2023-02-13 definition expand assertion to term replaced by EnvO-Lite-GSC plurals A is disconnected_from B if they have no parts in common. Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: (BFO_0000050 some ?X) and (BFO_0000050 some ?Y) non_overlapping_with ENVO disconnected_from true true disconnected_from A is disconnected_from B if they have no parts in common. https://orcid.org/0000-0002-6601-2165 Disposition slim environmental_hazards envoANZSoil envoAstro envoAtmo envoCesab envoCmecs envoEOVs envoEmpo envoMarine envoMeo envoNceas envoOmics envoPlastics envoPolar Pathology slim nlcd2011 Relational slim: types of quality that require an additional entity in order to exist ro-eco Scalar slim Value slim wwfBiome subset_property synonym_type_property consider has_alternative_id has_broad_synonym database_cross_reference has_exact_synonym has_narrow_synonym has_obo_format_version has_obo_namespace has_related_synonym has_synonym_type in_subset shorthand BFO:0000050 ENVO part_of part_of BFO:0000051 ENVO has_part has_part BFO:0000054 ENVO realized_in realized_in BFO:0000055 ENVO realizes realizes BFO:0000062 ENVO preceded_by preceded_by BFO:0000063 ENVO precedes precedes BFO:0000066 ENVO occurs_in occurs_in BFO:0000067 ENVO contains_process contains_process A duck swimming in a pond is partially surrounded by air and partially surrounded by water. x partially_surrounded_by y if and only if (1) x is adjacent to y and for the region r that is adjacent to x, r partially overlaps y (2) the shared boundary between x and y occupies a non-trivial proportion of the outermost boundary of x ENVO:01001307 ENVO partially_surrounded_by partially_surrounded_by Definition modified from 'surrounded by'. partially_surrounded_by A relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist through the separation or transformation of a part of the old entity, and the new entity inherits a significant portion of the matter belonging to that part of the old entity. ENVO:01003004 ENVO derives_from_part_of derives_from_part_of derives from part of ENVO:02500006 ENVO results_in_transformation_into results_in_transformation_into results in transformation into Afforestation results in the expansion of a forest. A process, p, results in the expansion of a material entity, m, if the spatial extent of m is increased as a result of participating in p. ENVO:02500016 ENVO results_in_expansion_of results_in_expansion_of results in expansion of ENVO:02500020 ENVO results_in_proliferation_of results_in_proliferation_of To be ceded to RO results in proliferation of A relation between a process and a disposition such that the existence of the disposition is caused by the execution of the process. Consider ceding to RO https://orcid.org/0000-0002-6601-2165 2018-11-03T20:58:13Z ENVO:2000036 ENVO generates generates generates ENVO:2100001 ENVO obsolete_determined_by obsolete_determined_by obsolete determined by true ENVO:2100007 ENVO obsolete_determined_by_part_of obsolete_determined_by_part_of obsolete determined by part of true RO:0000052 ENVO characteristic_of characteristic_of RO:0000053 ENVO has_characteristic has_characteristic RO:0000056 ENVO participates_in participates_in RO:0000057 ENVO has_participant has_participant RO:0000059 ENVO concretizes concretizes RO:0000085 ENVO has_function has_function RO:0000086 ENVO has_quality has_quality RO:0000087 ENVO has_role has_role RO:0000091 ENVO has_disposition has_disposition RO:0001000 ENVO derives_from derives_from RO:0001001 ENVO derives_into derives_into RO:0001015 ENVO location_of location_of RO:0001018 ENVO contained_in contained_in RO:0001019 ENVO contains contains RO:0001025 ENVO located_in located_in RO:0002007 ENVO bounding_layer_of bounding_layer_of RO:0002084 ENVO during_which_ends during_which_ends RO:0002088 ENVO during_which_starts during_which_starts RO:0002091 ENVO starts_during starts_during RO:0002131 ENVO overlaps overlaps RO:0002150 ENVO continuous_with continuous_with RO:0002151 ENVO partially_overlaps partially_overlaps RO:0002170 ENVO connected_to connected_to RO:0002176 ENVO connects connects connects RO:0002180 ENVO has_component has_component RO:0002211 ENVO regulates_(processual) regulates_(processual) regulates (processual) RO:0002212 ENVO negatively_regulates negatively_regulates RO:0002215 ENVO capable_of capable_of RO:0002218 ENVO obsolete_has_active_participant obsolete_has_active_participant RO:0002219 ENVO surrounded_by surrounded_by surrounded by RO:0002220 ENVO adjacent_to adjacent_to RO:0002229 ENVO ends ends RO:0002232 ENVO has_end_location has_end_location RO:0002233 ENVO has_input has_input RO:0002234 ENVO has_output has_output RO:0002297 ENVO results_in_formation_of results_in_formation_of RO:0002303 ENVO has_habitat has_habitat has habitat RO:0002314 ENVO characteristic_of_part_of characteristic_of_part_of RO:0002331 ENVO involved_in involved_in RO:0002350 ENVO member_of member_of RO:0002351 ENVO has_member has_member RO:0002352 ENVO input_of input_of RO:0002353 ENVO output_of output_of RO:0002354 ENVO formed_as_result_of formed_as_result_of RO:0002371 ENVO attached_to attached_to RO:0002376 ENVO tributary_of tributary_of RO:0002377 ENVO distributary_of distributary_of RO:0002411 ENVO causally_upstream_of causally_upstream_of RO:0002418 ENVO causally_upstream_of_or_within causally_upstream_of_or_within RO:0002427 ENVO causally_downstream_of_or_within causally_downstream_of_or_within RO:0002430 ENVO involved_in_negative_regulation_of involved_in_negative_regulation_of RO:0002473 ENVO composed_primarily_of composed_primarily_of RO:0002479 ENVO has_part_that_occurs_in has_part_that_occurs_in RO:0002500 ENVO causal_agent_in_process causal_agent_in_process RO:0002503 ENVO towards towards RO:0002507 ENVO determined_by determined_by RO:0002509 ENVO determined_by_part_of determined_by_part_of RO:0002608 ENVO process_has_causal_agent process_has_causal_agent 2013-05-08T07:33:05Z has_condition ENVO has_condition Experimental relation used in EnvO. A condition defines a restricted range of a given quality or combination of qualities. If an environment class, E, has_condition C, then all qualities listed in C are restricted to the ranges defined in C in E. This is not intended as a logical conditional. has_condition has_increased_levels_of ENVO has_increased_levels_of An environmental material primarily composed of dihydrogen oxide in its liquid form. water EcoLexicon:water LTER:617 https://en.wikipedia.org/wiki/Water ENVO ENVO:00002006 liquid water An environmental material primarily composed of dihydrogen oxide in its liquid form. MA:ma Sediment is an environmental substance comprised of any particulate matter that can be transported by fluid flow and which eventually is deposited as a layer of solid particles on the bedor bottom of a body of water or other liquid. EcoLexicon:sediment EcoLexicon:sedimentation LTER:492 LTER:493 SWEETRealm:Sediment https://en.wikipedia.org/wiki/Sediment ENVO ENVO:00002007 It is recommended to use a combination of sediment terms to describe a more specific sediment type. sediment Sediment is an environmental substance comprised of any particulate matter that can be transported by fluid flow and which eventually is deposited as a layer of solid particles on the bedor bottom of a body of water or other liquid. https://en.wikipedia.org/wiki/Sediment Water which contains a significant concentration of dissolved salts. EcoLexicon:saltwater SWEETRealm:SalineWater SWEETRealm:SaltWater https://en.wikipedia.org/wiki/Saline_water salt water ENVO ENVO:00002010 The threshold salt concentration for classifying water as saline varies, but typically begins at about 1,000 to 3,000 parts salt per million parts water or 0.1–0.3% salt by weight. saline water Water which has a low concentration of dissolved solutes, particularly that of sodium chloride. EcoLexicon:fresh_water LTER:216 SWEETRealm:FreshWater https://en.wikipedia.org/wiki/Fresh_water freshwater ENVO sweet water ENVO:00002011 The lower bound of solute concentration required for water to be considered freshwater is variable, but is always less than that of seawater, and often cited as less than 1 gram of solutes per 1 litre of water. fresh water Sterile water is water which does not contain lliving organisms. ENVO ENVO:00005791 sterile water The narrow region of soil that is directly influenced by root secretions and associated soil microorganisms. LTER:472 ENVO ENVO:00005801 rhizosphere The narrow region of soil that is directly influenced by root secretions and associated soil microorganisms. https://en.wikipedia.org/wiki/Rhizosphere_%28ecology%29 A portion of environmental material is a fiat object part which forms the medium or part of the medium of an environmental system. portion of environmental material ENVO ENVO:00010483 Everything under this parent must be a mass noun. All subclasses are to be understood as being composed primarily of the named entity, rather than restricted to that entity. For example, "ENVO:water" is to be understood as "environmental material composed primarly of some CHEBI:water". This class is currently being aligned to the Basic Formal Ontology. Following this alignment, its definition and the definitions of its subclasses will be revised. environmental material A portion of environmental material is a fiat object part which forms the medium or part of the medium of an environmental system. DOI:10.1186/2041-1480-4-43 MA:ma ORCID:0000-0002-4366-3088 URL:http://ontology.buffalo.edu/smith/articles/niches.html Environmental material derived from living organisms and composed primarily of one or more biomacromolecules. ORCID:0000-0002-4366-3088 2010-03-20T08:40:04Z EcoLexicon:organic_material biomass ENVO ENVO:01000155 organic material Environmental material derived from living organisms and composed primarily of one or more biomacromolecules. ISBN:978-0-618-45504-1 ORCID:0000-0002-4366-3088 A system which has the disposition to environ one or more material entities. 2013-09-23T16:04:08Z EcoLexicon:environment environment ENVO ENVO:01000254 In ENVO's alignment with the Basic Formal Ontology, this class is being considered as a subclass of a proposed BFO class "system". The relation "environed_by" is also under development. Roughly, a system which includes a material entity (at least partially) within its site and causally influences that entity may be considered to environ it. Following the completion of this alignment, this class' definition and the definitions of its subclasses will be revised. environmental system A system which has the disposition to environ one or more material entities. DOI:10.1186/2041-1480-4-43 An aquatic environment which is determined by freshwater. Water (non-saline) fresh water environment ENVO ENVO:01000306 freshwater environment Water (non-saline) http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which has its properties and dynamics determined by saline water. Water (saline) ENVO ENVO:01000307 saline water environment Water (saline) http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environment whose dynamics are strongly influenced by water. ENVO ENVO:01000317 aquatic environment A site which has its extent determined by the presence or influence of one or more components of an environmental system or the processes occurring therein. ENVO environmental area ENVO:01000408 Formerly, this class was an experimental class and a subclass of "environmental feature". It is now aligned to BFO. The class was not obsoleted as the core semantics maintained their stability through its transition. environmental zone An environmental material which is in a liquid state. ENVO ENVO:01000815 This is a defined class: most of its subclasses will not be asserted, but filled by inference. liquid environmental material An environmental system which is determined by materials bearing roughly homogeneous qualities. ENVO ENVO:01000997 Organisational class. Not intended for annotation. environmental system determined by a quality An environmental system determined by the presence of a plant rhizosphere. Plant rhizosphere ENVO ENVO:01000999 rhizosphere environment Plant rhizosphere http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which is determined by a living organism. ENVO host-associated environment ENVO:01001000 environmental system determined by an organism An environmental system determined by a green plant. Plant plant environment Viridiplantae-associated environment ENVO ENVO:01001001 plant-associated environment Plant http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system determined by an animal. Animal animal environment Metazoan-associated environment ENVO ENVO:01001002 animal-associated environment Animal http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ Non-saline ENVO ENVO:01001003 This class (term) is defined by the lack of a quality (i.e. the lack of salinity or increased osmolarity), which is not best-practice ontologically. Use for annotation is generally discouraged and users should use classes which positively describe the material or environment sampled (i.e. stating the qualities the entity has, rather than those it does not). non-saline environment Non-saline http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ Sediment which has its porespace filled by water which has very low levels of sodium chloride and/or other salts. ENVO ENVO:01001028 We do not specify numeric thresholds for saline vs. non-saline here, as this is variable. Consider specifying this on the information and/or data layer for your purposes. If you require an ENVO class with a fixed threshold, please request one using our issue tracker. sediment permeated by freshwater An environmental system which has its properties and dynamics determined by feces. Animal distal gut ENVO ENVO:01001029 fecal environment Animal distal gut http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ The label of this EMPO class is ambiguous, but pers. comm. with L Thompson (http://orcid.org/0000-0002-3911-1280) reveals that this is essentially limited to fecal samples. An environmental system which has its properties and dynamics determined by a bodily secretion of a metazoan. Animal secretion ENVO ENVO:01001030 environment determined by a metazoan secretion Animal secretion http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which has its properties and dynamics determined by a substance produced by a plant. Plant secretion ENVO ENVO:01001031 environment determined by a plant substance Plant secretion http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which has its properties and dynamics determined by a biofilm on the surface of a plant. Plant surface ENVO ENVO:01001032 environment determined by a biofilm on a plant surface Plant surface http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which has its properties and dynamics determined by a digestive tract. Animal proximal gut ENVO ENVO:01001033 digestive tract environment Animal proximal gut http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ This EMPO class includes examples of microbial environments determined by the "gut intestine, gizzard, crop, lumen, [and] mucosa". An environmental system which has its properties and dynamics determined by a biofilm on the surface of a animal. Animal surface ENVO ENVO:01001034 environment determined by a biofilm on an animal surface Animal surface http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which has its properties and dynamics determined by a biofilm on the surface of a fungus. Fungus surface ENVO ENVO:01001035 environment determined by a biofilm on a fungal surface Fungus surface http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ Sediment which has its porespace filled by water with increased levels of sodium chloride and other salts. ENVO ENVO:01001036 We do not specify numeric thresholds for saline vs. non-saline here, as this is variable. Consider specifying this on the information and/or data layer for your purposes. If you require an ENVO class with a fixed threshold, please request one using our issue tracker. sediment permeated by saline water An environment which is determined by materials which bear significant concentrations of salts. Saline ENVO ENVO:01001040 The thresholds for "significant" concentrations of salts vary widely and thus no committment is made in this class. Subclasses with more explicit thresholds can be made upon request. saline environment Saline http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system determined by a fungal structure. Fungus fungus environment fungus-associated environment ENVO ENVO:01001041 fungi-associated environment Fungus http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which has its properties and dynamics determined by sterile water. Negative ENVO ENVO:01001042 This term can be understood as a negative experimental control primarily composed of sterile water. The quantity of sterile water used may be contaminated; to express pure sterile water, please use http://purl.obolibrary.org/obo/ENVO_00005791 sterile water environment Negative http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which has its properties and dynamics determined by hypersaline water. Hypersaline (saline) ENVO ENVO:01001043 hypersaline water environment Hypersaline (saline) http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ Examples inlcude water from hypersaline samples or brines (>50 psu) An environmental system which has its properties and dynamics determined by soil. Soil (non-saline) ENVO ENVO:01001044 soil environment Soil (non-saline) http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which has its properties and dynamics determined by the subsurface zone of a planet. ENVO ENVO:01001046 planetary subsurface environment An environmental system which has its properties and dynamics determined by those parts of a planetary subsurface zone which are not saline. Subsurface (non-saline) ENVO ENVO:01001047 non-saline planetary subsurface environment Subsurface (non-saline) http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which has its properties and dynamics determined by sediment. ENVO ENVO:01001048 sediment environment An environmental system which has its properties and dynamics determined by sediment permeated by non-saline water. Sediment (non-saline) ENVO ENVO:01001049 non-saline sediment environment Sediment (non-saline) http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which has its properties and dynamics determined by sediment permeated by saline water. Sediment (saline) ENVO ENVO:01001050 saline sediment environment Sediment (saline) http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which has its properties and dynamics determined by a biofilm on a surface which is exposed to non-saline materials. Surface (non-saline) ENVO ENVO:01001051 environment determined by a biofilm on a non-saline surface Surface (non-saline) http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which has its properties and dynamics determined by an aerosol. ENVO ENVO:01001052 aerosol environment An environmental system which has its properties and dynamics determined by a saline aerosol. Aerosol (saline) ENVO ENVO:01001053 saline aerosol environment Aerosol (saline) http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ seaspray or other aerosolized saline material (>5 psu) An environmental system which has its properties and dynamics determined by an aerosol with a low concentration of dissolved solutes. Aerosol (non-saline) ENVO ENVO:01001054 non-saline aerosol environment Aerosol (non-saline) http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ aerosolized dust or liquid An environmental system determined by part of a living or dead animal, or a whole small animal. Animal corpus ENVO ENVO:01001055 environment associated with an animal part or small animal Animal corpus http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which has its properties and dynamics determined by a biofilm on a surface which is exposed to saline materials. Surface (saline) ENVO ENVO:01001056 environment determined by a biofilm on a saline surface Surface (saline) http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system determined by part of a living or dead plant, or a whole small plant. Plant corpus ENVO ENVO:01001057 environment associated with a plant part or small plant Plant corpus http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system determined by part of a living or dead fungus. Fungus corpus ENVO ENVO:01001058 environment associated with a fungal tissue Fungus corpus http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ A cell culture which is composed of a microbial community of known composition. Mock community ENVO ENVO:01001059 Mock communities are typically used as positive controls in experiments. mock community culture Mock community http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ A cell culture which is composed of a single population of bacterial or archaeal cells. Single strain ENVO ENVO:01001060 single strain cell culture Single strain http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/ An environmental system which includes both living and non-living components. LTER:173 ENVO ENVO:01001110 This class will be primarily filled by inference, any environmental system which necessarily includes living parts should be autoclassified here. ecosystem An environmental system which includes both living and non-living components. https://en.wikipedia.org/wiki/Ecosystem LTER:173 https://vocab.lternet.edu/vocab/vocab/index.php?tema=173&/ecosystems A cell culture is a growth of cells in vitro in an artificial medium for experimental research. https://en.wikipedia.org/wiki/Cell_culture ENVO ENVO:02000008 cell culture A cell culture is a growth of cells in vitro in an artificial medium for experimental research. URL:http://stemcells.nih.gov/StemCells/Templates/StemCellContentPage.aspx?NRMODE=Published&NRNODEGUID=%7b3C35BAB6-0FE6-4C4E-95F2-2CB61B58D96D%7d&NRORIGINALURL=%2finfo%2fglossary%2easp&NRCACHEHINT=NoModifyGuest#cellculture A liquid or a gas. fluid ENVO ENVO:02000140 fluid environmental material A liquid or a gas. https://github.com/EnvironmentOntology/envo/issues/940 An environment which is determined by an anatomical entity. ENVO ENVO:2100000 anatomical entity environment