http://dx.doi.org/10.1186/2041-1480-4-32
Gary Grumbling
Kei Ito
Simon Reeve
Volker Hartenstein
http://orcid.org/0000-0002-0587-9355
http://orcid.org/0000-0002-2504-3379
Michael Ashburner
http://orcid.org/0000-0001-5948-3092
http://orcid.org/0000-0002-0027-0858
http://orcid.org/0000-0002-1373-1705
http://orcid.org/0000-0002-6095-8718
http://orcid.org/0000-0002-7073-9172
An ontology of Drosophila melanogaster anatomy.
Drosophila Anatomy Ontology (DAO)
https://creativecommons.org/licenses/by/4.0/
01:12:2022 13:52
fly_anatomy.ontology
1.2
Use of the -non-classified.owl version of this ontology requires a reasoner. Recommended reasoners are FaCT++, JFACT and ELK.
2022-12-01
symbol
definition
has obsolescence reason
has ontology root term
may be identical to
term replaced by
term replaced by
If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL
is a defining property chain axiom
If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.
is a defining property chain axiom where second argument is reflexive
BrainName official abbreviation
BRAND NAME
BrainName project terms
Terms to hold back pending BrainName paper publication
Involved_in
EmbDevSlim
terms for FlyBase glossary page
FORMULA
FlyTed temp subset for edit tracking purposes
Testis slim
INN
IUPAC NAME
InChI
InChIKey
terms for rd test ontology
SMILES
Lineage clone related term from Tzumin Lee dataset
official symbol used on Virtual Fly Brain
cur
warning of impending obsoletion
FlyBase ribbon terms
Grouping classes that can be excluded
Term not to be used for direct annotation
Term not to be used for direct manual annotation
ChEMBL protein targets summary
AGR slim
Aspergillus GO slim
Candida GO slim
ChEMBL protein targets summary
Generic GO slim
GOA and proteome slim
Metagenomics GO slim
Mouse GO slim
PIR GO slim
Plant GO slim
Fission yeast GO slim
synapse GO slim
Viral GO slim
Yeast GO slim
Prokaryotic GO subset
Stanza contains hidden assertion.
High-level terms not to be used for direct annotation
larval olfactory system
Catalytic activity terms in need of attention
adult olfactory system model
Cell types selected for scRNAseq ribbon
label approved by the SynGO project
Systematic synonym
Terms created by TermGenie that do not follow a template and require additional vetting by editors
Viral overhaul terms
subset_property
synonym_type_property
consider
has_alternative_id
has_broad_synonym
database_cross_reference
has_exact_synonym
has_narrow_synonym
has_obo_format_version
has_obo_namespace
has_related_synonym
has_scope
has_synonym_type
in_subset
shorthand
is part of
my brain is part of my body (continuant parthood, two material entities)
my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
this day is part of this year (occurrent parthood)
a core relation that holds between a part and its whole
Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)
A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
part_of
BFO:0000050
OBO_REL:part_of
external
relationship
part_of
part_of
part of
part of
part_of
http://www.obofoundry.org/ro/#OBO_REL:part_of
has part
my body has part my brain (continuant parthood, two material entities)
my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
this year has part this day (occurrent parthood)
a core relation that holds between a whole and its part
Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)
A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
has_part
BFO:0000051
OBO_REL:has_part
external
relationship
has_part
has_part
has part
has part
has_part
preceded by
x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
is preceded by
preceded_by
http://www.obofoundry.org/ro/#OBO_REL:preceded_by
preceded by
precedes
x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
precedes
BFO:0000066
external
occurs_in
occurs_in
occurs in
inheres in
this fragility is a characteristic of this vase
this red color is a characteristic of this apple
a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
inheres_in
RO:0000052
fly_anatomy.ontology
characteristic_of
characteristic_of
Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.
characteristic of
characteristic_of
bearer of
this apple is bearer of this red color
this vase is bearer of this fragility
Inverse of characteristic_of
A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
bearer_of
is bearer of
RO:0000053
fly_anatomy.ontology
has_characteristic
has_characteristic
has characteristic
has_characteristic
participates in
this blood clot participates in this blood coagulation
this input material (or this output material) participates in this process
this investigator participates in this investigation
a relation between a continuant and a process, in which the continuant is somehow involved in the process
participates_in
participates in
has participant
this blood coagulation has participant this blood clot
this investigation has participant this investigator
this process has participant this input material (or this output material)
a relation between a process and a continuant, in which the continuant is somehow involved in the process
Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
has_participant
http://www.obofoundry.org/ro/#OBO_REL:has_participant
has participant
this catalysis function is a function of this enzyme
a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence
A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists.
function_of
is function of
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
function of
this red color is a quality of this apple
a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence
A quality inheres in its bearer at all times for which the quality exists.
is quality of
quality_of
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
quality of
this investigator role is a role of this person
a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.
is role of
role_of
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
role of
this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)
a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence
A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists.
has_function
has function
this apple has quality this red color
a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence
A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist.
has_quality
has quality
this person has role this investigator role (more colloquially: this person has this role of investigator)
a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
has_role
has role
a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence
has disposition
inverse of has disposition
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
disposition of
contained in
Containment is location not involving parthood, and arises only where some immaterial continuant is involved.
Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):
Intended meaning:
domain: material entity
range: spatial region or site (immaterial continuant)
contained_in
contained in
contains
contains
A relation that holds between two neurons that are electrically coupled via gap junctions.
David Osumi-Sutherland
RO:0002003
fly_anatomy.ontology
electrically_synapsed_to
electrically_synapsed_to
electrically_synapsed_to
The relationship that holds between a trachea or tracheole and an antomical structure that is contained in (and so provides an oxygen supply to).
David Osumi-Sutherland
RO:0002004
fly_anatomy.ontology
tracheates
tracheates
tracheates
tracheates
David Osumi-Sutherland
http://www.ncbi.nlm.nih.gov/pubmed/22402613
RO:0002005
fly_anatomy.ontology
innervated_by
innervated_by
innervated_by
innervated_by
David Osumi-Sutherland
has synaptic terminal of
A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.
dos
2017-05-24T09:30:46Z
has regulatory component activity
A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.
dos
2017-05-24T09:31:01Z
By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.
has negative regulatory component activity
A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.
dos
2017-05-24T09:31:17Z
By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.
has positive regulatory component activity
dos
2017-05-24T09:44:33Z
A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.
has component activity
w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
dos
2017-05-24T09:49:21Z
has component process
dos
2017-09-17T13:52:24Z
Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
directly regulated by
Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
GOC:dos
Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
dos
2017-09-17T13:52:38Z
directly negatively regulated by
Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
GOC:dos
Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
dos
2017-09-17T13:52:47Z
directly positively regulated by
Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
GOC:dos
A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
dos
2017-09-22T14:14:36Z
This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.
has effector activity
A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
GOC:dos
David Osumi-Sutherland
X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)
ends after
David Osumi-Sutherland
starts_at_end_of
X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
immediately preceded by
David Osumi-Sutherland
ends_at_start_of
meets
X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)
immediately precedes
Relation between a neuron and an anatomical structure that its soma is part of.
David Osumi-Sutherland
<http://purl.obolibrary.org/obo/BFO_0000051> some (
<http://purl.obolibrary.org/obo/GO_0043025> and <http://purl.obolibrary.org/obo/BFO_0000050> some ?Y)
RO:0002100
fly_anatomy.ontology
has_soma_location
has_soma_location
has soma location
has_soma_location
relationship between a neuron and a neuron projection bundle (e.g.- tract or nerve bundle) that one or more of its projections travels through.
David Osumi-Sutherland
fasciculates with
(forall (?x ?y)
(iff
(fasciculates_with ?x ?y)
(exists (?nps ?npbs)
(and
("neuron ; CL_0000540" ?x)
("neuron projection bundle ; CARO_0001001" ?y)
("neuron projection segment ; CARO_0001502" ?nps)
("neuron projection bundle segment ; CARO_0001500' " ?npbs)
(part_of ?npbs ?y)
(part_of ?nps ?x)
(part_of ?nps ?npbs)
(forall (?npbss)
(if
(and
("neuron projection bundle subsegment ; CARO_0001501" ?npbss)
(part_of ?npbss ?npbs)
)
(overlaps ?nps ?npbss)
))))))
RO:0002101
fly_anatomy.ontology
fasciculates_with
fasciculates_with
fasciculates with
fasciculates_with
Relation between an anatomical structure (including cells) and a neuron that chemically synapses to it.
Chris Mungall
David Osumi-Sutherland
<http://purl.obolibrary.org/obo/BFO_0000051> some (<http://purl.obolibrary.org/obo/GO_0045211> that part_of some (<http://purl.obolibrary.org/obo/GO_0045202> that has_part some (<http://purl.obolibrary.org/obo/GO_0042734> that <http://purl.obolibrary.org/obo/BFO_0000050> some Y?)))
synapsed by
A relation between a motor neuron and a muscle that it synapses to via a type Ib bouton.
David Osumi-Sutherland
Marta Costa
BFO_0000051 some (GO_0061176 that BFO_0000051 some (that BFO_0000051 some (GO_0045202 that BFO_0000051 some ( that BFO_0000050 some ?Y))))
RO:0002105
fly_anatomy.ontology
synapsed_via_type_Ib_bouton_to
synapsed_via_type_Ib_bouton_to
Expands to: has_part some ('type Ib terminal button' that has_part some ('pre-synaptic membrane' that part_of some ('synapse' that has_part some ('post-synaptic membrane' that part_of some ?Y))))
synapsed_via_type_Ib_bouton_to
synapsed_via_type_Ib_bouton_to
A relation between a motor neuron and a muscle that it synapses to via a type Is bouton.
David Osumi-Sutherland
Marta Costa
BFO_0000051 some (GO_0061177 that BFO_0000051 some (that BFO_0000051 some (GO_0045202 that BFO_0000051 some ( that BFO_0000050 some ?Y))))
RO:0002106
fly_anatomy.ontology
synapsed_via_type_Is_bouton_to
synapsed_via_type_Is_bouton_to
Expands to: has_part some ('type Is terminal button' that has_part some ('pre-synaptic membrane' that part_of some ('synapse' that has_part some ('post-synaptic membrane' that part_of some ?Y))))
synapsed_via_type_Is_bouton_to
synapsed_via_type_Is_bouton_to
A relation between a motor neuron and a muscle that it synapses to via a type II bouton.
David Osumi-Sutherland
Marta Costa
BFO_0000051 some (GO_0061175 that BFO_0000051 some (that BFO_0000051 some (GO_0045202 that BFO_0000051 some ( that BFO_0000050 some ?Y))))
RO:0002107
fly_anatomy.ontology
synapsed_via_type_II_bouton_to
synapsed_via_type_II_bouton_to
Expands to: has_part some ('type II terminal button' that has_part some ('pre-synaptic membrane' that part_of some ('synapse' that has_part some ('post-synaptic membrane' that part_of some ?Y))))
synapsed_via_type_II_bouton_to
synapsed_via_type_II_bouton_to
Relation between a muscle and a motor neuron that synapses to it via a type II bouton.
David Osumi-Sutherland
Marta Costa
BFO_0000051 some (GO_0042734 that BFO_0000050 some (GO_0045202 that BFO_0000051 some (GO_0061174 that BFO_0000051 some GO_0045211 that BFO_0000050 some ?Y)))
Expands to: has_part some ('presynaptic membrane' that part_of some ('synapse' that has_part some ('type II terminal button' that has_part some 'postsynaptic membrane' that part_of some ?Y)))))
synapsed_by_via_type_II_bouton
Relation between a muscle and a motor neuron that synapses to it via a type Ib bouton.
David Osumi-Sutherland
Marta Costa
BFO_0000051 some (GO_0042734 that BFO_0000050 some (GO_0045202 that BFO_0000051 some (GO_0061176 that BFO_0000051 some GO_0045211 that BFO_0000050 some ?Y)))
Expands to: has_part some ('presynaptic membrane' that part_of some ('synapse' that has_part some ('type Ib terminal button' that has_part some 'postsynaptic membrane' that part_of some ?Y)))))
synapsed_by_via_type_Ib_bouton
Relation between a neuron and some structure (e.g.- a brain region) in which it receives (chemical) synaptic input.
Chris Mungall
David Osumi-Sutherland
synapsed in
http://purl.obolibrary.org/obo/BFO_0000051 some (
http://purl.org/obo/owl/GO#GO_0045211 and http://purl.obolibrary.org/obo/BFO_0000050 some (
http://purl.org/obo/owl/GO#GO_0045202 and http://purl.obolibrary.org/obo/BFO_0000050 some ?Y))
has postsynaptic terminal in
Relation between a muscle and a motor neuron that synapses to it via a type Is bouton.
David Osumi-Sutherland
Marta Costa
BFO_0000051 some (GO_0042734 that BFO_0000050 some (GO_0045202 that BFO_0000051 some (GO_0061177 that BFO_0000051 some GO_0045211 that BFO_0000050 some ?Y)))
Expands to: has_part some ('presynaptic membrane' that part_of some ('synapse' that has_part some ('type Is terminal button' that has_part some 'postsynaptic membrane' that part_of some ?Y)))))
synapsed_by_via_type_Is_bouton
Relation between a neuron and some structure (e.g.- a brain region) in which it receives (chemical) synaptic input.
synapses in
<http://purl.obolibrary.org/obo/BFO_0000051> some (<http://purl.obolibrary.org/obo/GO_0042734> that <http://purl.obolibrary.org/obo/BFO_0000050> some (<http://purl.obolibrary.org/obo/GO_0045202> that <http://purl.obolibrary.org/obo/BFO_0000050> some Y?)
has presynaptic terminal in
A relation between a motor neuron and a muscle that it synapses to via a type III bouton.
BFO_0000051 some (GO_0061177 that BFO_0000051 some (that BFO_0000051 some (GO_0097467 that BFO_0000051 some ( that BFO_0000050 some ?Y))))
RO:0002114
fly_anatomy.ontology
synapsed_via_type_III_bouton_to
synapsed_via_type_III_bouton_to
Expands to: has_part some ('type III terminal button' that has_part some ('pre-synaptic membrane' that part_of some ('synapse' that has_part some ('post-synaptic membrane' that part_of some ?Y))))
synapsed_via_type_III_bouton_to
synapsed_via_type_III_bouton_to
Relation between a muscle and a motor neuron that synapses to it via a type III bouton.
BFO_0000051 some (GO_0042734 that BFO_0000050 some (GO_0045202 that BFO_0000051 some (GO_0097467 that BFO_0000051 some GO_0045211 that BFO_0000050 some ?Y)))
Expands to: has_part some ('presynaptic membrane' that part_of some ('synapse' that has_part some ('type III terminal button' that has_part some 'postsynaptic membrane' that part_of some ?Y)))))
synapsed_by_via_type_III_bouton
Relation between a neuron and an anatomical structure (including cells) that it chemically synapses to.
Chris Mungall
David Osumi-Sutherland
<http://purl.obolibrary.org/obo/BFO_0000051> some (<http://purl.obolibrary.org/obo/GO_0042734> that part_of some (<http://purl.obolibrary.org/obo/GO_0045202> that <http://purl.obolibrary.org/obo/BFO_0000051> some (<http://purl.obolibrary.org/obo/GO_0045211> that <http://purl.obolibrary.org/obo/BFO_0000050> some Y?)))
N1 synapsed_to some N2
Expands to:
N1 SubclassOf (
has_part some (
‘pre-synaptic membrane ; GO:0042734’ that part_of some (
‘synapse ; GO:0045202’ that has_part some (
‘post-synaptic membrane ; GO:0045211’ that part_of some N2))))
synapsed to
A general relation between a neuron and some structure in which it either chemically synapses to some target or in which it receives (chemical) synaptic input.
David Osumi-Sutherland
has synapse in
<http://purl.obolibrary.org/obo/RO_0002131> some (<http://purl.obolibrary.org/obo/GO_0045202> that <http://purl.obolibrary.org/obo/BFO_0000050> some Y?)
has synaptic terminal in
x overlaps y if and only if there exists some z such that x has part z and z part of y
http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)
RO:0002131
fly_anatomy.ontology
overlaps
overlaps
overlaps
overlaps
true
The relation between a neuron projection bundle and a neuron projection that is fasciculated with it.
David Osumi-Sutherland
has fasciculating component
(forall (?x ?y)
(iff
(has_fasciculating_neuron_projection ?x ?y)
(exists (?nps ?npbs)
(and
("neuron projection bundle ; CARO_0001001" ?x)
("neuron projection ; GO0043005" ?y)
("neuron projection segment ; CARO_0001502" ?nps)
("neuron projection bundle segment ; CARO_0001500" ?npbs)
(part_of ?nps ?y)
(part_of ?npbs ?x)
(part_of ?nps ?npbs)
(forall (?npbss)
(if
(and
("neuron projection bundle subsegment ; CARO_0001501" ?npbss)
(part_of ?npbss ?npbs)
)
(overlaps ?nps ?npbss)
))))))
RO:0002132
fly_anatomy.ontology
has_fasciculating_neuron_projection
has_fasciculating_neuron_projection
has fasciculating neuron projection
has_fasciculating_neuron_projection
Relation between a 'neuron projection bundle' and a region in which one or more of its component neuron projections either synapses to targets or receives synaptic input.
T innervates some R
Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.
David Osumi-Sutherland
<http://purl.obolibrary.org/obo/RO_0002132> some (<http://purl.obolibrary.org/obo/GO_0043005> that (<http://purl.obolibrary.org/obo/RO_0002131> some (<http://purl.obolibrary.org/obo/GO_0045202> that <http://purl.obolibrary.org/obo/BFO_0000050> some Y?)))
RO:0002134
fly_anatomy.ontology
innervates
innervates
innervates
innervates
X continuous_with Y if and only if X and Y share a fiat boundary.
David Osumi-Sutherland
connected to
The label for this relation was previously connected to. I relabeled this to "continuous with". The standard notion of connectedness does not imply shared boundaries - e.g. Glasgow connected_to Edinburgh via M8; my patella connected_to my femur (via patellar-femoral joint)
RO:0002150
fly_anatomy.ontology
continuous_with
continuous_with
continuous with
continuous_with
FMA:85972
x partially overlaps y iff there exists some z such that z is part of x and z is part of y, and it is also the case that neither x is part of y or y is part of x
We would like to include disjointness axioms with part_of and has_part, however this is not possible in OWL2 as these are non-simple properties and hence cannot appear in a disjointness axiom
proper overlaps
(forall (?x ?y)
(iff
(proper_overlaps ?x ?y)
(and
(overlaps ?x ?y)
(not (part_of ?x ?y))
(not (part_of ?y ?x)))))
RO:0002151
fly_anatomy.ontology
partially_overlaps
partially_overlaps
partially overlaps
partially_overlaps
a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones).
a is connected to b if and only if a and b are discrete structure, and there exists some connecting structure c, such that c connects a and b
RO:0002170
fly_anatomy.ontology
connected_to
connected_to
connected to
connected_to
https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern
https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern
a is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b.
attached to part of (anatomical structure to anatomical structure)
RO:0002177
fly_anatomy.ontology
attached_to_part_of
attached_to_part_of
attached to part of
attached_to_part_of
true
w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.
For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit.
has component
x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y
Chris Mungall
David Osumi-Sutherland
Melissa Haendel
Terry Meehan
RO:0002202
fly_anatomy.ontology
develops_from
develops_from
This is the transitive form of the develops from relation
develops from
develops_from
inverse of develops from
Chris Mungall
David Osumi-Sutherland
Terry Meehan
RO:0002203
fly_anatomy.ontology
develops_into
develops_into
develops into
develops_into
'neural crest cell' SubClassOf expresses some 'Wnt1 gene'
x expressed in y if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and the transcription of x is part of the gene expression process (iii) x is a mature gene product such as a protein, and x was translated or otherwise processes from a transcript that was transcribed as part of this gene expression process
Chris Mungall
expressed in
Candidate definition: x directly_develops from y if and only if there exists some developmental process (GO:0032502) p such that x and y both participate in p, and x is the output of p and y is the input of p, and a substantial portion of the matter of x comes from y, and the start of x is coincident with or after the end of y.
Chris Mungall
David Osumi-Sutherland
has developmental precursor
FBbt
RO:0002207
fly_anatomy.ontology
develops_directly_from
develops_directly_from
TODO - add child relations from DOS
develops_directly_from
directly develops from
inverse of directly develops from
developmental precursor of
directly develops into
p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q.
Chris Mungall
David Hill
Tanya Berardini
GO
Regulation precludes parthood; the regulatory process may not be within the regulated process.
regulates (processual)
false
RO:0002211
external
regulates
regulates
regulates
regulates
p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q.
Chris Mungall
negatively regulates (process to process)
RO:0002212
external
negatively_regulates
negatively_regulates
negatively regulates
negatively regulates
p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q.
Chris Mungall
positively regulates (process to process)
RO:0002213
external
positively_regulates
positively_regulates
positively regulates
positively regulates
mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)
osteoclast SubClassOf 'capable of' some 'bone resorption'
A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
Chris Mungall
has function realized in
For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".
RO:0002215
fly_anatomy.ontology
capable_of
capable_of
capable of
capable_of
c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
Chris Mungall
has function in
RO:0002216
fly_anatomy.ontology
capable_of_part_of
capable_of_part_of
capable of part of
capable_of_part_of
true
Chris Mungall
Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.
https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1
A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.
temporally related to
x develops from part of y if and only if there exists some z such that x develops from z and z is part of y
Chris Mungall
RO:0002225
fly_anatomy.ontology
develops_from_part_of
develops_from_part_of
develops from part of
develops_from_part_of
p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
Chris Mungall
consumes
has input
Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]
x has developmental contribution from y iff x has some part z such that z develops from y
Chris Mungall
has developmental contribution from
inverse of has developmental contribution from
Chris Mungall
developmentally contributes to
Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p
false
Chris Mungall
In general you should not use this relation to make assertions - use one of the more specific relations below this one
This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from
developmentally preceded by
A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.
c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.
acts upstream of
A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.
c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.
affects
acts upstream of or within
Inverse of developmentally preceded by
Chris Mungall
developmentally succeeded by
'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue
Chris Mungall
part of developmental precursor of
Inverse of 'expressed in'
Chris Mungall
RO:0002292
fly_anatomy.ontology
expresses
expresses
expresses
expresses
p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q.
cjm
holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y
causally upstream of, positive effect
p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q.
cjm
causally upstream of, negative effect
q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.
Because part_of is transitive, inheres in is a sub-relation of characteristic of part of
Chris Mungall
inheres in part of
characteristic of part of
true
A mereological relationship or a topological relationship
Chris Mungall
Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships
mereotopologically related to
A relationship that holds between entities participating in some developmental process (GO:0032502)
Chris Mungall
Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development
developmentally related to
a particular instances of akt-2 enables some instance of protein kinase activity
c enables p iff c is capable of p and c acts to execute p.
Chris Mungall
catalyzes
executes
has
is catalyzing
is executing
This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.
enables
A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.
Chris Mungall
This is a grouping relation that collects relations used for the purpose of connecting structure and function
functionally related to
this relation holds between c and p when c is part of some c', and c' is capable of p.
Chris Mungall
false
part of structure that is capable of
true
holds between two entities when some genome-level process such as gene expression is involved. This includes transcriptional, spliceosomal events. These relations can be used between either macromolecule entities (such as regions of nucleic acid) or between their abstract informational counterparts.
Chris Mungall
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving the genome of an organism
genomically related to
c involved_in p if and only if c enables some process p', and p' is part of p
Chris Mungall
actively involved in
enables part of
involved in
inverse of enables
Chris Mungall
enabled by
inverse of regulates
Chris Mungall
regulated by (processual)
regulated by
inverse of negatively regulates
Chris Mungall
negatively regulated by
inverse of positively regulates
Chris Mungall
positively regulated by
inverse of has input
Chris Mungall
input of
Chris Mungall
http://neurolex.org/wiki/Property:DendriteLocation
has dendrite location
a is attached to b if and only if a and b are discrete objects or object parts, and there are physical connections between a and b such that a force pulling a will move b, or a force pulling b will move a
Chris Mungall
attached to (anatomical structure to anatomical structure)
RO:0002371
fly_anatomy.ontology
attached_to
attached_to
attached to
attached_to
x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).
Chris Mungall
has developmental potential involving
x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y
Chris Mungall
has potential to developmentally contribute to
x has the potential to develop into y iff x develops into y or if x is capable of developing into y
Chris Mungall
has potential to develop into
x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y
Chris Mungall
has potential to directly develop into
inverse of upstream of
Chris Mungall
causally downstream of
Chris Mungall
immediately causally downstream of
p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q.
Chris Mungall
indirectly activates
indirectly positively regulates
p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q.
Chris Mungall
indirectly inhibits
indirectly negatively regulates
relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.
To define causal relations in an activity-flow type network, we make use of 3 primitives:
* Temporal: how do the intervals of the two occurrents relate?
* Is the causal relation regulatory?
* Is the influence positive or negative?
The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.
For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.
For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.
Each of these 3 primitives can be composed to yield a cross-product of different relation types.
Chris Mungall
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
causally related to
relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
https://en.wikipedia.org/wiki/Causality
p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q.
Chris Mungall
causally upstream of
p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q.
Chris Mungall
immediately causally upstream of
p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q.
We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2
Chris Mungall
influences (processual)
affects
causally upstream of or within
inverse of causally upstream of or within
Chris Mungall
causally downstream of or within
c involved in regulation of p if c is involved in some p' and p' regulates some p
Chris Mungall
involved in regulation of
c involved in regulation of p if c is involved in some p' and p' positively regulates some p
Chris Mungall
involved in positive regulation of
c involved in regulation of p if c is involved in some p' and p' negatively regulates some p
Chris Mungall
involved in negative regulation of
c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p
OWL does not allow defining object properties via a Union
Chris Mungall
involved in or reguates
involved in or involved in regulation of
A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
Considering relabeling as 'pairwise interacts with'
This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.
Chris Mungall
Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
in pairwise interaction with
interacts with
http://purl.obolibrary.org/obo/ro/docs/interaction-relations/
http://purl.obolibrary.org/obo/MI_0914
An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.
Chris Mungall
binds
molecularly binds with
molecularly interacts with
http://purl.obolibrary.org/obo/MI_0915
Axiomatization to GO to be added later
Chris Mungall
An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.
phosphorylates
The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.
A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.
Chris Mungall
Vasundra Touré
molecularly controls
directly regulates activity of
The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
Chris Mungall
Vasundra Touré
directly inhibits
molecularly decreases activity of
directly negatively regulates activity of
The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
Chris Mungall
Vasundra Touré
directly activates
molecularly increases activity of
directly positively regulates activity of
Chris Mungall
This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.
helper property (not for use in curation)
'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'
x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.
Chris Mungall
RO:0002473
fly_anatomy.ontology
composed_primarily_of
composed_primarily_of
composed primarily of
composed_primarily_of
Chris Mungall
is kinase activity
See notes for inverse relation
Chris Mungall
RO:0002485
fly_anatomy.ontology
receives_input_from
receives_input_from
receives input from
receives_input_from
This is an exploratory relation. The label is taken from the FMA. It needs aligned with the neuron-specific relations such as has postsynaptic terminal in.
Chris Mungall
sends output to
A relationship between a material entity and a process where the material entity has some causal role that influences the process
causal agent in process
p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q.
Chris Mungall
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
causal relation between processes
Chris Mungall
depends on
The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch
Chris Mungall
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
causal relation between entities
Chris Mungall
causally influenced by (entity-centric)
causally influenced by
Chris Mungall
interaction relation helper property
http://purl.obolibrary.org/obo/ro/docs/interaction-relations/
Chris Mungall
molecular interaction relation helper property
The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size).
Chris Mungall
Vasundra Touré
causally influences (entity-centric)
causally influences
A relation that holds between elements of a musculoskeletal system or its analogs.
Chris Mungall
Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the biomechanical processes.
biomechanically related to
p directly regulates q iff p is immediately causally upstream of q and p regulates q.
Chris Mungall
directly regulates (processual)
directly regulates
gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'
s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p
Chris Mungall
has part structure that is capable of
A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
Chris Mungall
causal relation between material entity and a process
pyrethroid -> growth
Holds between c and p if and only if c is capable of some activity a, and a regulates p.
capable of regulating
Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.
capable of negatively regulating
renin -> arteriolar smooth muscle contraction
Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.
capable of positively regulating
Inverse of 'causal agent in process'
process has causal agent
p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q.
directly positively regulates (process to process)
directly positively regulates
p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q.
directly negatively regulates (process to process)
directly negatively regulates
Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.
cjm
2018-01-25T23:20:13Z
enables subfunction
cjm
2018-01-26T23:49:30Z
acts upstream of or within, positive effect
cjm
2018-01-26T23:49:51Z
acts upstream of or within, negative effect
c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
cjm
2018-01-26T23:53:14Z
acts upstream of, positive effect
c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
cjm
2018-01-26T23:53:22Z
acts upstream of, negative effect
cjm
2018-03-13T23:55:05Z
causally upstream of or within, negative effect
cjm
2018-03-13T23:55:19Z
causally upstream of or within, positive effect
The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B.
Vasundra Touré
regulates activity of
p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q.
pg
2022-09-26T06:07:17Z
indirectly causally upstream of
p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q.
pg
2022-09-26T06:08:01Z
indirectly regulates
A relationship between a neuron and a region, where the neuron has a functionally relevant number of input and/or output synapses in that region.
2020-07-17T09:26:52Z
RO:0013001
has synaptic input or output in
fly_anatomy.ontology
has_synaptic_IO_in
has_synaptic_IO_in
has synaptic IO in region
has_synaptic_IO_in
A relationship between a neuron and a region, where the neuron has a functionally relevant number of input synapses in that region.
2020-07-17T09:42:23Z
RO:0013002
fly_anatomy.ontology
receives_synaptic_input_in_region
receives_synaptic_input_in_region
receives synaptic input in region
receives_synaptic_input_in_region
A relationship between a neuron and a region, where the neuron has a functionally relevant number of output synapses in that region.
2020-07-17T09:45:06Z
RO:0013003
fly_anatomy.ontology
sends_synaptic_output_to_region
sends_synaptic_output_to_region
sends synaptic output to region
sends_synaptic_output_to_region
A relationship between a neuron and a region, where the neuron has a functionally relevant number of input and/or output synapses distributed throughout that region (rather than confined to a subregion).
2020-07-17T09:52:19Z
RO:0013004
fly_anatomy.ontology
has_synaptic_IO_throughout
has_synaptic_IO_throughout
has synaptic IO throughout
has_synaptic_IO_throughout
A relationship between a neuron and a region, where the neuron has a functionally relevant number of input synapses distributed throughout that region (rather than confined to a subregion).
2020-07-17T09:55:36Z
RO:0013005
fly_anatomy.ontology
receives_synaptic_input_throughout
receives_synaptic_input_throughout
receives synaptic input throughout
receives_synaptic_input_throughout
A relationship between a neuron and a region, where the neuron has a functionally relevant number output synapses distributed throughout that region (rather than confined to a subregion).
2020-07-17T09:57:27Z
RO:0013006
fly_anatomy.ontology
sends_synaptic_output_throughout
sends_synaptic_output_throughout
sends synaptic output throughout
sends_synaptic_output_throughout
Relation between a sensory neuron and some structure in which it receives sensory input via a sensory dendrite.
2020-07-20T12:10:09Z
RO:0013007
has sensory dendrite location
has sensory terminal in
has sensory terminal location
fly_anatomy.ontology
has_sensory_dendrite_in
has_sensory_dendrite_in
has sensory dendrite in
has_sensory_dendrite_in
A relationship between an anatomical structure (including cells) and a neuron that has a functionally relevant number of chemical synapses to it.
2021-05-26T08:40:18Z
RO:0013008
fly_anatomy.ontology
receives_synaptic_input_from_neuron
receives_synaptic_input_from_neuron
receives synaptic input from neuron
receives_synaptic_input_from_neuron
A relationship between a neuron and a cell that it has a functionally relevant number of chemical synapses to.
2021-05-26T08:41:07Z
RO:0013009
fly_anatomy.ontology
sends_synaptic_output_to_cell
sends_synaptic_output_to_cell
Not restricting range to 'cell' - object may be a muscle containing a cell targeted by the neuron.
sends synaptic output to cell
sends_synaptic_output_to_cell
A diagnostic testing device utilizes a specimen.
X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y.
https://orcid.org/0000-0001-9625-1899
https://orcid.org/0000-0003-2620-0345
A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input.
See github ticket https://github.com/oborel/obo-relations/issues/497
2021-11-08T12:00:00Z
utilizes
device utilizes material
A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.
regulates characteristic
A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C.
positively regulates characteristic
A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C.
negatively regulates characteristic
X has function Y if and only if X is the bearer of some function that is realized by only Y
fly_anatomy.ontology
has_function_in
This relation has been replaced by capable_of (RO:0002215).
obsolete has_function_in
true
X has function Y if and only if X is the bearer of some function that is realized by only Y
FBC:DOS
X has function in part of Y if and only if x is the bearer of some function that is realized by only part of some Y
fly_anatomy.ontology
has_function_in_part_of
This relation has been replaced by capable_of_part_of (RO:0002215).
obsolete has_function_in_part_of
true
X has function in part of Y if and only if x is the bearer of some function that is realized by only part of some Y
FBC:DOS
Instance level: x releases_neurotransmitter y iff:: for some 'neurotransmitter secretion ; GO:0007269' (ns), x has_function_in ns AND ns has_participant y.
fly_anatomy.ontology
releases_neurotransmitter
Relation between a neuron and the neurotransmitter it releases. Made obsolete as not longer in use and not used outside fbbt. Please use a capable_of relationship to some subclass of GO:0007269
obsolete releases_neurotransmitter
true
Instance level: x releases_neurotransmitter y iff:: for some 'neurotransmitter secretion ; GO:0007269' (ns), x has_function_in ns AND ns has_participant y.
FBC:DOS
Instance level: x secretes_hormone y iff:: for some 'hormone secretion ; GO:0046879' (hs), x has_function_in hs AND hs has_participant y.
fly_anatomy.ontology
secretes_hormone
Relation between a secretory cell or gland and the hormone it secretes. Made obsolete as not longer in use and not used outside fbbt. Please use a capable_of relationships to some relevant GO term for hormone secretion. If GO doesn't have a term for secretion of the hormone in querstion, please request one.
obsolete secretes_hormone
true
Instance level: x secretes_hormone y iff:: for some 'hormone secretion ; GO:0046879' (hs), x has_function_in hs AND hs has_participant y.
FBC:DOS
AS-C T8
AS-C T8ase
AS-T8
ASC
Ase
Asense
CG3258
EG:165H7.2
T1
T1A
T1a
T8
as-T8
ascT8
asense
bHLHc28
sc/T8
ase
2.7
Art
Ba
BcDNA:LP01770
Brista
CG3629
DLL
Distal-less
Distall-less
Distalless
Distallless
E(Arp)
En(Arp)
Enhancer of Arp
distal-less
distalless
dll
l(2)01092
l(2)387
Dll
BAM
Bag of Marbles
Bag of marbles
Bag-of-Marbles
Bag-of-marbles
Bam
Bam-C
BamC
BamF
CG10422
alpha
bag of marble
bag of marbles
bag-of-marbles
fs(3)neo61
ham
transcript alpha
bam
BI
CG3578
Dm-OMB
Dm-omb
OMB
Omb
Optimotor-blind
Optomotor blind
Optomotor-blind
Qd
Quadroon
T3
TBX2
bifid
dm-omb
l(1)bi
l(1)omb
lethal(l)optomotor-blind
omb
opomoter-blind
optimotor blind
optomer-blind
optomoter blind
optomoter-blind
optomotor blind
optomotor-blind
optomotor-blind gene
optomotorblind
bi
BMPER
CG15671
CT35855
CV2
Crossveinless 2
Cv 2
Cv-2
Cv2
crossveinless 2
crossveinless-2
cv 2
cv2
cv-2
0495/20
0926/11
1053/14
1119/09
1304/03
1423/11
1440/11
1485/04
C1
CG3619
CT12133
Complementation group 1
D
D1
DL
Delta
Deltal
E(ls)2
EC3-5
Overflow
anon-WO0118547.269
delta
delta D1
dl
dmDelta
l(3)05151
l(3)92Ab
l(3)j8C3
Dl
BMP
Bmp
CG9885
DPP
DPP-C
Decapentaplegic
Decapentaplegic/Bone Morphogenetic Protein
Dm-DPP
DmDPP
Dpp
Dpp/TGFbeta
Haplo-insufficient
Hin-d
M(2)23AB
M(2)LS1
TGF-b
TGF-beta
TGFbeta
Tegula
Tg
Tgfbeta
blink
blk
bone morphogenetic protein
bone morphogenic protein
decapentaplegic
heldout
ho
l(2)10638
l(2)22Fa
l(2)k17036
shortvein
shv
dpp
BcDNA:RH46857
CCK
CG18090
DSK
DSK I
DSK II
DSK-0
DSK-1
DSK-2
DSK-I
Drm-SK
Drm-SK-0
Drm-SK-1
Drm-SK-2
DrmSK-I
DrmSK-II
Drosophila sulfakinin
Drososulfakinin
Drosulfakinin
Drosulfakinin 1
Drosulfakinin 2
SK
SK-0
Sulfakinin
cholecystokinin-like
drosulfakinin
drosulfakinins
dsk
sulfakinin
sulfakinin-0
Dsk
CG11094
DSX
DSXF
DSXM
Dmdsx
Doublesex
Dsx
Hermaphrodite
Hr
double sex
doublesex
dsxF
dsxM
intersex-62c
ix-62c
dsx
CG1765
CG8347
DEcR
Dhr23
DmEcR
ECR
ECR-C
EcR-A
EcR-B
EcR-B1
EcR1b
EcRA
EcRB
EcRB-1
EcRB1
EcRC
EcdR
Ecdyson Receptor 1b
Ecdysone Receptor
Ecdysone receptor
Ecdysone-R
Ecr
Ecr1B
EcrB1
NR1H1
USP
Usp
anon-WO0229075.1
dECR
dmEcR
ecdysone receptor
ecdysone receptor complex
ecdysone-Receptor
ecdysteroid receptor
ecdysterone receptor
ecr
lie
long island expressway
male sterile(2)42A
ms(2)06410
ms(2)42A
snaggletooth
snt
EcR
CG5400
DMEHAB
Drm-EH
EH
EHAB
Eclosion hormone
eclosion hormone
eh
Eh
153867_at
Apa
Apigmented abdomen
CG9015
EN
ENGRAILED
En
EnR
Eng
Engr
Engrailed
Engrailed/Invected
Erased
Es
Invected
V
en1
engrailed
spa2
sparse SGPs 2
spermatheca
spt
transcript group V
vasodilator-stimulated phosphoprotein
en
10.5
10.9
14.10
20.35
CG2328
Complementation group F
Dm-eve
E(eve)
EVE
EVEN-SKIPPED
Eve
Even
Even Skipped
Even skipped
Even-Skipped
Even-skipped
Evenskipped
F
Group V
Group VI
V
VI
dm-eve
eve PRE/TRE element
eve2
even
even skipped
even-skiped
even-skipped
evenskip
evenskipped
l(2)46CFg
l(2)46CFh
l(2)46CFj
l(2)46CFp
l(2)46Ce
l(2)46Cg
lethal(2)46Ce
eve
CG5803
FAS III
FAS3
FASIII
Fas
Fas III
Fas-3
Fas-III
FasIII
FascIII
Fascicilin III
Fasciclin
Fasciclin 3
Fasciclin III
Fasciclin-3
Fasciclin-III
Fasciclin3
FasciclinIII
Fascilin III
Fasiciclin III
Fasicilin III
Fasiclin III
FsciclinIII
fas III
fas-III
fas3
fasIII
fascIII
fasciclin 3
fasciclin III
fasciclin3
fasciclinIII
fascilin III
fasiclin III
Fas3
CG10034
DM13
Dmaf
PL3
TJ
Tj
Traffic Jam
Traffic jam
Traffic-Jam
Traffic-jam
female sterile(2)eo2
fs(2)eo-B
fs(2)eo2
fs(2)eoPL3
maf-L
maf1
traffic jam
tj
1323/07
1422/04
CG17117
Dm-HTH
Gene II
HTH
Homothorax
Hth
MEIS1
Meis1
P53
anon-EST:Liang-2.13
clone 2.13
dorsotonals
dtl
homothorax
hth1
hth2
l(3)05745
l(3)86Ca
hth
CG15009
CT34862
Ecdysone-inducible gene L2
GH28
IMP-L2
IMPL2
Imaginal morphogenesis protein-Late 2
Imaginal morphogenesis protein-late 2
Imp-12
Imp-L2
ImpL-2
Impl2
ecdysone-inducible gene L2
imaginal morphogenesis protein-late 2
imp-L2
impL2
neural and ectodermal development factor
ImpL2
4B7
BG:DS07851.7
CG3758
D.m.Escargot
Escargot
Esg
Esgargot
Fusion-1
br43
dgl
double glazed
escargot
esgargot
fleabag
flg
l(2)07082
l(2)35Ce
l(2)4B7
l(2)br43
l(2)esg
l35Ce
shof
shut off
wiz
wizard
esg
BG:DS00004.9
CG1264
Dm lab
DmLab
Dmlab
EfR9
F121
F24
F90
F90-2
LAB
Lab
Labial
l(3)01241
l(3)84Ac
labial
lb
lab
C23
CG11538
CG6806
DmeLSP2
LHP
LSP 2
LSP-2
LSP2
Larval serum protein 2
Larval serum protein-2
Lsp-2
Protein-1
Pt-1
larval serum protein 2
larval-hemolymph-protein
lsp2
Lsp2
CG1689
LZ
Lozenge
Lz
amx
fs(1)A1569
fs(1)M69
lozenge
spe
spectacled
lz
BG:DS02740.1
CG4965
Cdc25
TWINE
Twe
Twine
cdc25
l(2)35Fh
mat(2)syn-A
mat(2)synHB5
mat(2)syn[HB5]
twine
twn
twe
CG3851
ODD
ODD-SKIPPED
Odd
Odd Skipped
Odd skipped
Odd-Skipped
Odd-skipped
l(2)01863
odd paired
odd skipped
odd-skipped
oddskipped
ods
odd
CG2647
Clk
Clock
EG:155E2.4
PER
PERIOD
Per
Per-2
Period
clk-6
clock-6
dPER
dPer
dmper
dper
dperiod
mel_per
period
period clock protein
per
CG10888
DMELRH3
Dm Rh3
RH3
Rh
Rhodopsin
Rhodopsin 3
Rhodopsin3
rh3
rhodopsin
Rh3
CG9668
DMELRH4
Dm Rh4
RH4
Rh
Rhodopsin
Rhodopsin 4
Rhodopsin4
rh4
rhodopsin
rhodopsin 4
Rh4
BG:DS00180.13
CG8930
CT25644
DLGR-2
DLGR2
DLgr2
Dlgr2
Glycoprotein hormone receptor II
LGR2
Lgr2
Rickets
Rk
dLGR2
dlgr2
dlgr2/rk
glycoprotein hormone receptor II
glycoprotein-hormone-receptor-II
leucine-rich repeat-containing G protein-coupled receptor 2
lgr2
rickets
rk/CG8930
rk
CG9224
Chordin
Dm sog
SOG
Short Gastrulation
Short gastrulation
Sog
l(1)G0160
l(1)G0395
l(1)G0479
short gastrulation
short of gastrulation
short-gastrulation
sog
A-box-binding factor
A7.1
ABF
Abf
CG3992
DmGATAb
GATA
GATAb
SERPENT
SRP
Serpent
Srp
abf
dGATAb
l(3)01549
l(3)89B2
l(3)neo45
serpent
serpentD
spt
srpD
srp
0005/12
0042/01
0106/18
0114/20
0351/01
0598/01
0861/07
BcDNA:GH08189
CG11502
CG18158
NR2F3
SEVEN-UP
SVP
SVP-1
SVP1
Seven Up
Seven up
Seven-Up
Seven-up
Sevenup
Svp
ck16
complementation group 7
don
down-and-out
l(3)07842
l(3)87Bd
l(3)ck16
l(3)j2E2
l(3)rA028
l(3)rL069
seven up
seven-up
sevenup
svp
CG15779
Dmel5a
GR5A
GR5a
GRLU.7
Gr5
Gr5A1
GrLU7
Gustatory receptor 5a
Gustatory receptor LU.7
LU.7
Tre
Trehalose sensitivity
Trehalose-sensitivity
gustatory receptor 5a
han
tre
trehalose receptor
Gr5a
CG1374
T shirt
T-shirt
TSH
Teashirt
Tsh
ae
ae[l]
aeroplane
l(2)04319
l(2)B4-2-12
teashirt
tsh
CG7171
Dm UO
OU
UO
UOX
URO
Uo
Urate oxidase
anon-WO0140519.210
urate oxidase
uro
Uro
CG3830
VG
Vestgial
Vestigial
Vg
vestigal
vestigial
vg21
vg
CG12154
OC
Oc
Ocelliless
Orthodenticle
Otd
Otx
l(1)7Ff
l(1)8Ac
oc2
ocelliless
ort
orthodentical
orthodenticle
otd
uvi
uvi-insensitive
oc
BcDNA:GH10590
CG11387
CT
CUT
Ct
Cut
cut
kf
kinked-femur
l(1)7Ba
l(1)7Bb
l(1)VE614
ct
CG7936
MEX
Midgut expression 1
midgut expression 1
mex1
ADKH
AKH
AKH1
Adipokinetic Hormone
Adipokinetic hormone
Adipokinetic hormone-like
CG1171
Drm-AKH
DrmAKH
Hrth
Hypertrehaloseaemic-hormone
adipo- kinetic hormone
adipokinetic hormone
akh
dAKH
dAkh
Akh
0244/09
0320/10
0441/16
0451/09
0563/18
0585/13
0664/07
0671/02
0763/13
0989/01
1135/07
1135/09
1167/13
1316/02
671/2
BcDNA:HL08040
CG17228
DMPROSPER
DROPROSA
PROS
PROS-1
PROS-2
Pro
Pros
Prosp
Prospero
Voila
a la voile et a la vapeur
anon-WO0140519.15
l(3)10419
l(3)j12C8
l(3)j6E2
l(3)rH013
l(3)rI160
l(3)rJ806
l(3)rK137
l(3)rK204
l(3)rL433
l(3)rO534
pro
prosp
prospero
voila
pros
CG1322
ZFH-1
ZFH1
ZFh1
Zfh-1
Zfh1
Zfh1a
Zinc Finger Homeodomain 1
Zinc-finger homeodomain protein 1
Zn finger homeodomain 1
Zn homeodomain 1
l(3)00865
zfh-1
zfl-1
zhf1
zinc finger homeodomain 1
zinc finger homeodomain protein-1
zinc finger homeodomain-1
zinc-finger homeobox gene
zinc-finger homeodomain protein 1
zinc-finger homeodomain1
zfh1
CG7672
E(sina)5
Enhancer of seven in absentia 5
GLASS
Gl
Gla
Glass
SS3-2
SY3-3
Suppressor of GMR-sina 3-2
gla
glass
no-ocelli--narrow-eyes
none
rauhig
rh
gl
CG4637
Dmhh
HH
Hedgehog
Hedghog
Hg
Hh
Mir
Mirabile
Moonrat
Mrt
PKC
anon-WO0134654.19
anon-WO0182946.19
atypical
bar
bar-3
bar-on-3
bar3
hedgehog
hg
l(3)hh
l(3)neo56
l(3)neo57
hh
BTB-VI
BTB-protein-VI
BtbVI
CG14307
CG7688
CG7689
CG7690
CT22773
Dmfru
FRU
FRU-PI
Fru
FruM
Fruitless
cg7688
cg7689
fru-satori
fruC
fruitless
fruity
fry
fty
ms(3)06411
sat
satori
fru
0483/09
0716/08
0899/14
0953/08
1002/10
1034/02
1050/13
1110/04
1111/10
1330/08
1479/04
CG7771
S8
SIM
Sim
Single minded
Single-minded
Singled-minded
bHLHe16
l(3)87Ea
l(3)E320
l(3)RD
l(3)S8
l(3)s8
schm
schmal
shm
single minded
single-minded
singleminded
sim
CG5993
OS
Os
Outstretched
UPD
UPD1
Unpaired
Unpaired 1
Unpaired/Out-stretched
Unpaireds
Upd
Upd1
l(1)YC43
l(1)YM55
od
odsy
os
outstretched
outstretched small eye
outstretched-smalleye
sis-C
sis-c
sisC
sisterless c
small-eye
sy
unp
unpaired
unpaired 1
unpaired1
upa
upd
upd homolog
upd1
C/EBP
CCAAT/enhancer binding protein
CG4354
DC/EBP
DM8
Dm-c/EBP
DmC/EBP
SLBO
Slbo
Slow Border Cells
Slow border cells
fs(2)7
fs(2)8
fs(2)ry7
fs(2)ry8
slobo
slow border cells
slbo
BG:DS02780.3
CG4952
DAC
DACHSHUND
Dac
Dac2-3
Dach
Dachshund
Dachsund
Dm-DAC
dach
dachshund
dachsund
dacshund
daschund
l(2)36Ae
l(2)rK364
spinosus
spn
dac
CG7503
CON
CT1840
Connectin
Ubx-t35
anon-64C
con
conn
connectin
transcript-35
Con
44C
CG8704
DPN
Dead-pan
Deadpan
Dpn
anon-EST:fe1B12
anon-fast-evolving-1B12
bHLHe50
deadpan
dpn
CG8938
DmGST-2
DmGST2
DmGSTS1
DmGSTS1-1
DmGst-2
DmGstS1-1
Est2
GST
GST S1
GST-2
GST-S1
GST2
GSTII
GSTS1
GSTs
Glutathione S transferase 2
Glutathione S transferase S1
Glutathione S-transferase
Glutathione S-transferase 2
Glutathione S-transferase S1
Glutathione-S-Transferase 2
Gst2
GstS1-1
S1
dHPGDS
glutathione S-transferase-2
glutathione S-transferase-S1
glutathione transferase-related protein
glutathione-S-transferase
glutathione-S-transferase (GST) S1
gst
gstD2
gsts1
l(2)04227
l(2)k08805
lincRNA.330
n(2)06253
GstS1
CG10119
DmC
G intermediate filament
G-IF
LAMC
Lamin C
Lamin-C
LaminC
lamC
lamin
lamin A
lamin C
lamin DmC
laminC
pG-IF
LamC
ATO
At
Ato
Atonal
CG7508
ato1
ato[Dm]
atona
atonal
bHLHa10
ato
CG4698
DWnt-4
DWnt4
Dm DWnt4
Dwnt-4
Dwnt4
WNT4
Wnt
Wnt oncogene analog 4
Wnt-4
anon-EST:Liang-2.4
clone 2.4
dWnt4
wnt-4
wnt4
Wnt4
CG6440
DMS
Dm-MS
Dms
Drm-MS
Drm-myosuppressin
Drome-MS
Dromyosuppressin
FLRFa
MEMS
MS
Myosuppressin
Nems
Neomyosuppressin
TDVDHVFLRFamide
cg6440
dms
dromyosuppressin
myosuppressin
Ms
3702
AbRK2
Antibody RK2
CG31240
CG8045(CT24072)
CT24072
REPO
RK2
Repo
Reversed Polarity
Reversed polarity
l(3)03702
reverse polarity
reversed polarity
rk2
repo
Bra
Brachyenteron
Brachyury
Byn
CG7260
D-TRA
D-Trg
DTrg
Dm-BYN
T related antigen
T-related gene
Tra
Trg
apro
aproctous
brachyenteron
brachyury
byn/apro
dm-Trg
trg
byn
CG8348
CRF
CRF-like diuretic hormone
CRF-like peptide
DH
DH 44
DH-44
DH44
DH[[44]]
Dh
Diuretic hormone
Diuretic hormone 44
Drm-DH
Drome-DH[[44]]
diuretic hormone
diuretic hormone 44
drome-DH44
Dh44
CG13687
PTTH
Prothoracicotropic hormone
phm
prothoracicotopic hormone
prothoracicotropic hormone
ptth
Ptth
CG12296
KLU
Klu
Klumpfuss
P09036
klumpfuss
klumphuss
l(3)09036
l(3)10052
klu
CG3302
COR
CORZ
CRZ
Cora
Corazonin
Dm-Crz
Drm-COR
cor
corazonin
crz
preprocorazonin
Crz
CG5279
DMELRH5
Dm Rh5
RH5
Rh
Rhodopsin
Rhodopsin 5
Rhodopsin5
rh5
rhodopsin
rhodopsin 5
rhodopsin-5
Rh5
CG4609
FAX
Failed Axonal Connections
Failed axon connections
Fax
anon-EST:Liang-1.34
anon-WO0172774.62
anon-WO0172774.63
anon-WO0172774.65
anon-WO0172774.66
anon-WO0172774.67
anon-WO0172774.68
anon-WO0172774.69
clone 1.34
fac
failed axon connections
fax
CG12245
GCM
GCM1
GCMa
Gcm
N7-4
glia cells missing
glial cell deficient
glial cell missing
glial cells missing
glial cells-missing
glide
glide glide2
glide/gcm
l(2)N7-4
ucc
upper class chordotonals
gcm
CG10601
DH1
De1
De3
Group F
IRO-C
Iro
Iro-C
IroC
Iroquis complex
Iroquois
MIRR
Mirr
Mirror
Mrr
Sai
Sail
caupalican
cre
crep
crepuscule
group F
iro
iro-C
iroquois
l(3)69Ca
l(3)69Da
l(3)6D1
l(3)A5-3-42
mir
mirror
mrr
mirr
Bruchpilot
CG3234
Ritsu
TIM
TIMELESS
Tim
Tim-1
Timeless
dTIM
dTim
dtim
dtimeless
mel_tim
rit
ritsu
s-tim
tim1
timeless
timeless1
tim
CG10758
CG17348
DRL
Derailed
Drl
derailed
lin
linotte
lio
lio/drl
lionette
drl
ALLS
AS
ASA
AST
AST-1
AST-3
AST-4
AST-A
Allatostatin
Allatostatin A
Allatostatin A1
Allatostatin A2
Allatostatin A3
Allatostatin A4
Allatostatin Diploptera-type
Ast
Ast-A
AstA-1
AstA-2
AstA-3
AstA-4
AstA1
AstA2
AstA4
BcDNA:RE16553
CG13633
DAP
DAP-A
DST-1A
DST-2A
DST-3A
DST-4A
Drm-AST-1
Drm-AST-2
Drm-AST-3
Drm-AST-4
Drm-AST-A
Drostatin-A1
Drostatin-A2
Drostatin-A3
Drostatin-A4
FGLa-type allatostatin
allatostatin
allatostatin A
allatostatin A-1
allatostatin-A
allatostatin-A-like
allatostatin-A4
ast
drostatin-A1
drostatin-A2
drostatin-A3
drostatin-A4
AstA
CG5192
DMELRH6
Dm Rh6
R8
R8 rhodopsin
RH6
Rh
Rhodopsin
Rhodopsin 6
Rhodopsin6
rh6
rhodopsin
rhodopsin 6
rhodopsin-6
Rh6
BG:DS06238.1
CG3478
Drifter
PPK
PPK1
Pickpocket
Pickpocket1
Ppk
dfr
dmdNaC1
dmdNaCl
mdNaC1
multidendritic neurons sodium channel 1
pickpocket
pickpocket 1
pickpocket1
pkt
ppk1
ppk
0837/10
C
CG18485
CG31317
CG3375
DOF
Dof
Dof/stumps/heartbroken
Downstream of FGF
Downstream of FGF receptor
Downstream of FGFR
Downstream of FGFR/Heartbroken/Stumps
Downstream-of-FGFR
Hbr
Hbr/Dof
Heartbroken
P1740
Stumps
anon-EST:CL47
anon-estC
dof
dof/hbr
dof/hbr/sms
dof1
downstream of FGF receptor
downstream of FGFR
downstream-of-FGF receptor
gene C
hbr
heartbroken
heartbroken/dof
i21
i28
l(3)09904
l(3)S083710
sms
stumps
stumps/dof
stumps
1210
CG1201
CG1210
DSTPK61
Dstpk61
PDK
PDK-1
PDK1
PDK1/Pk61C
PK61C
Pdpk1
Phosphoinositide dependent kinase 1
Phosphoinositide-dependent kinase 1
Pk61C
Pk61C/PDK1
Pk61c/PDK1
Protein kinase 61C
dPDK
dPDK-1
dPDK1
dPdk1
dSTPK61
pdk1
pdpk1
phosphoinositide-dependent kinase 1
pk61c
protein kinase 61C
serine/threonine protein kinase
Pdk1
CG8667
DIMM
DIMMED
Dimm
Dimmed
Mist 1-related
Mistr
bHLHa16
c929
dim
dimmed
dimm
BcDNA:RH08487
CG6496
Drm-PDF
Drm-PDH
Drm-pdf
PAP
PDF
PDF C7
PDF-associated peptide
PDF-precursor PDF-associated peptide
PDH
PIGMENT DISPERSING FACTOR
PIGMENT-DISPERSING FACTOR
Pigment Dispersing Factor
Pigment dispersing factor
Pigment-Dispersing Factor
Pigment-dispersing factor
Pigment-dispersing hormone
Pigment-dispersing hormone-like peptide
anon-WO0140519.261
anon-WO0140519.3
cPDH
pdf
pigment dispersing factor
pigment dispersing hormone
pigment dispersion factor
pigment-dispersing factor
pigment-dispersing hormone
Pdf
2F.1
2a
AN4
CG3206
DOR2F.1
DOR62
Dor62
EG:30B8.7
Odorant receptor 2a
Odorant receptor 62
Olfactory receptor 2F.1
Or2F.1
Or62
dor62
or2a
Or2a
CG18455
D-Six3
Dsix3
OPTIX
Optix
Six3
anon-WO0153538.79
opt
optix
opx
six3
Optix
BAB
BAB2
BTB-II
BTB-protein-II
Bab2
Bric a brac
Bric a brac II
Bric-a-brac 2
BtbII
CG13911
CG9102
bab
bab-II
bric a brac
bric a brac 2
bric a brac II
bric-a-brac
bric-a-brac 2
bric-a-brac-2
bric-a-brac2
bab2
AKH R
AKH receptor
AKH-R
AKHR
Adipokinetic Hormone Receptor
Adipokinetic hormone receptor
Akh-R
AkhR/GRHR
Akhr
Akhr/GRHR
BEST:GH19447
CG11325
DAKHR
DAKHR-1
DGRHR
Drm-AKH receptor-1
GRHR
GRHR/CG11325
GnRHR
Gonadotropin-releasing hormone receptor
adipokinetic hormone receptor
akhR
akhr
gonadotrophin-releasing hormone receptor
gonadotropin-releasing hormone receptor
hormone receptor
AkhR
Blue-light receptor
CG3772
CRY
CRYPTOCHROME
Cry
Crypochrome
Cryptochrome
DCry
Dm-CRY1
DmCRY
DmCRY1
DmCry
DmCry1
Dmcry
anon-WO0140519.17
anon-WO0140519.19
anon-WO0140519.20
anon-WO0172774.15
cry1
cryb
crybaby
cryptochrome
dCRY
dCry
dcry
cry
BEST:CK01577
CG12789
CK01577
SANTA-MARIA
Santa Maria
santa maria
scavenger receptor acting in neural tissue and majority of rhodopsin is absent
santa-maria
CG3346
PON
Partner Of Numb
Partner of Numb
Partner of numb
Pon
partner of numb
pon
59D.1
59a
AN6
CG9820
DOR46
DOR59D.1
OR59a
Odorant receptor 59a
Olfactory receptor 59D.1
Or46
Or59D.1
dor46
Or59a
47E.2
47b
CG13206
DOR25
DOR47E.2
DmOr47b
OR 47b
OR47b
Odorant receptor 47b
Olfactory receptor 47E.2
Or47E.2
or47b
Or47b
47E.1
47a
AN10
CG13225
DOR24
DOR47E.1
OR47a
Odorant receptor 47a
Olfactory receptor 47E.1
Or24
Or47E.1
dor24
or47a
Or47a
46F.1
46a
46b
AN8
AN9
CG17848
CG17849
CG33478
DOR19
DOR20
DOR46F.1
DOR46F.2
DmelOR46a
OR46a
Odorant receptor 46a
Odorant receptor 46b
Olfactory receptor 46F.1
Olfactory receptor 46F.2
Or19
Or46B
Or46F.1
Or46F.2
Or46aA
Or46aB
Or46aa
Or46b
dor19
Or46a
43B.1
43B1
43a
AN14
CG1854
DOR43B.1
DOR43a
DOR87
Dor87
OR43a
Odorant receptor 43a
Odorant receptor 87
Olfactory receptor 43B.1
Or
Or43A
Or43B.1
Or87
dor87
or43a
Or43a
33B.3
33c
AN2
CG5006
DOR33B.3
DOR71
Odorant receptor 33c
Olfactory receptor 33B.3
Or33B.3
Or71
dor71
Or33c
33B.2
33b
AN1
CG16961
DOR33B.2
DOR72
Odorant receptor 33b
Olfactory receptor 33B.2
Or33B.2
Or72
dor72
Or33b
33B.1
33a
AN3
CG16960
DOR33B.1
DOR73
Odorant receptor 33a
Olfactory receptor 33B.1
Or33B.1
Or73
dor73
Or33a
25A.1/43
43b
AN7
CG17853
DOR25A.1
DOR81
OR43b
Odorant receptor 43b
Olfactory receptor 25A.1
Or25A.1
Or43b
24D.1
24a
CG11767
DOR24D.1
DOR48
Odorant receptor 24a
Olfactory receptor 24D.1
Or24D.1
Or24a
23A.1
23a
AN5
CG9880
DOR23A.1
DOR64
DOR64, AN5
Dor64
Odorant receptor 23a
Odorant receptor 64
Olfactory receptor 23A.1
Or23A.1
Or64
dor64
or23a
Or23a
22C.1
22c
CG15377
DOR16
DOR22C.1
Odorant receptor 22c
Olfactory receptor 22C.1
Or22C.1
Or22c
22A.2
22b
AN12
CG4231
DOR22A.2
DOR22b
DOR67
Dmel Or22b
Dor67
OR22b
Odorant receptor 22b
Odorant receptor 67
Olfactory receptor 22A.2
Or22
Or22A.2
Or22a/b
Or67
dOr22b
dor67
or22b
Or22b
22A.1
22a
AN11
CG12193
DOR22A.1
DOR22a
DOR53
DmOr22a
Dmel Or22a
Dmel22a
Dor53
OR22a
Odorant receptor 22a
Odorant receptor 53
Olfactory receptor 22A.1
Or22
Or22A.1
Or22a/b
Or53
dOr22a
dor53
Or22a
85B.1
85e
CG9700
CR9700
DOR104
DOR85e
Dor104
OR55
OR85e
Odorant receptor 104
Odorant receptor 85e
Or104
dor104
Or85e
CG10342
Dm-NPF
DmNPF
Drm-NPF
NP-PP
NPF-A1
NPF-A2
NPF/NPY
NPF89D3
NPY-like neuropeptide F
Neuropeptide F
Neuropeptide F 1
Npf
dNPF
dnpf
long neuropeptide F
neuropeptide F
neuropeptide-F
npf
sNPF
NPF
CG16785
DFz3
Dfrizzled-3
Dfz3
Dm Fz3
EG:34F3.6
Frizzled 3
Fz3
dFrizzled3
dFz3
dfz3
frizzled 3
frizzled3
fz3
CG7758
l(3)00217
l(3)78Cb
pumpless
ppl
CG6371
Drm-MT2
Drm-PK-2
HUG
HUGIN
HUGgamma
Hug-PK
Hug-gamma
Hugin
Hugin PK
Hugin-PK-2
Hugin-gamma
Hugin-pyrokinin
PK-2
Pyrokinin
SVPFKPRLamide
hug
hug gamma
hug-1
hug-2
hug-PK
hug-gamma
hugg
huggamma
hugin
hugin gamma
huginPK
pyrokinin
pyrokinin-2
pyrokinin/PBAN-like
Hug
CG13480
DLK
Drm-KIN
Drosokinin
Kinin
LCK
LK
Leucokinin
Leucokinin-1
Leucokinin-like
Leuk
Leukokinin
drosokinin
kinin
leuc
leucokinin
leucokinin precursor
leukokinin
leukokinin neuropeptide
lk
myokinin-like
pp
Lk
CG31770
Gustav
H2
Hemes
Hemese
he
hem
hemes
hemese
He
BG:DS09218.5
CG17330
DmJHAMT
JAHMT
JHAMT
JHamt
Jhamt
Juvenile Hormone Acid O-Methyl Transferase
Juvenile Hormone Acid O-Methyltransferase
Juvenile hormone acid O-methyltransferase
Juvenile hormone acid methyl transferase
juvenile hormone acid methyltransferase
jhamt
35a
36E.1
BACR44L22.5
BG:BACR44L22.5
CG17868
DOR91
OR35a
Odorant receptor 35a
Or35a
49D.1
49b
AN13
CG17584
DOR105
DmOr49b
OR49b
Odorant receptor 49b
Or-49b
Or49b
1A.1
1a
CG17885
DOR68
OR1a
Odorant receptor 1a
Or1a
CG12731
CG16752
DrmSPR
SP receptor
Sex Peptide Receptor
Sex peptide Receptor
Sex peptide receptor
Spr
sex peptide receptor
spr
SPR
7D.1
7a
CG10759
DOR30
DmOR7a
DmelOr7a
OR7a
Odorant receptor 7a
Or7A
Or7a
9E.1
9a
CG15302
DOR95
DmOr9a
OR9a
Odorant receptor 9a
or9a
Or9a
10B.1
10a
CG17867
DOR92
Gr10a
OR10a
Odorant receptor 10a
odorant receptor 10a
Or10a
145098_at
CG9057
DmPLIN2
LSD
LSD-2
LSD2
LSP-2
Lipid Storage Droplet 2 Gene
Lipid Storage Droplet protein 2
Lipid storage droplet 2
Lipid storage droplet-2
Lipid-storage Droplet-2
Lsd2
PLIN2
Perilipin2
Plin2
dPlin2
dmPLIN2
lipid storage droplet 2
lipid storage droplet-2
lsd-2
lsd2
perilipin
perilipin-2
plin2
Lsd-2
13F.1
13a
CG12697
DOR38
OR13a
Odorant receptor 13a
dOr13a
or13a
Or13a
CG4805
PPK-28
PPK28
Ppk28
pickpocket 28
ppk-28
ppk28
CG8527
PPK-23
PPK23
Ppk23
pickpocket 23
ppk-23
ppk23
CG15064
Holes in Muscles
Holes in muscle
him
holes-in-muscle
Him
21a
CG2657
CT8983
DmelIR21a
IR21a
Ionotropic receptor 21a
ionotropic receptor 21a
ir21a
Ir21a
CG4971
D-Wnt-10
DWnt-10
DWnt10
Dm DWnt10
Dwnt-10
Dwnt10
Wnt oncogene analog 10
wnt10
Wnt10
CG13094
Calcitonin
Calcitonin-like diuretic hormone (31 residues)
DH 31
DH-II
DH31
DH[31]
DH[[31]
DH[[31]]
Dh[[31]]
Diuretic Hormone 31
Diuretic hormone 31
Drm-DH[[31]]
Drome-DH[[31]]
anon-EST:Posey114
anon-WO02059370.45
dh31
diuretic Hormone 31
diuretic hormone
diuretic hormone 31
drome-DH31
Dh31
30A.1
30a
CG13106
DOR56
OR30a
Odorant receptor 30a
Or30a
ASC
AST-C
ASTC
Allatostatin 2
Allatostatin C
Allatostatin Manduca-type
Ast-C
Ast2
BEST:GH06087
BcDNA:RH36507
CG14919
CG149199
DAP-C
Drm-AST C
Drm-AST-C
Drostatin-C
FLT
Flt
M-ASH
allatostatin C
allatostatin-C
ast2
drostatin-C
flatline
flt
gh06087
AstC
Atilla
CG6579
L1
atilla
atilla
38B.2
CG13968
Drm-sNPF
Drm-sNPF-1
Drm-sNPF-2
Drm-sNPF-3
Drm-sNPF-4
Drm-sNPF-AP1
LRLRFamide
LRLRFamides
Neuropeptide F (short)
SMALL NEUROPEPTIDE F
SNPF
Short NPF
Short Neuropeptide F
Short neuropeptide F
lrlrfa
precursor of short neuropeptide F
s-NPF
sNPF precursor
sNPF-1
sNPF-1[4-11]
sNPF-2
sNPF-2[12-19]
sNPF-2s
sNPF-3
sNPF-4
sNPF1
sNPF1[1-11]
sNPF1[4-11
sNPF2[12-19]
sNPF3
short NPF
short neuropeptide F
short neuropeptide F precursor
short neuropeptide F-1
short neuropeptide F1
small neuropeptide F
small neuropeptide F-1
small neuropeptide-F
snpf
sNPF
41E.2
42a
CG17250
DOR117
OR42a
Odorant receptor 42a
Or42A
Or42a
41E.1
42b
CG12754
DOR118
OR42b
Odorant receptor 42b
Or42
Or42b
CG8577
CT8705
PGRP SC
PGRP-SC
PGRP-SC1
PGRP-SC1B
Peptidoglycan recognition protein SC1b
Peptidoglycan-recognition protein-SC1b precursor
SC1B
pgrp-sc
pgrp-sc1
PGRP-SC1b
CG8193
DmePPO2
PO45
PPO
Phenoloxidase A3
ProPO45
Prophenoloxidase 2
phenoloxidase subunit A3
ppo2
proPO45
proPOA(3)
proPo-A3
prophenoloxidase 45
PPO2
45C.1
45a
CG1978
DOR58
Odorant receptor 45a
Or45a
45F.1
45b
CG12931
DOR107
Odorant receptor 45b
Or45b
CG8502
Cuticular protein 49Ac
Cpr49Ac
49A.1
49a
CG13158
DOR10
DmOr49a
OR49a
Odorant receptor 49a
Or49a
CG12370
CG13156
CRF-like diuretic hormonereceptor 2
DH-R
DH44-R2
DH44R2
DH[[44]]-R2
Dh44 receptor 2
Dh442
Dh44R2
Diuretic hormone 44 receptor 2
anon-WO0170980.103
anon-WO0170980.104
Dh44-R2
56d
CG15904
DmelIR56d
IR56d
Ionotropic receptor 56d
ionotropic receptor 56d
Ir56d
56E.1
56a
CG12501
DOR59
DmOr56a
OR56a
Odorant receptor 56a
Or-56a
odorant receptor 56a
Or56a
59E.1
59b
CG3569
DOR119
DmOR59B
DmOr59b
OR59b
Odorant receptor 59b
Or59B
Or59b
59E.2
59c
CG17226
DOR120
Odorant receptor 59c
Or59c
BcDNA:RH09340
CG13565
CG1565
Drm Orcokinin
OK
OK-A
OK-B
Orco
Orcokinin
Orcokinin B
orcokinin
Orcokinin
BcDNA:SD05282
CG13586
CHH-like
Drm-ITP
DrmITP
DrmITPL1
DrmITPL2
ION TRANSPORT PEPTIDE
Ion transport peptide
Itp
chgh
ion transport peptide
ion transport polypeptide
itp
ITP
APK
APK peptide
CG3441
IPNa
IPNamide
IPNamide peptide
MTY-amide
MTYa
MTYamide
MTYamide peptide
NPLP-1
NPLP1
Neuropeptide like precursor 1
Neuropeptide like precursor protein 1
Neuropeptide-like precursor 1
VQQ
neuropeptide-like precursor 1
nplp1
Nplp1
CG13936
CNMamide
CNMa
63B.1
63a
CG9969
DOR28
OR63a
Odorant receptor 63a
Or63aA
Or63a
CG14979
DmGr63a
GR63a
Gr63F1
Gustatory receptor 63F1
Gustatory receptor 63a
gr63a
Gr63a
CG14987
CG33157
Dmel64d
GR64d
Gr64
Gustatory receptor 64d
Gr64d
64a
CG10633
CT29782
DmIr64a
DmelIR64a
IR64A
IR64a
Ionotropic receptor 64a
Ir64
ionotropic receptor 64a
ir64a
Ir64a
CG10626
DLKR
Drosokinin receptor
Kinin receptor
LK-R
LKR
Leucokinin R
Leucokinin receptor
LkR
anon-WO0131005.17
anon-WO0170980.118
anon-WO0170980.119
dLKR
leucokinin receptor
lkr
Lkr
CG7189
GR66A
GR66C1
GR66a
Gr66
Gr66A
Gr66C1
Gustatory receptor 66C1
Gustatory receptor 66a
gustatory receptor 66a
Gr66a
ANKTM1
Anktm1
CG5751
CG5761
CT18073
DmTRPA1
TRPA
TRPA1
TrPA1
Transient receptor potential A 1
Transient receptor potential A1
Transient receptor potential cation channel
Transient receptor potential cation channel A1
Transient receptor potential cation channel A1 ortholog
Trp
Trp1A
TrpA
Trpa1
dANKTM1
dTRPA
dTRPA1
dTrpA
dTrpA1
dmTRPA1
dtrpA1
transient receptor potential A1
transient-receptor-potential A1
trpA1
trpa1
TrpA1
67B.1
67a
CG12526
DOR84
DmOR67a
DmOr67a
Odorant receptor 67a
odorant receptor 67a
Or67a
67B.2
67b
CG14176
DmOr67b
OR67b
Odorant receptor 67b
Or67b
Akh
CG8167
DILP
DILP 2
DILP-2
DILP2
DILPs
Dilp
Dilp 2
Dilp-2
Dilp2
Drosophila insulin like peptide 2
Drosophila insulin-like peptide 2
Drosophila insulin-like receptor
ILP-2
ILP2
ILPs
IRP
IlP2
Ilp
Ilp-2
Insulin- related peptide 2
Insulin-like peptide
Insulin-like peptide 2
Insulin-related peptide
dILP-2
dILP2
dIlp2
dilp
dilp-2
dilp2
dipl2
dlp
ilp2
insulin-like 2
insulin-like peptide
insulin-like peptide 2
insulin-like peptide-2
insulin/insulin-like growth factor
llp2
Ilp2
67D.1
67c
CG14156
DOR77
DmOR67C
OR67c
Odorant receptor 67c
Or67c
67d
CG14157
DmOr67d
DmelOr67d
OR67d
Odorant receptor 67d
Olfactory receptor 67d
or67d
Or67d
68a
CG6185
CT19410
DmelIR68a
IR68a
Ionotropic receptor 68a
ionotropic receptor 68a
Ir68a
CG5638
DMELRH7
RH7
Rh
Rhodopsin
Rhodopsin 7
anon-WO0170980.34
anon-WO0170980.35
rh7
rhodopsin
Rh7
CG5842
CT18317
DmNan
Iav
NAN
NANCHUNG
Nan
Nanchung
OCR
TRPV
nanchung
transient receptor potential vanilloid
nan
71B.1
71a
CG17871
DOR14
DmOr71a
DmelOR71a
OR71a
Odorant receptor 71a
Or71aA
Or71aD
Or71c
or71a
Or71a
74A.1
74a
CG13726
DOR26
OR74a
Odorant receptor 74a
Or74a
ASB
AST-B
Allatostatin B
Allatostatin cricket-type
Allostatin B
Ast-B
AstB
AstB-1
AstB/MIP
CG6456
DAP-B
DmMIP1
DmMIP2
DmMIP3
DmMIP4
DmMIP5
Drm-MIP
Drm-MIP-1
Drm-MIP-2
Drm-MIP-3
Drm-MIP-4
Drm-MIP-5
Drostatin-B1
Drostatin-B2
Drostatin-B3
Drostatin-B4
Drostatin-B5
MIP
MIP-1
MIP-2
MIP-3
MIP-4
MIP-5
MIP1
MIP2
MIP3
MIP4
MIP5
Mioinhibiting Peptide Precursor
Mip-like peptide
Myoinhibiting peptide
Myoinhibiting peptide precursor
Myoinhibitory peptide
allatostatin (B-type)
allatostatin B
allatostatin B-1
allatostatin-B
allatostatin-B1
drostatin-B2
mip
myoinhibiting peptide
myoinhibiting peptide precursor
myoinhibitory peptide
Mip
75a
CG14585
DmIr75a
DmelIR75a
IR75a
IR75abc
Ionotropic receptor 75a
Ir75abc
ionotropic receptor 75a
Ir75a
75d
CG14076
CT33663
DmelIR75d
IR75d
Ionotropic receptor 75d
ionotropic receptor 75d
lr75d
Ir75d
83A.1
83a
CG10612
DOR44
Odorant receptor 83a
Or83a
83D.1
83c
CG15581
DOR116
Odorant receptor 83c
Or83c
84a
CG10101
CT28433
DmelIR84a
IR84a
Ionotropic receptor 84a
ionotropic receptor 84a
Ir84a
85A.4
85a
CG7454
DOR31
DmOR85A
DmOr85a
OR85a
Odorant receptor 85a
Or-85a
or85a
Or85a
85A.1
85b
CG11735
DOR115
DmOR85b
DmOr85b
OR85b
Odorant receptor 85b
Or85b
85A.3
85c
CG17911
DOR78
OR85c
Odorant receptor 85c
Or85c
85.2
85A.2
85d
CG11742
DOR114
Odorant receptor 85d
Or85d
CG12952
Sage
bHLHc7
salivary gland-expressed bHLH
sage
85D.1
85f
CG16755
DOR32
DmOr85f
OR85f
Odorant receptor 85f
Or85f
CG14734
DTK
DTK-1
DTK-2
DTK-3
DTK-4
DTK-5
DTK-6
DTK1
DTk
DmTK6
Drm-TK
Drm-TK-1
Drm-TK-2
Drm-TK-3
Drm-TK-4
Drm-TK-5
Drm-TK-6
Dtk
TAP-5
TK
TK-1
Tachykinin
Tachykinin 1
Tachykinin 2
Tachykinin 4
Tachykinin 5
Tachykinin-related
Tyk
dTK
dtk
neurokinin
preprotachykinin
tachykinin
tachykinin-1
tachykinin-3
tachykinin-6
tachykinin-like peptide
Tk
BcDNA:RE10132
CCH2
CCHamid2
CCHamide
CCHamide 2
CCHamide-2
CCHamide2
CCM
CCha2
CG14375
Dm-CCHa2
Drm-CCHamide-2
ccha2
CCHa2
CCH1
CCHA1
CCHamide
CCHamide 1
CCHamide-1
CCHamide1
CCM
CCha1
CG14358
Dm-CCHa1
Drm-CCHamide-1
ccha1
CCHa1
88A.1
88a
CG14360
DOR99
DmOr88a
OR88a
Odorant receptor 88a
or88a
Or88a
Ammonium transporter
CG6499
Amt
CG14871
Trissin
trissin
Trissin
48 related 2
48-related 2
48-related-2
CG5952
bHLHa33
fer2
ferritin 2
Fer2
92a
CG15685
DmelIR92a
IR92a
Ionotropic receptor 92a
ionotropic receptor 92a
Ir92a
92E.1
92a
CG17916
DOR111
OR 92a
Odorant receptor 92a
Or92A
Or92a
BURS
Bur alpha
Burs alpha
Burs-alpha
BursA
Bursalpha
Bursicon
Bursicon alpha
Bursicon alpha subunit
Bursicon-alpha
CG13419
burs
burs alpha
burs-alpha
bursalpha
bursicon
bursicon alpha
bursicon alpha subunit
bursicon alpha-subunit
frl
furled wing
tBur
Burs
CCAP prepropeptide
CG4910
Cardioacceleratory peptide
Ccap
Crustacean Cardioactive Peptide
Crustacean cardioactive peptide
DmCCAP
ccap
crustacean cardioactive peptide
CCAP
94D.1
94a
CG17241
DOR108
Odorant receptor 94a
Or94a
94D.2
94b
CG6679
DOR109
OR94b
Odorant receptor 94b
anon-JP2002534971-A.31
anon-JP2002534971-A.32
Or94b
94h
CG17382
DmelIR94h
IR94h
Ionotropic receptor 94h
ionotropic receptor 94h
Ir94h
98B.1
98a
CG5540
DOR110
DmOr98a
OR98a
Odorant receptor 98a
Or-98a
Or98A
Or98a
98C.1
98b
CG1867
DOR121
Odorant receptor 98b
Or98bP
or98b
Or98b
CAP
CAP-2b
CAP2B-1
CAP2B-2
CAP2B-3
CAP2B-like
CAP2B/pyrokinin
CAP2b
CAP2b-1
CAP2b-2
CAP2b-3
CAPA
CAPA-PK
CAPA-PVK-1
CAPA-PVK-2
CAPA-PVK/PK
CAP[[2b]]
CG15520
CPPB
Cap-1
Cap-2
Cap-2b
Cap-3
Capa-1
Capa-2
Capa-PK
Capability
Cardioacceleratory peptide-2b
Drm-CAP-1
Drm-CAP-2
Drm-CAP2b/MT
Drm-MT
Drm-PK
Drm-PK-1
Drm-PVK
Drm-PVK-1
Drm-PVK-2
Drm-capa-1
Drm-myotropin
Drome-capa-1
PVK-2
Periviscerokinin
Pyrokinin
TGPSASSGLWFGPRLamide
cap2b-like
capa
capa 2
capa-1
capa-2
capa-3
capability
cardio acceleratory peptide
myotropin
myotropin-CAP2b-like
pyrokinin
pyrokinin-1
pyrokinin-like
pyrokinin/PBAN-like
Capa
41a
CG17587
CG33492
DmelIR41a
IR41a
Ionotropic receptor 41a
ionotropic receptor 41a
Ir41a
93F.1
CG13417
GR93
GR93F.1
GR93a
Gr93F1
Gustatory receptor 93F.1
Gustatory receptor 93a
Gr93a
68D.1
CG7303
GR68D.1
GR68a
Gr68D1
Gustatory receptor 68D.1
Gustatory receptor 68a
Gr68a
43C.1
43C1
CG1712
DmGr43a
GR43C.1
GR43a
Gr43C1
Gustatory receptor 43C.1
Gustatory receptor 43a
gr43a
Gr43a
28A.1
CG13787
GR28A.1
GR28a
Gr28A1
Gr28A2
Gustatory receptor 28A.1
Gustatory receptor 28A2
Gustatory receptor 28a
Gr28a
(GR) 21a
21D.1
CG13948
DmGr21a
GR21D.1
GR21D1
GR21a
Gr21D1
Gustatory receptor 21D.1
Gustatory receptor 21a
gr21a
Gr21a
82a
CG31519
DOR61
DmOR82A
DmOr82a
OR82a
Odorant receptor 82a
Or82a
69F.1
69a
69b
CG17902
CG32116
CG33264
DOR82
DOR83
DmOr69a
Odorant receptor 69a
Odorant receptor 69b
Or69A
Or69aA
Or69aB
Or69ab
Or69b
or69a
Or69a
65c
CG32403
DOR65
LU27.3
Odorant receptor 65c
Or65c
65b
CG32402
DOR63
LU27.1
Odorant receptor 65b
Or65b
65a
CG32401
DOR66
LU27.2
OR65a
Odorant receptor 65a
odorant receptor 65a
or65a
Or65a
19A.1
19a
CG18859
DOR37
DmOr19a
OR19a
Odorant receptor 19a
Or19a-1
Or19a
CG10251
Portabella
portabella
prt
CG14746
PGRP SC
PGRP-SC
PGRP-SC1
PGRP-SC1A
Peptidoglycan recognition protein SC1a
Peptidoglycan-recognition protein-SC1a precursor
pgrp-sc
pgrp-sc1
picky
PGRP-SC1a
CG13317
DILP
DILP 7
DILP-7
DILP7
DILPs
Dilp
Dilp 7
Dilp7
Drosophila insulin-like peptide 7
ILP7
ILPs
Ilp
Ilp-7
Insulin-like peptide 7
Relaxin
dILP-7
dILP7
dIlp7
dilp
dilp-7
dilp7
dlp
ilp7
insulin-like peptide
insulin-like peptide 7
Ilp7
CG14988
CG32258
CG33157
DmGr64e
Dmel64e
GR64e
Gr64
Gr64A2
Gustatory receptor 64A2
Gustatory receptor 64e
gr64e
Gr64e
CG14986
CG32256
Dmel64c
GR64c
Gr64
Gustatory receptor 64c
gr64c
Gr64c
CG14986
CG32261
Dmel64a
GR64a
GRLU.3
Gr64
Gr64A1
GrLU3
Gustatory receptor 64a
Gustatory receptor LU.3
LU.3
Gr64a
28A3
CG13788
GR28B
GR28B(D)
GR28b
GRLU.2
Gr28A3
Gr28A4
Gr28b(D)
Gr28b.a
Gr28b.b
Gr28b.c
Gr28b.d
Gr28b.e
Gr28bA
Gr28bB
Gr28bC
Gr28bD
Gr28bE
Gr28be
GrLU2
Gustatory receptor 28A4
Gustatory receptor 28b
Gustatory receptor LU.2
LU.2
gr28b
Gr28b
CG31930
CR31930
GR22d
Gr22dP
Gr2940.2
Gustatory receptor 22d
Gustatory receptor 2940.2
Gr22d
CG15677
CG15679
CG30263
CT35864
mdcds_15969
stumble
stum
31a
CG31718
DmelIR31a
IR31a
Ionotropic receptor 31a
ionotropic receptor 31a
Ir31a
CG31956
CG8845
CG8845b
Polypeptide N-Acetylgalactosaminyltransferase 4
pgant4
polypeptide GalNAc transferase 4
Pgant4
CG14988
CG32255
DmGr64f
Dmel64f
GR64f
Gr64
Gr64A3
Gustatory receptor 64A3
Gustatory receptor 64f
Gr64f
CG32693
GR9a
Gustatory receptor 9a
Gr9a
CG15242
CG33349
PPK25
Ppk25
llz
lounge lizard
pickpocket 25
ppk-25
ppk25
AYRKPPFNGSLFamide
CG33527
Drm-IFa
Drm-SIFa
IFAMIDE
IFa
IFamide
Neb-LFamide
SIF
SIFR
SIFamide
SIfamide
neuropeptide AYRKPPFNGSIFamide
neuropeptide IFamide
SIFa
CG32825
Odorant receptor 19b
Odorant receptor-19b
Or-19b
Or19b
CG14842
CG14843
CG34388
NTL
Natalisin
Ntl
natalisin
ntl
natalisin
CG15488
CG15489
CG34395
CG6246
NUB
NUBBIN
Nb
Nub
Nubbin
Oct-1
Oct1
PDM-1
PDM1
POU domain 1
POU domain protein 1
POU33F1
Pdm
Pdm-1
Pdm1
Pdm1/nubbin
dOct1
dPOU-19
dPOU-19/pdm-1
dPOU19
nb
nubbin
pdm
pdm-1
pdm1
twain
twn
nub
CG7438
Dm IA
DmIA
DroMIA
IA
MYOIA
Mhc1
Myo-IA
Myo1A
Myo1D
Myo1a
MyoIA
MyoID
Myosin 1D
Myosin 31DF
Myosin IA
Myosin ID
Myosin-IA
Myosin31DF
mhc1
myo1D
myo31DF
myoID
myosin 1a
myosin I
myosin IA
myosin ID
myosin-IA
myosin1A
souther
type ID unconventional myosin 31DF
unconventional myosin 31DF
Myo31DF
Amn
Amnesiac
Anm
CG11937
Drm-amn
EP(X)1442
PACAP
PACAP-38
PACAP-like
PACAP38
PACAP38-like
Pacap38
Pituitary adenylyl cyclase-activating polypeptide
Pituitary adenylyl cyclase-activating polypeptide-like
amnesiac
cheap date
cheapdate
chpd
dAmn
amn
ApoL1
ApoL2
ApoLI
ApoLII
ApoLpp
Apolipophorin
Apolpp
CG11064
DRBP
LPP
Lipophorin
Lpp
RFABG
RFABP
RFBP
Retinoid and Fatty Acid Binding Glycoprotein
Retinoid and fatty-acid binding protein
Retinoid- and Fatty Acid-binding Glycoprotein
Retinoid- and fatty acid-binding glycoprotein
Retinoid- and fatty acid-binding protein
Retinoid- and fatty-acid binding protein
Retinoid-fatty acid-binding glycoprotein
RfaBP
RfaBp
Rfabg
Rfabp
T3
apoLI
apoLII
apoLPP
apoLpp
apolipophorin
apolipophorin I
apolipophorin II
apolipophorin-2
chr4:1088013..1088173
lipophorin
retinoid and fatty acid binding protein
retinoid- and fatty acid-binding gene
retinoid- and fatty acid-binding glycoprotein
retinoid-fatty acid binding protein
rfabg
apolpp
60b
CG13582
CG42289
DmelIR60b
IR60b
Ionotropic receptor 60b
ionotropic receptor 60b
Ir60b
94e
CG17379
CG42298
DmelIR94e
IR94e
Ionotropic receptor 94e
ionotropic receptor 94e
Ir94e
40a
CG42352
CG5922
CG5929
DmelIR40a
IR40a
Ionotropic receptor 40a
Ir40A
ionotropic receptor 40a
Ir40a
BG:DS00180.10
CG8942
CT25688
Nim
NimC
Nimrod C1
NimrodC1
P1
nimC1
nimrod
nimrod C1
nimrodC1
NimC1
44C11
9F8A9
CG4262
EC7
EG:65F1.2
ELAV
ELav
END1-2
ElaV
Elav
Elav-9F8A9
Embryonic Lethal Abnormal Vision
Embryonic lethal abnormal vision
Embryonic lethal abnormal visual system
Embryonically lethal abnormal vision
dHuR
elav-1
elav-2
elav-3
embryonic lethal abnormal vision
embryonic lethal abnormal visual system
embryonic lethal, abnormal vision
fliJ
l(1)1Be
l(1)EC7
l(1)G0031
l(1)G0319
weg
weniger
elav
76a
CG34257
CG42584
CG8533
CT24909
DmelIR76a
IR76a
Ionotropic receptor 76a
ionotropic receptor 76a
ir76a
Ir76a
Bond
CG6921
James bond
james bond
bond
75c
CG14586
CG14586-A
CG42642
DmelIR75c
IR75abc
IR75c
Ionotropic receptor 75c
Ir75abc
ionotropic receptor 75c
Ir75c
75b
CG14586
CG14586-B
CG42643
DmelIR75b
IR75abc
IR75b
Ionotropic receptor 75b
Ir75abc
ionotropic receptor 75b
Ir75b
CG34239
CG6327
CG43693
CG18103
CG31608
CG44122
CG8486
DmPIEZO
DmPiezo
Dmpiezo
OrfKD
Piezo
anon-EST:Liang-1.32
clone 1.32
fos-related gene at 28F
fos28F
fos500
piezo
Piezo
CG18531
EG:BACN32G11.1
GR1F.1
GR2B1
GR2a
Gr1F1
Gr2B1
Gustatory receptor 1F.1
Gustatory receptor 2B1
Gustatory receptor 2a
Gr2a
ASA-receptor
ASR
AST-R
Allatostatin A receptor 1
Allatostatin Receptor
AlstR
AstA R1
AstAR1
CG2872
D.AlstR1
DAR-1
DAR1
DGR
Dar-1
EG:121E7.2
GR
Galanin Receptor
AstA-R1
CG14177
CG3280
CG46121
DmTMC
TMC
Tic
Tmc-L
Transmembrane channel-like
tmc
transmembrane channel-like
Tmc
A1
A[[1]]
Bc
Black Cell
Black cell
Black cells
CG42639
CG5779
Diphenol oxidase A1 subunit
DmePPOA1
Dox-A1
DoxA1
Monophenol oxidase
Monophenoloxidase
Mox
PO
PO A1
PO54
PPO
PPO-1
PPO-A1
PROPO-A1
Phox
Pro-phenol oxidase A1
ProPO
ProPO A1
ProPO54
ProPo
Prophenoloxidase
Prophenoloxidase 1
Prophenoloxidase A1
Propo
bc
black cells
i12
phenoloxidase
pro-A
pro-PO
pro-POA[[1]]
pro-phenol oxidase A1
proPO
proPO A[[1]]
proPO-A1
proPO54
prophenol oxidase A1
prophenoloxidase
prophenoloxidase A[[1]]
PPO1
BG:DS00929.14
CG3506
CG43081
CG46283
DDX4
DmRH25
EP(2)0812
VAS
VASA
Vas
Vasa
cgt
courgette
female sterile(2)ltoRJ36
fs(2)ltoRJ36
no-relish
vasa
vas
18402
CG18402
DIHR
DILR
DIR
DIRH
DIRbeta
DInR
DInr
Dir-a
Dir-b
Drosophila Insulin Receptor
Drosophila insulin receptor
INR
INS
IR
Igf-1 receptor
Igfr1
Inr
Inr-alpha
Inr-beta
InsR
Insulin
Insulin Receptor
Insulin receptor
Insulin-like Receptor
Insulin-like receptor
Insulin-receptor
RTK
dINR
dINSR
dIR
dIRH
dInR
dInr
dInsR
dinR
dinr
dir
er10
inR
inr
insulin receptor
insulin receptor homolog
insulin receptor homologue
insulin-like receptor
insulin-like receptor tyrosine kinase
insulin-receptor
insulin/IGF receptor
insulin/insulin-like growth factor receptor
l(3)05545
l(3)93Dj
l(3)er10
lethal(3)93Dj
lnR
sprout
InR
Br
Bristled
CG4889
Complementation group I
D.int-1
DWint-1
DWnt-1
Dint-1
Dm Wg
Dm-1
Dwnt-1
Gla
Glazed
I
Sp
Sternopleural
WG
WNT
Wg
Wingless
Wnt
Wnt-1
Wnt1
dWnt
fg
flag
glazed
int-1
l(2)02657
l(2)SH1281
l(2)SH2 1281
l(2)rO727
l(2)wg
lethal (2) SH1281
spade
spd
wgl
wingless
wnt
wnt1
wg
BcDNA:GH07466
CG5518
sda
slamdance
CG46339
An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
continuant
An entity that has temporal parts and that happens, unfolds or develops through time.
occurrent
A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
independent continuant
An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
process
disposition
A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
realizable entity
quality
A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
specifically dependent continuant
A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
role
A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
generically dependent continuant
function
An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
material entity
anatomical entity
connected anatomical structure
material anatomical entity
multi-cell-part structure
neuron projection bundle
multicellular anatomical structure
biological entity
cell
neuron
An embryonic structure that derives from one of the germ layers resulting from gastrulation (Hartenstein, 1993).
fly_anatomy.ontology
FBbt:00000000
germ layer derivative
An embryonic structure that derives from one of the germ layers resulting from gastrulation (Hartenstein, 1993).
FlyBase:FBrf0064803
An individual member of the species Drosophila melanogaster.
CARO:0000012
NCBITaxon:7227
UBERON:0000468
fly_anatomy.ontology
Drosophila
whole organism
FBbt:00000001
organism
An individual member of the species Drosophila melanogaster.
FBC:DOS
The three main divisions of the whole organism formed from groups of segments.
UBERON:6000002
fly_anatomy.ontology
FBbt:00000002
tagma
The three main divisions of the whole organism formed from groups of segments.
FBC:GG
One of the repeated divisions of the whole organism.
UBERON:0000914
fly_anatomy.ontology
FBbt:00000003
segment
One of the repeated divisions of the whole organism.
FBC:GG
Anterior part of the organism, including mouthparts, some sensory structures and the brain.
UBERON:0000033
UBERON:6000004
fly_anatomy.ontology
FBbt:00000004
head
Anterior part of the organism, including mouthparts, some sensory structures and the brain.
FBC:CP
Head segment derived from the second embryonic segment (between the labral and antennal segments). In the larva, this segment includes Bolwig's organ.
UBERON:6000005
fly_anatomy.ontology
acron
FBbt:00000005
While classically this structure is not considered to be a segment, but rather to be the non-segmental acron - anterior to the first segment, this ontology follows Schmidt-Ott and colleagues (Schmidt-Ott et al., 1994, and Schmidt-Ott and Technau, 1992) in considering it to be the second segment (posterior to the labral segment in the segmenting embryo). This is based on relating gene expression in the early segmenting embryo to the effects of loss of function mutations of these genes on formation of larval head structures.
ocular segment
Head segment derived from the second embryonic segment (between the labral and antennal segments). In the larva, this segment includes Bolwig's organ.
FlyBase:FBrf0055841
FlyBase:FBrf0075072
Any segment (FBbt:00000003) that is part of some head (FBbt:00000004).
UBERON:6000006
fly_anatomy.ontology
FBbt:00000006
head segment
Any segment (FBbt:00000003) that is part of some head (FBbt:00000004).
FlyBase:FBrf0075072
A segment that is anterior to the gnathal segments.
UBERON:6000007
pregnathal segment
preoral segment
fly_anatomy.ontology
cephalic segment
procephalon
FBbt:00000007
procephalic segment
A segment that is anterior to the gnathal segments.
FBC:GG
Anteriormost procephalic segment, anterior to the ocular segment. In the adult it bears the clypeo-labrum.
UBERON:6000008
fly_anatomy.ontology
clypeo-labrum
FBbt:00000008
labral segment
Anteriormost procephalic segment, anterior to the ocular segment. In the adult it bears the clypeo-labrum.
FlyBase:FBrf0055841
FlyBase:FBrf0075072
FlyBase:FBrf0089570
Segment anterior to the intercalary segment. In the adult it bears the antennae.
UBERON:6000009
fly_anatomy.ontology
FBbt:00000009
antennal segment
Segment anterior to the intercalary segment. In the adult it bears the antennae.
FBC:DOS
Most posterior of the procephalic segments. Contains the tritocerebrum.
fly_anatomy.ontology
FBbt:00000010
intercalary segment
Most posterior of the procephalic segments. Contains the tritocerebrum.
FlyBase:FBrf0075072
FlyBase:FBrf0089570
The head segments that develop posterior to the embryonic/larval mouth.
UBERON:6000011
fly_anatomy.ontology
postoral segment
FBbt:00000011
gnathal segment
The head segments that develop posterior to the embryonic/larval mouth.
FBC:GG
Most anterior of the gnathal segments.
fly_anatomy.ontology
FBbt:00000012
mandibular segment
Most anterior of the gnathal segments.
FlyBase:FBrf0089570
Second gnathal segment, between the mandibular and labial segments. In the adult, it has a paired apodeme and a paired appendage, the maxillary palpus.
fly_anatomy.ontology
FBbt:00000013
maxillary segment
Second gnathal segment, between the mandibular and labial segments. In the adult, it has a paired apodeme and a paired appendage, the maxillary palpus.
FlyBase:FBrf0007734
FlyBase:FBrf0089570
Most posterior of the gnathal segments. In the adult it bears a pair of fused appendages, the labia, and its ectodermal invaginations give rise to the salivary glands.
UBERON:6000014
fly_anatomy.ontology
FBbt:00000014
labial segment
Most posterior of the gnathal segments. In the adult it bears a pair of fused appendages, the labia, and its ectodermal invaginations give rise to the salivary glands.
FlyBase:FBrf0007734
The main middle section of the insect body comprising three thoracic rings: the pro-, the meso- and the metathoraces which are more or less well fused and cask-like sometimes having on the upper lateral part one of two pairs of wings, while on the ventrolateral part each thoracic ring bears a pair of legs.
UBERON:6000015
fly_anatomy.ontology
FBbt:00000015
thorax
The main middle section of the insect body comprising three thoracic rings: the pro-, the meso- and the metathoraces which are more or less well fused and cask-like sometimes having on the upper lateral part one of two pairs of wings, while on the ventrolateral part each thoracic ring bears a pair of legs.
FlyBase:FBrf0166419
Any segment (FBbt:00000003) that is part of some thorax (FBbt:00000015).
UBERON:6000016
fly_anatomy.ontology
FBbt:00000016
thoracic segment
Any segment (FBbt:00000003) that is part of some thorax (FBbt:00000015).
FBC:Autogenerated
The first (most anterior) segment of the thorax.
UBERON:6000017
fly_anatomy.ontology
prothorax
t1
thoracic segment 1
FBbt:00000017
prothoracic segment
The first (most anterior) segment of the thorax.
FBC:DOS
The second (middle) segment of the thorax.
UBERON:6000018
fly_anatomy.ontology
mesothorax
t2
thoracic segment 2
FBbt:00000018
mesothoracic segment
The second (middle) segment of the thorax.
FBC:DOS
The third (most posterior) segment of the thorax.
UBERON:6000019
fly_anatomy.ontology
metathorax
t3
thoracic segment 3
FBbt:00000019
metathoracic segment
The third (most posterior) segment of the thorax.
FBC:DOS
The most posterior of the three tagma (FBbt:00000002).
UBERON:6000020
fly_anatomy.ontology
FBbt:00000020
abdomen
The most posterior of the three tagma (FBbt:00000002).
FlyBase:FBrf0166419
Metameric subdivision of the abdomen.
UBERON:6000021
fly_anatomy.ontology
FBbt:00000021
abdominal segment
Metameric subdivision of the abdomen.
FBC:SPR
Most anterior segment of the abdomen.
fly_anatomy.ontology
a1
FBbt:00000022
abdominal segment 1
Most anterior segment of the abdomen.
FBC:CP
Second most anterior segment of the abdomen.
fly_anatomy.ontology
a2
FBbt:00000023
abdominal segment 2
Second most anterior segment of the abdomen.
FBC:CP
Third most anterior segment of the abdomen.
fly_anatomy.ontology
a3
FBbt:00000024
abdominal segment 3
Third most anterior segment of the abdomen.
FBC:CP
Fourth most anterior segment of the abdomen.
fly_anatomy.ontology
a4
FBbt:00000025
abdominal segment 4
Fourth most anterior segment of the abdomen.
FBC:CP
Fifth most anterior segment of the abdomen.
fly_anatomy.ontology
a5
FBbt:00000026
abdominal segment 5
Fifth most anterior segment of the abdomen.
FBC:CP
Sixth most anterior segment of the abdomen.
fly_anatomy.ontology
a6
FBbt:00000027
abdominal segment 6
Sixth most anterior segment of the abdomen.
FBC:CP
Seventh most anterior segment of the abdomen.
fly_anatomy.ontology
a7
FBbt:00000028
abdominal segment 7
Seventh most anterior segment of the abdomen.
FBC:CP
Eighth most anterior segment of the abdomen.
UBERON:6000029
fly_anatomy.ontology
a8
FBbt:00000029
abdominal segment 8
Eighth most anterior segment of the abdomen.
FBC:CP
Ninth most anterior segment of the abdomen.
UBERON:6000030
fly_anatomy.ontology
a9
FBbt:00000030
abdominal segment 9
Ninth most anterior segment of the abdomen.
FBC:CP
Tenth most anterior segment of the abdomen.
fly_anatomy.ontology
a10
FBbt:00000031
abdominal segment 10
Tenth most anterior segment of the abdomen.
FBC:CP
Eleventh most anterior segment of the abdomen.
fly_anatomy.ontology
a11
FBbt:00000032
abdominal segment 11
Eleventh most anterior segment of the abdomen.
FBC:CP
Dorsal portion of the eighth segment and all structures posterior to it (Pignoni et al., 1992).
fly_anatomy.ontology
FBbt:00000033
telson
Dorsal portion of the eighth segment and all structures posterior to it (Pignoni et al., 1992).
FlyBase:FBrf0055857
Structure that develops from an oocyte once it has been released from the ovary by ovulation (Qazi et al., 2003). Ovulation triggers egg activation, which alters envelope permeability and causes the resumption of meiosis and translation (Qazi et al., 2003). Fertilization of the egg begins embryogenesis (Loppin et al., 2015).
ovum
fly_anatomy.ontology
FBbt:00000034
egg
Structure that develops from an oocyte once it has been released from the ovary by ovulation (Qazi et al., 2003). Ovulation triggers egg activation, which alters envelope permeability and causes the resumption of meiosis and translation (Qazi et al., 2003). Fertilization of the egg begins embryogenesis (Loppin et al., 2015).
FlyBase:FBrf0158848
FlyBase:FBrf0229233
ovum
FlyBase:FBrf0158848
The nutritive substance contained in the egg.
fly_anatomy.ontology
FBbt:00000035
yolk
The nutritive substance contained in the egg.
FBC:GG
fly_anatomy.ontology
FBbt:00000036
Made obsolete because of redundancy with GO cell component term. Please use GO:0042718 instead. ds060616.
obsolete yolk granule
true
fly_anatomy.ontology
FBbt:00000037
Made obsolete because of redundancy with GO cell component term. Please use GO:0005811, 'lipid particle' instead.
obsolete lipid droplet
true
A hard shell external to the vitelline membrane of the egg.
GO:0042600
UBERON:0000920
fly_anatomy.ontology
FBbt:00000038
chorion
A hard shell external to the vitelline membrane of the egg.
FBC:GG
The middle layer that envelops the oocyte and forms part of the eggshell. It surrounds a thin wax layer, which in turn envelops the vitelline membrane. The inner chorionic layer is 40-50nm wide and consists of 8-10 crystalline sublayers that appear as horizontal striations, parallel to the oocyte surface and spaced at approximately 5nm.
fly_anatomy.ontology
FBbt:00000039
inner chorionic layer
The middle layer that envelops the oocyte and forms part of the eggshell. It surrounds a thin wax layer, which in turn envelops the vitelline membrane. The inner chorionic layer is 40-50nm wide and consists of 8-10 crystalline sublayers that appear as horizontal striations, parallel to the oocyte surface and spaced at approximately 5nm.
FlyBase:FBrf0029042
FlyBase:FBrf0035166
One of the outer layers that envelops the oocyte and forms part of the eggshell. It surrounds the inner chorionic layer and is in turn enveloped by the exochorion. The endochorion is composed of a thin floor (or inner endochorion), and a continuous domed roof (or outer endochorion). The floor and roof are connected by vertical pillars. The outer surface of the roof shows protrusions organized in a regular roof network.
inner endochorion
outer endochorion
fly_anatomy.ontology
FBbt:00000040
endochorion
One of the outer layers that envelops the oocyte and forms part of the eggshell. It surrounds the inner chorionic layer and is in turn enveloped by the exochorion. The endochorion is composed of a thin floor (or inner endochorion), and a continuous domed roof (or outer endochorion). The floor and roof are connected by vertical pillars. The outer surface of the roof shows protrusions organized in a regular roof network.
FlyBase:FBrf0029042
FlyBase:FBrf0035166
inner endochorion
FlyBase:FBrf0029042
outer endochorion
FlyBase:FBrf0029042
Outermost layer that envelops the oocyte and forms part of the eggshell. It faces the follicular cells and surrounds the endochorion. The exochorion is 300-500nm wide and appears to consist of two fibrous layers, oriented parallel to the oocyte surface.
fly_anatomy.ontology
FBbt:00000041
exochorion
Outermost layer that envelops the oocyte and forms part of the eggshell. It faces the follicular cells and surrounds the endochorion. The exochorion is 300-500nm wide and appears to consist of two fibrous layers, oriented parallel to the oocyte surface.
FlyBase:FBrf0029042
FlyBase:FBrf0035166
A protective layer that is apposed to the oocyte and forms part of the eggshell. It is surrounded by a thin wax layer, followed by the inner chorionic layer. The vitelline membrane is approximately 300nm wide, and appears as a continuous granular layer without evident substructure.
UBERON:0003125
fly_anatomy.ontology
FBbt:00000042
vitelline membrane
A protective layer that is apposed to the oocyte and forms part of the eggshell. It is surrounded by a thin wax layer, followed by the inner chorionic layer. The vitelline membrane is approximately 300nm wide, and appears as a continuous granular layer without evident substructure.
FlyBase:FBrf0029042
FlyBase:FBrf0035166
A small opening at the anterior pole of the egg through which the spermatozoa enter.
GO:0070825
fly_anatomy.ontology
FBbt:00000043
micropyle
A small opening at the anterior pole of the egg through which the spermatozoa enter.
FBC:DOS
FBC:GG
Specialization of the chorion that forms the border of the operculum. The operculum opens during hatching by splitting of the eggshell along the collar.
fly_anatomy.ontology
FBbt:00000044
collar
Specialization of the chorion that forms the border of the operculum. The operculum opens during hatching by splitting of the eggshell along the collar.
FBC:DOS
Specialization of the chorion in the dorsal/anterior of the eggshell. Hatching occurs by splitting of the eggshell around the edge of the operculum, opening a hatch through which the larva can crawl.
fly_anatomy.ontology
FBbt:00000045
egg operculum
Specialization of the chorion in the dorsal/anterior of the eggshell. Hatching occurs by splitting of the eggshell around the edge of the operculum, opening a hatch through which the larva can crawl.
FBC:DOS
Paired appendage of the eggshell, located on the anterior-dorsal side of the egg, just posterior to the operculum. Functions as a respiratory structure. The dorsal appendages are formed during the final stages of oogenesis, when dorsal appendage forming follicle cells form paired tubular structures and secrete chorion proteins into the tube lumens to create the dorsal appendages. During eggshell maturation the dorsal appendage forming cells slough off, revealing the chorionic dorsal appendages inside.
UBERON:6000046
chorionic appendage
fly_anatomy.ontology
FBbt:00000046
Note that dorsal appendage structure varies considerably between Drosophilid species.
dorsal appendage
Paired appendage of the eggshell, located on the anterior-dorsal side of the egg, just posterior to the operculum. Functions as a respiratory structure. The dorsal appendages are formed during the final stages of oogenesis, when dorsal appendage forming follicle cells form paired tubular structures and secrete chorion proteins into the tube lumens to create the dorsal appendages. During eggshell maturation the dorsal appendage forming cells slough off, revealing the chorionic dorsal appendages inside.
FBC:DOS
FlyBase:FBrf0064777
FlyBase:FBrf0174518
chorionic appendage
FlyBase:FBrf0047871
An acellular anatomical structure at the posterior pole of the eggshell that is postulated to act in respiration. It consists of the imprints of 6-15 small central cells surrounded by the imprints of 10-15 peripheral cells, which can be distinguished from the larger imprints of the main body follicle cells.
fly_anatomy.ontology
FBbt:00000047
posterior aeropyle
An acellular anatomical structure at the posterior pole of the eggshell that is postulated to act in respiration. It consists of the imprints of 6-15 small central cells surrounded by the imprints of 10-15 peripheral cells, which can be distinguished from the larger imprints of the main body follicle cells.
FlyBase:FBrf0123036
The haploid nucleus of the oocyte or sperm cell following fertilization.
GO:0045120
fly_anatomy.ontology
FBbt:00000048
pronucleus
The haploid nucleus of the oocyte or sperm cell following fertilization.
FlyBase:FBrf0064779
The haploid nucleus of the sperm cell following fertilization.
GO:0001940
fly_anatomy.ontology
FBbt:00000049
male pronucleus
The haploid nucleus of the sperm cell following fertilization.
FlyBase:FBrf0064779
The innermost of the four oocyte haploid nuclei after the second meiotic division following fertilization. The other 3 nuclei form the polar body nuclei. The female pronucleus migrates to the center of the embryo to fuse with the male pronucleus.
GO:0001939
fly_anatomy.ontology
FBbt:00000050
female pronucleus
The innermost of the four oocyte haploid nuclei after the second meiotic division following fertilization. The other 3 nuclei form the polar body nuclei. The female pronucleus migrates to the center of the embryo to fuse with the male pronucleus.
FlyBase:FBrf0064779
Haploid nucleus formed by the two meiotic divisions following oocyte ovulation. There are 3 polar body nuclei, located in a single file roughly perpendicular to the dorsal surface and to the long axis of the embryo. The fourth, and most inner of the haploid nuclei, forms the female pronucleus. The polar body nuclei are surrounded by yolk-free cytoplasm.
fly_anatomy.ontology
FBbt:00000051
polar body nucleus
Haploid nucleus formed by the two meiotic divisions following oocyte ovulation. There are 3 polar body nuclei, located in a single file roughly perpendicular to the dorsal surface and to the long axis of the embryo. The fourth, and most inner of the haploid nuclei, forms the female pronucleus. The polar body nuclei are surrounded by yolk-free cytoplasm.
FlyBase:FBrf0064779
FlyBase:FBrf0089570
.
UBERON:0000922
fly_anatomy.ontology
FBbt:00000052
embryo
.
FlyBase:FBrf0039741
FlyBase:FBrf0041814
The outer region of cytoplasm of a syncytial blastoderm embryo. It has a distinct cytoskeletal structure, different from the rest of the cytoplasm, and encompasses the region to which nuclei migrate during blastoderm stages.
fly_anatomy.ontology
FBbt:00000053
embryonic cortex
The outer region of cytoplasm of a syncytial blastoderm embryo. It has a distinct cytoskeletal structure, different from the rest of the cytoplasm, and encompasses the region to which nuclei migrate during blastoderm stages.
FlyBase:FBrf0044702
A collective term for stages 1-4.
fly_anatomy.ontology
FBbt:00000054
DEPRECATION WARNING.
cleavage stage embryo
A collective term for stages 1-4.
FBC:DOS
Nucleus found in the embryo during cleavage stage, including stages 1 to 4.
fly_anatomy.ontology
FBbt:00000055
cleavage nucleus
Nucleus found in the embryo during cleavage stage, including stages 1 to 4.
FlyBase:FBrf0064779
FlyBase:FBrf0089570
Yolk-free cytoplasmic region that surrounds each zygotic nucleus in the embryonic syncytium together with its nucleus starting from stage 1.
fly_anatomy.ontology
FBbt:00000056
energid
Yolk-free cytoplasmic region that surrounds each zygotic nucleus in the embryonic syncytium together with its nucleus starting from stage 1.
FlyBase:FBrf0064779
FlyBase:FBrf0089570
Nucleus that stays behind in the yolky interior of the syncytial embryo following the migration of a subset of nuclei to the periphery from cycle 8. There are around 50 of these nuclei. Yolk nuclei cease dividing in cycle 10 and become polyploid.
vitellophage
fly_anatomy.ontology
FBbt:00000057
yolk nucleus
Nucleus that stays behind in the yolky interior of the syncytial embryo following the migration of a subset of nuclei to the periphery from cycle 8. There are around 50 of these nuclei. Yolk nuclei cease dividing in cycle 10 and become polyploid.
FlyBase:FBrf0064779
FlyBase:FBrf0089570
vitellophage
FlyBase:FBrf0089570
FBbt:00000057
fly_anatomy.ontology
FBbt:00000058
This term was obsoleted because it is the same as 'yolk nucleus' (mc141031).
obsolete vitellophage
true
A portion of developing embryonic tissue defined by the simultaneous mitotic division of all of its component cells.
replicative domain
fly_anatomy.ontology
FBbt:00000059
mitotic domain
A portion of developing embryonic tissue defined by the simultaneous mitotic division of all of its component cells.
FlyBase:FBrf0049535
FlyBase:FBrf0089570
replicative domain
FlyBase:FBrf0076117
The first mitotic domain to complete interphase 14 and enter mitosis, doing so approximately 70 minutes after the start of interphase 14. It is located dorsolaterally at the anterior the animal, and is bilaterally symmetric.
mitotic domain delta14-1
fly_anatomy.ontology
FBbt:00000060
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 1
The first mitotic domain to complete interphase 14 and enter mitosis, doing so approximately 70 minutes after the start of interphase 14. It is located dorsolaterally at the anterior the animal, and is bilaterally symmetric.
FlyBase:FBrf0049535
Bilaterally symmetric mitotic domain that includes ventral cells immediately anterior to the cephalic fold and a contiguous stripe of cells that extends dorsally along the anterior face of the cephalic fold.
mitotic domain delta14-2
fly_anatomy.ontology
FBbt:00000061
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 2
Bilaterally symmetric mitotic domain that includes ventral cells immediately anterior to the cephalic fold and a contiguous stripe of cells that extends dorsally along the anterior face of the cephalic fold.
FlyBase:FBrf0049535
mitotic domain delta14-2
FlyBase:FBrf0049535
Unpaired mitotic domain that straddles the dorsal midline near the anterior tip of the embryo.
mitotic domain delta14-3
fly_anatomy.ontology
FBbt:00000062
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 3
Unpaired mitotic domain that straddles the dorsal midline near the anterior tip of the embryo.
FlyBase:FBrf0049535
mitotic domain delta14-3
FlyBase:FBrf0049535
Bilaterally symmetric domain occupying the posterior tip of the germ band. Mitosis begins just when germ band elongation starts.
mitotic domain14-4
fly_anatomy.ontology
FBbt:00000063
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 4
Bilaterally symmetric domain occupying the posterior tip of the germ band. Mitosis begins just when germ band elongation starts.
FlyBase:FBrf0049535
mitotic domain14-4
FlyBase:FBrf0049535
Large, bilaterally paired mitotic domain of the embryo lying on the dorsolateral surface immediately anterior to the cephalic furrow and on the contiguous anterior face of the cephalic furrow.
fly_anatomy.ontology
mitotic domain delta14-5
FBbt:00000064
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 5
Large, bilaterally paired mitotic domain of the embryo lying on the dorsolateral surface immediately anterior to the cephalic furrow and on the contiguous anterior face of the cephalic furrow.
FlyBase:FBrf0049535
mitotic domain delta14-5
FlyBase:FBrf0049535
Bilaterally paired mitotic domain predominantly lying on the dorsolateral surface of the embryo, just posterior to the cephalic fold. The domain's anterior margin lies inside the cephalic fold, on its posterior face.
mitotic domain delta14-6
fly_anatomy.ontology
FBbt:00000065
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 6
Bilaterally paired mitotic domain predominantly lying on the dorsolateral surface of the embryo, just posterior to the cephalic fold. The domain's anterior margin lies inside the cephalic fold, on its posterior face.
FlyBase:FBrf0049535
mitotic domain delta14-6
FlyBase:FBrf0049535
Bilaterally paired mitotic domain of the embryo located wholly within the cephalic fold.
mitotic domain delta14-7
fly_anatomy.ontology
FBbt:00000066
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 7
Bilaterally paired mitotic domain of the embryo located wholly within the cephalic fold.
FlyBase:FBrf0049535
mitotic domain delta14-7
FlyBase:FBrf0049535
Unpaired mitotic domain of the embryo located immediately ahead of the 'T' at the anterior end of the ventral furrow, straddling the ventral midline. Along with mitotic domain 9, this domain is distinguished by most of its cells dividing along axes perpendicular to the embryonic surface.
mitotic domain delta14-8
fly_anatomy.ontology
FBbt:00000067
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 8
Unpaired mitotic domain of the embryo located immediately ahead of the 'T' at the anterior end of the ventral furrow, straddling the ventral midline. Along with mitotic domain 9, this domain is distinguished by most of its cells dividing along axes perpendicular to the embryonic surface.
FlyBase:FBrf0049535
mitotic domain delta14-8
FlyBase:FBrf0049535
Large, bilaterally paired mitotic domain located anterior to the cephalic fold, adjacent and ventral to mitotic domain 5. Along with mitotic domain 8, this domain is distinguished by its cells dividing along axes perpendicular to the embryonic surface.
mitotic domain delta14-9
fly_anatomy.ontology
FBbt:00000068
mitotic domain 9
Large, bilaterally paired mitotic domain located anterior to the cephalic fold, adjacent and ventral to mitotic domain 5. Along with mitotic domain 8, this domain is distinguished by its cells dividing along axes perpendicular to the embryonic surface.
FlyBase:FBrf0049535
mitotic domain delta14-9
FlyBase:FBrf0049535
The largest of the mitotic domains. Between 55 and 65 minutes after mitosis 14 the cells of this domain invaginate to create the ventral furrow.
mitotic domain delta14-10
fly_anatomy.ontology
FBbt:00000069
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 10
The largest of the mitotic domains. Between 55 and 65 minutes after mitosis 14 the cells of this domain invaginate to create the ventral furrow.
FlyBase:FBrf0049535
mitotic domain delta14-10
FlyBase:FBrf0049535
A little after 80mins after mitosis 14, mitosis begins simultaneously in five dorsolateral sites on each side of the embryo.
mitotic domain delta14-11
fly_anatomy.ontology
FBbt:00000070
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 11
A little after 80mins after mitosis 14, mitosis begins simultaneously in five dorsolateral sites on each side of the embryo.
FlyBase:FBrf0049535
mitotic domain delta14-11
FlyBase:FBrf0049535
Small bilaterally paired mitotic domain of the embryo, located immediately anterior to mitotic domain 4.
mitotic domain delta14-12
fly_anatomy.ontology
FBbt:00000071
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 12
Small bilaterally paired mitotic domain of the embryo, located immediately anterior to mitotic domain 4.
FlyBase:FBrf0049535
mitotic domain delta14-12
FlyBase:FBrf0049535
Bilaterally paired mitotic domain that, along with mitotic domain 22, forms a pouch-like invagination beneath the posterior tip of the elongating germ band which holds the pole cells. The cells of mitotic domain 13 form a ring around the opening of the pouch.
mitotic domain delta14-13
fly_anatomy.ontology
FBbt:00000072
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 13
Bilaterally paired mitotic domain that, along with mitotic domain 22, forms a pouch-like invagination beneath the posterior tip of the elongating germ band which holds the pole cells. The cells of mitotic domain 13 form a ring around the opening of the pouch.
FlyBase:FBrf0049535
mitotic domain delta14-13
FlyBase:FBrf0049535
In each half of the embryo, this mitotic domain consists of a row of one or two cells wide immediately lateral to the ventral furrow. The two rows of cells that form this domain lie on opposite sides of mitotic domain 10 in the blastoderm-stage embryo, but are brought together at the ventral midline when domain 10 invaginates.
mitotic domain delta14-14
fly_anatomy.ontology
mesectodermal cells
FBbt:00000073
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 14
In each half of the embryo, this mitotic domain consists of a row of one or two cells wide immediately lateral to the ventral furrow. The two rows of cells that form this domain lie on opposite sides of mitotic domain 10 in the blastoderm-stage embryo, but are brought together at the ventral midline when domain 10 invaginates.
FlyBase:FBrf0049535
mitotic domain delta14-14
FlyBase:FBrf0049535
mesectodermal cells
FlyBase:FBrf0007732
A mitotic domain region that is approximately 1 cell-wide and surrounds mitotic domains 8 and 23.
mitotic domain delta14-15
fly_anatomy.ontology
FBbt:00000074
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 15
A mitotic domain region that is approximately 1 cell-wide and surrounds mitotic domains 8 and 23.
FlyBase:FBrf0049535
mitotic domain delta14-15
FlyBase:FBrf0049535
true
true
Unpaired, chalice-shaped mitotic domain that straddles the dorsal midline, between mitotic domains 1, 3 and 20.
mitotic domain delta14-18
fly_anatomy.ontology
FBbt:00000077
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 18
Unpaired, chalice-shaped mitotic domain that straddles the dorsal midline, between mitotic domains 1, 3 and 20.
FlyBase:FBrf0049535
mitotic domain delta14-18
FlyBase:FBrf0049535
Along the length of the germ band, this long narrow domain, one or two cells wide, separates mitotic domains A and 11.
mitotic domain delta14-19
fly_anatomy.ontology
FBbt:00000078
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 19
Along the length of the germ band, this long narrow domain, one or two cells wide, separates mitotic domains A and 11.
FlyBase:FBrf0049535
mitotic domain delta14-19
FlyBase:FBrf0049535
Unpaired mitotic domain on the dorsal midline lying just posterior to mitotic domain 18, and between the paired members of domain B.
mitotic domain delta14-20
fly_anatomy.ontology
FBbt:00000079
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 20
Unpaired mitotic domain on the dorsal midline lying just posterior to mitotic domain 18, and between the paired members of domain B.
FlyBase:FBrf0049535
mitotic domain delta14-20
FlyBase:FBrf0049535
true
Bilaterally paired mitotic domain that, along with mitotic domain 13, forms a pouch-like invagination beneath the posterior tip of the elongating germ band which holds the pole cells.
mitotic domain delta14-22
fly_anatomy.ontology
FBbt:00000081
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 22
Bilaterally paired mitotic domain that, along with mitotic domain 13, forms a pouch-like invagination beneath the posterior tip of the elongating germ band which holds the pole cells.
FlyBase:FBrf0049535
mitotic domain delta14-22
FlyBase:FBrf0049535
Small, unpaired mitotic domain which, in the just-cellularized blastoderm, occupies the anterior tip of the embryo.
mitotic domain delta14-23
fly_anatomy.ontology
FBbt:00000082
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 23
Small, unpaired mitotic domain which, in the just-cellularized blastoderm, occupies the anterior tip of the embryo.
FlyBase:FBrf0049535
mitotic domain delta14-23
FlyBase:FBrf0049535
Small, late-dividing mitotic domain located in the presumptive head, between mitotic domains 2, 5, and 9. When the first domains are entering mitosis, mitotic domain 24 is located on the lip of the cephalic fold, but by the time the cells of this domain divide, the opening of the cephalic fold has repositioned mitotic domain 24 further forwards.
mitotic domain delta14-24
fly_anatomy.ontology
FBbt:00000083
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 24
Small, late-dividing mitotic domain located in the presumptive head, between mitotic domains 2, 5, and 9. When the first domains are entering mitosis, mitotic domain 24 is located on the lip of the cephalic fold, but by the time the cells of this domain divide, the opening of the cephalic fold has repositioned mitotic domain 24 further forwards.
FlyBase:FBrf0049535
mitotic domain delta14-24
FlyBase:FBrf0049535
At about 115mins after the onset of mitosis stage 14, the first cells in the ventral territory immediately adjacent to mitotic domain 14, divide. These first dividing cells constitute mitotic domain 25, whose metamerically reiterated members are located amongst the cells of domain M that begin division about 25mins later and will divide asynchronously.
mitotic domain delta14-25
fly_anatomy.ontology
FBbt:00000084
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain 25
At about 115mins after the onset of mitosis stage 14, the first cells in the ventral territory immediately adjacent to mitotic domain 14, divide. These first dividing cells constitute mitotic domain 25, whose metamerically reiterated members are located amongst the cells of domain M that begin division about 25mins later and will divide asynchronously.
FlyBase:FBrf0049535
mitotic domain delta14-25
FlyBase:FBrf0049535
fly_anatomy.ontology
FBbt:00000085
mitotic domain 26
At blastoderm, prior to elongation, domain A is a wide band of cells straddling the dorsal midline and spanning the length of the germ band. Germ band elongation buckles and folds this domain. This domain becomes the amnioserosa.
fly_anatomy.ontology
FBbt:00000086
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain A
At blastoderm, prior to elongation, domain A is a wide band of cells straddling the dorsal midline and spanning the length of the germ band. Germ band elongation buckles and folds this domain. This domain becomes the amnioserosa.
FlyBase:FBrf0049535
Mitotic domain B is a paired domain that occupies a wedge-shaped area on the dorsolateral surface of the presumptive head.
fly_anatomy.ontology
FBbt:00000087
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain B
Mitotic domain B is a paired domain that occupies a wedge-shaped area on the dorsolateral surface of the presumptive head.
FlyBase:FBrf0049535
Region surrounding the segmentally reiterated mitotic domain 25 cells. Cells of mitotic domain M do not divide with any obvious bilateral symmetry.
fly_anatomy.ontology
FBbt:00000088
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain M
Region surrounding the segmentally reiterated mitotic domain 25 cells. Cells of mitotic domain M do not divide with any obvious bilateral symmetry.
FlyBase:FBrf0049535
Mitotic domain N is the ventrolateral region surrounding mitotic domains 16, 17 and 21.
fly_anatomy.ontology
FBbt:00000089
See figure 1 of Foe (1989) for an atlas of mitotic domains.
mitotic domain N
Mitotic domain N is the ventrolateral region surrounding mitotic domains 16, 17 and 21.
FlyBase:FBrf0049535
Protuberance of the embryonic head that develops at stage 12. It forms from the dorsal part of the gnathal segments. It gives rise to the frontal sac.
fly_anatomy.ontology
FBbt:00000090
dorsal ridge
Protuberance of the embryonic head that develops at stage 12. It forms from the dorsal part of the gnathal segments. It gives rise to the frontal sac.
FlyBase:FBrf0064803
Cytoplasmic bud that forms at the posterior pole of the embryo during cycle 9. Pole buds give rise to the pole cells.
fly_anatomy.ontology
FBbt:00000091
pole bud
Cytoplasmic bud that forms at the posterior pole of the embryo during cycle 9. Pole buds give rise to the pole cells.
FlyBase:FBrf0064779
Cell that forms at the posterior pole of the early embryo. It is a diploid germ cell that enters into close association with the somatic cells of the gonad and proliferates during larval stages to give rise to male or female germ cells.
CL:0000301
GC
pole cell
fly_anatomy.ontology
FBbt:00000092
Can be identified by expression of vasa (Slaidina et al., 2020).
primordial germ cell
Cell that forms at the posterior pole of the early embryo. It is a diploid germ cell that enters into close association with the somatic cells of the gonad and proliferates during larval stages to give rise to male or female germ cells.
FlyBase:FBrf0045371
GC
FlyBase:FBrf0244767
The middle underside of the embryo, where the midline neurons and midline glia develop (Kearney et al., 2004).
ventral midline
UBERON:0009571
medial cord
fly_anatomy.ontology
FBbt:00000093
ventral midline of embryo
The middle underside of the embryo, where the midline neurons and midline glia develop (Kearney et al., 2004).
FlyBase:FBrf0089570
FlyBase:FBrf0180108
medial cord
FlyBase:FBrf0089570
.
fly_anatomy.ontology
Asn Cly
FBbt:00000094
clypeo-labral anlage in statu nascendi
.
FBC:VH
Asn Cly
FBC:DOS
A squamous epithelial tissue that derives from the dorsal-most region of the cellular blastoderm and that covers the dorsal side of the embryo following germ-band retraction, prior to dorsal closure.
UBERON:0010302
fly_anatomy.ontology
FBbt:00000095
amnioserosa
A squamous epithelial tissue that derives from the dorsal-most region of the cellular blastoderm and that covers the dorsal side of the embryo following germ-band retraction, prior to dorsal closure.
FlyBase:FBrf0041814
Furrow of the embryo that forms at the beginning of stage 6, and extends to cover most of the length of the ventral midline (Campos-Ortega and Hartenstein, 1985). It forms mesoderm and endoderm (Campos-Ortega and Hartenstein, 1985). The lips fuse shortly after invagination, so that it is no longer visible as a furrow after stage 7 (Campos-Ortega and Hartenstein, 1985).
UBERON:6000096
fly_anatomy.ontology
FBbt:00000096
ventral furrow
Furrow of the embryo that forms at the beginning of stage 6, and extends to cover most of the length of the ventral midline (Campos-Ortega and Hartenstein, 1985). It forms mesoderm and endoderm (Campos-Ortega and Hartenstein, 1985). The lips fuse shortly after invagination, so that it is no longer visible as a furrow after stage 7 (Campos-Ortega and Hartenstein, 1985).
FlyBase:FBrf0041814
Furrow of the embryo that roughly separates the procephalon from the gnathal, thoracic and abdominal regions (Campos-Ortega and Hartenstein, 1985). It appears during stage 6, extending from the dorsal midline as an almost vertical slit, then progressively reclines posteriorly (Campos-Ortega and Hartenstein, 1985). It vanishes during stage 11, as its cells contribute to the gnathocephalon (Campos-Ortega and Hartenstein, 1985).
UBERON:6000097
fly_anatomy.ontology
FBbt:00000097
cephalic furrow
Furrow of the embryo that roughly separates the procephalon from the gnathal, thoracic and abdominal regions (Campos-Ortega and Hartenstein, 1985). It appears during stage 6, extending from the dorsal midline as an almost vertical slit, then progressively reclines posteriorly (Campos-Ortega and Hartenstein, 1985). It vanishes during stage 11, as its cells contribute to the gnathocephalon (Campos-Ortega and Hartenstein, 1985).
FlyBase:FBrf0041814
Furrow that extends over the dorsal part of the embryo, anterior to the posterior transverse furrow (Campos-Ortega and Hartenstein, 1985). It appears during stage 6 and deepens during stage 7 (Campos-Ortega and Hartenstein, 1985). It migrates anteriorly by cells moving in and out of the fold (Campos-Ortega and Hartenstein, 1985). It is no longer visible by stage 9 and its cells contribute to the amnioserosa (Campos-Ortega and Hartenstein, 1985).
anterior dorsal fold
anterior transversal furrow
fly_anatomy.ontology
anterior lateral fold
FBbt:00000098
anterior transverse furrow
Furrow that extends over the dorsal part of the embryo, anterior to the posterior transverse furrow (Campos-Ortega and Hartenstein, 1985). It appears during stage 6 and deepens during stage 7 (Campos-Ortega and Hartenstein, 1985). It migrates anteriorly by cells moving in and out of the fold (Campos-Ortega and Hartenstein, 1985). It is no longer visible by stage 9 and its cells contribute to the amnioserosa (Campos-Ortega and Hartenstein, 1985).
FlyBase:FBrf0041814
anterior dorsal fold
FlyBase:FBrf0041814
anterior transversal furrow
FlyBase:FBrf0041814
Furrow that extends over the dorsal part of the embryo, posterior to the anterior transverse furrow (Campos-Ortega and Hartenstein, 1985). It appears during stage 6 and deepens during stage 7 (Campos-Ortega and Hartenstein, 1985). It migrates anteriorly by cells moving in and out of the fold (Campos-Ortega and Hartenstein, 1985). It is no longer visible by stage 9 and its cells contribute to the amnioserosa (Campos-Ortega and Hartenstein, 1985).
posterior dorsal fold
posterior transversal furrow
fly_anatomy.ontology
posterior lateral fold
FBbt:00000099
posterior transverse furrow
Furrow that extends over the dorsal part of the embryo, posterior to the anterior transverse furrow (Campos-Ortega and Hartenstein, 1985). It appears during stage 6 and deepens during stage 7 (Campos-Ortega and Hartenstein, 1985). It migrates anteriorly by cells moving in and out of the fold (Campos-Ortega and Hartenstein, 1985). It is no longer visible by stage 9 and its cells contribute to the amnioserosa (Campos-Ortega and Hartenstein, 1985).
FlyBase:FBrf0041814
posterior dorsal fold
FlyBase:FBrf0041814
posterior transversal furrow
FlyBase:FBrf0041814
Furrow of the embryo that separates each segment into anterior and posterior compartments (Larsen et al., 2008). It forms in the ventrolateral region of its segment in early stage 11 and disappears late in stage 11 (Larsen et al., 2008).
PS groove
parasegment groove
fly_anatomy.ontology
FBbt:00000100
parasegmental furrow
Furrow of the embryo that separates each segment into anterior and posterior compartments (Larsen et al., 2008). It forms in the ventrolateral region of its segment in early stage 11 and disappears late in stage 11 (Larsen et al., 2008).
FlyBase:FBrf0207243
PS groove
FlyBase:FBrf0207243
parasegment groove
FlyBase:FBrf0207243
Furrow that forms between segments during embryonic stage 11 and persists to the larval stage (Campos-Ortega and Hartenstein, 1985).
segmental groove
fly_anatomy.ontology
intersegmental furrow
FBbt:00000101
metameric furrow
Furrow that forms between segments during embryonic stage 11 and persists to the larval stage (Campos-Ortega and Hartenstein, 1985).
FlyBase:FBrf0041814
segmental groove
FlyBase:FBrf0167502
intersegmental furrow
FlyBase:FBrf0041814
Embryonic collection of cells that will give rise to the ventral, metameric regions of the embryo (Campos-Ortega and Hartenstein, 1997). It comprises precursors of the gnathal, thoracic and abdominal segments (Campos-Ortega and Hartenstein, 1997).
fly_anatomy.ontology
FBbt:00000102
germ band
Embryonic collection of cells that will give rise to the ventral, metameric regions of the embryo (Campos-Ortega and Hartenstein, 1997). It comprises precursors of the gnathal, thoracic and abdominal segments (Campos-Ortega and Hartenstein, 1997).
FlyBase:FBrf0089570
fly_anatomy.ontology
FBbt:00000103
obsolete germ layer anlage
true
Contiguous region of early embryonic cells that will invaginate to form the mesoderm during gastrulation (Campos-Ortega and Hartenstein, 1997).
UBERON:6000104
fly_anatomy.ontology
ventral plate
FBbt:00000104
mesoderm anlage
Contiguous region of early embryonic cells that will invaginate to form the mesoderm during gastrulation (Campos-Ortega and Hartenstein, 1997).
FlyBase:FBrf0089570
FlyBase:FBrf0155831
fly_anatomy.ontology
FBbt:00000105
obsolete somatic mesoderm anlage
true
fly_anatomy.ontology
FBbt:00000106
obsolete visceral mesoderm anlage
true
true
true
Contiguous region of early embryonic cells that forms a single-cell border between the anlagen of the mesoderm and ectoderm on either side (Campos-Ortega and Hartenstein, 1997). As the mesoderm invaginates and the ventral furrow closes, the two rows of cells come together to form the mesectoderm at the ventral midline of the embryo (Campos-Ortega and Hartenstein, 1997).
fly_anatomy.ontology
AMesEc
mesectoderm ISN
FBbt:00000109
mesectoderm anlage
Contiguous region of early embryonic cells that forms a single-cell border between the anlagen of the mesoderm and ectoderm on either side (Campos-Ortega and Hartenstein, 1997). As the mesoderm invaginates and the ventral furrow closes, the two rows of cells come together to form the mesectoderm at the ventral midline of the embryo (Campos-Ortega and Hartenstein, 1997).
FlyBase:FBrf0089570
FlyBase:FBrf0155831
mesectoderm ISN
FlyBase:FBrf0180108
Complex primordium that is formed during gastrulation (stage 6-7), when anlagen invaginate from the monolayer of the cellular blastoderm (Campos-Ortega and Hartenstein, 1997; Hartenstein, 2004). The invaginated anlagen become organized into the middle two layers of a three-layered tube structure (Campos-Ortega and Hartenstein, 1997). These three layers correspond to the three germ layers of the endoderm, mesoderm and ectoderm (from inner to outer, respectively), with each layer having distinct cell division patterns and cell fates (Campos-Ortega and Hartenstein, 1997).
UBERON:0000923
fly_anatomy.ontology
FBbt:00000110
germ layer
Complex primordium that is formed during gastrulation (stage 6-7), when anlagen invaginate from the monolayer of the cellular blastoderm (Campos-Ortega and Hartenstein, 1997; Hartenstein, 2004). The invaginated anlagen become organized into the middle two layers of a three-layered tube structure (Campos-Ortega and Hartenstein, 1997). These three layers correspond to the three germ layers of the endoderm, mesoderm and ectoderm (from inner to outer, respectively), with each layer having distinct cell division patterns and cell fates (Campos-Ortega and Hartenstein, 1997).
FlyBase:FBrf0089570
FlyBase:FBrf0155831
FlyBase:FBrf0178740
Outermost germ layer of the embryo (Campos-Ortega and Hartenstein, 1997). It is formed from the ectoderm anlage, which comprises the cells of the cellular blastoderm monolayer that do not invaginate during gastrulation (Campos-Ortega and Hartenstein, 1997).
UBERON:0000924
fly_anatomy.ontology
FBbt:00000111
ectoderm
Outermost germ layer of the embryo (Campos-Ortega and Hartenstein, 1997). It is formed from the ectoderm anlage, which comprises the cells of the cellular blastoderm monolayer that do not invaginate during gastrulation (Campos-Ortega and Hartenstein, 1997).
FlyBase:FBrf0089570
FlyBase:FBrf0155831
UBERON:6000112
fly_anatomy.ontology
AdorEc
dorEc
FBbt:00000112
dorsal ectoderm
true
fly_anatomy.ontology
procephalic neuroectoderm
FBbt:00000114
obsolete procephalic neurectoderm
true
true
.
fly_anatomy.ontology
lateral ventral neuroectoderm
FBbt:00000116
lateral ventral neurectoderm
.
FlyBase:FBrf0076117
.
fly_anatomy.ontology
medial ventral neuroectoderm
FBbt:00000117
medial ventral neurectoderm
.
FlyBase:FBrf0076117
.
fly_anatomy.ontology
intermediate ventral neuroectoderm
FBbt:00000118
intermediate ventral neurectoderm
.
FlyBase:FBrf0076117
The region of the ectoderm anterior to the cephalic furrow.
UBERON:6000119
fly_anatomy.ontology
FBbt:00000119
anterior ectoderm
The region of the ectoderm anterior to the cephalic furrow.
FBC:DOS
stomodeal invagination early
fly_anatomy.ontology
anterior midgut invagination
FBbt:00000120
early stomodeal invagination
fly_anatomy.ontology
FBbt:00000121
lateral ectoderm
fly_anatomy.ontology
FBbt:00000122
posterior ectoderm
The posterior invagination of ectoderm that gives rise to part of the digestive system.
UBERON:0000931
fly_anatomy.ontology
posterior midgut invagination
FBbt:00000123
amnioproctodeal invagination
The posterior invagination of ectoderm that gives rise to part of the digestive system.
FBC:GG
Cell that has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity.
CARO:0000077
CL:0000066
fly_anatomy.ontology
FBbt:00000124
epithelial cell
Cell that has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity.
CARO:MAH
Innermost germ layer of the embryo (Campos-Ortega and Hartenstein, 1997). It is formed by the invagination of two anlagen, those of the anterior and posterior midgut (Campos-Ortega and Hartenstein, 1997).
UBERON:0000925
fly_anatomy.ontology
FBbt:00000125
endoderm
Innermost germ layer of the embryo (Campos-Ortega and Hartenstein, 1997). It is formed by the invagination of two anlagen, those of the anterior and posterior midgut (Campos-Ortega and Hartenstein, 1997).
FlyBase:FBrf0089570
FlyBase:FBrf0155831
Middle germ layer of the embryo (between ectoderm and endoderm) following gastrulation (Campos-Ortega and Hartenstein, 1997). Shortly after its formation, its cells undergo mitosis and it loses its regular epithelial architecture (Campos-Ortega and Hartenstein, 1997). In stage 9 it reorganizes into a regular monolayer of cuboidal cells that lines the ectoderm (Campos-Ortega and Hartenstein, 1997). At the end of stage 10 further cell divisions disrupt this structure and its cells reform into two layers in stage 11 (Campos-Ortega and Hartenstein, 1997). It finally splits up into separate cell masses in late stage 11 (Campos-Ortega and Hartenstein, 1997). Its derivatives include the muscles, heart and fat body (Campos-Ortega and Hartenstein, 1997).
UBERON:0000926
fly_anatomy.ontology
FBbt:00000126
mesoderm
Middle germ layer of the embryo (between ectoderm and endoderm) following gastrulation (Campos-Ortega and Hartenstein, 1997). Shortly after its formation, its cells undergo mitosis and it loses its regular epithelial architecture (Campos-Ortega and Hartenstein, 1997). In stage 9 it reorganizes into a regular monolayer of cuboidal cells that lines the ectoderm (Campos-Ortega and Hartenstein, 1997). At the end of stage 10 further cell divisions disrupt this structure and its cells reform into two layers in stage 11 (Campos-Ortega and Hartenstein, 1997). It finally splits up into separate cell masses in late stage 11 (Campos-Ortega and Hartenstein, 1997). Its derivatives include the muscles, heart and fat body (Campos-Ortega and Hartenstein, 1997).
FlyBase:FBrf0089570
FlyBase:FBrf0155831
Mesoderm that originates anterior to the cephalic furrow. It forms two vertical plates that flank the anterior midgut rudiment, and from stage 10 onwards, the stomodeum.
hms
procephalic mesoderm
fly_anatomy.ontology
HeadMes
HeadMesP3
P4 HeadMes
head mesoderm P3 primordium
head mesoderm primordium P4
FBbt:00000127
head mesoderm
Mesoderm that originates anterior to the cephalic furrow. It forms two vertical plates that flank the anterior midgut rudiment, and from stage 10 onwards, the stomodeum.
FlyBase:FBrf0064803
FlyBase:FBrf0089570
FlyBase:FBrf0190261
hms
FlyBase:FBrf0064803
procephalic mesoderm
FlyBase:FBrf0089570
P4 HeadMes
FBC:DOS
The mesoderm of segments T1-A9. It first becomes morphologically distinct during ventral furrow formation. Following invagination during stages 6 and 7, it remains a coherent structure with no morphologically apparent subdivisions, apart from transient metamery during stage 9, until stage 11. It undergoes a number of morphological changes during this period: as its cells divide following invagination, it loses its epithelial integrity and by stage 9 has rearranged into a monolayer of cuboidal cells. A further division happens during stage 10 leading to two distinct layers by stage 11.
UBERON:6000128
fly_anatomy.ontology
AtrunkMes
P2 TrMes
TrMes
FBbt:00000128
trunk mesoderm
The mesoderm of segments T1-A9. It first becomes morphologically distinct during ventral furrow formation. Following invagination during stages 6 and 7, it remains a coherent structure with no morphologically apparent subdivisions, apart from transient metamery during stage 9, until stage 11. It undergoes a number of morphological changes during this period: as its cells divide following invagination, it loses its epithelial integrity and by stage 9 has rearranged into a monolayer of cuboidal cells. A further division happens during stage 10 leading to two distinct layers by stage 11.
FlyBase:FBrf0089570
P2 TrMes
FBC:DOS
fly_anatomy.ontology
FBbt:00000129
somatic mesoderm
UBERON:6000130
fly_anatomy.ontology
FBbt:00000130
visceral mesoderm
FBbt:00005541
fly_anatomy.ontology
FBbt:00000131
Obsoleted as this the same structure as what is now called the 'cardiogenic mesoderm'.
obsolete mesodermal crest
true
fly_anatomy.ontology
FBbt:00000132
Obsoleted along with the more general 'mesodermal crest' (merged with 'cardiogenic mesoderm'). The term has not been in curation at all, so it's unclear that there is a need for it.
obsolete mesodermal crest of segment T3
true
fly_anatomy.ontology
FBbt:00000133
obsolete circular visceral mesoderm
true
fly_anatomy.ontology
FBbt:00000134
obsolete longitudinal visceral mesoderm
true
FBbt:00005473
FBbt:00005520
fly_anatomy.ontology
FBbt:00000135
obsolete gonadal mesoderm
true
A double row of cells located at the midline from the end of gastrulation when the mesectoderm anlage of either side meet at the midline (Campos-Ortega and Hartenstein, 1997). Initially there are approximately eight cells per segment, which soon divide to become approximately 16 cells, but these do not have a clear metameric organization at this stage (Campos-Ortega and Hartenstein, 1997; Kearney et al., 2004). These cells become elongated during stage 8, so that one end remains exposed to the outside of the embryo at the midline, in line with the ectoderm, while the other end maintains contact with the mesoderm (Campos-Ortega and Hartenstein, 1997).
mesectoderm anlage
UBERON:0000927
fly_anatomy.ontology
MesEc
FBbt:00000136
mesectoderm
A double row of cells located at the midline from the end of gastrulation when the mesectoderm anlage of either side meet at the midline (Campos-Ortega and Hartenstein, 1997). Initially there are approximately eight cells per segment, which soon divide to become approximately 16 cells, but these do not have a clear metameric organization at this stage (Campos-Ortega and Hartenstein, 1997; Kearney et al., 2004). These cells become elongated during stage 8, so that one end remains exposed to the outside of the embryo at the midline, in line with the ectoderm, while the other end maintains contact with the mesoderm (Campos-Ortega and Hartenstein, 1997).
FlyBase:FBrf0089570
FlyBase:FBrf0180108
FlyBase:FBrf0195284
mesectoderm anlage
FlyBase:FBrf0180108
Any tagma (FBbt:00000002) that is part of some embryo (FBbt:00000052).
UBERON:6000137
fly_anatomy.ontology
FBbt:00000137
embryonic tagma
Any tagma (FBbt:00000002) that is part of some embryo (FBbt:00000052).
FBC:Autogenerated
Metameric unit of a Drosophila embryo whose boundaries are the compartment boundaries that run through the middle of adjacent segments, parallel to the segment boundaries.
fly_anatomy.ontology
FBbt:00000138
parasegment
Metameric unit of a Drosophila embryo whose boundaries are the compartment boundaries that run through the middle of adjacent segments, parallel to the segment boundaries.
FBC:DOS
Embryonic metameric unit comprising the posterior compartment of the mandibular segment and the anterior compartment of the maxillary segment.
fly_anatomy.ontology
FBbt:00000139
parasegment 1
Embryonic metameric unit comprising the posterior compartment of the mandibular segment and the anterior compartment of the maxillary segment.
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of the maxillary segment and the anterior compartment of the labial segment.
fly_anatomy.ontology
FBbt:00000140
parasegment 2
Embryonic metameric unit comprising the posterior compartment of the maxillary segment and the anterior compartment of the labial segment.
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of the labial segment and the anterior compartment of thoracic segment 1 .
fly_anatomy.ontology
FBbt:00000141
parasegment 3
Embryonic metameric unit comprising the posterior compartment of the labial segment and the anterior compartment of thoracic segment 1 .
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of thoracic segment 1 and the anterior compartment of thoracic segment 2 .
fly_anatomy.ontology
FBbt:00000142
parasegment 4
Embryonic metameric unit comprising the posterior compartment of thoracic segment 1 and the anterior compartment of thoracic segment 2 .
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of thoracic segment 2 and the anterior compartment of thoracic segment 3 .
fly_anatomy.ontology
FBbt:00000143
parasegment 5
Embryonic metameric unit comprising the posterior compartment of thoracic segment 2 and the anterior compartment of thoracic segment 3 .
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of thoracic segment 3 and the anterior compartment of abdominal segment 1.
fly_anatomy.ontology
FBbt:00000144
parasegment 6
Embryonic metameric unit comprising the posterior compartment of thoracic segment 3 and the anterior compartment of abdominal segment 1.
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of abdominal segment 1 and the anterior compartment of abdominal segment 2.
fly_anatomy.ontology
FBbt:00000145
parasegment 7
Embryonic metameric unit comprising the posterior compartment of abdominal segment 1 and the anterior compartment of abdominal segment 2.
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of abdominal segment 2 and the anterior compartment of abdominal segment 3.
fly_anatomy.ontology
FBbt:00000146
parasegment 8
Embryonic metameric unit comprising the posterior compartment of abdominal segment 2 and the anterior compartment of abdominal segment 3.
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of abdominal segment 3 and the anterior compartment of abdominal segment 4.
fly_anatomy.ontology
FBbt:00000147
parasegment 9
Embryonic metameric unit comprising the posterior compartment of abdominal segment 3 and the anterior compartment of abdominal segment 4.
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of abdominal segment 4 and the anterior compartment of abdominal segment 5.
fly_anatomy.ontology
FBbt:00000148
parasegment 10
Embryonic metameric unit comprising the posterior compartment of abdominal segment 4 and the anterior compartment of abdominal segment 5.
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of abdominal segment 5 and the anterior compartment of abdominal segment 6.
fly_anatomy.ontology
FBbt:00000149
parasegment 11
Embryonic metameric unit comprising the posterior compartment of abdominal segment 5 and the anterior compartment of abdominal segment 6.
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of abdominal segment 6 and the anterior compartment of abdominal segment 7.
fly_anatomy.ontology
FBbt:00000150
parasegment 12
Embryonic metameric unit comprising the posterior compartment of abdominal segment 6 and the anterior compartment of abdominal segment 7.
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of abdominal segment 7 and the anterior compartment of abdominal segment 8.
fly_anatomy.ontology
FBbt:00000151
parasegment 13
Embryonic metameric unit comprising the posterior compartment of abdominal segment 7 and the anterior compartment of abdominal segment 8.
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of abdominal segment 8 and the anterior compartment of abdominal segment 9.
fly_anatomy.ontology
FBbt:00000152
parasegment 14
Embryonic metameric unit comprising the posterior compartment of abdominal segment 8 and the anterior compartment of abdominal segment 9.
FlyBase:FBrf0043344
Embryonic metameric unit comprising the posterior compartment of abdominal segment 9 and the anterior compartment of abdominal segment 10.
fly_anatomy.ontology
FBbt:00000153
Definition added based on definitions for other parasegment definitions. Parasegment 14 is the most posterior parasegment mentioned in the original parasegment paper (Martinez-Arias and Lawrence, 1985), but subsequent papers (e.g.- Celniker et al., 1989, Mlodzik et al., 1990) refer to parasegment 15, and Campos-Ortega and Hartenstein (1997), refer to two parasegments posterior to parasegment 14 defined by homeotic gene expression.
parasegment 15
Embryonic metameric unit comprising the posterior compartment of abdominal segment 9 and the anterior compartment of abdominal segment 10.
FlyBase:FBrf0049804
FlyBase:FBrf0051565
FlyBase:FBrf0089570
Any segment (FBbt:00000003) that is part of some embryo (FBbt:00000052).
UBERON:6000154
fly_anatomy.ontology
FBbt:00000154
embryonic segment
Any segment (FBbt:00000003) that is part of some embryo (FBbt:00000052).
FBC:Autogenerated
Any head (FBbt:00000004) that is part of some embryo (FBbt:00000052).
UBERON:0008816
fly_anatomy.ontology
FBbt:00000155
embryonic head
Any head (FBbt:00000004) that is part of some embryo (FBbt:00000052).
FBC:Autogenerated
Any ocular segment (FBbt:00000005) that is part of some embryonic head (FBbt:00000155).
fly_anatomy.ontology
embryonic acron
FBbt:00000156
embryonic ocular segment
Any ocular segment (FBbt:00000005) that is part of some embryonic head (FBbt:00000155).
FBC:Autogenerated
Any segment (FBbt:00000003) that is part of some embryonic head (FBbt:00000155).
UBERON:6000157
fly_anatomy.ontology
FBbt:00000157
embryonic head segment
Any segment (FBbt:00000003) that is part of some embryonic head (FBbt:00000155).
FlyBase:FBrf0075072
Any procephalic segment (FBbt:00000007) that is part of some embryonic head (FBbt:00000155).
UBERON:6000158
fly_anatomy.ontology
FBbt:00000158
embryonic procephalic segment
Any procephalic segment (FBbt:00000007) that is part of some embryonic head (FBbt:00000155).
FBC:Autogenerated
Any labral segment (FBbt:00000008) that is part of some embryonic head (FBbt:00000155).
fly_anatomy.ontology
FBbt:00000159
embryonic labral segment