FROM ubuntu:22.04 # DEBIAN_FRONTEND=noninteractive is used to prevent installation of # package tzdata to ask for timezone ENV DEBIAN_FRONTEND=noninteractive # Required for Gudhi compilation RUN apt update && apt install -y make \ g++ \ cmake \ graphviz \ perl \ texlive-bibtex-extra \ biber \ libboost-all-dev \ libeigen3-dev \ libgmp3-dev \ libmpfr-dev \ libtbb-dev \ libcgal-dev \ locales \ python3 \ python3-pip \ python3-pytest \ python3-tk \ python3-pybind11 \ libfreetype6-dev \ pkg-config \ curl ADD install_cgal.sh / RUN sh install_cgal.sh RUN pip3 install \ numpy \ matplotlib \ scipy \ Cython \ POT \ scikit-learn # apt clean up RUN apt-get autoremove && rm -rf /var/lib/apt/lists/* ARG GUDHI_VERSION="3.10.1" RUN curl -LO "https://github.com/GUDHI/gudhi-devel/releases/download/tags%2Fgudhi-release-${GUDHI_VERSION}/gudhi.${GUDHI_VERSION}.tar.gz" \ && tar xf gudhi.${GUDHI_VERSION}.tar.gz \ && cd gudhi.${GUDHI_VERSION} \ && mkdir build && cd build && cmake -DCMAKE_BUILD_TYPE=Release -DWITH_GUDHI_PYTHON=OFF -DPython_ADDITIONAL_VERSIONS=3 .. \ && make all test install \ && cmake -DWITH_GUDHI_PYTHON=ON . \ && cd python \ && python3 setup.py install