METADATA last updated: 2026-02-26 RT file_name: _citations_papers.md category: various subcategory: papers words: 577 tokens: 1741 CONTENT ## 2021-03-24_Cochrane Antigen Tests Review Link and Guardian Article.pdf [Dinnes J, Deeks JJ, Berhane S, et al.; Cochrane COVID-19 Diagnostic Test Accuracy Group. Rapid, point-of-care antigen tests for diagnosis of SARS-CoV-2 infection. *Cochrane Database Syst Rev*. 2021;2021(3):CD013705.](https://pubmed.ncbi.nlm.nih.gov/33760236/) Publisher: [Cochrane Library](https://doi.org/10.1002/14651858.CD013705.pub2) ## CLIA HUB - How-To Guide.pdf [Lyden A, Crawford E, Ahyong V, et al. CLIAHUB Automated RNA Extraction & RT-PCR Protocol V2 (Companion How-To Document). *protocols.io*. 2020.](https://doi.org/10.17504/protocols.io.bfi2jkge) ## CLIA Hub Paper - Rapid deployment of SARS-CoV-2 testing_ The CLIAHUB (10-28-2020).pdf [Crawford ED, Acosta I, Ahyong V, et al. Rapid deployment of SARS-CoV-2 testing: The CLIAHUB. *PLoS Pathog*. 2020;16(10):e1008966.](https://pubmed.ncbi.nlm.nih.gov/33112933/) Publisher: [PLoS Pathogens](https://doi.org/10.1371/journal.ppat.1008966) ## Curative - Preprint - Post-Disease Divergence in Detection between swabs and saliva (1-26-2021).pdf [Turner F, Vandenberg A, Slepnev VI, et al. Post-disease divergence in SARS-CoV-2 RNA detection between nasopharyngeal, anterior nares and saliva/oral fluid specimens - Significant implications for policy & public health. *medRxiv*. 2021.](https://doi.org/10.1101/2021.01.26.21250523) ## Doudna Lab - Blueprint for Pop-Up SARS-CoV-2 Testing Lab (July 2020 Nature).pdf [IGI Testing Consortium. Blueprint for a pop-up SARS-CoV-2 testing lab. *Nat Biotechnol*. 2020;38(7):791-797.](https://pubmed.ncbi.nlm.nih.gov/32555529/) Publisher: [Nature Biotechnology](https://doi.org/10.1038/s41587-020-0583-3) ## Doudna Lab - Blueprint for Pop-Up SARS-CoV-2 Testing Lab (March 2020 Preprint).pdf [IGI SARS-CoV-2 Testing Consortium. Blueprint for a pop-up SARS-CoV-2 testing lab. *medRxiv*. 2020.](https://doi.org/10.1101/2020.04.11.20061424) Published version: [Nature Biotechnology](https://pubmed.ncbi.nlm.nih.gov/32555529/) ## MADPH - Preprint - Performance and Implementation Evaluation of the Abbott BinaxNOW Rapid Antigen Test (1-9-2021).pdf [Pollock NR, Jacobs JR, Tran K, et al. Performance and implementation evaluation of the Abbott BinaxNOW Rapid Antigen Test in a high-throughput drive-through community testing site in Massachusetts. *J Clin Microbiol*. 2021;59(5):e00083-21.](https://pubmed.ncbi.nlm.nih.gov/33622768/) Preprint: [medRxiv (2021.01.09.21249499)](https://doi.org/10.1101/2021.01.09.21249499) ## Mayer (Fred Hutch) - Preprint - Viral Shedding (8-7-2020).pdf [Goyal A, Reeves DB, Cardozo-Ojeda EF, Schiffer JT, Mayer BT. Viral load and contact heterogeneity predict SARS-CoV-2 transmission and super-spreading events. *eLife*. 2021;10:e63537.](https://pubmed.ncbi.nlm.nih.gov/33620317/) Preprint: [medRxiv (2020.08.07.20169920)](https://doi.org/10.1101/2020.08.07.20169920) ## Nagura-Ikeda - Paper - Clinical evaluation of self-collected saliva by RT-qPCR direct RT-qPCR RT-LAMP and a rapid antigen test (7-7-2020).pdf [Nagura-Ikeda M, Imai K, Tabata S, et al. Clinical evaluation of self-collected saliva by quantitative reverse transcription-PCR (RT-qPCR), direct RT-qPCR, reverse transcription-loop-mediated isothermal amplification, and a rapid antigen test to diagnose COVID-19. *J Clin Microbiol*. 2020;58(9):e01438-20.](https://pubmed.ncbi.nlm.nih.gov/32636214/) Publisher: [ASM / Journal of Clinical Microbiology](https://doi.org/10.1128/JCM.01438-20) ## Nolan - Paper - RT qPCR Testing of SARS CoV 2 a Primer (4-13-2020).pdf [Bustin SA, Nolan T. RT-qPCR testing of SARS-CoV-2: A primer. *Int J Mol Sci*. 2020;21(8):3004.](https://pubmed.ncbi.nlm.nih.gov/32344568/) Publisher: [MDPI (Open Access)](https://doi.org/10.3390/ijms21083004) ## Romer - Preprint - Population-scale testing can suppress the spread of COVID-19 (4-27-2020).pdf [Taipale J, Romer P, Linnarsson S. Population-scale testing can suppress the spread of COVID-19. *medRxiv*. 2020.](https://doi.org/10.1101/2020.04.27.20078329) ## SHIELD UIUC - Preprint - Saliva-Based Molecular Testing for SARS-CoV-2 that Bypasses RNA Extraction (6-18-2020).pdf [Ranoa DRE, Holland RL, Alnaji FG, et al. Saliva-based molecular testing for SARS-CoV-2 that bypasses RNA extraction. *bioRxiv*. 2020.](https://doi.org/10.1101/2020.06.18.159434) ## Technion - Preprint - Evaluation of COVID-19 RT-qPCR test in multi-sample pools (3-6-2020).pdf [Yelin I, Aharony N, Shaer Tamar E, et al. Evaluation of COVID-19 RT-qPCR test in multi-sample pools. *Clin Infect Dis*. 2020;71(16):2073-2078.](https://pubmed.ncbi.nlm.nih.gov/32358960/) Publisher: [Oxford Academic / Clinical Infectious Diseases](https://doi.org/10.1093/cid/ciaa531) ## Tjian - Paper - COVI9-Testing Review (6-16-2020).pdf [Esbin MN, Whitney ON, Chong S, Maurer A, Darzacq X, Tjian R. Overcoming the bottleneck to widespread testing: A rapid review of nucleic acid testing approaches for COVID-19 detection. *RNA*. 2020;26(7):771-783.](https://pubmed.ncbi.nlm.nih.gov/32358057/) Publisher: [RNA / Cold Spring Harbor Laboratory Press](https://doi.org/10.1261/rna.076232.120) ## UIUC SHIELD Preprint - Frequency of surveillance testing necessary to reduce transmission of SARS-CoV-2.pdf [Elbanna A, Goldenfeld N. Frequency of surveillance testing necessary to reduce transmission of SARS-CoV-2. *medRxiv*. 2021.](https://doi.org/10.1101/2021.10.01.21262806)