Title of the EnzymeML Document.
The version of the EnzymeML Document.
Description of the EnzymeML Document.
Date the EnzymeML Document was created.
Date the EnzymeML Document was modified.
Contains descriptions of all authors that are part of the experiment.
Contains descriptions of all vessels that are part of the experiment.
Contains descriptions of all proteins that are part of the experiment
that may be referenced in reactions,
measurements, and equations.
Contains descriptions of all complexes that are part of the experiment
that may be referenced in reactions,
measurements, and equations.
Contains descriptions of all reactants that are part of the experiment
that may be referenced in reactions,
measurements, and equations.
Contains descriptions of all reactions that are part of the
experiment.
Contains descriptions of all measurements that are part of the
experiment.
Contains descriptions of all equations that are part of the
experiment.
Contains descriptions of all parameters that are part of the
experiment and may be used in equations.
Contains references to publications, databases, and arbitrary links to
the web.
Given name of the author or contributor.
Family name of the author or contributor.
Email address of the author or contributor.
Unique identifier of the vessel.
Name of the used vessel.
Volumetric value of the vessel.
Volumetric unit of the vessel.
Whether the volume of the vessel is constant or not. Default is True.
Identifier of the protein, such as a UniProt ID, or a custom
identifier.
Name of the protein.
Whether the concentration of the protein is constant through the
experiment or not. Default is True.
Amino acid sequence of the protein
Identifier of the vessel this protein has been applied to.
EC number of the protein.
Expression host organism of the protein.
Taxonomy identifier of the expression host.
List of references to publications, database entries, etc. that
describe or reference the protein.
Unique identifier of the complex.
Name of the complex.
Whether the concentration of the complex is constant through the
experiment or not. Default is False.
Unique identifier of the vessel this complex has been used in.
Array of IDs the complex contains
Identifier of the small molecule, such as a Pubchem ID, ChEBI ID, or a
custom identifier.
Name of the small molecule.
Whether the concentration of the small molecule is constant through
the experiment or not. Default is False.
Identifier of the vessel this small molecule has been used in.
Canonical Simplified Molecular-Input Line-Entry System (SMILES)
encoding of the small molecule.
International Chemical Identifier (InChI) encoding of the small
molecule.
Hashed International Chemical Identifier (InChIKey) encoding of the
small molecule.
List of synonymous names for the small molecule.
List of references to publications, database entries, etc. that
describe or reference the small molecule.
Unique identifier of the reaction.
Name of the reaction.
Whether the reaction is reversible or irreversible. Default is False.
Mathematical expression of the reaction.
List of reactants that are part of the reaction.
List of products that are part of the reaction.
List of reaction elements that are not part of the reaction but
influence it.
Internal identifier to either a protein or reactant defined in the
EnzymeML Document.
Float number representing the associated stoichiometry.
Internal identifier to either a protein or reactant defined in the
EnzymeML Document.
Role of the modifier in the reaction.
Identifier of a defined species (SmallMolecule, Protein, Complex).
Represents the left hand side of the equation.
Mathematical expression of the equation. Represents the right hand
side of the equation.
Type of the equation.
List of variables that are part of the equation
Identifier of the variable.
Name of the variable.
Equation symbol of the variable.
Identifier of the parameter.
Name of the parameter.
Equation symbol of the parameter.
Numerical value of the estimated parameter.
Unit of the estimated parameter.
Initial value that was used for the parameter estimation.
Upper bound for the parameter value that was used for the parameter
estimation
Lower bound for the parameter value that was used for the parameter
estimation
Whether this parameter should be varied or not in the context of an
optimization.
Standard error of the estimated parameter.
Specifies if this parameter is constant. Default is True.
Unique identifier of the measurement.
Name of the measurement
Measurement data of all species that were part of the measurement.
A species refers to a Protein, Complex, or
SmallMolecule.
User-defined group ID to signal relationships between measurements.
pH value of the measurement.
Temperature of the measurement.
Unit of the temperature of the measurement.
The identifier for the described reactant.
Amount of the the species before starting the measurement. This field
can be used for specifying the prepared amount
of a species in the reaction mix. Not to be
confused with , specifying the concentration
of a species at the first data point from
the array.
Initial amount of the measurement data. This must be the same as the
first data point in the array.
SI unit of the data that was measured.
Data that was measured.
Corresponding time points of the .
Unit of the time points of the .
Type of data that was measured (e.g. concentration, absorbance, etc.)
Whether or not the data has been generated by simulation. Default
is False.
Base units that define the unit.
Unique identifier of the unit definition.
Common name of the unit definition.
Kind of the base unit (e.g., meter, kilogram, second).
Exponent of the base unit in the unit definition.
Multiplier of the base unit in the unit definition.
Scale of the base unit in the unit definition.