axiom
annotated source: mesothelial cell of peritoneum
annotated property: has_exact_synonym
annotated target: peritoneal mesothelial cell
database_cross_reference: FMA:86736

mesothelial cell of pleura
type: Class
equivalent class: Class
  intersection of: mesothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000977
subclass of: mesothelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000977
definition: A mesothelial cell that is part of the pleura.
database_cross_reference: FMA:86737
has_exact_synonym: pleural mesothelial cell
has OBO namespace: cell

Axiom
annotated source: mesothelial cell of pleura
annotated property: subClassOf
annotated target: mesothelial cell
is inferred: true

Axiom
annotated source: mesothelial cell of pleura
annotated property: definition
annotated target: A mesothelial cell that is part of the pleura.
database_cross_reference: GOC:tfm

Axiom
annotated source: mesothelial cell of pleura
annotated property: has_exact_synonym
annotated target: pleural mesothelial cell
database_cross_reference: FMA:86737

mesothelial cell of parietal pleura
type: Class
equivalent class: Class
  intersection of: mesothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002400
subclass of: mesothelial cell of pleura
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002400
definition: A mesothelial cell that is part of the parietal pleura.
database_cross_reference: FMA:86738
has OBO namespace: cell

Axiom
annotated source: mesothelial cell of parietal pleura
annotated property: definition
annotated target: A mesothelial cell that is part of the parietal pleura.
database_cross_reference: GOC:tfm

mesothelial cell of visceral pleura
type: Class
equivalent class: Class
  intersection of: mesothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002401
subclass of: epithelial cell of lung
subclass of: mesothelial cell of pleura
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002401
definition: A mesothelial cell that is part of the visceral pleura.
database_cross_reference: FMA:86739
has OBO namespace: cell

Axiom
annotated source: mesothelial cell of visceral pleura
annotated property: definition
annotated target: A mesothelial cell that is part of the visceral pleura.
database_cross_reference: GOC:tfm

lung endothelial cell
type: Class
equivalent class: Class
  intersection of: endothelial cell of vascular tree
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002048
subclass of: epithelial cell of lung
subclass of: endothelial cell of vascular tree
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000102
has OBO namespace: cl
has_related_synonym: endothelial cell of lung
has_related_synonym: pulmonary vessel endothelial cell

pulmonary artery endothelial cell
type: Class
equivalent class: Class
  intersection of: endothelial cell of vascular tree
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002012
subclass of: endothelial cell of artery
subclass of: Restriction
  on property: part of
  some values from: UBERON_0005317
database_cross_reference: BTO:0001141
has OBO namespace: cl
has_related_synonym: PAEC cell

Axiom
annotated source: pulmonary artery endothelial cell
annotated property: has_related_synonym
annotated target: PAEC cell
database_cross_reference: BTO:0001141

oral mucosa squamous cell
type: Class
equivalent class: Class
  intersection of: squamous epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002424
subclass of: squamous epithelial cell
subclass of: epithelial cell of alimentary canal
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002424
definition: Squamous cell of oral epithelium.
database_cross_reference: CALOHA:TS-1252
has_related_synonym: oral cavity mucosa squamous cell
has_related_synonym: oral cavity mucosa squamous epithelial cell
has_related_synonym: oral mucosa squamous epithelial cell
has_related_synonym: oral mucosa squamous epithelial cells

Axiom
annotated source: oral mucosa squamous cell
annotated property: definition
annotated target: Squamous cell of oral epithelium.
database_cross_reference: NPX:PDR

Axiom
annotated source: oral mucosa squamous cell
annotated property: has_related_synonym
annotated target: oral cavity mucosa squamous cell
database_cross_reference: CALOHA:TS-1252

Axiom
annotated source: oral mucosa squamous cell
annotated property: has_related_synonym
annotated target: oral cavity mucosa squamous epithelial cell
database_cross_reference: CALOHA:TS-1252

Axiom
annotated source: oral mucosa squamous cell
annotated property: has_related_synonym
annotated target: oral mucosa squamous epithelial cell
database_cross_reference: CALOHA:TS-1252

Axiom
annotated source: oral mucosa squamous cell
annotated property: has_related_synonym
annotated target: oral mucosa squamous epithelial cells
database_cross_reference: CALOHA:TS-1252

muscle fibroblast
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001630
subclass of: fibroblast
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001630
definition: Fibroblast from muscle organ.
database_cross_reference: CALOHA:TS-0643

Axiom
annotated source: muscle fibroblast
annotated property: definition
annotated target: Fibroblast from muscle organ.
database_cross_reference: NPX:PDR

bone marrow hematopoietic cell
type: Class
equivalent class: Class
  intersection of: hematopoietic cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002371
subclass of: hematopoietic cell
subclass of: bone marrow cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0012429
definition: Hematopoietic cells resident in the bone marrow. Include: hematopoietic stem cells (lymphoid stem cells and myeloid stem cells) and the precursor cells for thrombocytes, erythrocytes, basophils, neutrophils, eosinophils, monocytes and lymphocytes.
database_cross_reference: CALOHA:TS-2109
has_related_synonym: bone marrow hematopoietic cells
has_related_synonym: bone marrow poietic cells

Axiom
annotated source: bone marrow hematopoietic cell
annotated property: definition
annotated target: Hematopoietic cells resident in the bone marrow. Include: hematopoietic stem cells (lymphoid stem cells and myeloid stem cells) and the precursor cells for thrombocytes, erythrocytes, basophils, neutrophils, eosinophils, monocytes and lymphocytes.
database_cross_reference: NPX:PDR

Axiom
annotated source: bone marrow hematopoietic cell
annotated property: has_related_synonym
annotated target: bone marrow hematopoietic cells
database_cross_reference: CALOHA:TS-2109

Axiom
annotated source: bone marrow hematopoietic cell
annotated property: has_related_synonym
annotated target: bone marrow poietic cells
database_cross_reference: CALOHA:TS-2109

peripheral blood mononuclear cell
type: Class
equivalent class: Class
  intersection of: mononuclear cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000178
subclass of: circulating cell
subclass of: mononuclear cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000178
definition: A leukocyte with a single non-segmented nucleus in the mature form found in the circulatory pool of blood.
created by: TermGenie
creation date: 2014-02-11T17:29:04Z
has OBO namespace: cell
id: CL:2000001

Axiom
annotated source: peripheral blood mononuclear cell
annotated property: definition
annotated target: A leukocyte with a single non-segmented nucleus in the mature form found in the circulatory pool of blood.
database_cross_reference: GOC:TermGenie

microvascular endothelial cell
type: Class
equivalent class: Class
  intersection of: blood vessel endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0008339
subclass of: blood vessel endothelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0008339
definition: Any blood vessel endothelial cell that is part of a microvascular endothelium.
created by: TermGenie
creation date: 2014-06-04T15:07:42Z
has OBO namespace: cell
id: CL:2000008

Axiom
annotated source: microvascular endothelial cell
annotated property: definition
annotated target: Any blood vessel endothelial cell that is part of a microvascular endothelium.
database_cross_reference: GOC:TermGenie

dermis blood vessel endothelial cell
type: Class
equivalent class: Class
  intersection of: blood vessel endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002067
subclass of: blood vessel endothelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002067
definition: Any blood vessel endothelial cell that is part of a dermis.
created by: TermGenie
creation date: 2014-06-04T15:12:06Z
has OBO namespace: cell
id: CL:2000010

Axiom
annotated source: dermis blood vessel endothelial cell
annotated property: definition
annotated target: Any blood vessel endothelial cell that is part of a dermis.
database_cross_reference: GOC:TermGenie

fibroblast of skin of abdomen
type: Class
equivalent class: Class
  intersection of: skin fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001416
subclass of: skin fibroblast
subclass of: Restriction
  on property: part of
  some values from: UBERON_0001416
definition: Any skin fibroblast that is part of a skin of abdomen.
created by: TermGenie
creation date: 2014-06-04T15:18:16Z
has OBO namespace: cell
id: CL:2000013

Axiom
annotated source: fibroblast of skin of abdomen
annotated property: definition
annotated target: Any skin fibroblast that is part of a skin of abdomen.
database_cross_reference: GOC:TermGenie

lung microvascular endothelial cell
type: Class
equivalent class: Class
  intersection of: lung endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0008339
subclass of: lung endothelial cell
subclass of: microvascular endothelial cell
definition: Any lung endothelial cell that is part of a microvascular endothelium.
created by: TermGenie
creation date: 2014-06-04T16:00:56Z
has OBO namespace: cell
id: CL:2000016

Axiom
annotated source: lung microvascular endothelial cell
annotated property: definition
annotated target: Any lung endothelial cell that is part of a microvascular endothelium.
database_cross_reference: GOC:TermGenie

compound eye photoreceptor cell
type: Class
equivalent class: Class
  intersection of: photoreceptor cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000018
subclass of: eye photoreceptor cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000018
definition: Any photoreceptor cell that is part of a compound eye.
created by: TermGenie
creation date: 2014-06-24T23:16:45Z
has OBO namespace: cell
id: CL:2000019

Axiom
annotated source: compound eye photoreceptor cell
annotated property: definition
annotated target: Any photoreceptor cell that is part of a compound eye.
database_cross_reference: GOC:TermGenie

cardiac septum cell
type: Class
equivalent class: Class
  intersection of: native cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002099
subclass of: anatomical entity
subclass of: native cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002099
definition: Any native cell that is part of a cardiac septum.
created by: TermGenie
creation date: 2014-06-24T23:17:07Z
has OBO namespace: cell
id: CL:2000022

Axiom
annotated source: cardiac septum cell
annotated property: definition
annotated target: Any native cell that is part of a cardiac septum.
database_cross_reference: GOC:TermGenie

central nervous system neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: UBERON_0001017
subclass of: neuron
subclass of: Restriction
  on property: has soma location
  some values from: UBERON_0001017
definition: Any neuron that is part of a central nervous system.
created by: TermGenie
creation date: 2014-06-25T01:17:43Z
has OBO namespace: cell
id: CL:2000029

Axiom
annotated source: central nervous system neuron
annotated property: definition
annotated target: Any neuron that is part of a central nervous system.
database_cross_reference: GOC:TermGenie

peripheral nervous system neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: UBERON_0000010
subclass of: neuron
subclass of: Restriction
  on property: has soma location
  some values from: UBERON_0000010
definition: Any neuron that is part of a peripheral nervous system.
created by: TermGenie
creation date: 2014-06-25T02:28:17Z
has OBO namespace: cell
id: CL:2000032

Axiom
annotated source: peripheral nervous system neuron
annotated property: definition
annotated target: Any neuron that is part of a peripheral nervous system.
database_cross_reference: GOC:TermGenie

embryonic fibroblast
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000922
subclass of: fibroblast
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000922
definition: Any fibroblast that is part of a embryo.
created by: TermGenie
creation date: 2014-07-09T00:12:00Z
has OBO namespace: cell
id: CL:2000042

Axiom
annotated source: embryonic fibroblast
annotated property: definition
annotated target: Any fibroblast that is part of a embryo.
database_cross_reference: GOC:TermGenie

brain microvascular endothelial cell
type: Class
equivalent class: Class
  intersection of: microvascular endothelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000955
subclass of: neural cell
subclass of: microvascular endothelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000955
definition: Any microvascular endothelial cell that is part of a brain.
created by: TermGenie
creation date: 2014-07-09T00:24:53Z
has OBO namespace: cell
id: CL:2000044

Axiom
annotated source: brain microvascular endothelial cell
annotated property: definition
annotated target: Any microvascular endothelial cell that is part of a brain.
database_cross_reference: GOC:TermGenie

ventricular cardiac muscle cell
type: Class
equivalent class: Class
  intersection of: cardiac muscle cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002082
subclass of: cardiac muscle cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002082
definition: Any cardiac muscle cell that is part of a cardiac ventricle.
created by: TermGenie
creation date: 2014-08-12T20:50:28Z
has OBO namespace: cell
id: CL:2000046

Axiom
annotated source: ventricular cardiac muscle cell
annotated property: definition
annotated target: Any cardiac muscle cell that is part of a cardiac ventricle.
database_cross_reference: GOC:TermGenie

brainstem motor neuron
type: Class
equivalent class: Class
  intersection of: motor neuron
  intersection of: Restriction
    on property: has soma location
    some values from: UBERON_0002298
subclass of: motor neuron
subclass of: central nervous system neuron
subclass of: Restriction
  on property: has soma location
  some values from: UBERON_0002298
definition: Any motor neuron that is part of a brainstem.
created by: TermGenie
creation date: 2014-10-02T23:52:53Z
has OBO namespace: cell
id: CL:2000047

Axiom
annotated source: brainstem motor neuron
annotated property: definition
annotated target: Any motor neuron that is part of a brainstem.
database_cross_reference: GOC:TermGenie

ovarian fibroblast
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000992
subclass of: fibroblast
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000992
definition: Any fibroblast that is part of a female gonad.
created by: TermGenie
creation date: 2014-10-07T17:57:42Z
has OBO namespace: cell
id: CL:2000063
comment: http://www.sciencellonline.com/site/productInformation.php

Axiom
annotated source: ovarian fibroblast
annotated property: definition
annotated target: Any fibroblast that is part of a female gonad.
database_cross_reference: GOC:TermGenie

ovarian surface epithelial cell
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0000992
subclass of: anatomical entity
subclass of: epithelial cell
subclass of: Restriction
  on property: part of
  some values from: UBERON_0000992
definition: Any epithelial cell that is part of a female gonad.
created by: TermGenie
creation date: 2014-10-07T17:59:13Z
has OBO namespace: cell
id: CL:2000064
comment: http://www.sciencellonline.com/site/productInformation.php

Axiom
annotated source: ovarian surface epithelial cell
annotated property: definition
annotated target: Any epithelial cell that is part of a female gonad.
database_cross_reference: GOC:TermGenie

cardiac ventricle fibroblast
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002082
subclass of: fibroblast of cardiac tissue
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002082
definition: Any fibroblast that is part of a cardiac ventricle.
created by: TermGenie
creation date: 2014-10-07T18:35:38Z
has OBO namespace: cell
id: CL:2000066
comment: http://www.sciencellonline.com/site/productInformation.php

Axiom
annotated source: cardiac ventricle fibroblast
annotated property: definition
annotated target: Any fibroblast that is part of a cardiac ventricle.
database_cross_reference: GOC:TermGenie

cardiac atrium fibroblast
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002081
subclass of: fibroblast of cardiac tissue
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002081
definition: Any fibroblast that is part of a cardiac atrium.
created by: TermGenie
creation date: 2014-10-07T18:36:54Z
has OBO namespace: cell
id: CL:2000067
comment: http://www.sciencellonline.com/site/productInformation.php

Axiom
annotated source: cardiac atrium fibroblast
annotated property: definition
annotated target: Any fibroblast that is part of a cardiac atrium.
database_cross_reference: GOC:TermGenie

pericardium fibroblast
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0002407
subclass of: fibroblast
subclass of: Restriction
  on property: part of
  some values from: UBERON_0002407
definition: Any fibroblast that is part of a pericardium.
created by: TermGenie
creation date: 2014-10-07T18:38:06Z
has OBO namespace: cell
id: CL:2000068
comment: http://www.sciencellonline.com/site/productInformation.php

Axiom
annotated source: pericardium fibroblast
annotated property: definition
annotated target: Any fibroblast that is part of a pericardium.
database_cross_reference: GOC:TermGenie

optic choroid fibroblast
type: Class
equivalent class: Class
  intersection of: fibroblast
  intersection of: Restriction
    on property: part of
    some values from: UBERON_0001776
subclass of: fibroblast
definition: Any fibroblast that is part of a optic choroid.
created by: TermGenie
creation date: 2014-10-07T18:50:43Z
has OBO namespace: cell
id: CL:2000070
comment: http://www.sciencellonline.com/site/productInformation.php